Pregenerated sensors for MANEAL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042763Ensembl transcript IDs: ENSMUST00000064444.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTAAGCCATTGCAGCCACTTGCCCCCTCCTGCTTCATCATGTCTTaGTTCCCAGCACCGCCAGTCCAGGTGCCAGGCTCTGTTCTGCAT | + |
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Preference number: 1 (lower is better) Translates to: LKPLQPLAPSCFIMS*FPAPPVQVPGSVLH Trigger: ATGCAGAACAGAGCCTGGCACCTGGACTGGCGGTGCTGGGAAGCAAGACATGATGAAGCAGGAGGGGGCAAGTGGCTGCAATGGCTTAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR CCA 90 bp | CTTGCTCAAATTCCCCAGCACCTGACAGGCAATAGGTGCTTAGTATaGGTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGA | + |
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Preference number: 1 (lower is better) Translates to: LAQIPQHLTGNRCLV*VLSVPDNGAQESTG Trigger: TCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCACCCATACTAAGCACCTATTGCCTGTCAGGTGCTGGGGAATTTGAGCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGGGCTGGTTGTCCTTGCAGTGACCAGTATTTCACCTCCTCCATCTGCAGCCTGCCAGGCTCTGTTCTaGATGAGCCAGCTGGTCCAC | + |
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Preference number: 2 (lower is better) Translates to: TGLVVLAVTSISPPPSAACQALF*MSQLVH Trigger: GTGGACCAGCTGGCTCATGCAGAACAGAGCCTGGCA...GGCTGCAGATGGAGGAGGTGAAATACTGGTCACTGCAAGGACAACCAGCCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR TCA 90 bp | TACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTTCCTTAAGCCATTGCAGCGCCTATATCCCCAACTaGACCAGTTTGGTGATCTGT | + |
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Preference number: 2 (lower is better) Translates to: YLPQLKAEGPGGSLSHCSAYIPN*TSLVIC Trigger: ACAGATCACCAAACTGGTTCAGTTGGGGATATAGGC...GCTGCAATGGCTTAAGGAACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR TCA 90 bp | TATAAGCAGATCCATCTCCACTGTGCTAAAGCTAGCCAGCCTAGCCATACACTGGCCTCAGCTGAAAGCTaGGGGACCTGGAGGTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: YKQIHLHCAKASQPSHTLASAES*GTWRFL Trigger: AAGGAACCTCCAGGTCCCTCAGCTTTCAGCTGAGGC...CAGTGTATGGCTAGGCTGGCTAGCTTTAGCACAGTGGAGATGGATCTGCTTATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR TCA 90 bp | TATAAGCAGATCCATCTCCACTGTGCTAAAGCTAGCCAGCCTAGCCATACACTGGCTAGCTTAGAACCCTaGGACCCTCCTAAGCATGGC | + |
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Preference number: 2 (lower is better) Translates to: YKQIHLHCAKASQPSHTLASLEP*DPPKHG Trigger: GCCATGCTTAGGAGGGTCTCAGGGTTCTAAGCTAGC...CAGTGTATGGCTAGGCTGGCTAGCTTTAGCACAGTGGAGATGGATCTGCTTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGGGCTGGTTGTCCTTGCAGTGACCAGTATTTCACCTCCTCCATCTGCAGCCGGATCCTGTAAGCTTTaGGAAGGAAACCTTGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: TGLVVLAVTSISPPPSAAGSCKL*EGNLAQ Trigger: TTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCC...GGCTGCAGATGGAGGAGGTGAAATACTGGTCACTGCAAGGACAACCAGCCCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR GCA 90 bp | ATACCAAAAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCAAATTCCCTGCTTCATCATGTCTTaGTTCCCAGCACCGCCAGTC | + |
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Preference number: 2 (lower is better) Translates to: IPKAGSCKLWEGNLAQIPCFIMS*FPAPPV Trigger: GACTGGCGGTGCTGGGAAGCAAGACATGATGAAGCA...GGGAATTTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTTTTGGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR GCA 90 bp | TATAAGCAGATCCATCTCCACTGTGCTAAAGCTAGCCAGCCTAGCCATACACTGTTGGGAAGGAAACCTTaGTCAAATTCCCCAGCACCT | + |
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Preference number: 2 (lower is better) Translates to: YKQIHLHCAKASQPSHTLLGRKP*SNSPAP Trigger: AGGTGCTGGGGAATTTGAGCAAGGTTTCCTTCCCAA...CAGTGTATGGCTAGGCTGGCTAGCTTTAGCACAGTGGAGATGGATCTGCTTATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGAAGGACCTTAAAGACTGAACCAGTTTGGTaGTCTGTTAAGGTTTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: VLSVPDNGAQESTGRTLKTEPVW*SVKVCL Trigger: CAAACAAACCTTAACAGATCACCAAACTGGTTCAGT...CTTTAAGGTCCTTCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR CCA 90 bp | TCCTTCCTGCTGCCTTGCTGTATCCACAATATATATGCAGGGTTAAATCCAGCCAATAGGTGCTTAGTATaGGTGCTCAGTGTTCCTGAT | + |
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Preference number: 2 (lower is better) Translates to: SFLLPCCIHNIYAGLNPANRCLV*VLSVPD Trigger: ATCAGGAACACTGAGCACCCATACTAAGCACCTATT...GGCTGGATTTAACCCTGCATATATATTGTGGATACAGCAAGGCAGCAGGAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | TCCCAGCACCGCCAGTCCAGGTGCCAGGCTCTGTTCTaGATGAGCCAGCTGGTCCACCCACGAGCTCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: SQHRQSRCQALF*MSQLVHPRAPS Trigger: ACTGGGAGCTCGTGGGTGGACCAGCTGGCTCATGCAGAACAGAGCCTGGCACCTGGACTGGCGGTGCTGGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR TCA 72 bp | AGCACCGCCAGTCCAGGTGCCAGGCTCTGTTCTGCATaGGCCAGCTGGTCCACCCACGAGCTCCCAGTTGCT | + |
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Preference number: 3 (lower is better) Translates to: STASPGARLCSA*ASWSTHELPVA Trigger: AGCAACTGGGAGCTCGTGGGTGGACCAGCTGGCTCATGCAGAACAGAGCCTGGCACCTGGACTGGCGGTGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | TTGCAGCCACTTGCCCCCTCCTGCTTCATCATGTCTTaGTTCCCAGCACCGCCAGTCCAGGTGCCAGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LQPLAPSCFIMS*FPAPPVQVPGS Trigger: AGAGCCTGGCACCTGGACTGGCGGTGCTGGGAAGCAAGACATGATGAAGCAGGAGGGGGCAAGTGGCTGCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | TCATCATGTCTTGCTTCCCAGCACCGCCAGTCCAGGTaGCAGGCTCTGTTCTGCATGAGCCAGCTGGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: SSCLASQHRQSR*QALFCMSQLVH Trigger: GTGGACCAGCTGGCTCATGCAGAACAGAGCCTGGCACCTGGACTGGCGGTGCTGGGAAGCAAGACATGATGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | TGCATGAGCCAGCTGGTCCACCCACGAGCTCCCAGTTaGTACTTGGGACTAGCGAGTGCCTATATCCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: CMSQLVHPRAPS*YLGLASAYIPN Trigger: GTTGGGGATATAGGCACTCGCTAGTCCCAAGTAGCAACTGGGAGCTCGTGGGTGGACCAGCTGGCTCATGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | CGGGGGTTAAGTGTCGGTGACTGGGCTGGTTGTCCTTaGAGTGACCAGTATTTCACCTCCTCCATCTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: RGLSVGDWAGCP*SDQYFTSSICS Trigger: GCTGCAGATGGAGGAGGTGAAATACTGGTCACTGCAAGGACAACCAGCCCAGTCACCGACACTTAACCCCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR TCA 72 bp | TCCAAGGGAAGTAAGGTGCATGCTAGCTTAGAACCCTaGGACCCTCCTAAGCATGGCGGCTTGCGCAACTCC | + |
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Preference number: 3 (lower is better) Translates to: SKGSKVHASLEP*DPPKHGGLRNS Trigger: GGAGTTGCGCAAGCCGCCATGCTTAGGAGGGTCTCAGGGTTCTAAGCTAGCATGCACCTTACTTCCCTTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | CTGAAAGCTGAGGGACCTGGAGGTTCCTTAAGCCATTaGAGCCACTTGCCCCCTCCTGCTTCATCATGTCTT | + |
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Preference number: 3 (lower is better) Translates to: LKAEGPGGSLSH*SHLPPPASSCL Trigger: AAGACATGATGAAGCAGGAGGGGGCAAGTGGCTGCAATGGCTTAAGGAACCTCCAGGTCCCTCAGCTTTCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR-3UTR CAA 90 bp | TATAAGCAGATCCATCTCCACTGTGCTAAAGCTAGCCAGCCTAGCCATACACTGAGCCATTGCAGCCACTaGCCCCCTCCTGCTTCATCA | + |
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Preference number: 3 (lower is better) Translates to: YKQIHLHCAKASQPSHTLSHCSH*PPPASS Trigger: TGATGAAGCAGGAGGGGGCAAGTGGCTGCAATGGCT...CAGTGTATGGCTAGGCTGGCTAGCTTTAGCACAGTGGAGATGGATCTGCTTATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR CCA 72 bp | AAGTGTCAGATGTGGTTCCCTGTGTTCAGCAAGATGTaGGAAGGTGGCTGTCCAAGGGAAGTAAGGTGCATG | + |
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Preference number: 3 (lower is better) Translates to: KCQMWFPVFSKM*EGGCPREVRCM Trigger: CATGCACCTTACTTCCCTTGGACAGCCACCTTCCCACATCTTGCTGAACACAGGGAACCACATCTGACACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR GCA 72 bp | AGAAAATCTGAGGGTGCTTGCTCCTTCCTGCTGCCTTaGTGTATCCACAATATATATGCAGGGTTAAATCCA | + |
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Preference number: 3 (lower is better) Translates to: RKSEGACSFLLP*CIHNIYAGLNP Trigger: TGGATTTAACCCTGCATATATATTGTGGATACAGCAAGGCAGCAGGAAGGAGCAAGCACCCTCAGATTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| 3UTR CAA 72 bp | ATTGCAGCCACTTGCCCCCTCCTGCTTCATCATGTCTaGCTTCCCAGCACCGCCAGTCCAGGTGCCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: IAATCPLLLHHV*LPSTASPGARL Trigger: GAGCCTGGCACCTGGACTGGCGGTGCTGGGAAGCAAGACATGATGAAGCAGGAGGGGGCAAGTGGCTGCAAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTGCCGCGAGGATGTCGTaGGTGTGGCTCTCCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: CATPYNYLPQLKAEGPGGAARMS*VWLSST Trigger: CGTGGAGGAGAGCCACACCCACGACATCCTCGCGGC...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | AGTGACCAGTATTTCACCTCCTCCATCTGCAGCCATTTCCCAGAGTTAAAGGCTCGCGCAGGCTCTGCCTaGGCGCAGGATCGGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SDQYFTSSICSHFPELKARAGSA*AQDRPR Trigger: CCGAGGCCGATCCTGCGCCCAGGCAGAGCCTGCGCG...AGCCTTTAACTCTGGGAAATGGCTGCAGATGGAGGAGGTGAAATACTGGTCACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTAACTGGCCGAGATCTTaGGGTCCCAGTGCGGCACCA | + |
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Preference number: 4 (lower is better) Translates to: CATPYNYLPQLKAEGPGGNWPRS*GPSAAP Trigger: TGGTGCCGCACTGGGACCCCAAGATCTCGGCCAGTT...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | TATAAGCAGATCCATCTCCACTGTGCTAAAGCTAGCCAGCCTAGCCATACACTGGCGTGCGCAGCCCCATaGGCGTGCCGAAGGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: YKQIHLHCAKASQPSHTLACAAP*ACRRRR Trigger: TCTTCGCCTTCGGCACGCTCATGGGGCTGCGCACGC...CAGTGTATGGCTAGGCTGGCTAGCTTTAGCACAGTGGAGATGGATCTGCTTATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | ACTGGGCTGGTTGTCCTTGCAGTGACCAGTATTTCACCTCCTCCATCTGCAGCCCCCAGTGCGGCACCATaGCATGGTCCCAGTGGATAT | + |
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Preference number: 4 (lower is better) Translates to: TGLVVLAVTSISPPPSAAPSAAP*HGPSGY Trigger: ATATCCACTGGGACCATGTCATGGTGCCGCACTGGG...GGCTGCAGATGGAGGAGGTGAAATACTGGTCACTGCAAGGACAACCAGCCCAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | TACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTTCCTTAAGCCATTGCAGCATCTTGGGGTCCCAGTaGGGCACCATGACATGGTCC | + |
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Preference number: 4 (lower is better) Translates to: YLPQLKAEGPGGSLSHCSILGSQ*GTMTWS Trigger: GGACCATGTCATGGTGCCGCACTGGGACCCCAAGAT...GCTGCAATGGCTTAAGGAACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | ACTGGGCTGGTTGTCCTTGCAGTGACCAGTATTTCACCTCCTCCATCTGCAGCCTTGAGCTGGGTCATGTaGTCTCGTAGCACGTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: TGLVVLAVTSISPPPSAALSWVM*SRSTSG Trigger: CCCCGACGTGCTACGAGAGCACATGACCCAGCTCAA...GGCTGCAGATGGAGGAGGTGAAATACTGGTCACTGCAAGGACAACCAGCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | ACCTGGAGGTTCCTTAAGCCATTGCAGCCACTTGCCCCCTCCTGCTTCATCATGTCCAGGGCCGGATGCTaGTATCAATGTACCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TWRFLKPLQPLAPSCFIMSRAGC*YQCTQA Trigger: GGCCTGGGTACATTGATACCAGCATCCGGCCCTGGA...CATGATGAAGCAGGAGGGGGCAAGTGGCTGCAATGGCTTAAGGAACCTCCAGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | ACTGGGCTGGTTGTCCTTGCAGTGACCAGTATTTCACCTCCTCCATCTGCAGCCTTTTCCTTGATGAAGTaGTCTGCCCAGCGGCGGGTC | + |
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Preference number: 4 (lower is better) Translates to: TGLVVLAVTSISPPPSAAFSLMK*SAQRRV Trigger: GACCCGCCGCTGGGCAGAGCACTTCATCAAGGAAAA...GGCTGCAGATGGAGGAGGTGAAATACTGGTCACTGCAAGGACAACCAGCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | CTACAGTTATACCAAAAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCGGCCACGCGGGTAACTaGCCGAGATCTTGGGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LQLYQKQDPVSFGKETLLGHAGN*PRSWGP Trigger: GGGACCCCAAGATCTCGGCCAGTTACCCGCGTGGCC...GAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTTTTGGTATAACTGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | GTATGGGTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGAAGGACCGCAGCTTCTTTGAGCTaGGTCATGTGCTCTCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VWVLSVPDNGAQESTGRTAASLS*VMCSRS Trigger: GCTACGAGAGCACATGACCCAGCTCAAAGAAGCTGC...GGTCCTTCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCACCCATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | GTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGAAGGACCTTAAAGTGTTGTCGTGGACAGTaGTGTCATCCCGGCCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: VLSVPDNGAQESTGRTLKCCRGQ*CHPGPC Trigger: ACAAGGGCCGGGATGACATCACTGTCCACGACAACA...CTTTAAGGTCCTTCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTCATAGTACTTGCCATTaGCCCGGTTCCGAGTATTGT | + |
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Preference number: 4 (lower is better) Translates to: CATPYNYLPQLKAEGPGGHSTCH*PGSEYC Trigger: ACAATACTCGGAACCGGGTCAATGGCAAGTACTATG...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTGGAGGCTCTTGCCCATaGTATTCTTGTAACGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: CATPYNYLPQLKAEGPGGGGSCP*YSCNGR Trigger: TCTACCGTTACAAGAATAGCATGGGCAAGAGCCTCC...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | TACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTTCCTTAAGCCATTGCAGCAGAGTGGGAGGCTCTTaGCCATGCTATTCTTGTAAC | + |
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Preference number: 4 (lower is better) Translates to: YLPQLKAEGPGGSLSHCSRVGGS*PCYSCN Trigger: GTTACAAGAATAGCATGGGCAAGAGCCTCCCACTCT...GCTGCAATGGCTTAAGGAACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | GTGTTCAGCAAGATGTGGGAAGGTGGCTGTCCAAGGGAAGTAAGGTGCATGCTATGTTCCAGGGCCGGATaGTGGTATCAATGTACCCAG | + |
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Preference number: 4 (lower is better) Translates to: VFSKMWEGGCPREVRCMLCSRAG*WYQCTQ Trigger: CTGGGTACATTGATACCAGCATCCGGCCCTGGAACA...TAGCATGCACCTTACTTCCCTTGGACAGCCACCTTCCCACATCTTGCTGAACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | AAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCAAATTCCCCAGCACCCGGTTCCGAGTATTGTaGTTGTTCCAGGGCCGGATG | + |
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Preference number: 4 (lower is better) Translates to: KQDPVSFGKETLLKFPSTRFRVL*LFQGRM Trigger: CATCCGGCCCTGGAACAACCACAATACTCGGAACCG...GGTGCTGGGGAATTTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | AAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCAAATTCCCCAGCACCGTGTTGCGGATAGAGTaGGGCCCATTTTGTGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: KQDPVSFGKETLLKFPSTVLRIE*GPFCVR Trigger: CCTGACACAAAATGGGCCTCACTCTATCCGCAACAC...GGTGCTGGGGAATTTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | AGTGACCAGTATTTCACCTCCTCCATCTGCAGCCATTTCCCAGAGTTAAAGGCTCCACGAGCAGAGCTATaGAGACCCCATCATAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SDQYFTSSICSHFPELKAPRAEL*RPHHRE Trigger: CTCCCTATGATGGGGTCTTCATAGCTCTGCTCGTGG...AGCCTTTAACTCTGGGAAATGGCTGCAGATGGAGGAGGTGAAATACTGGTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CCA 90 bp | GTGTTCAGCAAGATGTGGGAAGGTGGCTGTCCAAGGGAAGTAAGGTGCATGCTAGCTCTAAATACAGGCTaGACTGGTGAGGCAGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: VFSKMWEGGCPREVRCMLALNTG*TGEAGS Trigger: ACTACCTGCCTCACCAGTCCAGCCTGTATTTAGAGC...TAGCATGCACCTTACTTCCCTTGGACAGCCACCTTCCCACATCTTGCTGAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR TCA 90 bp | AAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCAAATTCCCCAGCACCACCTGGATGTTGTACTaGTGGGCAGTGTCCAGAATG | + |
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Preference number: 4 (lower is better) Translates to: KQDPVSFGKETLLKFPSTTWMLY*WAVSRM Trigger: CATTCTGGACACTGCCCATCAGTACAACATCCAGGT...GGTGCTGGGGAATTTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | ATACCAAAAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCAAATTCCCCCTCACAGTCAGGGCTaGCTGCAGGGCTGTCTCATA | + |
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Preference number: 4 (lower is better) Translates to: IPKAGSCKLWEGNLAQIPPHSQG*LQGCLI Trigger: TATGAGACAGCCCTGCAGGCAGCCCTGACTGTGAGG...GGGAATTTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTTTTGGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | TATAAGCAGATCCATCTCCACTGTGCTAAAGCTAGCCAGCCTAGCCATACACTGCATTATCATCAGCCATaGCAGGTGGATACCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: YKQIHLHCAKASQPSHTLHYHQP*QVDTRR Trigger: TCTCCTGGTATCCACCTGGCATGGCTGATGATAATG...CAGTGTATGGCTAGGCTGGCTAGCTTTAGCACAGTGGAGATGGATCTGCTTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR GCA 90 bp | ATACCAAAAGCAGGATCCTGTAAGCTTTGGGAAGGAAACCTTGCTCAAATTCCCCTTGTAACGGTAGAATaGACCGTGGGAGCCATACGT | + |
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Preference number: 4 (lower is better) Translates to: IPKAGSCKLWEGNLAQIPLVTVE*TVGAIR Trigger: ACGTATGGCTCCCACGGTGCATTCTACCGTTACAAG...GGGAATTTGAGCAAGGTTTCCTTCCCAAAGCTTACAGGATCCTGCTTTTGGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTAGCCCGTCCGGGGCCTaGAGCGTGCGCAGCCCCATG | + |
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Preference number: 5 (lower is better) Translates to: CATPYNYLPQLKAEGPGGSPSGA*SVRSPM Trigger: CATGGGGCTGCGCACGCTCAAGGCCCCGGACGGGCT...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTACCCGGTTCCGAGTATaGTGGTTGTTCCAGGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: CATPYNYLPQLKAEGPGGTRFRV*WLFQGR Trigger: CCGGCCCTGGAACAACCACAATACTCGGAACCGGGT...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | GTATGGGTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGAAGGACCCCGGCCCTTGTAGGGTaGGATATGGAAGGCCACCTG | + |
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Preference number: 5 (lower is better) Translates to: VWVLSVPDNGAQESTGRTPALVG*DMEGHL Trigger: CAGGTGGCCTTCCATATCCAACCCTACAAGGGCCGG...GGTCCTTCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCACCCATAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | GTATGGGTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGAAGGACCCCAATGGCAGCTTCTTaGAGCTGGGTCATGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: VWVLSVPDNGAQESTGRTPMAAS*SWVMCS Trigger: AGAGCACATGACCCAGCTCAAAGAAGCTGCCATTGG...GGTCCTTCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCACCCATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | GTATGGGTGCTCAGTGTTCCTGATAATGGGGCACAGGAGTCTACTGGAAGGACCGGGATGAACATCAGGTaGTTGGTATCACAGAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: VWVLSVPDNGAQESTGRTGMNIR*LVSQKF Trigger: GAACTTCTGTGATACCAACAACCTGATGTTCATCCC...GGTCCTTCCAGTAGACTCCTGTGCCCCATTATCAGGAACACTGAGCACCCATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | GTGTTCAGCAAGATGTGGGAAGGTGGCTGTCCAAGGGAAGTAAGGTGCATGCTAGTGTCAATGATGTACTaGATGTTGTCGTGGACAGTG | + |
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Preference number: 5 (lower is better) Translates to: VFSKMWEGGCPREVRCMLVSMMY*MLSWTV Trigger: CACTGTCCACGACAACATCAAGTACATCATTGACAC...TAGCATGCACCTTACTTCCCTTGGACAGCCACCTTCCCACATCTTGCTGAACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS-3UTR CAA 90 bp | TGCGCAACTCCATACAACTACCTGCCTCAGCTGAAAGCTGAGGGACCTGGAGGTATGAACATCAGGTTGTaGGTATCACAGAAGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: CATPYNYLPQLKAEGPGGMNIRL*VSQKFF Trigger: GAAGAACTTCTGTGATACCAACAACCTGATGTTCAT...ACCTCCAGGTCCCTCAGCTTTCAGCTGAGGCAGGTAGTTGTATGGAGTTGCGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS CCA 72 bp | AAGCATGCAGATCGGAGTAGACGCGCAGGCTCTGCCTaGGCGCAGGATCGGCCTCGGCCGGGCCCAGCGAGG | + |
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Preference number: 6 (lower is better) Translates to: KHADRSRRAGSA*AQDRPRPGPAR Trigger: CCTCGCTGGGCCCGGCCGAGGCCGATCCTGCGCCCAGGCAGAGCCTGCGCGTCTACTCCGATCTGCATGCTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS TCA 72 bp | AACTGGCCGAGATCTTGGGGTCCCAGTGCGGCACCATaGCATGGTCCCAGTGGATATAGTGGCCCTCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: NWPRSWGPSAAP*HGPSGYSGPRA Trigger: GGCGCGAGGGCCACTATATCCACTGGGACCATGTCATGGTGCCGCACTGGGACCCCAAGATCTCGGCCAGTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS CCA 72 bp | GTGTACATTCCGTCGAATCCTGCCGCGAGGATGTCGTaGGTGTGGCTCTCCTCCACGAGCAGAGCTATGAAG | + |
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Preference number: 6 (lower is better) Translates to: VYIPSNPAARMS*VWLSSTSRAMK Trigger: CTTCATAGCTCTGCTCGTGGAGGAGAGCCACACCCACGACATCCTCGCGGCAGGATTCGACGGAATGTACAC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS TCA 72 bp | ACCAGGAGAGAACCAAAACTCCAATGGCAGCTTCTTTaGGCTGGGTCATGTGCTCTCGTAGCACGTCGGGGT | + |
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Preference number: 6 (lower is better) Translates to: TRREPKLQWQLL*AGSCALVARRG Trigger: ACCCCGACGTGCTACGAGAGCACATGACCCAGCTCAAAGAAGCTGCCATTGGAGTTTTGGTTCTCTCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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| CDS CAA 72 bp | GTCGTGGACAGTGATGTCATCCCGGCCCTTGTAGGGTaGGATATGGAAGGCCACCTGGATGTTGTACTGATG | + |
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Preference number: 6 (lower is better) Translates to: VVDSDVIPALVG*DMEGHLDVVLM Trigger: CATCAGTACAACATCCAGGTGGCCTTCCATATCCAACCCTACAAGGGCCGGGATGACATCACTGTCCACGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064444.8 |
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