Pregenerated sensors for MANEA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040520Ensembl transcript IDs: ENSMUST00000041374.8, ENSMUST00000153813.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGTCAGAGCAACCTTGCCTGCCGACCTCTGCTGCCCACCATGTTTaGGACATATGTCTTAGTGCTGTTGTGTACGGCAGGCTAACTGGC | + |
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Preference number: 1 (lower is better) Translates to: MSEQPCLPTSAAHHV*DICLSAVVYGRLTG Trigger: GCCAGTTAGCCTGCCGTACACAACAGCACTAAGACATATGTCTCAAACATGGTGGGCAGCAGAGGTCGGCAGGCAAGGTTGCTCTGACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 90 bp | ACATTCCAGAGTAAGAGGGAGACTGACTATGACATGACATGGGTCTaGATGTCAGAGCAACCTTGCCTGCCGACCTCTGCTGCCCACCAT | + |
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Preference number: 1 (lower is better) Translates to: TFQSKRETDYDMTWV*MSEQPCLPTSAAHH Trigger: ATGGTGGGCAGCAGAGGTCGGCAGGCAAGGTTGCTCTGACATTCAGACCCATGTCATGTCATAGTCAGTCTCCCTCTTACTCTGGAATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR GCA 90 bp | AACTCACTTTGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTaGCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTACCAGTCA | + |
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Preference number: 1 (lower is better) Translates to: NSLCRLSWPRTQKPT*LCLPSAGIKGVYQS Trigger: TGACTGGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACAAAGTGAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 90 bp | AGTATGTTCAAACATTCCAGAGTAAGAGGGAGACTGACTATGACATaGCATGGGTCTGAATGTCAGAGCAACCTTGCCTGCCGACCTCTG | + |
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Preference number: 1 (lower is better) Translates to: SMFKHSRVRGRLTMT*HGSECQSNLACRPL Trigger: CAGAGGTCGGCAGGCAAGGTTGCTCTGACATTCAGACCCATGTCATGTCATAGTCAGTCTCCCTCTTACTCTGGAATGTTTGAACATACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR GCA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCAAACCCACCTGCCTCTaGCTCCCAAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLKPTCL*LPSAGI Trigger: AATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTTT...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR GCA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCACTCAGAAACCCACCTaGCTCTGCCTCCCAAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLTQKPT*LCLPSA Trigger: AGCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGT...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR TCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTTACTGTTCGTTAGCCTaGACTTTTGTTGCCAGATGT | + |
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Preference number: 2 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSYCSLA*TFVARC Trigger: ACATCTGGCAACAAAAGTTCAGGCTAACGAACAGTA...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTGAAATGAAGCACATCTaGTTACTGTTCGTTAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSEMKHI*LLFVSL Trigger: CAGGCTAACGAACAGTAACCAGATGTGCTTCATTTC...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR GCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTAGCCTGAACTTTTGTTaGCAGATGTACTTAGCATGT | + |
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Preference number: 2 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSSLNFC*QMYLAC Trigger: ACATGCTAAGTACATCTGGCAACAAAAGTTCAGGCT...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATCTGAATATTTGGTTGTaGAAACCAGAGGGGTGGCTA | + |
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Preference number: 2 (lower is better) Translates to: VRQQRHLEKEAPLTITSNLNIWL*KPEGWL Trigger: TAGCCACCCCTCTGGTTTCCACAACCAAATATTCAG...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CAA 90 bp | GTACTGGGAACAGCAAGAGCTAGAGTGAGCTGTCCACTGAGAAAGTaGAACTCTTATGGACAGTTGCTAGACCTTATTTGCGTAGACTTA | + |
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Preference number: 2 (lower is better) Translates to: VLGTARARVSCPLRK*NSYGQLLDLICVDL Trigger: TAAGTCTACGCAAATAAGGTCTAGCAACTGTCCATAAGAGTTCAACTTTCTCAGTGGACAGCTCACTCTAGCTCTTGCTGTTCCCAGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR TCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATAATATAGCCATCCCTTaGTATCTGTGTAGAACTGGC | + |
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Preference number: 2 (lower is better) Translates to: VRQQRHLEKEAPLTITSNNIAIP*YLCRTG Trigger: GCCAGTTCTACACAGATATCAAGGGATGGCTATATT...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CCA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCTTCGAGAACAGACCATaGCTAACAGAAATAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLFENRP*LTEIEK Trigger: TTTCTCTATTTCTGTTAGCCATGGTCTGTTCTCGAA...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR TCA 90 bp | GTGATCATTGCAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAGCCAGCCGGAATCTaGATATTATTAACAAACTTC | + |
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Preference number: 2 (lower is better) Translates to: VIIAIPAVFPVRQQRHLEKPAGI*ILLTNF Trigger: GAAGTTTGTTAATAATATTCAGATTCCGGCTGGCTT...TTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTGCAATGATCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATTTATGCTATGAAGGCTaGCATGCAATATTTGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: VRQQRHLEKEAPLTITSNLCYEG*HAIFVS Trigger: ACTAACAAATATTGCATGCCAGCCTTCATAGCATAA...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATCATCCCAGAACTTACTaGTTTCTAAATGTCTTTATG | + |
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Preference number: 2 (lower is better) Translates to: VRQQRHLEKEAPLTITSNHPRTY*FLNVFM Trigger: CATAAAGACATTTAGAAACCAGTAAGTTCTGGGATG...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR TCA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGAGACTGACTATGACATaGCATGGGTCTGAATGTCAG | + |
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Preference number: 2 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRRLTMT*HGSECQ Trigger: CTGACATTCAGACCCATGTCATGTCATAGTCAGTCT...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR TCA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGTGTTCACAAGAAACTTaGGAAGTGAGTTTGATCACC | + |
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Preference number: 2 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRCSQET*EVSLIT Trigger: GGTGATCAAACTCACTTCTCAAGTTTCTTGTGAACA...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR GCA 72 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTaGCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: CRLSWPRTQKPT*LCLPSAGIKGV Trigger: CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 72 bp | AGTAAGAGGGAGACTGACTATGACATGACATGGGTCTaGATGTCAGAGCAACCTTGCCTGCCGACCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: SKRETDYDMTWV*MSEQPCLPTSA Trigger: AGCAGAGGTCGGCAGGCAAGGTTGCTCTGACATTCAGACCCATGTCATGTCATAGTCAGTCTCCCTCTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR GCA 72 bp | CTTAGTGCTGTTGTGTACGGCAGGCTAACTGGCTCATaGACTTCTGGGCTCTGTACTGTGTCCACTTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: LSAVVYGRLTGS*TSGLCTVSTFS Trigger: AGAGAAAGTGGACACAGTACAGAGCCCAGAAGTGCATGAGCCAGTTAGCCTGCCGTACACAACAGCACTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 72 bp | AAACATTCCAGAGTAAGAGGGAGACTGACTATGACATaGCATGGGTCTGAATGTCAGAGCAACCTTGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: KHSRVRGRLTMT*HGSECQSNLAC Trigger: GCAGGCAAGGTTGCTCTGACATTCAGACCCATGTCATGTCATAGTCAGTCTCCCTCTTACTCTGGAATGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CAA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATTGTCCACTGAGAAAGTaGAACTCTTATGGACAGTTG | + |
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Preference number: 3 (lower is better) Translates to: VRQQRHLEKEAPLTITSNCPLRK*NSYGQL Trigger: CAACTGTCCATAAGAGTTCAACTTTCTCAGTGGACA...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CCA 72 bp | TTCCCAAGTATTTTGAGCCTTAGTTGGCTGAATATTTaGTTGTGGAAACCAGAGGGGTGGCTATGGTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: FPSILSLSWLNI*LWKPEGWLWSF Trigger: AAAGGACCATAGCCACCCCTCTGGTTTCCACAACCAAATATTCAGCCAACTAAGGCTCAAAATACTTGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 72 bp | AGTGAGTTTGATCACCAGGGGAAGCCAGCCGGAATCTaGATATTATTAACAAACTTCACTGAAGAGACCAGA | + |
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Preference number: 3 (lower is better) Translates to: SEFDHQGKPAGI*ILLTNFTEETR Trigger: TCTGGTCTCTTCAGTGAAGTTTGTTAATAATATTCAGATTCCGGCTGGCTTCCCCTGGTGATCAAACTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CCA 72 bp | CAAACTTCACTGAAGAGACCAGAAATGAAGCACATCTaGTTACTGTTCGTTAGCCTGAACTTTTGTTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: QTSLKRPEMKHI*LLFVSLNFCCQ Trigger: CTGGCAACAAAAGTTCAGGCTAACGAACAGTAACCAGATGTGCTTCATTTCTGGTCTCTTCAGTGAAGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR-3UTR CAA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATCAGACACAATCTTTCTaGTCAGATGTTTTCTCTGTA | + |
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Preference number: 3 (lower is better) Translates to: VRQQRHLEKEAPLTITSNQTQSF*SDVFSV Trigger: TACAGAGAAAACATCTGACAAGAAAGATTGTGTCTG...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 72 bp | ACAATCACTAGCAATATTGTGAATATAGCCATCCCTTaGTATCTGTGTAGAACTGGCTTCAGGACCCAAAGG | + |
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Preference number: 3 (lower is better) Translates to: TITSNIVNIAIP*YLCRTGFRTQR Trigger: CCTTTGGGTCCTGAAGCCAGTTCTACACAGATATCAAGGGATGGCTATATTCACAATATTGCTAGTGATTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR GCA 72 bp | CACATCTGGTTACTGTTCGTTAGCCTGAACTTTTGTTaGCAGATGTACTTAGCATGTACATACTTCTATGTC | + |
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Preference number: 3 (lower is better) Translates to: HIWLLFVSLNFC*QMYLACTYFYV Trigger: GACATAGAAGTATGTACATGCTAAGTACATCTGGCAACAAAAGTTCAGGCTAACGAACAGTAACCAGATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CCA 72 bp | CCAGATGTACTTAGCATGTACATACTTCTATGTCTTTaGACCCAGTATATAAGTATGACTTACTTGGACGTT | + |
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Preference number: 3 (lower is better) Translates to: PDVLSMYILLCL*TQYISMTYLDV Trigger: AACGTCCAAGTAAGTCATACTTATATACTGGGTCCAAAGACATAGAAGTATGTACATGCTAAGTACATCTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR TCA 72 bp | TTTGAGTTTTCTTTCCATAACAAAAACACAGCATGTTaGCTTAAGCTAGTAGACGTGATAAACTGTAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: FEFSFHNKNTAC*LKLVDVINCKG Trigger: TCCCTTACAGTTTATCACGTCTACTAGCTTAAGTCAACATGCTGTGTTTTTGTTATGGAAAGAAAACTCAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTTCATGTGAGTTTCTATaGCAGAAGGGTCTCGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSSCEFL*QKGLES Trigger: GCTCTCGAGACCCTTCTGTCATAGAAACTCACATGA...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | TTCAGACTCAGGTCTTCAGGCTTGCACAGCAAGAACTTTCCCCACAGAGCAGTCGGAGCCAATGTCGTCTaGAGGACTATGTTGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: FRLRSSGLHSKNFPHRAVGANVV*RTMLSL Trigger: CAAGGACAACATAGTCCTCCAGACGACATTGGCTCC...GACTGCTCTGTGGGGAAAGTTCTTGCTGTGCAAGCCTGAAGACCTGAGTCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATTCACCTCAGAGGCTTTaGCTGGCAGCACAGTCATGC | + |
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Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNSPQRL*LAAQSC Trigger: GCATGACTGTGCTGCCAGCCAAAGCCTCTGAGGTGA...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR GCA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCATCATAAGGAGAACTaGGAACACTCTGAGATCCGG | + |
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Preference number: 4 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLHHKEN*EHSEIR Trigger: CCGGATCTCAGAGTGTTCGCAGTTCTCCTTATGATG...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR GCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTTGTTCCATGGTCGGATaGTTGTATCTATGTATCCTG | + |
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Preference number: 4 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSCSMVG*LYLCIL Trigger: CAGGATACATAGATACAAGCATCCGACCATGGAACA...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | TTCAGACTCAGGTCTTCAGGCTTGCACAGCAAGAACTTTCCCCACAGAGCAGTCACTCAGGATAAAAACTaGAGCCAATGTCGTCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: FRLRSSGLHSKNFPHRAVTQDKN*SQCRLE Trigger: CTCCAGACGACATTGGCTCCAGTTTTTATCCTGAGT...GACTGCTCTGTGGGGAAAGTTCTTGCTGTGCAAGCCTGAAGACCTGAGTCTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTGTTCTGAGTGTTCCATaGTCGGATGCTTGTATCTAT | + |
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Preference number: 4 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSVLSVP*SDACIY Trigger: ATAGATACAAGCATCCGACCATGGAACACTCAGAAC...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATATGGTTGGCACCAAGTaGTCAGTAGCTTCGCCATTG | + |
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Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNMVGTK*SVASPL Trigger: CAATGGCGAAGCTACTGATCACTTGGTGCCAACCAT...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTCCAATTCTGATGAGATaGGCCATATGTAAAGCCATT | + |
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Preference number: 4 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSPILMR*AICKAI Trigger: AATGGCTTTACATATGGCTCATCTCATCAGAATTGG...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCATAATACTTCCCATTaGCTCTGTTCCGGGTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLHNTSH*LCSGCS Trigger: AGAACACCCGGAACAGAGTCAATGGGAAGTATTATG...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTTGTTTGTTTCCATGTTaGTTCTATCACTCCTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSCLFPC*FYHSFG Trigger: TCCAAAGGAGTGATAGAATCAACATGGAAACAAACA...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | TTCAGACTCAGGTCTTCAGGCTTGCACAGCAAGAACTTTCCCCACAGAGCAGTCTGTATCTATGTATCCTaGGCCTACACTTGGGATAAA | + |
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Preference number: 4 (lower is better) Translates to: FRLRSSGLHSKNFPHRAVCIYVS*AYTWDK Trigger: TTTATCCCAAGTGTAGGCCCAGGATACATAGATACA...GACTGCTCTGTGGGGAAAGTTCTTGCTGTGCAAGCCTGAAGACCTGAGTCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | TTCAGACTCAGGTCTTCAGGCTTGCACAGCAAGAACTTTCCCCACAGAGCAGTCATCTCGATTGCTATATaGCTCTATGTGAAAAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: FRLRSSGLHSKNFPHRAVISIAI*LYVKSD Trigger: GTCACTTTTCACATAGAGCCATATAGCAATCGAGAT...GACTGCTCTGTGGGGAAAGTTCTTGCTGTGCAAGCCTGAAGACCTGAGTCTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATCATAGACATAAAACATaGGCAGAGAATGCCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNHRHKT*AENAQS Trigger: GGACTGGGCATTCTCTGCCCATGTTTTATGTCTATG...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATCGCATTTGTTTCATGTaGGTTTCTATGACAGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNRICFM*VSMTEG Trigger: CCCTTCTGTCATAGAAACTCACATGAAACAAATGCG...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATACAGCCTTTTCAATTTaGGTTCCTTCATGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNTAFSI*VPSCHS Trigger: TGAGTGGCATGAAGGAACTCAAATTGAAAAGGCTGT...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CAA 72 bp | ACAGCAAGAGCTAGAGTGAGCTGTCCACTGAGAAAGTaGAACTCTTATGGACAGTTGCTAGACCTTATTTGC | + |
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Preference number: 4 (lower is better) Translates to: TARARVSCPLRK*NSYGQLLDLIC Trigger: GCAAATAAGGTCTAGCAACTGTCCATAAGAGTTCAACTTTCTCAGTGGACAGCTCACTCTAGCTCTTGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR TCA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGCTGTTCCGGGTGTTCTaGGTGTTCCATGGTCGGATG | + |
|
Preference number: 4 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRLFRVF*VFHGRM Trigger: CATCCGACCATGGAACACTCAGAACACCCGGAACAG...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATTTTATCCAAAATGGTTaGCACCAAGTGATCAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNFIQNG*HQVISS Trigger: GCTACTGATCACTTGGTGCCAACCATTTTGGATAAA...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | ATCATCAGGAATGTTACAGACACAATCTTTCTTGTCAGATGTTTTCTCTGTATGAAACTGGGGTGGGTCTaGAGTGCAGCACTTAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: IIRNVTDTIFLVRCFLCMKLGWV*SAALRP Trigger: TGGTCTAAGTGCTGCACTCCAGACCCACCCCAGTTT...CATACAGAGAAAACATCTGACAAGAAAGATTGTGTCTGTAACATTCCTGATGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATTTTACCATCAAACTGTaGATTTCCATACCAACTGTA | + |
|
Preference number: 4 (lower is better) Translates to: VRQQRHLEKEAPLTITSNFTIKL*ISIPTV Trigger: TACAGTTGGTATGGAAATCCACAGTTTGATGGTAAA...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | TATGAAGGCTGGCATGCAATATTTGTTAGTGTTACTCAACTGGTCCTCTCTGTAGAGAATGCCCAGTCCTaGTCTTGTATCTATAAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: YEGWHAIFVSVTQLVLSVENAQS*SCIYKR Trigger: CCTTTTATAGATACAAGACCAGGACTGGGCATTCTC...TACAGAGAGGACCAGTTGAGTAACACTAACAAATATTGCATGCCAGCCTTCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGGAGCTTTATCCAAAATaGTTGGCACCAAGTGATCAG | + |
|
Preference number: 4 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRELYPK*LAPSDQ Trigger: CTGATCACTTGGTGCCAACCATTTTGGATAAAGCTC...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CCA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGATTCTATCACTCCTTTaGAAGTCAGCTTTGTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRILSLL*KSALFP Trigger: GGGAAACAAAGCTGACTTCCAAAGGAGTGATAGAAT...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CAA 72 bp | ACCACATCATCAGGAATGTTACAGACACAATCTTTCTaGTCAGATGTTTTCTCTGTATGGTATTATCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: TTSSGMLQTQSF*SDVFSVWYYPL Trigger: CAATGGATAATACCATACAGAGAAAACATCTGACAAGAAAGATTGTGTCTGTAACATTCCTGATGATGTGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| 3UTR CAA 72 bp | TTGATATATACAAGTGGAGTTTTGTTCCCAAGTATTTaGAGCCTTAGTTGGCTGAATATTTGGTTGTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LIYTSGVLFPSI*SLSWLNIWLWK Trigger: TTTCCACAACCAAATATTCAGCCAACTAAGGCTCAAAATACTTGGGAACAAAACTCCACTTGTATATATCAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR GCA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGTTTGATCATCTCGATTaGTATATGGCTCTATGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRFDHLD*YMALCE Trigger: TTCACATAGAGCCATATAGCAATCGAGATGATCAAA...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | TGTAGACTAAGTTGGCCTCGTACTCAGAAACCCACCTGCCTCTGCCTCCCAAGTCAAAGGATGCTGCGTTaGGCCACAGCATCTTTAAGC | + |
|
Preference number: 5 (lower is better) Translates to: CRLSWPRTQKPTCLCLPSQRMLR*ATASLS Trigger: GCTTAAAGATGCTGTGGCCAAACGCAGCATCCTTTG...ACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTACGAGGCCAACTTAGTCTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 90 bp | AGTAATTCAGAGGAGGTAGTTCTTCCAGGTTCACCTCAGAGGCTTTaGCTGGCAGCACAGTCATGCCAGCGCCTTTTAAAGCCTTGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SNSEEVVLPGSPQRL*LAAQSCQRLLKPWC Trigger: ACACCAAGGCTTTAAAAGGCGCTGGCATGACTGTGCTGCCAGCCAAAGCCTCTGAGGTGAACCTGGAAGAACTACCTCCTCTGAATTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 90 bp | ATAAAAACTGGAGCCAATGTCGTCTGGAGGACTATGTTGTCCTTGTaGATAGTTCTTGGCTATCCGAGGGTCCCAGTGTTCCAGGACCGG | + |
|
Preference number: 5 (lower is better) Translates to: IKTGANVVWRTMLSL*IVLGYPRVPVFQDR Trigger: CCGGTCCTGGAACACTGGGACCCTCGGATAGCCAAGAACTATCCACAAGGACAACATAGTCCTCCAGACGACATTGGCTCCAGTTTTTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 90 bp | GGGTCTGGAGTGCAGCACTTAGACCAACTTCATAATACTTCCCATTaGCTCTGTTCCGGGTGTTCTGAGTGTTCCATGGTCGGATGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GSGVQHLDQLHNTSH*LCSGCSECSMVGCL Trigger: CAAGCATCCGACCATGGAACACTCAGAACACCCGGAACAGAGTCAATGGGAAGTATTATGAAGTTGGTCTAAGTGCTGCACTCCAGACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | GTGATCATTGCAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAGGGCCAGAACTCCAATaGAGGCTGAGCGCATTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: VIIAIPAVFPVRQQRHLEGPELQ*RLSAFV Trigger: AACAAATGCGCTCAGCCTCAATTGGAGTTCTGGCCC...TTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTGCAATGATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | GTGATCATTGCAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAACGCCATTGTCATCCCTaGAATCAGGTGGGTACCAAG | + |
|
Preference number: 5 (lower is better) Translates to: VIIAIPAVFPVRQQRHLERHCHP*NQVGTK Trigger: CTTGGTACCCACCTGATTCAAGGGATGACAATGGCG...TTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTGCAATGATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCGACAGCCTTTTCAATTaGAGTTCCTTCATGCCACTC | + |
|
Preference number: 5 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLDSLFN*SSFMPL Trigger: GAGTGGCATGAAGGAACTCAAATTGAAAAGGCTGTC...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 90 bp | CTCCTTTGGAAGTCAGCTTTGTTTCCCGAATGCGCATTTAGTGGATaGAGTTCTGGAAGGAGGTCAAGTCCAAAAGGAGGTCCAAAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: LLWKSALFPECAFSG*SSGRRSSPKGGPKD Trigger: ATCCTTTGGACCTCCTTTTGGACTTGACCTCCTTCCAGAACTTCATCCACTAAATGCGCATTCGGGAAACAAAGCTGACTTCCAAAGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041374.8 ENSMUST00000153813.2 |
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| CDS CCA 90 bp | ATAATACTTCCCATTGACTCTGTTCCGGGTGTTCTGAGTGTTCCATaGTCGGATGCTTGTATCTATGTATCCTGGGCCTACACTTGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: IILPIDSVPGVLSVP*SDACIYVSWAYTWD Trigger: ATCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGACCATGGAACACTCAGAACACCCGGAACAGAGTCAATGGGAAGTATTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 90 bp | CAGTCATGCCAGCGCCTTTTAAAGCCTTGGTGTTTGTTTCCATGTTaGTTCTATCACTCCTTTGGAAGTCAGCTTTGTTTCCCGAATGCG | + |
|
Preference number: 5 (lower is better) Translates to: QSCQRLLKPWCLFPC*FYHSFGSQLCFPNA Trigger: CGCATTCGGGAAACAAAGCTGACTTCCAAAGGAGTGATAGAATCAACATGGAAACAAACACCAAGGCTTTAAAAGGCGCTGGCATGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | CAATTCCAGCTGTGTTTCCAGTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCGTGTTTGTTTCCATGTaGATTCTATCACTCCTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: QFQLCFQSDSRDTWKKRLVFVSM*ILSLLW Trigger: CCAAAGGAGTGATAGAATCAACATGGAAACAAACAC...GAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGACTGGAAACACAGCTGGAATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | GTCAGACAGCAGAGACACCTGGAAAAAGAGGCTCCTCTAACAATCACTAGCAATGTCTGGAGGACTATGTaGTCCTTGTGGATAGTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: VRQQRHLEKEAPLTITSNVWRTM*SLWIVL Trigger: AAGAACTATCCACAAGGACAACATAGTCCTCCAGAC...ATTGCTAGTGATTGTTAGAGGAGCCTCTTTTTCCAGGTGTCTCTGCTGTCTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 90 bp | GAACTCCAATTGAGGCTGAGCGCATTTGTTTCATGTGAGTTTCTATaGCAGAAGGGTCTCGAGAGCTGTAACTTCCTAACTCAGGATAAA | + |
|
Preference number: 5 (lower is better) Translates to: ELQLRLSAFVSCEFL*QKGLESCNFLTQDK Trigger: TTTATCCTGAGTTAGGAAGTTACAGCTCTCGAGACCCTTCTGTCATAGAAACTCACATGAAACAAATGCGCTCAGCCTCAATTGGAGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 90 bp | GGTGTTCTGAGTGTTCCATGGTCGGATGCTTGTATCTATGTATCCTaGGCCTACACTTGGGATAAACATCAAGTTGTTCTTTTCACAAAA | + |
|
Preference number: 5 (lower is better) Translates to: GVLSVPWSDACIYVS*AYTWDKHQVVLFTK Trigger: TTTTGTGAAAAGAACAACTTGATGTTTATCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGACCATGGAACACTCAGAACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | TATGAAGGCTGGCATGCAATATTTGTTAGTGTTACTCAACTGGTCCTCTCTGTAGCGCCTTTTAAAGCCTaGGTGTTTGTTTCCATGTTG | + |
|
Preference number: 5 (lower is better) Translates to: YEGWHAIFVSVTQLVLSVAPFKA*VFVSML Trigger: CAACATGGAAACAAACACCAAGGCTTTAAAAGGCGC...TACAGAGAGGACCAGTTGAGTAACACTAACAAATATTGCATGCCAGCCTTCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 90 bp | AAGCAGGCTGCTGTTGATCCAATGCATACGTCATTCTTTCCTTACTaGATTTTTCAGACCACTTTCGAGTTAGTTCTAGATAAAGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: KQAAVDPMHTSFFPY*IFQTTFELVLDKDL Trigger: CAAGTCTTTATCTAGAACTAACTCGAAAGTGGTCTGAAAAATTCAGTAAGGAAAGAATGACGTATGCATTGGATCAACAGCAGCCTGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 90 bp | TGTAAGAATCATAGACATAAAACATGGGCAGAGAATGCCCAGTCCTaGTCTTGTATCTATAAAAGGCTGGATGGTTTCCATATTTGTCTA | + |
|
Preference number: 5 (lower is better) Translates to: CKNHRHKTWAENAQS*SCIYKRLDGFHICL Trigger: TAGACAAATATGGAAACCATCCAGCCTTTTATAGATACAAGACCAGGACTGGGCATTCTCTGCCCATGTTTTATGTCTATGATTCTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 90 bp | CATGGGCAGAGAATGCCCAGTCCTGGTCTTGTATCTATAAAAGGCTaGATGGTTTCCATATTTGTCTATAATATACTTGATATTTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: HGQRMPSPGLVSIKG*MVSIFVYNILDILM Trigger: CATCAAAATATCAAGTATATTATAGACAAATATGGAAACCATCCAGCCTTTTATAGATACAAGACCAGGACTGGGCATTCTCTGCCCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS-3UTR CAA 90 bp | GTCGTTTTAAAACGTGGAACAGGATTTGAATATAATTCCACAATGATCTTCAGGCCTTCATGCCACTCATaGAAAGAGGTGATGGAAATT | + |
|
Preference number: 5 (lower is better) Translates to: VVLKRGTGFEYNSTMIFRPSCHS*KEVMEI Trigger: AATTTCCATCACCTCTTTCAATGAGTGGCATGAAGG...CCTGAAGATCATTGTGGAATTATATTCAAATCCTGTTCCACGTTTTAAAACGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 72 bp | GAGGAGGTAGTTCTTCCAGGTTCACCTCAGAGGCTTTaGCTGGCAGCACAGTCATGCCAGCGCCTTTTAAAG | + |
|
Preference number: 6 (lower is better) Translates to: EEVVLPGSPQRL*LAAQSCQRLLK Trigger: CTTTAAAAGGCGCTGGCATGACTGTGCTGCCAGCCAAAGCCTCTGAGGTGAACCTGGAAGAACTACCTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 72 bp | CGTCTGGAGGACTATGTTGTCCTTGTGGATAGTTCTTaGCTATCCGAGGGTCCCAGTGTTCCAGGACCGGAT | + |
|
Preference number: 6 (lower is better) Translates to: RLEDYVVLVDSS*LSEGPSVPGPD Trigger: ATCCGGTCCTGGAACACTGGGACCCTCGGATAGCCAAGAACTATCCACAAGGACAACATAGTCCTCCAGACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CAA 72 bp | AGAGGAGGTAGTTCTTCCAGGTTCACCTCAGAGGCTTaGGCTGGCAGCACAGTCATGCCAGCGCCTTTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: RGGSSSRFTSEA*AGSTVMPAPFK Trigger: TTTAAAAGGCGCTGGCATGACTGTGCTGCCAGCCAAAGCCTCTGAGGTGAACCTGGAAGAACTACCTCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CAA 72 bp | ACTGGAGCCAATGTCGTCTGGAGGACTATGTTGTCCTaGTGGATAGTTCTTGGCTATCCGAGGGTCCCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: TGANVVWRTMLS*WIVLGYPRVPV Trigger: CACTGGGACCCTCGGATAGCCAAGAACTATCCACAAGGACAACATAGTCCTCCAGACGACATTGGCTCCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CAA 90 bp | AGGATAAAAACTGGAGCCAATGTCGTCTGGAGGACTATGTTGTCCTaGTGGATAGTTCTTGGCTATCCGAGGGTCCCAGTGTTCCAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: RIKTGANVVWRTMLS*WIVLGYPRVPVFQD Trigger: GTCCTGGAACACTGGGACCCTCGGATAGCCAAGAACTATCCACAAGGACAACATAGTCCTCCAGACGACATTGGCTCCAGTTTTTATCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 72 bp | TTGGCTATCCGAGGGTCCCAGTGTTCCAGGACCGGATaGTTCCAGTGTATATATTTACCATCAAACTGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LAIRGSQCSRTG*FQCIYLPSNCG Trigger: TCCACAGTTTGATGGTAAATATATACACTGGAATCATCCGGTCCTGGAACACTGGGACCCTCGGATAGCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 72 bp | AAGTCAGCTTTGTTTCCCGAATGCGCATTTAGTGGATaGAGTTCTGGAAGGAGGTCAAGTCCAAAAGGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: KSALFPECAFSG*SSGRRSSPKGG Trigger: ACCTCCTTTTGGACTTGACCTCCTTCCAGAACTTCATCCACTAAATGCGCATTCGGGAAACAAAGCTGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041374.8 ENSMUST00000153813.2 |
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| CDS CAA 90 bp | ACAGTCATGCCAGCGCCTTTTAAAGCCTTGGTGTTTGTTTCCATGTaGATTCTATCACTCCTTTGGAAGTCAGCTTTGTTTCCCGAATGC | + |
|
Preference number: 6 (lower is better) Translates to: TVMPAPFKALVFVSM*ILSLLWKSALFPEC Trigger: GCATTCGGGAAACAAAGCTGACTTCCAAAGGAGTGATAGAATCAACATGGAAACAAACACCAAGGCTTTAAAAGGCGCTGGCATGACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 72 bp | TTGAGGCTGAGCGCATTTGTTTCATGTGAGTTTCTATaGCAGAAGGGTCTCGAGAGCTGTAACTTCCTAACT | + |
|
Preference number: 6 (lower is better) Translates to: LRLSAFVSCEFL*QKGLESCNFLT Trigger: AGTTAGGAAGTTACAGCTCTCGAGACCCTTCTGTCATAGAAACTCACATGAAACAAATGCGCTCAGCCTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 72 bp | AGTGTTCCATGGTCGGATGCTTGTATCTATGTATCCTaGGCCTACACTTGGGATAAACATCAAGTTGTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SVPWSDACIYVS*AYTWDKHQVVL Trigger: AAGAACAACTTGATGTTTATCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGACCATGGAACACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CAA 72 bp | CCAGCGCCTTTTAAAGCCTTGGTGTTTGTTTCCATGTaGATTCTATCACTCCTTTGGAAGTCAGCTTTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: PAPFKALVFVSM*ILSLLWKSALF Trigger: AAACAAAGCTGACTTCCAAAGGAGTGATAGAATCAACATGGAAACAAACACCAAGGCTTTAAAAGGCGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CAA 72 bp | TTTCAGACCACTTTCGAGTTAGTTCTAGATAAAGACTaGGCTTATGAGGCCGGTAATCCAGGTATATCGTGT | + |
|
Preference number: 6 (lower is better) Translates to: FQTTFELVLDKD*AYEAGNPGISC Trigger: ACACGATATACCTGGATTACCGGCCTCATAAGCCAAGTCTTTATCTAGAACTAACTCGAAAGTGGTCTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS CCA 72 bp | TCGGATGCTTGTATCTATGTATCCTGGGCCTACACTTaGGATAAACATCAAGTTGTTCTTTTCACAAAAGGA | + |
|
Preference number: 6 (lower is better) Translates to: SDACIYVSWAYT*DKHQVVLFTKG Trigger: TCCTTTTGTGAAAAGAACAACTTGATGTTTATCCCAAGTGTAGGCCCAGGATACATAGATACAAGCATCCGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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| CDS TCA 72 bp | ACAAAAGGATTTCAGGTTATTCCAATTCTGATGAGATaGGCCATATGTAAAGCCATTTGTGGCAAAATATGT | + |
|
Preference number: 6 (lower is better) Translates to: TKGFQVIPILMR*AICKAICGKIC Trigger: ACATATTTTGCCACAAATGGCTTTACATATGGCTCATCTCATCAGAATTGGAATAACCTGAAATCCTTTTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041374.8 |
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