Pregenerated sensors for MANBAL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063019

Ensembl transcript IDs: ENSMUST00000081202.6

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	TTCAGGACCTGGCTGGCTCACACTGCACGGCCATGCATCCTGACCTaGACACGTGTGAAGTTCTGTGCTCACAAAAGACAAATGTGGCCC	+
Preference number: 1 (lower is better) Translates to: FRTWLAHTARPCILT*TRVKFCAHKRQMWP Trigger: GGGCCACATTTGTCTTTTGTGAGCACAGAACTTCACACGTGTTCAGGTCAGGATGCATGGCCGTGCAGTGTGAGCCAGCCAGGTCCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR-3UTR TCA 90 bp	ACAAAAGACAAATGTGGCCCAAGCACAGGGAGAGGGTATGCCTGCAGCCTTAGGAATCCTCTCAGACTCTaGGCCGAGGACAGAGACAGT	+
Preference number: 2 (lower is better) Translates to: TKDKCGPSTGRGYACSLRNPLRL*AEDRDS Trigger: ACTGTCTCTGTCCTCGGCTCAGAGTCTGAGAGGATT...CCTAAGGCTGCAGGCATACCCTCTCCCTGTGCTTGGGCCACATTTGTCTTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR-3UTR GCA 90 bp	TCTGTGCCCAGGAAATCTGGCCTCATTCAGCTGTACCTTCCCCTGCAGGCACCACTTGAGAATCTCCCGTaGACCACAGAGAGAAAGAAG	+
Preference number: 2 (lower is better) Translates to: SVPRKSGLIQLYLPLQAPLENLP*TTERKK Trigger: CTTCTTTCTCTCTGTGGTGCACGGGAGATTCTCAAG...TGGTGCCTGCAGGGGAAGGTACAGCTGAATGAGGCCAGATTTCCTGGGCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR-3UTR CAA 90 bp	ACGGCCATGCATCCTGACCTGAACACGTGTGAAGTTCTGTGCTCACAAAAGACACCCGAGGCTGCAGCCTaGGGCTCCTCGGCCTCGGAT	+
Preference number: 3 (lower is better) Translates to: TAMHPDLNTCEVLCSQKTPEAAA*GSSASD Trigger: ATCCGAGGCCGAGGAGCCCAAGGCTGCAGCCTCGGG...TGTCTTTTGTGAGCACAGAACTTCACACGTGTTCAGGTCAGGATGCATGGCCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR GCA 72 bp	AACCCCCAACATCTTCAGGACCTGGCTGGCTCACACTaGACGGCCATGCATCCTGACCTGAACACGTGTGAA	+
Preference number: 3 (lower is better) Translates to: NPQHLQDLAGSH*TAMHPDLNTCE Trigger: TTCACACGTGTTCAGGTCAGGATGCATGGCCGTGCAGTGTGAGCCAGCCAGGTCCTGAAGATGTTGGGGGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR TCA 72 bp	GACCTGACTCGGAACCCTCGGGGCAGTGTTTGCTCTTaGGAATCTCCCGTGCACCACAGAGAGAAAGAAGAG	+
Preference number: 3 (lower is better) Translates to: DLTRNPRGSVCS*ESPVHHREKEE Trigger: CTCTTCTTTCTCTCTGTGGTGCACGGGAGATTCTCAAGAGCAAACACTGCCCCGAGGGTTCCGAGTCAGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR GCA 72 bp	ACCCTCGGGGCAGTGTTTGCTCTTGAGAATCTCCCGTaGACCACAGAGAGAAAGAAGAGGAAGTGGTGGTCT	+
Preference number: 3 (lower is better) Translates to: TLGAVFALENLP*TTERKKRKWWS Trigger: AGACCACCACTTCCTCTTCTTTCTCTCTGTGGTGCACGGGAGATTCTCAAGAGCAAACACTGCCCCGAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR TCA 72 bp	TGGCTGGCTCACACTGCACGGCCATGCATCCTGACCTaGACACGTGTGAAGTTCTGTGCTCACAAAAGACAA	+
Preference number: 3 (lower is better) Translates to: WLAHTARPCILT*TRVKFCAHKRQ Trigger: TTGTCTTTTGTGAGCACAGAACTTCACACGTGTTCAGGTCAGGATGCATGGCCGTGCAGTGTGAGCCAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR GCA 72 bp	GACAAATGTGGCCCAAGCACAGGGAGAGGGTATGCCTaGAGCCTTAGGCAACAATTCCATGCTGTTAGTGAG	+
Preference number: 3 (lower is better) Translates to: DKCGPSTGRGYA*SLRQQFHAVSE Trigger: CTCACTAACAGCATGGAATTGTTGCCTAAGGCTGCAGGCATACCCTCTCCCTGTGCTTGGGCCACATTTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR CCA 72 bp	ACACGTGTGAAGTTCTGTGCTCACAAAAGACAAATGTaGCCCAAGCACAGGGAGAGGGTATGCCTGCAGCCT	+
Preference number: 3 (lower is better) Translates to: TRVKFCAHKRQM*PKHRERVCLQP Trigger: AGGCTGCAGGCATACCCTCTCCCTGTGCTTGGGCCACATTTGTCTTTTGTGAGCACAGAACTTCACACGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR GCA 72 bp	GCCATGCATCCTGACCTGAACACGTGTGAAGTTCTGTaGTCACAAAAGACAAATGTGGCCCAAGCACAGGGA	+
Preference number: 3 (lower is better) Translates to: AMHPDLNTCEVL*SQKTNVAQAQG Trigger: TCCCTGTGCTTGGGCCACATTTGTCTTTTGTGAGCACAGAACTTCACACGTGTTCAGGTCAGGATGCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
3UTR CAA 72 bp	TCGAGCCCACTGGACTCCAGGACTAATGTGAATACGTaGCCCTGTGAGCCTGACCTGACTCGGAACCCTCGG	+
Preference number: 4 (lower is better) Translates to: SSPLDSRTNVNT*PCEPDLTRNPR Trigger: CCGAGGGTTCCGAGTCAGGTCAGGCTCACAGGGCAACGTATTCACATTAGTCCTGGAGTCCAGTGGGCTCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
CDS-3UTR CCA 90 bp	TCTGTGCCCAGGAAATCTGGCCTCATTCAGCTGTACCTTCCCCTGCAGGCACCAAACCTTGGGCTTCTTTaGCCCCTCTGCACTTCTGGG	+
Preference number: 4 (lower is better) Translates to: SVPRKSGLIQLYLPLQAPNLGLL*PLCTSG Trigger: CCCAGAAGTGCAGAGGGGCCAAAGAAGCCCAAGGTT...TGGTGCCTGCAGGGGAAGGTACAGCTGAATGAGGCCAGATTTCCTGGGCACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
CDS-3UTR GCA 90 bp	ACGGCCATGCATCCTGACCTGAACACGTGTGAAGTTCTGTGCTCACAAAAGACACTTCTTTGGCCCCTCTaGACTTCTGGGCTCAGCCTG	+
Preference number: 4 (lower is better) Translates to: TAMHPDLNTCEVLCSQKTLLWPL*TSGLSL Trigger: CAGGCTGAGCCCAGAAGTGCAGAGGGGCCAAAGAAG...TGTCTTTTGTGAGCACAGAACTTCACACGTGTTCAGGTCAGGATGCATGGCCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
CDS-3UTR CCA 90 bp	AACACGTGTGAAGTTCTGTGCTCACAAAAGACAAATGTGGCCCAAGCACAGGGAGCCCCTCTGCACTTCTaGGCTCAGCCTGTTCTGCCT	+
Preference number: 4 (lower is better) Translates to: NTCEVLCSQKTNVAQAQGAPLHF*AQPVLP Trigger: AGGCAGAACAGGCTGAGCCCAGAAGTGCAGAGGGGC...TCCCTGTGCTTGGGCCACATTTGTCTTTTGTGAGCACAGAACTTCACACGTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
CDS-3UTR CCA 90 bp	TGTAGTCAGAGGGAGTTTCAATCCTCTCAGACTCTGAGCCGAGGACAGAGACAGTGTTGGTGGAAGCGATaGCAACCTTGGGCTTCTTTG	+
Preference number: 4 (lower is better) Translates to: CSQREFQSSQTLSRGQRQCWWKR*QPWASL Trigger: CAAAGAAGCCCAAGGTTGCCATCGCTTCCACCAACA...CTGTCTCTGTCCTCGGCTCAGAGTCTGAGAGGATTGAAACTCCCTCTGACTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
CDS-3UTR CAA 90 bp	GCTGGTTCCCAGGAGGGCTGTCCCCGAGGCTGCAGCCTTGGGCTCCTCGGCCTCTCCTTCTTCGGCCTCTaGTTGGTGGAAGCGATGGCA	+
Preference number: 5 (lower is better) Translates to: AGSQEGCPRGCSLGLLGLSFFGL*LVEAMA Trigger: TGCCATCGCTTCCACCAACAAGAGGCCGAAGAAGGA...GAGGCCGAGGAGCCCAAGGCTGCAGCCTCGGGGACAGCCCTCCTGGGAACCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081202.6
CDS-3UTR CAA 90 bp	GACCTGAACACGTGTGAAGTTCTGTGCTCACAAAAGACAAATGTGGCCCAAGCAGAAGCGATGGCAACCTaGGGCTTCTTTGGCCCCTCT	+
Preference number: 5 (lower is better) Translates to: DLNTCEVLCSQKTNVAQAEAMAT*GFFGPS Trigger: AGAGGGGCCAAAGAAGCCCAAGGTTGCCATCGCTTC...TGCTTGGGCCACATTTGTCTTTTGTGAGCACAGAACTTCACACGTGTTCAGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081202.6