RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAN2C1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032295

Ensembl transcript IDs: ENSMUST00000034836.16, ENSMUST00000159101.2, ENSMUST00000159130.8, ENSMUST00000160147.8, ENSMUST00000160426.8, ENSMUST00000160584.8, ENSMUST00000161182.8, ENSMUST00000161338.2, ENSMUST00000161393.8, ENSMUST00000161663.8, ENSMUST00000162915.8

Found 529 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCGCTTCCAGGGCAGTGTGTTGATAATGAGGAGGCCCTTGGGACCTaGCTCCCCGGCACACAAGGCTGCGGCTGCAGCACTGAGCAGTGG +
Preference number: 1 (lower is better)
Translates to: ALPGQCVDNEEALGT*LPGTQGCGCSTEQW
Trigger: CCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTCCTCATTATCAACACACTGCCCTGGAAGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CCA 90 bp ACATCTAGCACAACCTCCTGGCTGAGCCGGCTGTTGGGGCTGATCTaGAGCAGGAACCAGGCACTGCCCCGGAGGCCACCTTCAGTGCCC +
Preference number: 1 (lower is better)
Translates to: TSSTTSWLSRLLGLI*SRNQALPRRPPSVP
Trigger: GGGCACTGAAGGTGGCCTCCGGGGCAGTGCCTGGTTCCTGCTCCAGATCAGCCCCAACAGCCGGCTCAGCCAGGAGGTTGTGCTAGATGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR GCA 90 bp GAGGAGGCCCTTGGGACCTGGCTCCCCGGCACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTTGCCATGAGAACGGATGTCTTCATA +
Preference number: 1 (lower is better)
Translates to: EEALGTWLPGTQGCG*STEQWVAMRTDVFI
Trigger: TATGAAGACATCCGTTCTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CCA 90 bp CCCTTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTaGACATCCCGGTGGAACACAGCCAGTTTAGCCTGGCTCAGCTGG +
Preference number: 1 (lower is better)
Translates to: PLATPSNSSRSTRRL*TSRWNTASLAWLSW
Trigger: CCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR TCA 90 bp ATGTCCCTCCTGCAAGATAGGAGGAGCGGGTTGGGCAGGAAGGACTaGGACCAACTGCCAGGACACAGGTACCAGGTCCTGGACGAGCCT +
Preference number: 1 (lower is better)
Translates to: MSLLQDRRSGLGRKD*DQLPGHRYQVLDEP
Trigger: AGGCTCGTCCAGGACCTGGTACCTGTGTCCTGGCAGTTGGTCTCAGTCCTTCCTGCCCAACCCGCTCCTCCTATCTTGCAGGAGGGACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR GCA 90 bp CAGGGGCTGCGATCATGCTTCCCTTCCCGGCCCCCAGAAGCCCATTaGAGGCTACTTCCACATAGAGAGTCAAGCTCCGAGGGTCTGATG +
Preference number: 1 (lower is better)
Translates to: QGLRSCFPSRPPEAH*RLLPHRESSSEGLM
Trigger: CATCAGACCCTCGGAGCTTGACTCTCTATGTGGAAGTAGCCTGCAATGGGCTTCTGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 90 bp CATCAGTGTTGCTCAGCCGCTTCAATCGGTCCAACATGGTCTGTGTaGGGCCACCTCCCCCATCCCCGAAGCCGAAGAGGAAGCCACTGT +
Preference number: 1 (lower is better)
Translates to: HQCCSAASIGPTWSV*GHLPHPRSRRGSHC
Trigger: ACAGTGGCTTCCTCTTCGGCTTCGGGGATGGGGGAGGTGGCCCCACACAGACCATGTTGGACCGATTGAAGCGGCTGAGCAACACTGATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CCA 90 bp GTGGAACACAGCCAGTTTAGCCTGGCTCAGCTGGAACATCTTCTCTaGGTCAGGGGCTGCGATCATGCTTCCCTTCCCGGCCCCCAGAAG +
Preference number: 1 (lower is better)
Translates to: VEHSQFSLAQLEHLL*VRGCDHASLPGPQK
Trigger: CTTCTGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 90 bp CCTCCCCTGTACCCAAACCATGACAGACCCAGCCTAAGGCTCCAGTaGGTCAGCCCAGCCCTCTTCCTATCTAGGTCTACCCTGCAGACC +
Preference number: 1 (lower is better)
Translates to: PPLYPNHDRPSLRLQ*VSPALFLSRSTLQT
Trigger: GGTCTGCAGGGTAGACCTAGATAGGAAGAGGGCTGGGCTGACCCACTGGAGCCTTAGGCTGGGTCTGTCATGGTTTGGGTACAGGGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 90 bp CATGTGCACAGCTGTCCTGAGTCTCTCTCCAGTGCCGTGAAGAGCTaGCCAGGAGAAGATAGCTGCACCCTGGGCAGCCCATCAGTGTTG +
Preference number: 1 (lower is better)
Translates to: HVHSCPESLSSAVKS*PGEDSCTLGSPSVL
Trigger: CAACACTGATGGGCTGCCCAGGGTGCAGCTATCTTCTCCTGGCCAGCTCTTCACGGCACTGGAGAGAGACTCAGGACAGCTGTGCACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR GCA 90 bp ACAGGCACAAACTGTCCTCGGCAGGCAAACTCCTGGAGCCGGGCATaGAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTTGTGCC +
Preference number: 1 (lower is better)
Translates to: TGTNCPRQANSWSRA*RPGYWLLTHSSCCA
Trigger: GGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTGCCGAGGACAGTTTGTGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR GCA 90 bp CTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTTaGCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGC +
Preference number: 1 (lower is better)
Translates to: LRWKPDPAHTGNLRS*PWKYSPSLQPVQSS
Trigger: GCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR CCA 90 bp GGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTaGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCCCAG +
Preference number: 1 (lower is better)
Translates to: GCSPSLAPGGIRVYG*LFSQFNTCPQLPSQ
Trigger: CTGGGAGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR CCA 90 bp CTGTGGACATCCCGGTGGAACACAGCCAGTTTAGCCTGGCTCAGCTaGAACATCTTCTCTGGGTCAGGGGCTGCGATCATGCTTCCCTTC +
Preference number: 1 (lower is better)
Translates to: LWTSRWNTASLAWLS*NIFSGSGAAIMLPF
Trigger: GAAGGGAAGCATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 90 bp CCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTGGACATCCCGGTaGAACACAGCCAGTTTAGCCTGGCTCAGCTGGAACATCTTCTCT +
Preference number: 1 (lower is better)
Translates to: PSNSSRSTRRLWTSR*NTASLAWLSWNIFS
Trigger: AGAGAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR GCA 90 bp TGCAAGATAGGAGGAGCGGGTTGGGCAGGAAGGACTGAGACCAACTaGCAGGACACAGGTACCAGGTCCTGGACGAGCCTTACATTAAGG +
Preference number: 1 (lower is better)
Translates to: CKIGGAGWAGRTETN*QDTGTRSWTSLTLR
Trigger: CCTTAATGTAAGGCTCGTCCAGGACCTGGTACCTGTGTCCTGGCAGTTGGTCTCAGTCCTTCCTGCCCAACCCGCTCCTCCTATCTTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR GCA 90 bp GGCTCCAGTGGGTCAGCCCAGCCCTCTTCCTATCTAGGTCTACCCTaGAGACCTATGTGGTGCCCCTATTGTGCTGTTACTTCATGTCCC +
Preference number: 1 (lower is better)
Translates to: GSSGSAQPSSYLGLP*RPMWCPYCAVTSCP
Trigger: GGGACATGAAGTAACAGCACAATAGGGGCACCACATAGGTCTGCAGGGTAGACCTAGATAGGAAGAGGGCTGGGCTGACCCACTGGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 90 bp TTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGCCAGTTaGATCCAGTCTCACCCGGATGATGCCGTTGTCCAAAGTCACAGA +
Preference number: 1 (lower is better)
Translates to: FPARSHQDQGGKTAS*IQSHPDDAVVQSHR
Trigger: TCTGTGACTTTGGACAACGGCATCATCCGGGTGAGACTGGATCCAACTGGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR CCA 90 bp TGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTTGCCCCTaGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATG +
Preference number: 1 (lower is better)
Translates to: WKPDPAHTGNLRSCP*KYSPSLQPVQSSLM
Trigger: CATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR TCA 90 bp TCACAGCTGTCGACCAGCTCCGGGCACATTTCCTCACAGTCTCCTTaGAGGGCCAAAGCCAGGCTGTATCAATGTGACAGTGTCCCATGG +
Preference number: 1 (lower is better)
Translates to: SQLSTSSGHISSQSP*RAKARLYQCDSVPW
Trigger: CCATGGGACACTGTCACATTGATACAGCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAAATGTGCCCGGAGCTGGTCGACAGCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR TCA 90 bp CCCATTGCAGGCTACTTCCACATAGAGAGTCAAGCTCCGAGGGTCTaGTGCTCGCAGCCTCTCGCTCAGGACATAACTGGTCTTTTCGCC +
Preference number: 1 (lower is better)
Translates to: PIAGYFHIESQAPRV*CSQPLAQDITGLFA
Trigger: GGCGAAAAGACCAGTTATGTCCTGAGCGAGAGGCTGCGAGCATCAGACCCTCGGAGCTTGACTCTCTATGTGGAAGTAGCCTGCAATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 90 bp CATGGATGGTATGCTGGCTTTCACCTCCATGTTGGCCAAAGAACTTaGAGGCCAGGGCTTTGGCTGCTGGGTAAGTCTCAGGCTGAGCAG +
Preference number: 1 (lower is better)
Translates to: HGWYAGFHLHVGQRT*RPGLWLLGKSQAEQ
Trigger: CTGCTCAGCCTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR CCA 90 bp TGGACCAGCACTCGGGAGCCATCCAGCCCCTCCCAGAAAAAGGTATaGTGTGGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGTC +
Preference number: 1 (lower is better)
Translates to: WTSTREPSSPSQKKV*CGKELTKFQLSFWV
Trigger: GACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTGGTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR CCA 90 bp AAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGATaGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTTGCCCC +
Preference number: 1 (lower is better)
Translates to: KVPWLMVTRGLQYLR*KPDPAHTGNLRSCP
Trigger: GGGGCAAGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR GCA 90 bp AGACCTATGTGGTGCCCCTATTGTGCTGTTACTTCATGTCCCTCCTaGAAGATAGGAGGAGCGGGTTGGGCAGGAAGGACTGAGACCAAC +
Preference number: 1 (lower is better)
Translates to: RPMWCPYCAVTSCPS*KIGGAGWAGRTETN
Trigger: GTTGGTCTCAGTCCTTCCTGCCCAACCCGCTCCTCCTATCTTGCAGGAGGGACATGAAGTAACAGCACAATAGGGGCACCACATAGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 90 bp CAGCACTCGGGAGCCATCCAGCCCCTCCCAGAAAAAGGTATGGTGTaGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGTCAGGAA +
Preference number: 1 (lower is better)
Translates to: QHSGAIQPLPEKGMV*KGVDQVPAQFLGQE
Trigger: TTCCTGACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR CCA 90 bp CTCGCAGCCTCTCGCTCAGGACATAACTGGTCTTTTCGCCTTCTTTaGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGCTTT +
Preference number: 1 (lower is better)
Translates to: LAASRSGHNWSFRLL*SNPGQVPHHARQGF
Trigger: AAAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCGAGAGGCTGCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
3UTR CCA 90 bp GGCTTTCACCTCCATGTTGGCCAAAGAACTTGGAGGCCAGGGCTTTaGCTGCTGGGTAAGTCTCAGGCTGAGCAGGGTCACATATGTTCA +
Preference number: 1 (lower is better)
Translates to: GFHLHVGQRTWRPGL*LLGKSQAEQGHICS
Trigger: TGAACATATGTGACCCTGCTCAGCCTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR GCA 90 bp TTCACCTCCATGTTGGCCAAAGAACTTGGAGGCCAGGGCTTTGGCTaGTGGGTAAGTCTCAGGCTGAGCAGGGTCACATATGTTCACCAT +
Preference number: 1 (lower is better)
Translates to: FTSMLAKELGGQGFG*WVSLRLSRVTYVHH
Trigger: ATGGTGAACATATGTGACCCTGCTCAGCCTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAACATGGAGGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 90 bp GCCAAAGCCAGGCTGTATCAATGTGACAGTGTCCCATGGCATGGATaGTATGCTGGCTTTCACCTCCATGTTGGCCAAAGAACTTGGAGG +
Preference number: 1 (lower is better)
Translates to: AKARLYQCDSVPWHG*YAGFHLHVGQRTWR
Trigger: CCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGCCTGGCTTTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR TCA 90 bp CTGCCTGGCCCAGCACAGGCTTCCGTGTCTCTAGATGGTAATCCATaGCATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACA +
Preference number: 1 (lower is better)
Translates to: LPGPAQASVSLDGNP*HPMHPSTMAHHQTT
Trigger: TGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCATCTAGAGACACGGAAGCCTGTGCTGGGCCAGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
3UTR-3UTR GCA 90 bp GTGGGCCTCGTGCCAGTGCACCTCAGTGTGGAAGCGGACATAGGGGCAGCCAACGCAGGAACCAGGCACTaGCCCGGAGGCCACCTTCAG +
Preference number: 2 (lower is better)
Translates to: VGLVPVHLSVEADIGAANAGTRH*PGGHLQ
Trigger: CTGAAGGTGGCCTCCGGGGCAGTGCCTGGTTCCTGC...GTTGGCTGCCCCTATGTCCGCTTCCACACTGAGGTGCACTGGCACGAGGCCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR CAA 90 bp ACTTCAGTGCGCTTCCAGGGCAGTGTGTTGATAATGAGGAGGCCCTaGGGACCTGGCTCCCCGGCACACAAGGCTGCGGCTGCAGCACTG +
Preference number: 2 (lower is better)
Translates to: TSVRFQGSVLIMRRP*GPGSPAHKAAAAAL
Trigger: CAGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTCCTCATTATCAACACACTGCCCTGGAAGCGCACTGAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR GCA 90 bp GTGGGCCTCGTGCCAGTGCACCTCAGTGTGGAAGCGGACATAGGGGCAGCCAACCAGCAATGGCTTCCCTaGCAGAAGCCACCAGGACCA +
Preference number: 2 (lower is better)
Translates to: VGLVPVHLSVEADIGAANQQWLP*QKPPGP
Trigger: TGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTG...GTTGGCTGCCCCTATGTCCGCTTCCACACTGAGGTGCACTGGCACGAGGCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR-3UTR CCA 90 bp ACTGTCCTCGGCAGGCAAACTCCTGGAGCCGGGCATGCAGACCAGGGTACTGGCTGGAGGCCAGGGCTTTaGCTGCTGGGTAAGTCTCAG +
Preference number: 2 (lower is better)
Translates to: TVLGRQTPGAGHADQGTGWRPGL*LLGKSQ
Trigger: CTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCA...GCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTGCCGAGGACAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR CCA 90 bp GCCCTTGGGACCTGGCTCCCCGGCACACAAGGCTGCGGCTGCAGCACTGAGCAGGCATGGATGGTATGCTaGCTTTCACCTCCATGTTGG +
Preference number: 2 (lower is better)
Translates to: ALGTWLPGTQGCGCSTEQAWMVC*LSPPCW
Trigger: CCAACATGGAGGTGAAAGCCAGCATACCATCCATGC...CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CAA 90 bp CCATCCCCGAAGCCGAAGAGGAAGCCACTGTGGTTGGTCCGCCCCTaGTCCCGGTTGTTGGTCACAGTCTTCAGCACCTCCTCCACACTG +
Preference number: 2 (lower is better)
Translates to: PSPKPKRKPLWLVRP*SRLLVTVFSTSSTL
Trigger: CAGTGTGGAGGAGGTGCTGAAGACTGTGACCAACAACCGGGACAAGGGGCGGACCAACCACAGTGGCTTCCTCTTCGGCTTCGGGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR CCA 90 bp GCTGTCCTCCCCGAGGCCCTTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGTTAGCCTGGCTCAGCTaGAACATCTTCTCTGGGTCA +
Preference number: 2 (lower is better)
Translates to: AVLPEALGHTQQQLQVHQLAWLS*NIFSGS
Trigger: TGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAA...CTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGGCCTCGGGGAGGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp TTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTGGACATCCCGGGTTGGCCAAAGAACTTaGAGGCCAGGGCTTTGGCTG +
Preference number: 2 (lower is better)
Translates to: LATPSNSSRSTRRLWTSRVGQRT*RPGLWL
Trigger: CAGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAAC...CCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR TCA 90 bp GCCTCACCATGGCCTCTCCACTGGGAAGGTTCCCATCCATTTCTACCCAGGTGCCTGTGTTCTGCTCCATaGGCGTCACAGCTGTCGACC +
Preference number: 2 (lower is better)
Translates to: ASPWPLHWEGSHPFLPRCLCSAP*ASQLST
Trigger: GGTCGACAGCTGTGACGCTCATGGAGCAGAACACAG...GCACCTGGGTAGAAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGGTGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR TCA 90 bp AGTGGGTCAGCCCAGCCCTCTTCCTATCTAGGTCTACCCTGCAGACCTATGTGGACCTCCAGTTGCTCCTaGCCTCTAGGCCTCAGGTCC +
Preference number: 2 (lower is better)
Translates to: SGSAQPSSYLGLPCRPMWTSSCS*PLGLRS
Trigger: GGACCTGAGGCCTAGAGGTCAGGAGCAACTGGAGGT...CCACATAGGTCTGCAGGGTAGACCTAGATAGGAAGAGGGCTGGGCTGACCCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR CCA 90 bp CATGCTTCCCTTCCCGGCCCCCAGAAGCCCATTGCAGGCTACTTCCACATAGAGTGGAGGCCAGGGCTTTaGCTGCTGGGTAAGTCTCAG +
Preference number: 2 (lower is better)
Translates to: HASLPGPQKPIAGYFHIEWRPGL*LLGKSQ
Trigger: CTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCA...CTCTATGTGGAAGTAGCCTGCAATGGGCTTCTGGGGGCCGGGAAGGGAAGCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp CCAGGTGGGAAGTGGACCAGCACTCGGGAGCCATCCAGCCCCTCCCAGAAAAAGTGCAGAAAGAAGTTCTaGCCCTGCAGGAACTGCCTC +
Preference number: 2 (lower is better)
Translates to: PGGKWTSTREPSSPSQKKCRKKF*PCRNCL
Trigger: GAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCA...CTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTGGTCCACTTCCCACCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR GCA 90 bp TGGGAAGTGGACCAGCACTCGGGAGCCATCCAGCCCCTCCCAGAAAAAGGTATGCCATTTCTACCCAGGTaGCCCCCACAGGCACAAACT +
Preference number: 2 (lower is better)
Translates to: WEVDQHSGAIQPLPEKGMPFLPR*PPQAQT
Trigger: AGTTTGTGCCTGTGGGGGGCACCTGGGTAGAAATGG...CATACCTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTGGTCCACTTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR GCA 90 bp GTTGGGGCTGATCTGGAGCAGGAACCAGGCACTGCCCCGGAGGCCACCTTCAGTATCCATGACATCCCATaGATCCCAGTACAATGGCAC +
Preference number: 2 (lower is better)
Translates to: VGADLEQEPGTAPEATFSIHDIP*IPVQWH
Trigger: GTGCCATTGTACTGGGATGCATGGGATGTCATGGAT...ACTGAAGGTGGCCTCCGGGGCAGTGCCTGGTTCCTGCTCCAGATCAGCCCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR-3UTR TCA 90 bp AGGAACTGCCTCACCATGGCCTCTCCACTGGGAAGGTTCCCATCCATTTCTACCCTGTGTTCTGCTCCATaGGCGTCACAGCTGTCGACC +
Preference number: 2 (lower is better)
Translates to: RNCLTMASPLGRFPSISTLCSAP*ASQLST
Trigger: GGTCGACAGCTGTGACGCTCATGGAGCAGAACACAG...GGTAGAAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGGTGAGGCAGTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR TCA 90 bp GTTCCTGCTCTTTGGAGATCAGCAGCCCTCCCCTGTACCCAAACCATGACAGACCTGTGTTCTGCTCCATaGGCGTCACAGCTGTCGACC +
Preference number: 2 (lower is better)
Translates to: VPALWRSAALPCTQTMTDLCSAP*ASQLST
Trigger: GGTCGACAGCTGTGACGCTCATGGAGCAGAACACAG...GTCTGTCATGGTTTGGGTACAGGGGAGGGCTGCTGATCTCCAAAGAGCAGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR GCA 90 bp GGAACATCTTCTCTGGGTCAGGGGCTGCGATCATGCTTCCCTTCCCGGCCCCCAATGGCATGGATGGTATaGTGGCTTTCACCTCCATGT +
Preference number: 2 (lower is better)
Translates to: GTSSLGQGLRSCFPSRPPMAWMV*WLSPPC
Trigger: ACATGGAGGTGAAAGCCAGCATACCATCCATGCCAT...TGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTGACCCAGAGAAGATGTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp TTCTGCTCCATGAGCGTCACAGCTGTCGACCAGCTCCGGGCACATTTCCTCACAGTTGGCCAAAGAACTTaGAGGCCAGGGCTTTGGCTG +
Preference number: 2 (lower is better)
Translates to: FCSMSVTAVDQLRAHFLTVGQRT*RPGLWL
Trigger: CAGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAAC...TGTGAGGAAATGTGCCCGGAGCTGGTCGACAGCTGTGACGCTCATGGAGCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp ACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTGGACATCCCGGTGGAACCAGTGTCCCATGGCATaGATGGTATGCTGGCTTTCA +
Preference number: 2 (lower is better)
Translates to: TPSNSSRSTRRLWTSRWNQCPMA*MVCWLS
Trigger: TGAAAGCCAGCATACCATCCATGCCATGGGACACTG...GTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp AGACCCAGCCTAAGGCTCCAGTGGGTCAGCCCAGCCCTCTTCCTATCTAGGTCTCCCTGCAGACCTATGTaGTGCCCCTATTGTGCTGTT +
Preference number: 2 (lower is better)
Translates to: RPSLRLQWVSPALFLSRSPCRPM*CPYCAV
Trigger: AACAGCACAATAGGGGCACCACATAGGTCTGCAGGG...AGACCTAGATAGGAAGAGGGCTGGGCTGACCCACTGGAGCCTTAGGCTGGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CAA 90 bp CGAGGCATAGCGTGGGCTTATCTGGGCAAGTTGTATGACCTCCAGTaGCTCCTGACCTCTAGGCCTCAGGTCCAACTTCATCAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: RGIAWAYLGKLYDLQ*LLTSRPQVQLHQPL
Trigger: CAAGGGCTGATGAAGTTGGACCTGAGGCCTAGAGGTCAGGAGCAACTGGAGGTCATACAACTTGCCCAGATAAGCCCACGCTATGCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR TCA 90 bp GTGGTTGGTCCGCCCCTTGTCCCGGTTGTTGGTCACAGTCTTCAGCACCTCCTCTCAAGTTGTTGTGCCTaGGAGCAGGCAAAGATGAAG +
Preference number: 2 (lower is better)
Translates to: VVGPPLVPVVGHSLQHLLSSCCA*EQAKMK
Trigger: CTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGA...GAGGAGGTGCTGAAGACTGTGACCAACAACCGGGACAAGGGGCGGACCAACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR TCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTTGCAGAGCAGCCTTATaGGAAACAGCAAGGCACCAT +
Preference number: 2 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLACRAAL*ETARHH
Trigger: ATGGTGCCTTGCTGTTTCTCATAAGGCTGCTCTGCA...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR CCA 90 bp GTTGGGGCTGATCTGGAGCAGGAACCAGGCACTGCCCCGGAGGCCACCTTCAGTTGCATCCCAGTACAATaGCACATCATCAAACAACAC +
Preference number: 2 (lower is better)
Translates to: VGADLEQEPGTAPEATFSCIPVQ*HIIKQH
Trigger: GTGTTGTTTGATGATGTGCCATTGTACTGGGATGCA...ACTGAAGGTGGCCTCCGGGGCAGTGCCTGGTTCCTGCTCCAGATCAGCCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR-3UTR TCA 90 bp GCTCTTTGGAGATCAGCAGCCCTCCCCTGTACCCAAACCATGACAGACCCAGCCTCAAGTTGTTGTGCCTaGGAGCAGGCAAAGATGAAG +
Preference number: 2 (lower is better)
Translates to: ALWRSAALPCTQTMTDPASSCCA*EQAKMK
Trigger: CTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGA...GGCTGGGTCTGTCATGGTTTGGGTACAGGGGAGGGCTGCTGATCTCCAAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR GCA 90 bp GCTCTTTGGAGATCAGCAGCCCTCCCCTGTACCCAAACCATGACAGACCCAGCCATGAAGTCTGTGTTCTaGTCCATGAGCGTCACAGCT +
Preference number: 2 (lower is better)
Translates to: ALWRSAALPCTQTMTDPAMKSVF*SMSVTA
Trigger: AGCTGTGACGCTCATGGAGCAGAACACAGACTTCAT...GGCTGGGTCTGTCATGGTTTGGGTACAGGGGAGGGCTGCTGATCTCCAAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR GCA 90 bp TGGTTGGTCCGCCCCTTGTCCCGGTTGTTGGTCACAGTCTTCAGCACCTCCTCCCCATTCAAGTTGTTGTaGCTGAGAGCAGGCAAAGAT +
Preference number: 2 (lower is better)
Translates to: WLVRPLSRLLVTVFSTSSPFKLL*LRAGKD
Trigger: ATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGG...GGAGGAGGTGCTGAAGACTGTGACCAACAACCGGGACAAGGGGCGGACCAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR GCA 90 bp CGACCAGCTCCGGGCACATTTCCTCACAGTCTCCTTGAAGGGCCAAAGCCAGGCCCATTCAAGTTGTTGTaGCTGAGAGCAGGCAAAGAT +
Preference number: 2 (lower is better)
Translates to: RPAPGTFPHSLLEGPKPGPFKLL*LRAGKD
Trigger: ATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGG...GCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAAATGTGCCCGGAGCTGGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000161338.2
3UTR-3UTR CCA 90 bp AGACCCAGCCTAAGGCTCCAGTGGGTCAGCCCAGCCCTCTTCCTATCTAGGTCTTCAGCCCTTGTTCCATaGTCAGAAACCTTAGCTGCA +
Preference number: 2 (lower is better)
Translates to: RPSLRLQWVSPALFLSRSSALVP*SETLAA
Trigger: TGCAGCTAAGGTTTCTGACCATGGAACAAGGGCTGA...AGACCTAGATAGGAAGAGGGCTGGGCTGACCCACTGGAGCCTTAGGCTGGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR TCA 90 bp TGTGACAGTGTCCCATGGCATGGATGGTATGCTGGCTTTCACCTCCATGTTGGCCAGGCTGTATCAATGTaGCAGTGTCCCATGGCATGG +
Preference number: 2 (lower is better)
Translates to: CDSVPWHGWYAGFHLHVGQAVSM*QCPMAW
Trigger: CCATGCCATGGGACACTGTCACATTGATACAGCCTG...GCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTATCTCAAAGTCCCTTaGCTTATGGTCACCCGAGGT +
Preference number: 2 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVYLKVP*LMVTRG
Trigger: ACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATA...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR CCA 90 bp TTCTGCTCCATGAGCGTCACAGCTGTCGACCAGCTCCGGGCACATTTCCTCACACGCTCAGGACATAACTaGTCTTTTCGCCTTCTTTGG +
Preference number: 2 (lower is better)
Translates to: FCSMSVTAVDQLRAHFLTRSGHN*SFRLLW
Trigger: CCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCG...TGTGAGGAAATGTGCCCGGAGCTGGTCGACAGCTGTGACGCTCATGGAGCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CAA 90 bp ACAAAGGTACTAGAACGAGGCATAGCGTGGGCTTATCTGGGCAAGTaGTATGACCTCCAGTTGCTCCTGACCTCTAGGCCTCAGGTCCAA +
Preference number: 2 (lower is better)
Translates to: TKVLERGIAWAYLGK*YDLQLLLTSRPQVQ
Trigger: TTGGACCTGAGGCCTAGAGGTCAGGAGCAACTGGAGGTCATACAACTTGCCCAGATAAGCCCACGCTATGCCTCGTTCTAGTACCTTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR GCA 90 bp TCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCCCAGTGGTAACCTTAGGTCTTaGCCCTGGAAATACTCTCCC +
Preference number: 2 (lower is better)
Translates to: SMAGCSPSLTLAHSFPPSGNLRS*PWKYSP
Trigger: GGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACC...ACTGGGAGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR CCA 90 bp TGCCATGAGAACGGATGTCTTCATAGTAGTTCATGGCATCTTCTGCCACCAGCTGGAACTGCCTCACCATaGCCTCTCCACTGGGAAGGT +
Preference number: 2 (lower is better)
Translates to: CHENGCLHSSSWHLLPPAGTASP*PLHWEG
Trigger: ACCTTCCCAGTGGAGAGGCCATGGTGAGGCAGTTCC...AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAGACATCCGTTCTCATGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR CCA 90 bp TGCCATGAGAACGGATGTCTTCATAGTAGTTCATGGCATCTTCTGCCACCAGCTAAGAGGAAGCCACTGTaGTTGGTCCGCCCCTTGTCC +
Preference number: 2 (lower is better)
Translates to: CHENGCLHSSSWHLLPPAKRKPL*LVRPLS
Trigger: GGACAAGGGGCGGACCAACCACAGTGGCTTCCTCTT...AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAGACATCCGTTCTCATGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR CCA 90 bp CAATGTGACAGTGTCCCATGGCATGGATGGTATGCTGGCTTTCACCTCCATGTTTGTTCACCATCTGGTTaGCTGTGTGCAGGGCCTGGA +
Preference number: 2 (lower is better)
Translates to: QCDSVPWHGWYAGFHLHVCSPSG*LCAGPG
Trigger: TCCAGGCCCTGCACACAGCCAACCAGATGGTGAACA...AACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR GCA 90 bp GGCATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTTGTGCCTGAGAATGAAGTCTGTGTTCTaGTCCATGAGCGTCACAGCT +
Preference number: 2 (lower is better)
Translates to: GMQTRVLALDPFKLLCLRMKSVF*SMSVTA
Trigger: AGCTGTGACGCTCATGGAGCAGAACACAGACTTCAT...TCTCAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR CCA 90 bp TGTATCAATGTGACAGTGTCCCATGGCATGGATGGTATGCTGGCTTTCACCTCCTGTGACAGTGTCCCATaGCATGGATGGTATGCTGGC +
Preference number: 2 (lower is better)
Translates to: CINVTVSHGMDGMLAFTSCDSVP*HGWYAG
Trigger: GCCAGCATACCATCCATGCCATGGGACACTGTCACA...GGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR-3UTR CCA 90 bp AAGCCAGGCTGTATCAATGTGACAGTGTCCCATGGCATGGATGGTATGCTGGCTACAGCCAGTTTAGCCTaGCTCAGCTGGAACATCTTC +
Preference number: 2 (lower is better)
Translates to: KPGCINVTVSHGMDGMLATASLA*LSWNIF
Trigger: GAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGT...AGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGCCTGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR GCA 90 bp AAGTTCCAGCTCAGTTTCTGGGTCAGGAAGCGCTTGATGCCACAGCCTTGCATGCCATTCAAGTTGTTGTaGCTGAGAGCAGGCAAAGAT +
Preference number: 2 (lower is better)
Translates to: KFQLSFWVRKRLMPQPCMPFKLL*LRAGKD
Trigger: ATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGG...CATGCAAGGCTGTGGCATCAAGCGCTTCCTGACCCAGAAACTGAGCTGGAACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR TCA 90 bp CTTGACCCATTCAAGTTGTTGTGCCTGAGAGCAGGCAAAGATGAAGTCTGTGTTGGGTGGGGGACAGAGTaGGGAGATAAAAAGGTTCCT +
Preference number: 2 (lower is better)
Translates to: LDPFKLLCLRAGKDEVCVGWGTE*GDKKVP
Trigger: AGGAACCTTTTTATCTCCTCACTCTGTCCCCCACCC...AACACAGACTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGGGTCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR CCA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGCTTAGGTCTTGCCCCTaGAAATACTCTCCCTCCTTA +
Preference number: 2 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRLRSCP*KYSPSL
Trigger: TAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAG...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR TCA 90 bp TTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGCTAGGGAGGTGGAAATaGGGAACTCCCAAAGCTATC +
Preference number: 2 (lower is better)
Translates to: FLSQSPLAYGHPRSPVSELGRWK*GTPKAI
Trigger: GATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAG...CTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR GCA 90 bp GAAAAAGGTATGGTGTGGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGTATGAAGTCTGTGTTCTaGTCCATGAGCGTCACAGCT +
Preference number: 2 (lower is better)
Translates to: EKGMVWKGVDQVPAQFLGMKSVF*SMSVTA
Trigger: AGCTGTGACGCTCATGGAGCAGAACACAGACTTCAT...ACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR GCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGAATCTAAGCTTTTATTaGACAAGATGCTTCGGGCTA +
Preference number: 2 (lower is better)
Translates to: LEILSLLTARAEQPYEKQNLSFY*TRCFGL
Trigger: TAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGATT...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR GCA 90 bp CAGAAAAAGGTATGGTGTGGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGATCTTCCCAAACTCTTaGAGAAAGAAGTTCTGGCCC +
Preference number: 2 (lower is better)
Translates to: QKKVWCGKELTKFQLSFWIFPNS*RKKFWP
Trigger: GGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGAT...CCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR-3UTR GCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGATCCATGACATCCCATaGATCCCAGTACAATGGCAC +
Preference number: 2 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLIHDIP*IPVQWH
Trigger: GTGCCATTGTACTGGGATGCATGGGATGTCATGGAT...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
3UTR-3UTR TCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACTAGATGGTAATCCATaGCATCCCATGCATCCCAGT +
Preference number: 2 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQLDGNP*HPMHPS
Trigger: ACTGGGATGCATGGGATGTCATGGATTACCATCTAG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
3UTR-3UTR CCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAATGCATCCCAGTACAATaGCACATCATCAAACAACAC +
Preference number: 2 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQCIPVQ*HIIKQH
Trigger: GTGTTGTTTGATGATGTGCCATTGTACTGGGATGCA...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
3UTR CCA 72 bp CCTGGAAGCTGCGCTGGCTGTCCTCCCCGAGGCCCTTaGCCACACCCAGCAACAGCTCCAGGTCCACCAGGA +
Preference number: 3 (lower is better)
Translates to: PGSCAGCPPRGP*PHPATAPGPPG
Trigger: TCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGGCCTCGGGGAGGACAGCCAGCGCAGCTTCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CAA 90 bp GCCCTTGGGACCTGGCTCCCCGGCACACAAGGCTGCGGCTGCAGCACTGAGCAGCGCCCCTTGTCCCGGTaGTTGGTCACAGTCTTCAGC +
Preference number: 3 (lower is better)
Translates to: ALGTWLPGTQGCGCSTEQRPLSR*LVTVFS
Trigger: GCTGAAGACTGTGACCAACAACCGGGACAAGGGGCG...CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CCA 72 bp CAGAGGTGCTGCAGCTGGGCTGCCGGGTATAGGAACTaGGCACTTCGGGCTAGGGCCAGGCTGCTGAGCACC +
Preference number: 3 (lower is better)
Translates to: QRCCSWAAGYRN*ALRARARLLST
Trigger: GGTGCTCAGCAGCCTGGCCCTAGCCCGAAGTGCCCAGTTCCTATACCCGGCAGCCCAGCTGCAGCACCTCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR GCA 72 bp CTTGGGACCTGGCTCCCCGGCACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTTGCCATGAGAACGGAT +
Preference number: 3 (lower is better)
Translates to: LGTWLPGTQGCG*STEQWVAMRTD
Trigger: ATCCGTTCTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CCA 72 bp GGGCAGTGTGTTGATAATGAGGAGGCCCTTGGGACCTaGCTCCCCGGCACACAAGGCTGCGGCTGCAGCACT +
Preference number: 3 (lower is better)
Translates to: GQCVDNEEALGT*LPGTQGCGCST
Trigger: AGTGCTGCAGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTCCTCATTATCAACACACTGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR-3UTR CAA 90 bp GCCACCTCCCCCATCCCCGAAGCCGAAGAGGAAGCCACTGTGGTTGGTCCGCCCGCTTTCACCTCCATGTaGGCCAAAGAACTTGGAGGC +
Preference number: 3 (lower is better)
Translates to: ATSPIPEAEEEATVVGPPAFTSM*AKELGG
Trigger: GCCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGC...GGGCGGACCAACCACAGTGGCTTCCTCTTCGGCTTCGGGGATGGGGGAGGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR GCA 72 bp GCTGGAACATCTTCTCTGGGTCAGGGGCTGCGATCATaGTTCCCTTCCCGGCCCCCAGAAGCCCATTGCAGG +
Preference number: 3 (lower is better)
Translates to: AGTSSLGQGLRS*FPSRPPEAHCR
Trigger: CCTGCAATGGGCTTCTGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR GCA 72 bp GGAGGAGCGGGTTGGGCAGGAAGGACTGAGACCAACTaGCAGGACACAGGTACCAGGTCCTGGACGAGCCTT +
Preference number: 3 (lower is better)
Translates to: GGAGWAGRTETN*QDTGTRSWTSL
Trigger: AAGGCTCGTCCAGGACCTGGTACCTGTGTCCTGGCAGTTGGTCTCAGTCCTTCCTGCCCAACCCGCTCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 72 bp CCCACAGGCACAAACTGTCCTCGGCAGGCAAACTCCTaGAGCCGGGCATGCAGACCAGGGTACTGGCTCTTG +
Preference number: 3 (lower is better)
Translates to: PTGTNCPRQANS*SRACRPGYWLL
Trigger: CAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTGCCGAGGACAGTTTGTGCCTGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR CCA 72 bp CTGCCCTGCATTCCATATGAGTCTCCAGGTGGGAAGTaGACCAGCACTCGGGAGCCATCCAGCCCCTCCCAG +
Preference number: 3 (lower is better)
Translates to: LPCIPYESPGGK*TSTREPSSPSQ
Trigger: CTGGGAGGGGCTGGATGGCTCCCGAGTGCTGGTCCACTTCCCACCTGGAGACTCATATGGAATGCAGGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CCA 72 bp TGCTCAGCCGCTTCAATCGGTCCAACATGGTCTGTGTaGGGCCACCTCCCCCATCCCCGAAGCCGAAGAGGA +
Preference number: 3 (lower is better)
Translates to: CSAASIGPTWSV*GHLPHPRSRRG
Trigger: TCCTCTTCGGCTTCGGGGATGGGGGAGGTGGCCCCACACAGACCATGTTGGACCGATTGAAGCGGCTGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR TCA 72 bp CTGCAAGATAGGAGGAGCGGGTTGGGCAGGAAGGACTaGGACCAACTGCCAGGACACAGGTACCAGGTCCTG +
Preference number: 3 (lower is better)
Translates to: LQDRRSGLGRKD*DQLPGHRYQVL
Trigger: CAGGACCTGGTACCTGTGTCCTGGCAGTTGGTCTCAGTCCTTCCTGCCCAACCCGCTCCTCCTATCTTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR TCA 72 bp TTTGGAGATCAGCAGCCCTCCCCTGTACCCAAACCATaGCAGACCCAGCCTAAGGCTCCAGTGGGTCAGCCC +
Preference number: 3 (lower is better)
Translates to: FGDQQPSPVPKP*QTQPKAPVGQP
Trigger: GGGCTGACCCACTGGAGCCTTAGGCTGGGTCTGTCATGGTTTGGGTACAGGGGAGGGCTGCTGATCTCCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR GCA 72 bp CTCCACTGGGAAGGTTCCCATCCATTTCTACCCAGGTaGCCCCCACAGGCACAAACTGTCCTCGGCAGGCAA +
Preference number: 3 (lower is better)
Translates to: LHWEGSHPFLPR*PPQAQTVLGRQ
Trigger: TTGCCTGCCGAGGACAGTTTGTGCCTGTGGGGGGCACCTGGGTAGAAATGGATGGGAACCTTCCCAGTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR CCA 72 bp AGCCAGTTTAGCCTGGCTCAGCTGGAACATCTTCTCTaGGTCAGGGGCTGCGATCATGCTTCCCTTCCCGGC +
Preference number: 3 (lower is better)
Translates to: SQFSLAQLEHLL*VRGCDHASLPG
Trigger: GCCGGGAAGGGAAGCATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 72 bp AGCTCCAGGTCCACCAGGAGACTGTGGACATCCCGGTaGAACACAGCCAGTTTAGCCTGGCTCAGCTGGAAC +
Preference number: 3 (lower is better)
Translates to: SSRSTRRLWTSR*NTASLAWLSWN
Trigger: GTTCCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 72 bp ACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTaGACATCCCGGTGGAACACAGCCAGTTTAGCCTGG +
Preference number: 3 (lower is better)
Translates to: TPSNSSRSTRRL*TSRWNTASLAW
Trigger: CCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CAA 90 bp CGACCAGCTCCGGGCACATTTCCTCACAGTCTCCTTGAAGGGCCAAAGCCAGGCTGTTGGCCAAAGAACTaGGAGGCCAGGGCTTTGGCT +
Preference number: 3 (lower is better)
Translates to: RPAPGTFPHSLLEGPKPGCWPKN*EARALA
Trigger: AGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAACA...GCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAAATGTGCCCGGAGCTGGTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR-3UTR CAA 90 bp ACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTGGACATCCCGGTGGAACGCTTTCACCTCCATGTaGGCCAAAGAACTTGGAGGC +
Preference number: 3 (lower is better)
Translates to: TPSNSSRSTRRLWTSRWNAFTSM*AKELGG
Trigger: GCCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGC...GTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CAA 90 bp AGCAATGGCTTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGCCAGTACCCGGATGATGCCGTaGTCCAAAGTCACAGAACCG +
Preference number: 3 (lower is better)
Translates to: SNGFPARSHQDQGGKTASTRMMP*SKVTEP
Trigger: CGGTTCTGTGACTTTGGACAACGGCATCATCCGGGT...ACTGGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR GCA 72 bp AACTGTCCTCGGCAGGCAAACTCCTGGAGCCGGGCATaGAGACCAGGGTACTGGCTCTTGACCCATTCAAGT +
Preference number: 3 (lower is better)
Translates to: NCPRQANSWSRA*RPGYWLLTHSS
Trigger: ACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTGCCGAGGACAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR CCA 72 bp CGTATTCTAGCAGGGAACTCCACCTTCAGGAACTTGTaGGCCTCGTGCCAGTGCACCTCAGTGTGGAAGCGG +
Preference number: 3 (lower is better)
Translates to: RILAGNSTFRNL*ASCQCTSVWKR
Trigger: CCGCTTCCACACTGAGGTGCACTGGCACGAGGCCCACAAGTTCCTGAAGGTGGAGTTCCCTGCTAGAATACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR CCA 72 bp GACCCTGCACACACCGGTAACCTTAGGTCTTGCCCCTaGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGC +
Preference number: 3 (lower is better)
Translates to: DPAHTGNLRSCP*KYSPSLQPVQS
Trigger: GCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTGTGCAGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR CCA 72 bp AGCTCTTCCCATCCAGGAGGCATCAGGGCCTATGGTTaGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAG +
Preference number: 3 (lower is better)
Translates to: SSSHPGGIRAYG*LFSQLSSRRHQ
Trigger: CTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGATGGGAAGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR CCA 72 bp TCCCGGTGGAACACAGCCAGTTTAGCCTGGCTCAGCTaGAACATCTTCTCTGGGTCAGGGGCTGCGATCATG +
Preference number: 3 (lower is better)
Translates to: SRWNTASLAWLS*NIFSGSGAAIM
Trigger: CATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR CCA 72 bp AGAAGCCACCAGGACCAGGGAGGTAAGACAGCCAGTTaGATCCAGTCTCACCCGGATGATGCCGTTGTCCAA +
Preference number: 3 (lower is better)
Translates to: RSHQDQGGKTAS*IQSHPDDAVVQ
Trigger: TTGGACAACGGCATCATCCGGGTGAGACTGGATCCAACTGGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR CCA 72 bp ACTTCATGTCCCTCCTGCAAGATAGGAGGAGCGGGTTaGGCAGGAAGGACTGAGACCAACTGCCAGGACACA +
Preference number: 3 (lower is better)
Translates to: TSCPSCKIGGAG*AGRTETNCQDT
Trigger: TGTGTCCTGGCAGTTGGTCTCAGTCCTTCCTGCCCAACCCGCTCCTCCTATCTTGCAGGAGGGACATGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR-3UTR CAA 90 bp CATGGCATCTTCTGCCACCAGCTGAATGCAGCTTCCAGTCACCACATCATGGAAGGCAGCCCATCAGTGTaGCTCAGCCGCTTCAATCGG +
Preference number: 3 (lower is better)
Translates to: HGIFCHQLNAASSHHIMEGSPSV*LSRFNR
Trigger: CCGATTGAAGCGGCTGAGCAACACTGATGGGCTGCC...TTCCATGATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAGAAGATGCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR TCA 72 bp GGCTACTTCCACATAGAGAGTCAAGCTCCGAGGGTCTaGTGCTCGCAGCCTCTCGCTCAGGACATAACTGGT +
Preference number: 3 (lower is better)
Translates to: GYFHIESQAPRV*CSQPLAQDITG
Trigger: ACCAGTTATGTCCTGAGCGAGAGGCTGCGAGCATCAGACCCTCGGAGCTTGACTCTCTATGTGGAAGTAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR GCA 72 bp TGGTGCCCCTATTGTGCTGTTACTTCATGTCCCTCCTaGAAGATAGGAGGAGCGGGTTGGGCAGGAAGGACT +
Preference number: 3 (lower is better)
Translates to: WCPYCAVTSCPS*KIGGAGWAGRT
Trigger: AGTCCTTCCTGCCCAACCCGCTCCTCCTATCTTGCAGGAGGGACATGAAGTAACAGCACAATAGGGGCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR GCA 72 bp GGGTCAGCCCAGCCCTCTTCCTATCTAGGTCTACCCTaGAGACCTATGTGGTGCCCCTATTGTGCTGTTACT +
Preference number: 3 (lower is better)
Translates to: GSAQPSSYLGLP*RPMWCPYCAVT
Trigger: AGTAACAGCACAATAGGGGCACCACATAGGTCTGCAGGGTAGACCTAGATAGGAAGAGGGCTGGGCTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 72 bp CCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTaGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTT +
Preference number: 3 (lower is better)
Translates to: PSLAPGGIRVYG*LFSQFNTCPQL
Trigger: AAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR-3UTR CAA 90 bp AAGCCAGGCTGTATCAATGTGACAGTGTCCCATGGCATGGATGGTATGCTGGCTATGTTCACCATCTGGTaGGCTGTGTGCAGGGCCTGG +
Preference number: 3 (lower is better)
Translates to: KPGCINVTVSHGMDGMLAMFTIW*AVCRAW
Trigger: CCAGGCCCTGCACACAGCCAACCAGATGGTGAACAT...AGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGCCTGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162915.8
3UTR-3UTR CAA 90 bp GTCGACCAGCTCCGGGCACATTTCCTCACAGTCTCCTTGAAGGGCCAAAGCCAGCAACTTCATCAGCCCTaGTTCCATGGTCAGAAACCT +
Preference number: 3 (lower is better)
Translates to: VDQLRAHFLTVSLKGQSQQLHQP*FHGQKP
Trigger: AGGTTTCTGACCATGGAACAAGGGCTGATGAAGTTG...CTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAAATGTGCCCGGAGCTGGTCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR TCA 72 bp TCGACCAGCTCCGGGCACATTTCCTCACAGTCTCCTTaGAGGGCCAAAGCCAGGCTGTATCAATGTGACAGT +
Preference number: 3 (lower is better)
Translates to: STSSGHISSQSP*RAKARLYQCDS
Trigger: ACTGTCACATTGATACAGCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAAATGTGCCCGGAGCTGGTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR TCA 72 bp GCCCCTCCCAGAAAAAGGTATGGTGTGGAAAGGAGTTaGCCAAGTTCCAGCTCAGTTTCTGGGTCAGGAAGC +
Preference number: 3 (lower is better)
Translates to: APPRKRYGVERS*PSSSSVSGSGS
Trigger: GCTTCCTGACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTGGGAGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR TCA 72 bp GGCTCCAGGCCTCCTGTCCAGCCATCATCTCCCTGCTaGCTTTTTATCTCAAAGTCCCTTGGCTTATGGTCA +
Preference number: 3 (lower is better)
Translates to: GSRPPVQPSSPC*LFISKSLGLWS
Trigger: TGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATGATGGCTGGACAGGAGGCCTGGAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR GCA 72 bp AGGTCTACCCTGCAGACCTATGTGGTGCCCCTATTGTaGTGTTACTTCATGTCCCTCCTGCAAGATAGGAGG +
Preference number: 3 (lower is better)
Translates to: RSTLQTYVVPLL*CYFMSLLQDRR
Trigger: CCTCCTATCTTGCAGGAGGGACATGAAGTAACAGCACAATAGGGGCACCACATAGGTCTGCAGGGTAGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 72 bp GGAGCCATCCAGCCCCTCCCAGAAAAAGGTATGGTGTaGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTG +
Preference number: 3 (lower is better)
Translates to: GAIQPLPEKGMV*KGVDQVPAQFL
Trigger: CAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTGGGAGGGGCTGGATGGCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
3UTR CCA 72 bp TCTCGCTCAGGACATAACTGGTCTTTTCGCCTTCTTTaGTCAAACCCTGGACAGGTTCCCCATCACGCCAGA +
Preference number: 3 (lower is better)
Translates to: SRSGHNWSFRLL*SNPGQVPHHAR
Trigger: TCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
3UTR CCA 72 bp CCCTCTTCCTATCTAGGTCTACCCTGCAGACCTATGTaGTGCCCCTATTGTGCTGTTACTTCATGTCCCTCC +
Preference number: 3 (lower is better)
Translates to: PSSYLGLPCRPM*CPYCAVTSCPS
Trigger: GGAGGGACATGAAGTAACAGCACAATAGGGGCACCACATAGGTCTGCAGGGTAGACCTAGATAGGAAGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CCA 72 bp GCCAAAGCCAGGCTGTATCAATGTGACAGTGTCCCATaGCATGGATGGTATGCTGGCTTTCACCTCCATGTT +
Preference number: 3 (lower is better)
Translates to: AKARLYQCDSVP*HGWYAGFHLHV
Trigger: AACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGCCTGGCTTTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR TCA 72 bp CCAGCACAGGCTTCCGTGTCTCTAGATGGTAATCCATaGCATCCCATGCATCCCAGTACAATGGCACATCAT +
Preference number: 3 (lower is better)
Translates to: PAQASVSLDGNP*HPMHPSTMAHH
Trigger: ATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCATCTAGAGACACGGAAGCCTGTGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
3UTR CCA 72 bp AGGCTGTATCAATGTGACAGTGTCCCATGGCATGGATaGTATGCTGGCTTTCACCTCCATGTTGGCCAAAGA +
Preference number: 3 (lower is better)
Translates to: RLYQCDSVPWHG*YAGFHLHVGQR
Trigger: TCTTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
3UTR GCA 72 bp AGAACGGATGTCTTCATAGTAGTTCATGGCATCTTCTaGCACCAGCTGAATGCAGCTTCCAGTCACCACATC +
Preference number: 3 (lower is better)
Translates to: RTDVFIVVHGIF*HQLNAASSHHI
Trigger: GATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAGAAGATGCCATGAACTACTATGAAGACATCCGTTCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR GCA 90 bp CCGGCTGTTGGGGCTGATCTGGAGCAGGAACCAGGCACTGCCCCGGAGGCCACCACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: PAVGADLEQEPGTAPEATTQGCG*STEQWV
Trigger: AACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGT...GGTGGCCTCCGGGGCAGTGCCTGGTTCCTGCTCCAGATCAGCCCCAACAGCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR CCA 90 bp CCAACATCTAGCACAACCTCCTGGCTGAGCCGGCTGTTGGGGCTGATCTGGAGCGAGGCCCTTGGGACCTaGCTCCCCGGCACACAAGGC +
Preference number: 4 (lower is better)
Translates to: PTSSTTSWLSRLLGLIWSEALGT*LPGTQG
Trigger: GCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTC...GCTCCAGATCAGCCCCAACAGCCGGCTCAGCCAGGAGGTTGTGCTAGATGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR CAA 72 bp CGCTTCCAGGGCAGTGTGTTGATAATGAGGAGGCCCTaGGGACCTGGCTCCCCGGCACACAAGGCTGCGGCT +
Preference number: 4 (lower is better)
Translates to: RFQGSVLIMRRP*GPGSPAHKAAA
Trigger: AGCCGCAGCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTCCTCATTATCAACACACTGCCCTGGAAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR CCA 90 bp CAGGTGGGAAGTGGACCAGCACTCGGGAGCCATCCAGCCCCTCCCAGAAAAAGGCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: QVGSGPALGSHPAPPRKRRASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...CCTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTGGTCCACTTCCCACCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR CCA 90 bp CCGGCTGTTGGGGCTGATCTGGAGCAGGAACCAGGCACTGCCCCGGAGGCCACCACCACATCATGGAACTaGTTGAGGAGCAGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: PAVGADLEQEPGTAPEATTTSWN*LRSRSL
Trigger: CAGGCTCCTGCTCCTCAACCAGTTCCATGATGTGGT...GGTGGCCTCCGGGGCAGTGCCTGGTTCCTGCTCCAGATCAGCCCCAACAGCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp CTCAGCAATGGCTTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGCCCTGCGGCTGCAGCACTaGGCAGTGGGTTGCCATGAG +
Preference number: 4 (lower is better)
Translates to: LSNGFPARSHQDQGGKTALRLQH*AVGCHE
Trigger: CTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAG...GGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp TCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCACCAGTGTGCGGTGCTaGTGGCACCTCTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: SGPMVGCSPSLAPGGIRVTSVRC*WHLSAC
Trigger: GCAGGCTGAGAGGTGCCATCAGCACCGCACACTGGT...GACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CAGGTGGGAAGTGGACCAGCACTCGGGAGCCATCCAGCCCCTCCCAGAAAAAGGAAAGTGGTGCGCCAGTaGTTCAAGAACGGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: QVGSGPALGSHPAPPRKRKVVRQ*FKNGAA
Trigger: GGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTT...CCTTTTTCTGGGAGGGGCTGGATGGCTCCCGAGTGCTGGTCCACTTCCCACCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR GCA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTCAGGGGCTGCGATCATaGTTCCCTTCCCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVQGLRS*FPSRPP
Trigger: TGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTG...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCGCCTGGAGCCGGCAGTaGCAGCAGGGGAAAGTTGAG +
Preference number: 4 (lower is better)
Translates to: SGPMVGCSPSLAPGGIRVAWSRQ*QQGKVE
Trigger: CTCAACTTTCCCCTGCTGGCACTGCCGGCTCCAGGC...GACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLARASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCCTGGAAGCTGCGCTaGCTGTCCTCCCCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: VTLGLAPGNTLPPYSPCRAWKLR*LSSPRP
Trigger: GGGCCTCGGGGAGGACAGCCAGCGCAGCTTCCAGGC...TCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGGAAGCCACTGTGGTTaGTCCGCCCCTTGTCCCGGT +
Preference number: 4 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLAGSHCG*SAPCPG
Trigger: ACCGGGACAAGGGGCGGACCAACCACAGTGGCTTCC...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTAAAAGGCACTCCAGGTaGTGTCAGGGGCCGGGCCTG +
Preference number: 4 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLAKRHSR*CQGPGL
Trigger: CAGGCCCGGCCCCTGACACCACCTGGAGTGCCTTTT...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
3UTR CAA 72 bp AAGCCACTGTGGTTGGTCCGCCCCTTGTCCCGGTTGTaGGTCACAGTCTTCAGCACCTCCTCCACACTGCCC +
Preference number: 4 (lower is better)
Translates to: KPLWLVRPLSRL*VTVFSTSSTLP
Trigger: GGGCAGTGTGGAGGAGGTGCTGAAGACTGTGACCAACAACCGGGACAAGGGGCGGACCAACCACAGTGGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR GCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAAGCAGGGCCTGGAAGCTaGGCTGGCTGTCCTCCCCGA +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKAGPGS*AGCPPR
Trigger: TCGGGGAGGACAGCCAGCGCAGCTTCCAGGCCCTGC...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTGTGTTCTGCTCCATGAGCGTCACAGCTGTCGACCAGCTCCGGGCACATTTCCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SVFCSMSVTAVDQLRAHFRASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...GAAATGTGCCCGGAGCTGGTCGACAGCTGTGACGCTCATGGAGCAGAACACAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
ENSMUST00000162915.8
CDS-3UTR CCA 90 bp TCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCAGCAGGTCCACCATGTaGGTCCGAAGCTGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: SGPMVGCSPSLAPGGIRVSRSTM*VRSCRR
Trigger: TCGGCGACAGCTTCGGACCCACATGGTGGACCTGCT...GACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCCCTCCCCGAGGCCCTTaGCCACACCCAGCAACAGCT +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPPPRGP*PHPATA
Trigger: AGCTGTTGCTGGGTGTGGCCAAGGGCCTCGGGGAGG...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATAGCTCTTCCCATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCGCCGGGTATAGGAACTaGGCACTTCGGGCTAGGGCC +
Preference number: 4 (lower is better)
Translates to: IALPIQEASGPMVGCSPSAGYRN*ALRARA
Trigger: GGCCCTAGCCCGAAGTGCCCAGTTCCTATACCCGGC...GCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGATGGGAAGAGCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTCAGAGGTGCTGCAGCTaGGCTGCCGGGTATAGGAAC +
Preference number: 4 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLAQRCCS*AAGYRN
Trigger: GTTCCTATACCCGGCAGCCCAGCTGCAGCACCTCTG...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp CTCCAGTATCTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTGAGGCCCTTGGGACCTaGCTCCCCGGCACACAAGGC +
Preference number: 4 (lower is better)
Translates to: LQYLRWKPDPAHTGNLRSEALGT*LPGTQG
Trigger: GCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTC...AGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp CTCAGCAATGGCTTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGCCGAGCCCCACAAGGCTTaGGCAGTGCCAACACTTCAG +
Preference number: 4 (lower is better)
Translates to: LSNGFPARSHQDQGGKTAEPHKA*AVPTLQ
Trigger: CTGAAGTGTTGGCACTGCCCAAGCCTTGTGGGGCTC...GGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
3UTR CAA 72 bp AGGAAGCCACTGTGGTTGGTCCGCCCCTTGTCCCGGTaGTTGGTCACAGTCTTCAGCACCTCCTCCACACTG +
Preference number: 4 (lower is better)
Translates to: RKPLWLVRPLSR*LVTVFSTSSTL
Trigger: CAGTGTGGAGGAGGTGCTGAAGACTGTGACCAACAACCGGGACAAGGGGCGGACCAACCACAGTGGCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
3UTR CAA 72 bp AAGCCGAAGAGGAAGCCACTGTGGTTGGTCCGCCCCTaGTCCCGGTTGTTGGTCACAGTCTTCAGCACCTCC +
Preference number: 4 (lower is better)
Translates to: KPKRKPLWLVRP*SRLLVTVFSTS
Trigger: GGAGGTGCTGAAGACTGTGACCAACAACCGGGACAAGGGGCGGACCAACCACAGTGGCTTCCTCTTCGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR TCA 90 bp CCCTCAGCAATGGCTTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGTCTTCTGCCACCAGCTaGATGCAGCTTCCAGTCACC +
Preference number: 4 (lower is better)
Translates to: PSAMASLPEATRTREVRQSSATS*MQLPVT
Trigger: GGTGACTGGAAGCTGCATTCAGCTGGTGGCAGAAGA...CTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCTCCTGGAGGGAAAGGTaGCCAGTGGGGTCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPSWRER*PVGSRC
Trigger: GCAGCGAGACCCCACTGGTCACCTTTCCCTCCAGGA...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp GGGGGAGCTGTGCTGAGTAGCCAAACGTGTCTGGCAGCCAGAACTCAGAGCACAAAAGTGGTGCGCCAGTaGTTCAAGAACGGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: GGAVLSSQTCLAARTQSTKVVRQ*FKNGAA
Trigger: GGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTT...TGTGCTCTGAGTTCTGGCTGCCAGACACGTTTGGCTACTCAGCACAGCTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR GCA 90 bp GCCTCACCATGGCCTCTCCACTGGGAAGGTTCCCATCCATTTCTACCCAGGTGCCCCGCTCGAAAGTGGTaGGCCAGTGCTTCAAGAACG +
Preference number: 4 (lower is better)
Translates to: ASPWPLHWEGSHPFLPRCPARKW*ASASRT
Trigger: CGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGG...GCACCTGGGTAGAAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGGTGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR GCA 90 bp TCTGTGTTCTGCTCCATGAGCGTCACAGCTGTCGACCAGCTCCGGGCACATTTCAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGC +
Preference number: 4 (lower is better)
Translates to: SVFCSMSVTAVDQLRAHFKLSPT*AGLKFC
Trigger: GCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTT...GAAATGTGCCCGGAGCTGGTCGACAGCTGTGACGCTCATGGAGCAGAACACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCAGGGCCTGGAAGCTaGGCTGGCTGTCCTCCCCGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAGPGS*AGCPPR
Trigger: TCGGGGAGGACAGCCAGCGCAGCTTCCAGGCCCTGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp AAACTGGATCTCATAGGTAGCCTGGGGGCTCCGTATTCTAGCAGGGAACTCCACCCCGGCACACAAGGCTaGGGCTGCAGCACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: KLDLIGSLGAPYSSRELHPGTQG*GCSTEQ
Trigger: CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGG...GTGGAGTTCCCTGCTAGAATACGGAGCCCCCAGGCTACCTATGAGATCCAGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp GGCTTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGCCAGTTGGATCGTGCCAACACTTCAGTaGGCTTCCAGGGCAGTGTGT +
Preference number: 4 (lower is better)
Translates to: GFPARSHQDQGGKTASWIVPTLQ*ASRAVC
Trigger: ACACACTGCCCTGGAAGCGCACTGAAGTGTTGGCAC...GATCCAACTGGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTGGAGGCCACCTTCAGTaGCCACTGCCAGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPGGHLQ*PLPGSL
Trigger: CAGGGACCCTGGCAGTGGGCACTGAAGGTGGCCTCC...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAAGCAGGAACCAGGCACTaGCCCGGAGGCCACCTTCAG +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKAGTRH*PGGHLQ
Trigger: CTGAAGGTGGCCTCCGGGGCAGTGCCTGGTTCCTGC...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGAGGCCCTTGGGACCTaGCTCCCCGGCACACAAGGC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKEALGT*LPGTQG
Trigger: GCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTCTAGCACAACCTCCTaGCTGAGCCGGCTGTTGGGG +
Preference number: 4 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVSSTTS*LSRLLG
Trigger: CCCCAACAGCCGGCTCAGCCAGGAGGTTGTGCTAGA...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp CGCCTTCTTTGGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGCTTTGGTCCACCATCCACGTaGGTCCGAAGCTGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: RLLWSNPGQVPHHARQGFGPPST*VRSCRR
Trigger: TCGGCGACAGCTTCGGACCCACGTGGATGGTGGACC...AAAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAAGAAGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161393.8
CDS-3UTR TCA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTCTGTGTTCTGCTCCATaGGCGTCACAGCTGTCGACC +
Preference number: 4 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVLCSAP*ASQLST
Trigger: GGTCGACAGCTGTGACGCTCATGGAGCAGAACACAG...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp GTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGACTGCGGCTGCAGCACTaGGCAGTGGGTTGCCATGAG +
Preference number: 4 (lower is better)
Translates to: VTLGLAPGNTLPPYSPCRLRLQH*AVGCHE
Trigger: CTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAG...TCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TCCTGGAGCCGGGCATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTCCCGCTCGAAAGTGGTaGGCCAGTGCTTCAAGAACG +
Preference number: 4 (lower is better)
Translates to: SWSRACRPGYWLLTHSSCPARKW*ASASRT
Trigger: CGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGG...ACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCAGGGGCTGCGATCATaGTTCCCTTCCCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKQGLRS*FPSRPP
Trigger: TGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCCGGCACACAAGGCTaGGGCTGCAGCACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPGTQG*GCSTEQ
Trigger: CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATAGCTCTTCCCATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCCAGCAATGGCTTCCCTaGCAGAAGCCACCAGGACCA +
Preference number: 4 (lower is better)
Translates to: IALPIQEASGPMVGCSPSQQWLP*QKPPGP
Trigger: TGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTG...GCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGATGGGAAGAGCTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGCTTTCTCCATCGCTCCACCCGCTCGAAAGTaGTGCGCCAGTGCTTCAAGA +
Preference number: 4 (lower is better)
Translates to: GQTLDRFPITPDKAFSIAPPARK*CASASR
Trigger: TCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGG...AGCGATGGAGAAAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
CDS-3UTR CCA 90 bp CTGATGCTCGCAGCCTCTCGCTCAGGACATAACTGGTCTTTTCGCCTTCTTTGGCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: LMLAASRSGHNWSFRLLWRASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...CCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCGAGAGGCTGCGAGCATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
CDS-3UTR CCA 90 bp TCTGGGGGAGCTGTGCTGAGTAGCCAAACGTGTCTGGCAGCCAGAACTCAGAGCTCCACCAGGAGACTGTaGACATCCCGGTGGAACACA +
Preference number: 4 (lower is better)
Translates to: SGGAVLSSQTCLAARTQSSTRRL*TSRWNT
Trigger: TGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGA...GCTCTGAGTTCTGGCTGCCAGACACGTTTGGCTACTCAGCACAGCTCCCCCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp ATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGAACTGCCTCACCATaGCCTCTCCACTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: IQEASGPMVGCSPSLAPGGTASP*PLHWEG
Trigger: ACCTTCCCAGTGGAGAGGCCATGGTGAGGCAGTTCC...TCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTCAGGCTGTATCAATGTaGCAGTGTCCCATGGCATGG +
Preference number: 4 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLAQAVSM*QCPMAW
Trigger: CCATGCCATGGGACACTGTCACATTGATACAGCCTG...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTGCGGCTGCAGCACTaGGCAGTGGGTTGCCATGAG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLRLQH*AVGCHE
Trigger: CTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGGGTGCACGCAACAGTaGGAGGCTGAGGACGTTGCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKGCTQQ*EAEDVA
Trigger: GGCAACGTCCTCAGCCTCTCACTGTTGCGTGCACCC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAACCTCTCAGCCTGCTTaGTGGTCTCCAGCACTACTG +
Preference number: 4 (lower is better)
Translates to: IQEASGPMVGCSPSLAPGTSQPA*WSPALL
Trigger: CAGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGT...TCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCCTGGAGGGAAAGGTaGCCAGTGGGGTCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSWRER*PVGSRC
Trigger: GCAGCGAGACCCCACTGGTCACCTTTCCCTCCAGGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCGCCTTCTTTGGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGCTTCCCGCTCGAAAGTGGTaGGCCAGTGCTTCAAGAACG +
Preference number: 4 (lower is better)
Translates to: SPSLVKPWTGSPSRQTRLPARKW*ASASRT
Trigger: CGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGG...AAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAAGAAGGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
CDS-3UTR GCA 90 bp CTTCTTTGGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGCTTTCTCAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGC +
Preference number: 4 (lower is better)
Translates to: LLWSNPGQVPHHARQGFLKLSPT*AGLKFC
Trigger: GCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTT...GAGAAAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161393.8
CDS-3UTR GCA 90 bp CTGGCTCTTGACCCATTCAAGTTGTTGTGCCTGAGAGCAGGCAAAGATGAAGTCCAGGGGCTGCGATCATaGTTCCCTTCCCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: LALDPFKLLCLRAGKDEVQGLRS*FPSRPP
Trigger: TGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTG...GACTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGGGTCAAGAGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR GCA 90 bp ATAGCTCTTCCCATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCCCATTTCTACCCAGGTaGCCCCCACAGGCACAAACT +
Preference number: 4 (lower is better)
Translates to: IALPIQEASGPMVGCSPSPFLPR*PPQAQT
Trigger: AGTTTGTGCCTGTGGGGGGCACCTGGGTAGAAATGG...GCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGATGGGAAGAGCTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCCCAGGAGAAGATAGCTaGACCCTGGGCAGCCCATCA +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPPGEDS*TLGSPS
Trigger: TGATGGGCTGCCCAGGGTGCAGCTATCTTCTCCTGG...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAGCCTCCAGAGGTGCTaGAGCTGGGCTGCCGGGTAT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSLQRC*SWAAGY
Trigger: ATACCCGGCAGCCCAGCTGCAGCACCTCTGGAGGCT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGCCCGGCACACAAGGCTaGGGCTGCAGCACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRPGTQG*GCSTEQ
Trigger: CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGG...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGTGCCAACACTTCAGTaGGCTTCCAGGGCAGTGTGT +
Preference number: 4 (lower is better)
Translates to: IQEASGPMVGCSPSLAPGVPTLQ*ASRAVC
Trigger: ACACACTGCCCTGGAAGCGCACTGAAGTGTTGGCAC...TCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCCTGGAGCCGGCAGTaGCAGCAGGGGAAAGTTGAG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAWSRQ*QQGKVE
Trigger: CTCAACTTTCCCCTGCTGGCACTGCCGGCTCCAGGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp GCTGTGCTGAGTAGCCAAACGTGTCTGGCAGCCAGAACTCAGAGCACATCTTCCCCACCCGCTCGAAAGTaGTGCGCCAGTGCTTCAAGA +
Preference number: 4 (lower is better)
Translates to: AVLSSQTCLAARTQSTSSPPARK*CASASR
Trigger: TCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGG...GGAAGATGTGCTCTGAGTTCTGGCTGCCAGACACGTTTGGCTACTCAGCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKRASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp AGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTACTGTGGACATCCCGGTaGAACACAGCCAGTTTAGCC +
Preference number: 4 (lower is better)
Translates to: RAYGWLFSQLSSRRHQGLLWTSR*NTASLA
Trigger: GGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAG...TAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCCTGGAAGCTGCGCTaGCTGTCCTCCCCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNAWKLR*LSSPRP
Trigger: GGGCCTCGGGGAGGACAGCCAGCGCAGCTTCCAGGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCCCTTGTCCCGGTTGTTaGTCACAGTCTTCAGCACCT +
Preference number: 4 (lower is better)
Translates to: SGPMVGCSPSLAPGGIRVPCPGC*SQSSAP
Trigger: AGGTGCTGAAGACTGTGACCAACAACCGGGACAAGG...GACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGGAAGCCACTGTGGTTaGTCCGCCCCTTGTCCCGGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKGSHCG*SAPCPG
Trigger: ACCGGGACAAGGGGCGGACCAACCACAGTGGCTTCC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCAACATGGTCTGTGTaGGGCCACCTCCCCCATCCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPTWSV*GHLPHP
Trigger: GGGATGGGGGAGGTGGCCCCACACAGACCATGTTGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCCAACATGGTCTGTGTaGGGCCACCTCCCCCATCCC +
Preference number: 4 (lower is better)
Translates to: LEILSLLTARAEQPYEKQPTWSV*GHLPHP
Trigger: GGGATGGGGGAGGTGGCCCCACACAGACCATGTTGG...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCCGGGTATAGGAACTaGGCACTTCGGGCTAGGGCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAGYRN*ALRARA
Trigger: GGCCCTAGCCCGAAGTGCCCAGTTCCTATACCCGGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCTTGTGCGTCGGCCTCTaGAGGTGCCCAAACTGGATC +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPLCVGL*RCPNWI
Trigger: GATCCAGTTTGGGCACCTCCAGAGGCCGACGCACAA...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAAAAGGCACTCCAGGTaGTGTCAGGGGCCGGGCCTG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKKRHSR*CQGPGL
Trigger: CAGGCCCGGCCCCTGACACCACCTGGAGTGCCTTTT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
3UTR CAA 72 bp CTCCGTATTCTAGCAGGGAACTCCACCTTCAGGAACTaGTGGGCCTCGTGCCAGTGCACCTCAGTGTGGAAG +
Preference number: 4 (lower is better)
Translates to: LRILAGNSTFRN*WASCQCTSVWK
Trigger: CTTCCACACTGAGGTGCACTGGCACGAGGCCCACAAGTTCCTGAAGGTGGAGTTCCCTGCTAGAATACGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTGAAGGTTACAGTCGGTaGAGTAGATCGGGGACACGA +
Preference number: 4 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVEGYSR*SRSGTR
Trigger: TCGTGTCCCCGATCTACTTCACCGACTGTAACCTTC...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTGGGGGAGCTGTGCTaGGTAGCCAAACGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLGELC*VAKRVW
Trigger: CCAGACACGTTTGGCTACTCAGCACAGCTCCCCCAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGCCACAGCCTTGCATaGTCTGGGGGAGCTGTGCTG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCHSLA*SGGAVL
Trigger: CAGCACAGCTCCCCCAGATCATGCAAGGCTGTGGCA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGTGCCACAGCCTTGCATaGTCTGGGGGAGCTGTGCTG +
Preference number: 4 (lower is better)
Translates to: LEILSLLTARAEQPYEKQCHSLA*SGGAVL
Trigger: CAGCACAGCTCCCCCAGATCATGCAAGGCTGTGGCA...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGCCCTGCATTCCATATaGGTCTCCAGGTGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPALHSI*VSRWEV
Trigger: CACTTCCCACCTGGAGACTCATATGGAATGCAGGGC...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGGGGTGCACGCAACAGTaGGAGGCTGAGGACGTTGCC +
Preference number: 4 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRGCTQQ*EAEDVA
Trigger: GGCAACGTCCTCAGCCTCTCACTGTTGCGTGCACCC...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCCCAGCAGGGGAAAGTTaGGGTTGTAGGCAGCATGGA +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPPAGES*GCRQHG
Trigger: TCCATGCTGCCTACAACCTCAACTTTCCCCTGCTGG...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CTCCAGTATCTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTAAAGTGGTGCGCCAGTaGTTCAAGAACGGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: LQYLRWKPDPAHTGNLRSKVVRQ*FKNGAA
Trigger: GGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTT...AGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACCCGCTCGAAAGTGGTaGGCCAGTGCTTCAAGAACG +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKPARKW*ASASRT
Trigger: CGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGG...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TTTGGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGCTTTCTCCATCCCCGCTCGAAAGTGGTaGGCCAGTGCTTCAAGAACG +
Preference number: 4 (lower is better)
Translates to: FGQTLDRFPITPDKAFSIPARKW*ASASRT
Trigger: CGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGG...GATGGAGAAAGCCTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKKLSPT*AGLKFC
Trigger: GCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp AAACTGGATCTCATAGGTAGCCTGGGGGCTCCGTATTCTAGCAGGGAACTCCACCCAGGAGAAGATAGCTaGACCCTGGGCAGCCCATCA +
Preference number: 4 (lower is better)
Translates to: KLDLIGSLGAPYSSRELHPGEDS*TLGSPS
Trigger: TGATGGGCTGCCCAGGGTGCAGCTATCTTCTCCTGG...GTGGAGTTCCCTGCTAGAATACGGAGCCCCCAGGCTACCTATGAGATCCAGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp GAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAAGCCTCCAGAGGTGCTaGAGCTGGGCTGCCGGGTAT +
Preference number: 4 (lower is better)
Translates to: EILSLLTARAEQPYEKQQSLQRC*SWAAGY
Trigger: ATACCCGGCAGCCCAGCTGCAGCACCTCTGGAGGCT...TTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGACTGCCACCAGCTGAATaGAGCTTCCAGTCACCACAT +
Preference number: 4 (lower is better)
Translates to: IQEASGPMVGCSPSLAPGLPPAE*SFQSPH
Trigger: ATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAG...TCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp GCCAGTGCACCTCAGTGTGGAAGCGGACATAGGGGCAGCCAACATCTAGCACAACTGCCACCAGCTGAATaGAGCTTCCAGTCACCACAT +
Preference number: 4 (lower is better)
Translates to: ASAPQCGSGHRGSQHLAQLPPAE*SFQSPH
Trigger: ATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAG...TTGTGCTAGATGTTGGCTGCCCCTATGTCCGCTTCCACACTGAGGTGCACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp CAGGCTCCAGGCCTCCTGTCCAGCCATCATCTCCCTGCTGACTTTTTATCTCAAACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: QAPGLLSSHHLPADFLSQTQGCG*STEQWV
Trigger: AACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGT...TTGAGATAAAAAGTCAGCAGGGAGATGATGGCTGGACAGGAGGCCTGGAGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ACATCTTCCCAAACTCTTGCAGAAAGAAGTTCTGGCCCTGCAGGAACTGCCTCACGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: TSSQTLAERSSGPAGTASRASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...TGAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAGCAGGTCCACCATGTaGGTCCGAAGCTGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSRSTM*VRSCRR
Trigger: TCGGCGACAGCTTCGGACCCACATGGTGGACCTGCT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTCTGGAACATCTTCTCTaGGTCAGGGGCTGCGATCAT +
Preference number: 4 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVLEHLL*VRGCDH
Trigger: ATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAG...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp GTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGATGGAGGCCAGGGCTTTaGCTGCTGGGTAAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: VTLGLAPGNTLPPYSPCRWRPGL*LLGKSQ
Trigger: CTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCA...TCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCTCCAGGTGGGAAGTaGACCAGCACTCGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSPGGK*TSTREP
Trigger: TGGCTCCCGAGTGCTGGTCCACTTCCCACCTGGAGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAAAAGAGGAAGCCACTGTaGTTGGTCCGCCCCTTGTCC +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKKRKPL*LVRPLS
Trigger: GGACAAGGGGCGGACCAACCACAGTGGCTTCCTCTT...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCAGAGGTGCTGCAGCTaGGCTGCCGGGTATAGGAAC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKQRCCS*AAGYRN
Trigger: GTTCCTATACCCGGCAGCCCAGCTGCAGCACCTCTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCTAGCACAACCTCCTaGCTGAGCCGGCTGTTGGGG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSSTTS*LSRLLG
Trigger: CCCCAACAGCCGGCTCAGCCAGGAGGTTGTGCTAGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGGGAAAGGTGACCAGTaGGGTCTCGCTGCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKGKGDQ*GLAAPG
Trigger: TCCTGGAGCAGCGAGACCCCACTGGTCACCTTTCCC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGTGCACAGCTGTCCTaGGTCTCTCTCCAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCAQLS*VSLQCR
Trigger: ACGGCACTGGAGAGAGACTCAGGACAGCTGTGCACA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGTGTGCACAGCTGTCCTaGGTCTCTCTCCAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: LEILSLLTARAEQPYEKQCAQLS*VSLQCR
Trigger: ACGGCACTGGAGAGAGACTCAGGACAGCTGTGCACA...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAGGCACCATTATACTAGGGCCAGGCTGCTaGGCACCTCCACGTCATGAA +
Preference number: 4 (lower is better)
Translates to: LLTARAEQPYEKQQGTIILGPGC*APPRHE
Trigger: TTCATGACGTGGAGGTGCTCAGCAGCCTGGCCCTAG...TATAATGGTGCCTTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp GTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGATCTTCTGCCACCAGCTaGATGCAGCTTCCAGTCACC +
Preference number: 4 (lower is better)
Translates to: VTLGLAPGNTLPPYSPCRSSATS*MQLPVT
Trigger: GGTGACTGGAAGCTGCATTCAGCTGGTGGCAGAAGA...TCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGAGGAGGGGCTGCAGTaGAGTAGGGGTGGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNEEGLQ*SRGGSR
Trigger: CCTGCTCCCACCCCTACTTCACTGCAGCCCCTCCTC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGGAGGAGGGGCTGCAGTaGAGTAGGGGTGGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: FLSQSPLAYGHPRSPVSEEEGLQ*SRGGSR
Trigger: CCTGCTCCCACCCCTACTTCACTGCAGCCCCTCCTC...CTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAAAGTGGTGCGCCAGTaGTTCAAGAACGGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKKVVRQ*FKNGAA
Trigger: GGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp GAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGC +
Preference number: 4 (lower is better)
Translates to: EILSLLTARAEQPYEKQQKLSPT*AGLKFC
Trigger: GCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTT...TTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCAGGGGCTGCGATCATaGTTCCCTTCCCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNQGLRS*FPSRPP
Trigger: TGGGGGCCGGGAAGGGAAGCATGATCGCAGCCCCTG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp GAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAATCTGGTTGGCTGTGTaGAGGGCCTGGAAGCTGCGC +
Preference number: 4 (lower is better)
Translates to: EILSLLTARAEQPYEKQQIWLAV*RAWKLR
Trigger: GCGCAGCTTCCAGGCCCTGCACACAGCCAACCAGAT...TTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCAGGAGAAGATAGCTaGACCCTGGGCAGCCCATCA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPGEDS*TLGSPS
Trigger: TGATGGGCTGCCCAGGGTGCAGCTATCTTCTCCTGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKTQGCG*STEQWV
Trigger: AACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCCGGCACACAAGGCTaGGGCTGCAGCACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPGTQG*GCSTEQ
Trigger: CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCAGCAATGGCTTCCCTaGCAGAAGCCACCAGGACCA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKQQWLP*QKPPGP
Trigger: TGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGGAGGCCACCTTCAGTaGCCACTGCCAGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNGGHLQ*PLPGSL
Trigger: CAGGGACCCTGGCAGTGGGCACTGAAGGTGGCCTCC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCAGGAACCAGGCACTaGCCCGGAGGCCACCTTCAG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNAGTRH*PGGHLQ
Trigger: CTGAAGGTGGCCTCCGGGGCAGTGCCTGGTTCCTGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGAGCAGTCCACATGGCTaGCATGAGCCTCGTACAGCC +
Preference number: 4 (lower is better)
Translates to: LEILSLLTARAEQPYEKQSSPHG*HEPRTA
Trigger: GGCTGTACGAGGCTCATGGCAGCCATGTGGACTGCT...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAGCAGTCCACATGGCTaGCATGAGCCTCGTACAGCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSSPHG*HEPRTA
Trigger: GGCTGTACGAGGCTCATGGCAGCCATGTGGACTGCT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp AAGCCAGGCTGTATCAATGTGACAGTGTCCCATGGCATGGATGGTATGCTGGCTCCACCCGCTCGAAAGTaGTGCGCCAGTGCTTCAAGA +
Preference number: 4 (lower is better)
Translates to: KPGCINVTVSHGMDGMLAPPARK*CASASR
Trigger: TCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGG...AGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGCCTGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
CDS-3UTR CCA 90 bp ACATCTTCCCAAACTCTTGCAGAAAGAAGTTCTGGCCCTGCAGGAACTGCCTCAAGCAGGTCCACCATGTaGGTCCGAAGCTGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: TSSQTLAERSSGPAGTASSRSTM*VRSCRR
Trigger: TCGGCGACAGCTTCGGACCCACATGGTGGACCTGCT...TGAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp ACTGCCTCACCATGGCCTCTCCACTGGGAAGGTTCCCATCCATTTCTACCCAGGTTAGCCTGGCTCAGCTaGAACATCTTCTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: TASPWPLHWEGSHPFLPRLAWLS*NIFSGS
Trigger: TGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAA...CCTGGGTAGAAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGGTGAGGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp GGCATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTTGTGCCTGAGACTGTGGACATCCCGGTaGAACACAGCCAGTTTAGCC +
Preference number: 4 (lower is better)
Translates to: GMQTRVLALDPFKLLCLRLWTSR*NTASLA
Trigger: GGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAG...TCTCAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp CTCCAGTATCTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTTCCACCAGGAGACTGTaGACATCCCGGTGGAACACA +
Preference number: 4 (lower is better)
Translates to: LQYLRWKPDPAHTGNLRSSTRRL*TSRWNT
Trigger: TGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGA...AGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCTCCCCGAGGCCCTTaGCCACACCCAGCAACAGCT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPPRGP*PHPATA
Trigger: AGCTGTTGCTGGGTGTGGCCAAGGGCCTCGGGGAGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCCCAGTTGTTCACCATCTGGTTaGCTGTGTGCAGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: SMAGCSPSLTLAHSFPPSCSPSG*LCAGPG
Trigger: TCCAGGCCCTGCACACAGCCAACCAGATGGTGAACA...ACTGGGAGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGGAACTGCCTCACCATaGCCTCTCCACTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKGTASP*PLHWEG
Trigger: ACCTTCCCAGTGGAGAGGCCATGGTGAGGCAGTTCC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCTGCAGAAAGAAGTTCTaGCCCTGCAGGAACTGCCTC +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPCRKKF*PCRNCL
Trigger: GAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCA...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAAGAGGAAGCCACTGTaGTTGGTCCGCCCCTTGTCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKKRKPL*LVRPLS
Trigger: GGACAAGGGGCGGACCAACCACAGTGGCTTCCTCTT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTTCAATCGGTCCAACATaGTCTGTGTGGGGCCACCTC +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPSIGPT*SVWGHL
Trigger: GAGGTGGCCCCACACAGACCATGTTGGACCGATTGA...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGAGCCCCACAAGGCTTaGGCAGTGCCAACACTTCAG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKEPHKA*AVPTLQ
Trigger: CTGAAGTGTTGGCACTGCCCAAGCCTTGTGGGGCTC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGGAGGTCACAAAGGGTaGCCTCCTGAACAGGCAACG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKGGHKG*PPEQAT
Trigger: CGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
3UTR CAA 72 bp GCGTGGGCTTATCTGGGCAAGTTGTATGACCTCCAGTaGCTCCTGACCTCTAGGCCTCAGGTCCAACTTCAT +
Preference number: 4 (lower is better)
Translates to: AWAYLGKLYDLQ*LLTSRPQVQLH
Trigger: ATGAAGTTGGACCTGAGGCCTAGAGGTCAGGAGCAACTGGAGGTCATACAACTTGCCCAGATAAGCCCACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
3UTR CAA 72 bp CTAGAACGAGGCATAGCGTGGGCTTATCTGGGCAAGTaGTATGACCTCCAGTTGCTCCTGACCTCTAGGCCT +
Preference number: 4 (lower is better)
Translates to: LERGIAWAYLGK*YDLQLLLTSRP
Trigger: AGGCCTAGAGGTCAGGAGCAACTGGAGGTCATACAACTTGCCCAGATAAGCCCACGCTATGCCTCGTTCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
CDS-3UTR TCA 90 bp TGGTGTGGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGTCAGGAAGCGCGAAGGTTACAGTCGGTaGAGTAGATCGGGGACACGA +
Preference number: 4 (lower is better)
Translates to: WCGKELTKFQLSFWVRKREGYSR*SRSGTR
Trigger: TCGTGTCCCCGATCTACTTCACCGACTGTAACCTTC...GCGCTTCCTGACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
CDS-3UTR TCA 90 bp CTTTTCGCCTTCTTTGGTCAAACCCTGGACAGGTTCCCCATCACGCCAGACAAGGAAGGTTACAGTCGGTaGAGTAGATCGGGGACACGA +
Preference number: 4 (lower is better)
Translates to: LFAFFGQTLDRFPITPDKEGYSR*SRSGTR
Trigger: TCGTGTCCCCGATCTACTTCACCGACTGTAACCTTC...CTTGTCTGGCGTGATGGGGAACCTGTCCAGGGTTTGACCAAAGAAGGCGAAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000161393.8
ENSMUST00000162915.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCCCTGCATTCCATATaGGTCTCCAGGTGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKALHSI*VSRWEV
Trigger: CACTTCCCACCTGGAGACTCATATGGAATGCAGGGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCATCATGGAACTGGTTaGGGAGCAGGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKHHGTG*GAGASR
Trigger: TCTGGAGGCTCCTGCTCCTCAACCAGTTCCATGATG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCTTCTGCCACCAGCTaGATGCAGCTTCCAGTCACC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSSATS*MQLPVT
Trigger: GGTGACTGGAAGCTGCATTCAGCTGGTGGCAGAAGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTGCGGCTGCAGCACTaGGCAGTGGGTTGCCATGAG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLRLQH*AVGCHE
Trigger: CTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCATACTTGCAGTTGTTaGGCAGGGCCAGCCCAAAGT +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPHTCSC*AGPAQS
Trigger: ACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATG...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGGGTGCACGCAACAGTaGGAGGCTGAGGACGTTGCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNGCTQQ*EAEDVA
Trigger: GGCAACGTCCTCAGCCTCTCACTGTTGCGTGCACCC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCAGCAGGGGAAAGTTaGGGTTGTAGGCAGCATGGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPAGES*GCRQHG
Trigger: TCCATGCTGCCTACAACCTCAACTTTCCCCTGCTGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGACCTCTCAGCCTGCTTaGTGGTCTCCAGCACTACTG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKTSQPA*WSPALL
Trigger: CAGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACACCAGTGTGCGGTGCTaGTGGCACCTCTCAGCCTGC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNTSVRC*WHLSAC
Trigger: GCAGGCTGAGAGGTGCCATCAGCACCGCACACTGGT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TGCCATGAGAACGGATGTCTTCATAGTAGTTCATGGCATCTTCTGCCACCAGCTAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGC +
Preference number: 4 (lower is better)
Translates to: CHENGCLHSSSWHLLPPAKLSPT*AGLKFC
Trigger: GCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTT...AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAGACATCCGTTCTCATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159130.8
CDS-3UTR GCA 90 bp ATAGCTCTTCCCATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCATGAAGTCTGTGTTCTaGTCCATGAGCGTCACAGCT +
Preference number: 4 (lower is better)
Translates to: IALPIQEASGPMVGCSPSMKSVF*SMSVTA
Trigger: AGCTGTGACGCTCATGGAGCAGAACACAGACTTCAT...GCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGATGGGAAGAGCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCATTTCTACCCAGGTaGCCCCCACAGGCACAAACT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPFLPR*PPQAQT
Trigger: AGTTTGTGCCTGTGGGGGGCACCTGGGTAGAAATGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp GGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTATCTTCCCAAACTCTTaGAGAAAGAAGTTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: GWLFSQLSSRRHQGLWLAIFPNS*RKKFWP
Trigger: GGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGAT...AGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAAGCACCTCCTCCACACTaGCCTGCATTCCATATGAGT +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKAPPPH*PAFHMS
Trigger: ACTCATATGGAATGCAGGGCAGTGTGGAGGAGGTGC...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAGCCTCCAGAGGTGCTaGAGCTGGGCTGCCGGGTAT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSLQRC*SWAAGY
Trigger: ATACCCGGCAGCCCAGCTGCAGCACCTCTGGAGGCT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGTGCCAACACTTCAGTaGGCTTCCAGGGCAGTGTGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKVPTLQ*ASRAVC
Trigger: ACACACTGCCCTGGAAGCGCACTGAAGTGTTGGCAC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp CAGGCTCCAGGCCTCCTGTCCAGCCATCATCTCCCTGCTGACTTTTTATCTCAAGAACCGTCAGTCTCCTaGATCACAAACACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: QAPGLLSSHHLPADFLSQEPSVS*ITNTGC
Trigger: GCAGCCTGTGTTTGTGATGCAGGAGACTGACGGTTC...TTGAGATAAAAAGTCAGCAGGGAGATGATGGCTGGACAGGAGGCCTGGAGCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATAGCTCTTCCCATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCATCCATGACATCCCATaGATCCCAGTACAATGGCAC +
Preference number: 4 (lower is better)
Translates to: IALPIQEASGPMVGCSPSIHDIP*IPVQWH
Trigger: GTGCCATTGTACTGGGATGCATGGGATGTCATGGAT...GCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGATGGGAAGAGCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCCTGGAGCCGGCAGTaGCAGCAGGGGAAAGTTGAG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNAWSRQ*QQGKVE
Trigger: CTCAACTTTCCCCTGCTGGCACTGCCGGCTCCAGGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGCCACCCGCTCGAAAGTaGTGCGCCAGTGCTTCAAGA +
Preference number: 4 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRPPARK*CASASR
Trigger: TCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGG...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNRASGS*RVSPSS
Trigger: GCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCACAGCCAGTTTAGCCTaGCTCAGCTGGAACATCTTC +
Preference number: 4 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPTASLA*LSWNIF
Trigger: GAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGT...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTGTGGACATCCCGGTaGAACACAGCCAGTTTAGCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLWTSR*NTASLA
Trigger: GGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCCACCAGGAGACTGTaGACATCCCGGTGGAACACA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSTRRL*TSRWNT
Trigger: TGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGTTCACCATCTGGTTaGCTGTGTGCAGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCSPSG*LCAGPG
Trigger: TCCAGGCCCTGCACACAGCCAACCAGATGGTGAACA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGTTGGCCAAAGAACTTaGAGGCCAGGGCTTTGGCTG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKVGQRT*RPGLWL
Trigger: CAGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAAC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCCATGGCCTCTCCACTaGGAAGGTTCCCATCCATTT +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPPWPLH*EGSHPF
Trigger: AAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGG...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTGTAGCCAAACGTGTCTaGCAGCCAGAACTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPVAKRV*QPELRA
Trigger: TGCTCTGAGTTCTGGCTGCCAGACACGTTTGGCTAC...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCCGGGTATAGGAACTaGGCACTTCGGGCTAGGGCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNAGYRN*ALRARA
Trigger: GGCCCTAGCCCGAAGTGCCCAGTTCCTATACCCGGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTACCACATCATGGAACTaGTTGAGGAGCAGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPTTSWN*LRSRSL
Trigger: GAGGCTCCTGCTCCTCAACCAGTTCCATGATGTGGT...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp AAACTGGATCTCATAGGTAGCCTGGGGGCTCCGTATTCTAGCAGGGAACTCCACCCAGTCACCACATCATaGAACTGGTTGAGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: KLDLIGSLGAPYSSRELHPVTTS*NWLRSR
Trigger: CCTGCTCCTCAACCAGTTCCATGATGTGGTGACTGG...GTGGAGTTCCCTGCTAGAATACGGAGCCCCCAGGCTACCTATGAGATCCAGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR CCA 90 bp AGCAATGGCTTCCCTGCCAGAAGCCACCAGGACCAGGGAGGTAAGACAGCCAGTCTTCATAGTAGTTCATaGCATCTTCTGCCACCAGCT +
Preference number: 4 (lower is better)
Translates to: SNGFPARSHQDQGGKTASLHSSS*HLLPPA
Trigger: AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAG...ACTGGCTGTCTTACCTCCCTGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR CCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAAGAGGCCCTTGGGACCTaGCTCCCCGGCACACAAGGC +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQEALGT*LPGTQG
Trigger: GCCTTGTGTGCCGGGGAGCCAGGTCCCAAGGGCCTC...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAAAAGGCACTCCAGGTaGTGTCAGGGGCCGGGCCTG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNKRHSR*CQGPGL
Trigger: CAGGCCCGGCCCCTGACACCACCTGGAGTGCCTTTT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGAAGGTTACAGTCGGTaGAGTAGATCGGGGACACGA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKEGYSR*SRSGTR
Trigger: TCGTGTCCCCGATCTACTTCACCGACTGTAACCTTC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ACAGTGTCCCATGGCATGGATGGTATGCTGGCTTTCACCTCCATGTTGGCCAAAGAAGGTTACAGTCGGTaGAGTAGATCGGGGACACGA +
Preference number: 4 (lower is better)
Translates to: TVSHGMDGMLAFTSMLAKEGYSR*SRSGTR
Trigger: TCGTGTCCCCGATCTACTTCACCGACTGTAACCTTC...TTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159130.8
ENSMUST00000162915.8
CDS-3UTR TCA 90 bp GGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGTCAGGAAGCGCTTGATGCCCAAACTTCAGGGATaGCCAGTTCTACCCGAAACC +
Preference number: 4 (lower is better)
Translates to: GKELTKFQLSFWVRKRLMPKLQG*PVLPET
Trigger: GGTTTCGGGTAGAACTGGTCATCCCTGAAGTTTGGG...CATCAAGCGCTTCCTGACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCCAAACTTCAGGGATaGCCAGTTCTACCCGAAACC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPKLQG*PVLPET
Trigger: GGTTTCGGGTAGAACTGGTCATCCCTGAAGTTTGGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTGGGGGAGCTGTGCTaGGTAGCCAAACGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLGELC*VAKRVW
Trigger: CCAGACACGTTTGGCTACTCAGCACAGCTCCCCCAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGCCACAGCCTTGCATaGTCTGGGGGAGCTGTGCTG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNCHSLA*SGGAVL
Trigger: CAGCACAGCTCCCCCAGATCATGCAAGGCTGTGGCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTAGGGCCAGGCTGCTaGGCACCTCCACGTCATGAA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLGPGC*APPRHE
Trigger: TTCATGACGTGGAGGTGCTCAGCAGCCTGGCCCTAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGCTGCGGCTGCAGCACTaGGCAGTGGGTTGCCATGAG +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLLRLQH*AVGCHE
Trigger: CTCATGGCAACCCACTGCTCAGTGCTGCAGCCGCAG...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAAGAGGAGGGGCTGCAGTaGAGTAGGGGTGGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQEEGLQ*SRGGSR
Trigger: CCTGCTCCCACCCCTACTTCACTGCAGCCCCTCCTC...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCATACTTGCAGTTGTTaGGCAGGGCCAGCCCAAAGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKHTCSC*AGPAQS
Trigger: ACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGTAGGCAGCATGGATaGCACCAGCTTCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCRQHG*HQLLGR
Trigger: CCTTCCAAGAAGCTGGTGTCATCCATGCTGCCTACA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCAGCACTACTGCTGGTaGAGACACAGAAAAGGCACT +
Preference number: 4 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPQHYCW*RHRKGT
Trigger: AGTGCCTTTTCTGTGTCTTCACCAGCAGTAGTGCTG...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAAGGAAGGGAGAAAAAGTaGGCTTCAGACGGTTGTCCT +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKGREKK*ASDGCP
Trigger: AGGACAACCGTCTGAAGCTCACTTTTTCTCCCTTCC...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNKLSPT*AGLKFC
Trigger: GCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACATCTGGTTGGCTGTGTaGAGGGCCTGGAAGCTGCGC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNIWLAV*RAWKLR
Trigger: GCGCAGCTTCCAGGCCCTGCACACAGCCAACCAGAT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCACCTCCTCCACACTaGCCTGCATTCCATATGAGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAPPPH*PAFHMS
Trigger: ACTCATATGGAATGCAGGGCAGTGTGGAGGAGGTGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGAGCCTCCAGAGGTGCTaGAGCTGGGCTGCCGGGTAT +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLSLQRC*SWAAGY
Trigger: ATACCCGGCAGCCCAGCTGCAGCACCTCTGGAGGCT...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTGCCACCAGCTGAATaGAGCTTCCAGTCACCACAT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLPPAE*SFQSPH
Trigger: ATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACCCGGCACACAAGGCTaGGGCTGCAGCACTGAGCAG +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQPGTQG*GCSTEQ
Trigger: CTGCTCAGTGCTGCAGCCGCAGCCTTGTGTGCCGGG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGAACCGTCAGTCTCCTaGATCACAAACACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKEPSVS*ITNTGC
Trigger: GCAGCCTGTGTTTGTGATGCAGGAGACTGACGGTTC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTGGAACATCTTCTCTaGGTCAGGGGCTGCGATCAT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLEHLL*VRGCDH
Trigger: ATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCATATGTTCACCATCTaGTTGGCTGTGTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKHMFTI*LAVCRA
Trigger: GGCCCTGCACACAGCCAACCAGATGGTGAACATATG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCATATGTTCACCATCTaGTTGGCTGTGTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LEILSLLTARAEQPYEKQHMFTI*LAVCRA
Trigger: GGCCCTGCACACAGCCAACCAGATGGTGAACATATG...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGTGACAGTGTCCCATaGCATGGATGGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCDSVP*HGWYAG
Trigger: GCCAGCATACCATCCATGCCATGGGACACTGTCACA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCATGGCCTCTCCACTaGGAAGGTTCCCATCCATTT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPWPLH*EGSHPF
Trigger: AAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGCAGAAAGAAGTTCTaGCCCTGCAGGAACTGCCTC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCRKKF*PCRNCL
Trigger: GAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGTAGCCAAACGTGTCTaGCAGCCAGAACTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKVAKRV*QPELRA
Trigger: TGCTCTGAGTTCTGGCTGCCAGACACGTTTGGCTAC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCTCCAGGTGGGAAGTaGACCAGCACTCGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSPGGK*TSTREP
Trigger: TGGCTCCCGAGTGCTGGTCCACTTCCCACCTGGAGA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCTTGTCCCGGTTGTTaGTCACAGTCTTCAGCACCT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPCPGC*SQSSAP
Trigger: AGGTGCTGAAGACTGTGACCAACAACCGGGACAAGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGGCCGGGTATAGGAACTaGGCACTTCGGGCTAGGGCC +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLAGYRN*ALRARA
Trigger: GGCCCTAGCCCGAAGTGCCCAGTTCCTATACCCGGC...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGACCACATCATGGAACTaGTTGAGGAGCAGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKTTSWN*LRSRSL
Trigger: GAGGCTCCTGCTCCTCAACCAGTTCCATGATGTGGT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCAGTCACCACATCATaGAACTGGTTGAGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPVTTS*NWLRSR
Trigger: CCTGCTCCTCAACCAGTTCCATGATGTGGTGACTGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp GTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGATCAAACAACACAAACTaGTTCCCCAGGGCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: VTLGLAPGNTLPPYSPCRSNNTN*FPRAPS
Trigger: TGAGGGAGCCCTGGGGAACCAGTTTGTGTTGTTTGA...TCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCTAGCACAACCTCCTaGCTGAGCCGGCTGTTGGGG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSSTTS*LSRLLG
Trigger: CCCCAACAGCCGGCTCAGCCAGGAGGTTGTGCTAGA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGGGAAAGGTGACCAGTaGGGTCTCGCTGCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNGKGDQ*GLAAPG
Trigger: TCCTGGAGCAGCGAGACCCCACTGGTCACCTTTCCC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CAGAAAAAGGTATGGTGTGGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGGCCAAAGCCAGGCTTaGCCACACCCAGCAACAGCT +
Preference number: 4 (lower is better)
Translates to: QKKVWCGKELTKFQLSFWGQSQA*PHPATA
Trigger: AGCTGTTGCTGGGTGTGGCCAAGCCTGGCTTTGGCC...CCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCATACCTTTTTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCAAGTTGTTGTGCCTTaGCCACACCCAGCAACAGCT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKQVVVP*PHPATA
Trigger: AGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp GAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAACCCAAACTTCAGGGATaGCCAGTTCTACCCGAAACC +
Preference number: 4 (lower is better)
Translates to: EILSLLTARAEQPYEKQQPKLQG*PVLPET
Trigger: GGTTTCGGGTAGAACTGGTCATCCCTGAAGTTTGGG...TTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTGTGTTCTGCTCCATaGGCGTCACAGCTGTCGACC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLCSAP*ASQLST
Trigger: GGTCGACAGCTGTGACGCTCATGGAGCAGAACACAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGTGCACAGCTGTCCTaGGTCTCTCTCCAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNCAQLS*VSLQCR
Trigger: ACGGCACTGGAGAGAGACTCAGGACAGCTGTGCACA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCCCAGTAGCACCTCCACGTCATaGAGAATCTGCTCACATTCT +
Preference number: 4 (lower is better)
Translates to: SMAGCSPSLTLAHSFPPSSTSTS*RICSHS
Trigger: AGAATGTGAGCAGATTCTTCATGACGTGGAGGTGCT...ACTGGGAGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CTCCAGTATCTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTCTAGATGGTAATCCATaGCATCCCATGCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: LQYLRWKPDPAHTGNLRSLDGNP*HPMHPS
Trigger: ACTGGGATGCATGGGATGTCATGGATTACCATCTAG...AGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAGGCACCATTATATGTAGGCAGCATGGATaGCACCAGCTTCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: LLTARAEQPYEKQQGTIICRQHG*HQLLGR
Trigger: CCTTCCAAGAAGCTGGTGTCATCCATGCTGCCTACA...TATAATGGTGCCTTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCAGCACTACTGCTGGTaGAGACACAGAAAAGGCACT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKQHYCW*RHRKGT
Trigger: AGTGCCTTTTCTGTGTCTTCACCAGCAGTAGTGCTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGGAAGGGAGAAAAAGTaGGCTTCAGACGGTTGTCCT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKGREKK*ASDGCP
Trigger: AGGACAACCGTCTGAAGCTCACTTTTTCTCCCTTCC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAAAGTGGTGCGCCAGTaGTTCAAGAACGGCGCTGCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNKVVRQ*FKNGAA
Trigger: GGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCCGCTCGAAAGTGGTaGGCCAGTGCTTCAAGAACG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPARKW*ASASRT
Trigger: CGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCAGGAGAAGATAGCTaGACCCTGGGCAGCCCATCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPGEDS*TLGSPS
Trigger: TGATGGGCTGCCCAGGGTGCAGCTATCTTCTCCTGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNTQGCG*STEQWV
Trigger: AACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCAGCAATGGCTTCCCTaGCAGAAGCCACCAGGACCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNQQWLP*QKPPGP
Trigger: TGGTCCTGGTGGCTTCTGGCAGGGAAGCCATTGCTG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAGCAGTCCACATGGCTaGCATGAGCCTCGTACAGCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSSPHG*HEPRTA
Trigger: GGCTGTACGAGGCTCATGGCAGCCATGTGGACTGCT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCATTCAAGTTGTTGTaGCTTGGCCACACCCAGCAA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPFKLL*LGHTQQ
Trigger: TTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCACCCGCTCGAAAGTaGTGCGCCAGTGCTTCAAGA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPPARK*CASASR
Trigger: TCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TGGAAAGGAGTTGACCAAGTTCCAGCTCAGTTTCTGGGTCAGGAAGCGCTTGATCTGGAACATCTTCTCTaGGTCAGGGGCTGCGATCAT +
Preference number: 4 (lower is better)
Translates to: WKGVDQVPAQFLGQEALDLEHLL*VRGCDH
Trigger: ATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAG...ATCAAGCGCTTCCTGACCCAGAAACTGAGCTGGAACTTGGTCAACTCCTTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGGAGGCCAGGGCTTTaGCTGCTGGGTAAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNWRPGL*LLGKSQ
Trigger: CTGAGACTTACCCAGCAGCCAAAGCCCTGGCCTCCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCATGGATGGTATGCTaGCTTTCACCTCCATGTTGG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAWMVC*LSPPCW
Trigger: CCAACATGGAGGTGAAAGCCAGCATACCATCCATGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTTCCAGCTCAGTTTCTaGGTCAGGAAGCGCTTGATG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKFQLSF*VRKRLM
Trigger: CATCAAGCGCTTCCTGACCCAGAAACTGAGCTGGAA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGCAGAGGTGCTGCAGCTaGGCTGCCGGGTATAGGAAC +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLQRCCS*AAGYRN
Trigger: GTTCCTATACCCGGCAGCCCAGCTGCAGCACCTCTG...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR CCA 90 bp CTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAGGCACCATTATACCAGTCACCACATCATaGAACTGGTTGAGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: LLTARAEQPYEKQQGTIIPVTTS*NWLRSR
Trigger: CCTGCTCCTCAACCAGTTCCATGATGTGGTGACTGG...TATAATGGTGCCTTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGAGCCCCACAAGGCTTaGGCAGTGCCAACACTTCAG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNEPHKA*AVPTLQ
Trigger: CTGAAGTGTTGGCACTGCCCAAGCCTTGTGGGGCTC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCAAACAACACAAACTaGTTCCCCAGGGCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSNNTN*FPRAPS
Trigger: TGAGGGAGCCCTGGGGAACCAGTTTGTGTTGTTTGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTTGTGCGTCGGCCTCTaGAGGTGCCCAAACTGGATC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLCVGL*RCPNWI
Trigger: GATCCAGTTTGGGCACCTCCAGAGGCCGACGCACAA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGGGAGGTCACAAAGGGTaGCCTCCTGAACAGGCAACG +
Preference number: 4 (lower is better)
Translates to: FLSQSPLAYGHPRSPVSEGGHKG*PPEQAT
Trigger: CGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCC...CTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGGAGGTCACAAAGGGTaGCCTCCTGAACAGGCAACG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNGGHKG*PPEQAT
Trigger: CGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp GTTCCTGCTCTTTGGAGATCAGCAGCCCTCCCCTGTACCCAAACCATGACAGACAGTACAGCAAGGAGCTaGCTGTATCAATGTGACAGT +
Preference number: 4 (lower is better)
Translates to: VPALWRSAALPCTQTMTDSTARS*LYQCDS
Trigger: ACTGTCACATTGATACAGCCAGCTCCTTGCTGTACT...GTCTGTCATGGTTTGGGTACAGGGGAGGGCTGCTGATCTCCAAAGAGCAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCAAGTTGTTGTGCCTaGGAGCAGGCAAAGATGAAG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSSCCA*EQAKMK
Trigger: CTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCCCTGCATTCCATATaGGTCTCCAGGTGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNALHSI*VSRWEV
Trigger: CACTTCCCACCTGGAGACTCATATGGAATGCAGGGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGTGTGCACAGCTGTCCTaGGTCTCTCTCCAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLCAQLS*VSLQCR
Trigger: ACGGCACTGGAGAGAGACTCAGGACAGCTGTGCACA...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGAGCACCTCCACGTCATaGAGAATCTGCTCACATTCT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSTSTS*RICSHS
Trigger: AGAATGTGAGCAGATTCTTCATGACGTGGAGGTGCT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACTAGGGCCAGGCTGCTaGGCACCTCCACGTCATGAA +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQLGPGC*APPRHE
Trigger: TTCATGACGTGGAGGTGCTCAGCAGCCTGGCCCTAG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCATCATGGAACTGGTTaGGGAGCAGGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNHHGTG*GAGASR
Trigger: TCTGGAGGCTCCTGCTCCTCAACCAGTTCCATGATG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTAGATGGTAATCCATaGCATCCCATGCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLDGNP*HPMHPS
Trigger: ACTGGGATGCATGGGATGTCATGGATTACCATCTAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACACCTCTCAGCCTGCTTaGTGGTCTCCAGCACTACTG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNTSQPA*WSPALL
Trigger: CAGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCAGTTTGGTGGAGACTaGAGCACAAGCAATAGGGAT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKQFGGD*STSNRD
Trigger: ATCCCTATTGCTTGTGCTTCAGTCTCCACCAAACTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGATGAAGTCTGTGTTCTaGTCCATGAGCGTCACAGCT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKMKSVF*SMSVTA
Trigger: AGCTGTGACGCTCATGGAGCAGAACACAGACTTCAT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGACACAAGGCTGCGGCTaGAGCACTGAGCAGTGGGTT +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLTQGCG*STEQWV
Trigger: AACCCACTGCTCAGTGCTGCAGCCGCAGCCTTGTGT...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGATCCATGACATCCCATaGATCCCAGTACAATGGCAC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKIHDIP*IPVQWH
Trigger: GTGCCATTGTACTGGGATGCATGGGATGTCATGGAT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATCTTCCCAAACTCTTGCAGAAAGAAGTTCTGGCCCTGCAGGAACTGCCTCACCCGCTCAGGACATAACTaGTCTTTTCGCCTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: IFPNSCRKKFWPCRNCLTRSGHN*SFRLLW
Trigger: CCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCG...GGTGAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCGCTCAGGACATAACTaGTCTTTTCGCCTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKRSGHN*SFRLLW
Trigger: CCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTTAGCCTGGCTCAGCTaGAACATCTTCTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRLAWLS*NIFSGS
Trigger: TGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAA...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp ACATCTTCCCAAACTCTTGCAGAAAGAAGTTCTGGCCCTGCAGGAACTGCCTCAACAGCCAGTTTAGCCTaGCTCAGCTGGAACATCTTC +
Preference number: 4 (lower is better)
Translates to: TSSQTLAERSSGPAGTASTASLA*LSWNIF
Trigger: GAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGT...TGAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTGTGGACATCCCGGTaGAACACAGCCAGTTTAGCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLWTSR*NTASLA
Trigger: GGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCAATCGGTCCAACATaGTCTGTGTGGGGCCACCTC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSIGPT*SVWGHL
Trigger: GAGGTGGCCCCACACAGACCATGTTGGACCGATTGA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACTTCATAGTAGTTCATaGCATCTTCTGCCACCAGCT +
Preference number: 4 (lower is better)
Translates to: PLEILSLLTARAEQPYEKLHSSS*HLLPPA
Trigger: AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAG...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGGAGCCCCACAAGGCTTaGGCAGTGCCAACACTTCAG +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLEPHKA*AVPTLQ
Trigger: CTGAAGTGTTGGCACTGCCCAAGCCTTGTGGGGCTC...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
3UTR CAA 72 bp CAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTaGTGCCTGAGAGCAGGCAAAGATGAAGTCTGTGTT +
Preference number: 4 (lower is better)
Translates to: QTRVLALDPFKL*CLRAGKDEVCV
Trigger: AACACAGACTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
ENSMUST00000161338.2
3UTR CAA 72 bp ATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTaGTTGTGCCTGAGAGCAGGCAAAGATGAAGTCTGT +
Preference number: 4 (lower is better)
Translates to: MQTRVLALDPFK*LCLRAGKDEVC
Trigger: ACAGACTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159130.8
ENSMUST00000160584.8
ENSMUST00000161338.2
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCCAAACTTCAGGGATaGCCAGTTCTACCCGAAACC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPKLQG*PVLPET
Trigger: GGTTTCGGGTAGAACTGGTCATCCCTGAAGTTTGGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCAGGCTGTATCAATGTaGCAGTGTCCCATGGCATGG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNQAVSM*QCPMAW
Trigger: CCATGCCATGGGACACTGTCACATTGATACAGCCTG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGTCTTCTGCCACCAGCTaGATGCAGCTTCCAGTCACC +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLSSATS*MQLPVT
Trigger: GGTGACTGGAAGCTGCATTCAGCTGGTGGCAGAAGA...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCATACTTGCAGTTGTTaGGCAGGGCCAGCCCAAAGT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNHTCSC*AGPAQS
Trigger: ACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGTAGGCAGCATGGATaGCACCAGCTTCTTGGAAGG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNCRQHG*HQLLGR
Trigger: CCTTCCAAGAAGCTGGTGTCATCCATGCTGCCTACA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp CTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAGGCACCATTATACAGTTTGGTGGAGACTaGAGCACAAGCAATAGGGAT +
Preference number: 4 (lower is better)
Translates to: LLTARAEQPYEKQQGTIIQFGGD*STSNRD
Trigger: ATCCCTATTGCTTGTGCTTCAGTCTCCACCAAACTG...TATAATGGTGCCTTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACATCATGGAACTGGTTaGGGAGCAGGAGCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQHHGTG*GAGAWA
Trigger: TGCCCAGGCTCCTGCTCCTCAACCAGTTCCATGATG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp CTTGACCCATTCAAGTTGTTGTGCCTGAGAGCAGGCAAAGATGAAGTCTGTGTTCTGGCTGTATCAATGTaGCAGTGTCCCATGGCATGG +
Preference number: 4 (lower is better)
Translates to: LDPFKLLCLRAGKDEVCVLAVSM*QCPMAW
Trigger: CCATGCCATGGGACACTGTCACATTGATACAGCCAG...AACACAGACTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGGGTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161338.2
CDS-3UTR GCA 90 bp CTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAAGGCACCATTATAATGGCATGGATGGTATaGTGGCTTTCACCTCCATGT +
Preference number: 4 (lower is better)
Translates to: LLTARAEQPYEKQQGTIIMAWMV*WLSPPC
Trigger: ACATGGAGGTGAAAGCCAGCATACCATCCATGCCAT...TATAATGGTGCCTTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCCATTCAAGTTGTTGTaGCTGAGAGCAGGCAAAGAT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKPFKLL*LRAGKD
Trigger: ATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp CTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCCATTCAAGTTGTTGTaGCTGAGAGCAGGCAAAGAT +
Preference number: 4 (lower is better)
Translates to: LEILSLLTARAEQPYEKQPFKLL*LRAGKD
Trigger: ATCTTTGCCTGCTCTCAGGCACAACAACTTGAATGG...CTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR GCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGATCTTCCCAAACTCTTaGAGAAAGAAGTTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKIFPNS*RKKFWP
Trigger: GGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGAT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCACCTCCTCCACACTaGCCTGCATTCCATATGAGT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNAPPPH*PAFHMS
Trigger: ACTCATATGGAATGCAGGGCAGTGTGGAGGAGGTGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTGCCACCAGCTGAATaGAGCTTCCAGTCACCACAT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLPPAE*SFQSPH
Trigger: ATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGAACCGTCAGTCTCCTaGATCACAAACACAGGCTGC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNEPSVS*ITNTGC
Trigger: GCAGCCTGTGTTTGTGATGCAGGAGACTGACGGTTC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp GAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAACGCTCAGGACATAACTaGTCTTTTCGCCTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: EILSLLTARAEQPYEKQQRSGHN*SFRLLW
Trigger: CCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCG...TTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTGGAACATCTTCTCTaGGTCAGGGGCTGCGATCAT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLEHLL*VRGCDH
Trigger: ATGATCGCAGCCCCTGACCCAGAGAAGATGTTCCAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGTGTGACAGTGTCCCATaGCATGGATGGTATGCTGGC +
Preference number: 4 (lower is better)
Translates to: FLSQSPLAYGHPRSPVSECDSVP*HGWYAG
Trigger: GCCAGCATACCATCCATGCCATGGGACACTGTCACA...CTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCATGGCCTCTCCACTaGGAAGGTTCCCATCCATTT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPWPLH*EGSHPF
Trigger: AAATGGATGGGAACCTTCCCAGTGGAGAGGCCATGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGCAGAAAGAAGTTCTaGCCCTGCAGGAACTGCCTC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNCRKKF*PCRNCL
Trigger: GAGGCAGTTCCTGCAGGGCCAGAACTTCTTTCTGCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGTAGCCAAACGTGTCTaGCAGCCAGAACTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNVAKRV*QPELRA
Trigger: TGCTCTGAGTTCTGGCTGCCAGACACGTTTGGCTAC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACACCACATCATGGAACTaGTTGAGGAGCAGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNTTSWN*LRSRSL
Trigger: GAGGCTCCTGCTCCTCAACCAGTTCCATGATGTGGT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCTTCATAGTAGTTCATaGCATCTTCTGCCACCAGCT +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKLHSSS*HLLPPA
Trigger: AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACATCATGGAACTGGTTaGGGAGCAGGAGCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQHHGTG*GAGASR
Trigger: TCTGGAGGCTCCTGCTCCTCAACCAGTTCCATGATG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCAGCACTACTGCTGGTaGAGACACAGAAAAGGCACT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNQHYCW*RHRKGT
Trigger: AGTGCCTTTTCTGTGTCTTCACCAGCAGTAGTGCTG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGCTGCCACCAGCTGAATaGAGCTTCCAGTCACCACAT +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLLPPAE*SFQSPH
Trigger: ATGTGGTGACTGGAAGCTGCATTCAGCTGGTGGCAG...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR GCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAAGTGCCAACACTTCAGTaGGCTTCCAGGGCAGTGTGT +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQVPTLQ*ASRAVC
Trigger: ACACACTGCCCTGGAAGCGCACTGAAGTGTTGGCAC...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTTAGCCTGGCTCAGCTaGAACATCTTCTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLAWLS*NIFSGS
Trigger: TGACCCAGAGAAGATGTTCCAGCTGAGCCAGGCTAA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACACAGCCAGTTTAGCCTaGCTCAGCTGGAACATCTTC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNTASLA*LSWNIF
Trigger: GAAGATGTTCCAGCTGAGCCAGGCTAAACTGGCTGT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCAGTGTCCCATGGCATaGATGGTATGCTGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNQCPMA*MVCWLS
Trigger: TGAAAGCCAGCATACCATCCATGCCATGGGACACTG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTTCCAGCTCAGTTTCTaGGTCAGGAAGCGCTTGATG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNFQLSF*VRKRLM
Trigger: CATCAAGCGCTTCCTGACCCAGAAACTGAGCTGGAA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCAAACAACACAAACTaGTTCCCCAGGGCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSNNTN*FPRAPS
Trigger: TGAGGGAGCCCTGGGGAACCAGTTTGTGTTGTTTGA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGCATCCCAGTACAATaGCACATCATCAAACAACAC +
Preference number: 4 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKCIPVQ*HIIKQH
Trigger: GTGTTGTTTGATGATGTGCCATTGTACTGGGATGCA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGTCAAGTTGTTGTGCCTaGGAGCAGGCAAAGATGAAG +
Preference number: 4 (lower is better)
Translates to: FLSQSPLAYGHPRSPVSESSCCA*EQAKMK
Trigger: CTTCATCTTTGCCTGCTCTCAGGCACAACAACTTGA...CTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAGCACCTCCACGTCATaGAGAATCTGCTCACATTCT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSTSTS*RICSHS
Trigger: AGAATGTGAGCAGATTCTTCATGACGTGGAGGTGCT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCTAGATGGTAATCCATaGCATCCCATGCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNLDGNP*HPMHPS
Trigger: ACTGGGATGCATGGGATGTCATGGATTACCATCTAG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR TCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCAGTTTGGTGGAGACTaGAGCACAAGCAATAGGGAT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNQFGGD*STSNRD
Trigger: ATCCCTATTGCTTGTGCTTCAGTCTCCACCAAACTG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACATGGCATGGATGGTATaGTGGCTTTCACCTCCATGT +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNMAWMV*WLSPPC
Trigger: ACATGGAGGTGAAAGCCAGCATACCATCCATGCCAT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCGCTCAGGACATAACTaGTCTTTTCGCCTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNRSGHN*SFRLLW
Trigger: CCAAAGAAGGCGAAAAGACCAGTTATGTCCTGAGCG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAAACCACATCATGGAACTaGTTGAGGAGCAGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQTTSWN*LRSRSL
Trigger: GAGGCTCCTGCTCCTCAACCAGTTCCATGATGTGGT...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR CCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACCAGTCACCACATCATaGAACTGGTTGAGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQPVTTS*NWLRSR
Trigger: CCTGCTCCTCAACCAGTTCCATGATGTGGTGACTGG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR TCA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGAGCACCTCCACGTCATaGAGAATCTGCTCACATTCT +
Preference number: 4 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLSTSTS*RICSHS
Trigger: AGAATGTGAGCAGATTCTTCATGACGTGGAGGTGCT...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR GCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACATCTTCCCAAACTCTTaGAGAAAGAAGTTCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNIFPNS*RKKFWP
Trigger: GGGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGAT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGCATCCCAGTACAATaGCACATCATCAAACAACAC +
Preference number: 4 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNCIPVQ*HIIKQH
Trigger: GTGTTGTTTGATGATGTGCCATTGTACTGGGATGCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CCA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACTTCATAGTAGTTCATaGCATCTTCTGCCACCAGCT +
Preference number: 4 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQLHSSS*HLLPPA
Trigger: AGCTGGTGGCAGAAGATGCCATGAACTACTATGAAG...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS CCA 90 bp GCTGCACCGCCTTCTCATAGGGAAGCCTCTCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGCTGTCCCCGAAGAGCCTGCCGCGAA +
Preference number: 5 (lower is better)
Translates to: AAPPSHREASRASGS*RVSPSSCPRRACRE
Trigger: TTCGCGGCAGGCTCTTCGGGGACAGCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCGAGAGGCTTCCCTATGAGAAGGCGGTGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000034836.16
ENSMUST00000159130.8
ENSMUST00000160147.8
ENSMUST00000160584.8
ENSMUST00000161182.8
ENSMUST00000161393.8
ENSMUST00000161663.8
ENSMUST00000162915.8
CDS TCA 90 bp CCAGTGGGGTCTCGCTGCTCCAGGAGGTCACAAAGGGTGGCCTCCTaGACAGGCAACGACGTGTGCAGCCAGCAGTCCACATGGCTGCCA +
Preference number: 5 (lower is better)
Translates to: PVGSRCSRRSQRVAS*TGNDVCSQQSTWLP
Trigger: TGGCAGCCATGTGGACTGCTGGCTGCACACGTCGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCCTGGAGCAGCGAGACCCCACTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCCTGGCTGAGCCGGCTGTTGGGGCTGATCTGGAGCAGGAACCAGGCACTGCCCACATCATGGAACTGGTaGAGGAGCAGGAGCCTGGGC +
Preference number: 5 (lower is better)
Translates to: SWLSRLLGLIWSRNQALPTSWNW*RSRSLG
Trigger: GCCCAGGCTCCTGCTCCTCAACCAGTTCCATGATGT...GGGCAGTGCCTGGTTCCTGCTCCAGATCAGCCCCAACAGCCGGCTCAGCCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS CCA 90 bp GGCTTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTaGACATCCCGGTGGAACACAGCCAGTTTAGCCTGGCTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: GLATPSNSSRSTRRL*TSRWNTASLAWLSW
Trigger: CCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160584.8
CDS CCA 90 bp GCCTTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTaGACATCCCGGTGGAACACAGCCAGTTTAGCCTGGCTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: ALATPSNSSRSTRRL*TSRWNTASLAWLSW
Trigger: CCAGCTGAGCCAGGCTAAACTGGCTGTGTTCCACCGGGATGTCCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTGGCTGAGCCGGCTGTaGGGGCTGATCTGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SGPMVGCSPSLAPGGIRVWLSRL*GLIWSR
Trigger: CCTGCTCCAGATCAGCCCCAACAGCCGGCTCAGCCA...GACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS CCA 90 bp CCTCGGCAGGCAAACTCCTGGAGCCGGGCATGCAGACCAGGGTACTaGCTCTTGACCCATTCAAGTTGTTGTGCCTTGGCCACACCCAGC +
Preference number: 5 (lower is better)
Translates to: PRQANSWSRACRPGY*LLTHSSCCALATPS
Trigger: GCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTGCCGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTAGGAAGCCACTGTGGTaGGTCCGCCCCTTGTCCCGG +
Preference number: 5 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVRKPLW*VRPLSR
Trigger: CCGGGACAAGGGGCGGACCAACCACAGTGGCTTCCT...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS TCA 90 bp ATGGCACCTCTCAGCCTGCTTGATGGTCTCCAGCACTACTGCTGGTaGAGACACAGAAAAGGCACTCCAGGTGGTGTCAGGGGCCGGGCC +
Preference number: 5 (lower is better)
Translates to: MAPLSLLDGLQHYCW*RHRKGTPGGVRGRA
Trigger: GGCCCGGCCCCTGACACCACCTGGAGTGCCTTTTCTGTGTCTTCACCAGCAGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGTGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CCA 90 bp AAAGGTGACCAGTGGGGTCTCGCTGCTCCAGGAGGTCACAAAGGGTaGCCTCCTGAACAGGCAACGACGTGTGCAGCCAGCAGTCCACAT +
Preference number: 5 (lower is better)
Translates to: KGDQWGLAAPGGHKG*PPEQATTCAASSPH
Trigger: ATGTGGACTGCTGGCTGCACACGTCGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCCTGGAGCAGCGAGACCCCACTGGTCACCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS GCA 90 bp CCTCCTGAACAGGCAACGACGTGTGCAGCCAGCAGTCCACATGGCTaGCATGAGCCTCGTACAGCCTTAGAACCAGTGTGCGGTGCTGAT +
Preference number: 5 (lower is better)
Translates to: PPEQATTCAASSPHG*HEPRTALEPVCGAD
Trigger: ATCAGCACCGCACACTGGTTCTAAGGCTGTACGAGGCTCATGGCAGCCATGTGGACTGCTGGCTGCACACGTCGTTGCCTGTTCAGGAGG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCCCAGTTGGCAGCCCATCAGTGTaGCTCAGCCGCTTCAATCGG +
Preference number: 5 (lower is better)
Translates to: SQLSSRRHQGLWLAVLPVGSPSV*LSRFNR
Trigger: CCGATTGAAGCGGCTGAGCAACACTGATGGGCTGCC...AACTGGGAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGATCCCAAGAGGTGTTGTaGTGCGTCGGCCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: IQEASGPMVGCSPSLAPGSQEVL*CVGLWR
Trigger: CCTCCAGAGGCCGACGCACAACAACACCTCTTGGGA...TCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS TCA 90 bp AAGGGAGAAAAAGTGAGCTTCAGACGGTTGTCCTGGAGGGAAAGGTaGCCAGTGGGGTCTCGCTGCTCCAGGAGGTCACAAAGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: KGEKVSFRRLSWRER*PVGSRCSRRSQRVA
Trigger: GGCCACCCTTTGTGACCTCCTGGAGCAGCGAGACCCCACTGGTCACCTTTCCCTCCAGGACAACCGTCTGAAGCTCACTTTTTCTCCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS TCA 90 bp AGGCAAACTCCTGGAGCCGGGCATGCAGACCAGGGTACTGGCTCTTaGCCCATTCAAGTTGTTGTGCCTTGGCCACACCCAGCAACAGCT +
Preference number: 5 (lower is better)
Translates to: RQTPGAGHADQGTGS*PIQVVVPWPHPATA
Trigger: AGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS GCA 90 bp GGCATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTTGTaGCTTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAGACT +
Preference number: 5 (lower is better)
Translates to: GMQTRVLALDPFKLL*LGHTQQQLQVHQET
Trigger: AGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp AGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTAATGTTCACCATCTGGTaGGCTGTGTGCAGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: RAYGWLFSQLSSRRHQGLMFTIW*AVCRAW
Trigger: CCAGGCCCTGCACACAGCCAACCAGATGGTGAACAT...TAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp AGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTACCCTTGTCCCGGTTGTaGGTCACAGTCTTCAGCACC +
Preference number: 5 (lower is better)
Translates to: RAYGWLFSQLSSRRHQGLPLSRL*VTVFST
Trigger: GGTGCTGAAGACTGTGACCAACAACCGGGACAAGGG...TAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGGCTGAGCCGGCTGTaGGGGCTGATCTGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKWLSRL*GLIWSR
Trigger: CCTGCTCCAGATCAGCCCCAACAGCCGGCTCAGCCA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATCCAGGAGGCATCAGGGCCTATGGTTGGCTGTTCTCCCAGCTTAGCTCCAGGATTCCTCACAGTCTCCTaGAAGGGCCAAAGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: IQEASGPMVGCSPSLAPGFLTVS*KGQSQA
Trigger: AGCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAA...TCCTGGAGCTAAGCTGGGAGAACAGCCAACCATAGGCCCTGATGCCTCCTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCGCCCCTTGTCCCGGTaGTTGGTCACAGTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPRPLSR*LVTVFS
Trigger: GCTGAAGACTGTGACCAACAACCGGGACAAGGGGCG...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp CTGTTCTCCCAGCTTAGCTCCAGGAGGCATCAGGGTCTATGGCTGGCTGTTCTCACCCGGATGATGCCGTaGTCCAAAGTCACAGAACCG +
Preference number: 5 (lower is better)
Translates to: LFSQLSSRRHQGLWLAVLTRMMP*SKVTEP
Trigger: CGGTTCTGTGACTTTGGACAACGGCATCATCCGGGT...GAGAACAGCCAGCCATAGACCCTGATGCCTCCTGGAGCTAAGCTGGGAGAACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS TCA 90 bp GCCTTAGAACCAGTGTGCGGTGCTGATGGCACCTCTCAGCCTGCTTaGTGGTCTCCAGCACTACTGCTGGTGAAGACACAGAAAAGGCAC +
Preference number: 5 (lower is better)
Translates to: ALEPVCGADGTSQPA*WSPALLLVKTQKRH
Trigger: GTGCCTTTTCTGTGTCTTCACCAGCAGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGTGCCATCAGCACCGCACACTGGTTCTAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp GCCAGTGCACCTCAGTGTGGAAGCGGACATAGGGGCAGCCAACATCTAGCACAATTCCAGGGCAGTGTGTaGATAATGAGGAGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: ASAPQCGSGHRGSQHLAQFQGSV*IMRRPL
Trigger: CAAGGGCCTCCTCATTATCAACACACTGCCCTGGAA...TTGTGCTAGATGTTGGCTGCCCCTATGTCCGCTTCCACACTGAGGTGCACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160426.8
CDS-3UTR CAA 90 bp CACACCGGTAACCTTAGGTCTTGCCCCTGGAAATACTCTCCCTCCTTACAGCCCGAGCGTAGCCAATACTaGGCACTGTCACCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: HTGNLRSCPWKYSPSLQPERSQY*ALSPGL
Trigger: TAGCCCTGGTGACAGTGCCAAGTATTGGCTACGCTC...GGGCTGTAAGGAGGGAGAGTATTTCCAGGGGCAAGACCTAAGGTTACCGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTCCCAAGAGGTGTTGTaGTGCGTCGGCCTCTGGAGG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKSQEVL*CVGLWR
Trigger: CCTCCAGAGGCCGACGCACAACAACACCTCTTGGGA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp CTCCAGTATCTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTGCTCCATACTTGCAGTaGTTGAGCAGGGCCAGCCCA +
Preference number: 5 (lower is better)
Translates to: LQYLRWKPDPAHTGNLRSAPYLQ*LSRASP
Trigger: TGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGC...AGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp CAGGCTCCAGGCCTCCTGTCCAGCCATCATCTCCCTGCTGACTTTTTATCTCAAGAGAGGCTGAGGACGTaGCCTCGTACTGATGCTCCA +
Preference number: 5 (lower is better)
Translates to: QAPGLLSSHHLPADFLSQERLRT*PRTDAP
Trigger: TGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTC...TTGAGATAAAAAGTCAGCAGGGAGATGATGGCTGGACAGGAGGCCTGGAGCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGATGTTCACCATCTGGTaGGCTGTGTGCAGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKMFTIW*AVCRAW
Trigger: CCAGGCCCTGCACACAGCCAACCAGATGGTGAACAT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCAGGGTCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTTGTTGGCCAAAGAACTaGGAGGCCAGGGCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: SGSMAGCSPSLTLAHSFPCWPKN*EARALA
Trigger: AGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAACA...AGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGACCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGGGTCAGGAAGCGCTaGATGCCACAGCCTTGCATG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKWVRKR*MPQPCM
Trigger: CATGCAAGGCTGTGGCATCAAGCGCTTCCTGACCCA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp GAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACAGCAATGGTTGGTCCGCCCCTaGTCCCGGTTGTTGGTCACA +
Preference number: 5 (lower is better)
Translates to: EILSLLTARAEQPYEKQQWLVRP*SRLLVT
Trigger: TGTGACCAACAACCGGGACAAGGGGCGGACCAACCA...TTGCTGTTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACAGGAAGCCACTGTGGTaGGTCCGCCCCTTGTCCCGG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNRKPLW*VRPLSR
Trigger: CCGGGACAAGGGGCGGACCAACCACAGTGGCTTCCT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGGCTGAGCCGGCTGTaGGGGCTGATCTGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNWLSRL*GLIWSR
Trigger: CCTGCTCCAGATCAGCCCCAACAGCCGGCTCAGCCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTATGGCTGGCTGTTCTCCCAGTTTAACACTTGCCCACAGCTTCCCTCCCAGTCCATACTTGCAGTTGTaGAGCAGGGCCAGCCCAAAG +
Preference number: 5 (lower is better)
Translates to: SMAGCSPSLTLAHSFPPSPYLQL*SRASPK
Trigger: CTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATGG...ACTGGGAGGGAAGCTGTGGGCAAGTGTTAAACTGGGAGAACAGCCAGCCATAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCTCCATACTTGCAGTaGTTGAGCAGGGCCAGCCCA +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAPYLQ*LSRASP
Trigger: TGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGAGAGGCTGAGGACGTaGCCTCGTACTGATGCTCCA +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKERLRT*PRTDAP
Trigger: TGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAAGATGACACCAGCTTCTaGGAAGGAGCCCTTGTGTGG +
Preference number: 5 (lower is better)
Translates to: PLEILSLLTARAEQPYEKDDTSF*EGALVW
Trigger: CCACACAAGGGCTCCTTCCAAGAAGCTGGTGTCATC...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp CCCCTGGAAATACTCTCCCTCCTTACAGCCCGTGCAGAGCAGCCTTATGAGAAACACCTCTCAGCCTGCTaGATGGTCTCCAGCACTACT +
Preference number: 5 (lower is better)
Translates to: PLEILSLLTARAEQPYEKHLSAC*MVSSTT
Trigger: AGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGTG...TTTCTCATAAGGCTGCTCTGCACGGGCTGTAAGGAGGGAGAGTATTTCCAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTTCCTCACAGTCTCCTaGAAGGGCCAAAGCCAGGCT +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKFLTVS*KGQSQA
Trigger: AGCCTGGCTTTGGCCCTTCAAGGAGACTGTGAGGAA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGAGCGTAGCCAATACTaGGCACTGTCACCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKERSQY*ALSPGL
Trigger: TAGCCCTGGTGACAGTGCCAAGTATTGGCTACGCTC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGACCCGGATGATGCCGTaGTCCAAAGTCACAGAACCG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKTRMMP*SKVTEP
Trigger: CGGTTCTGTGACTTTGGACAACGGCATCATCCGGGT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGATGACACCAGCTTCTaGGAAGGAGCCCTTGTGTGG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKDDTSF*EGALVW
Trigger: CCACACAAGGGCTCCTTCCAAGAAGCTGGTGTCATC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCACCTCTCAGCCTGCTaGATGGTCTCCAGCACTACT +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKHLSAC*MVSSTT
Trigger: AGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGTG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CCA 90 bp AGCGGCTCACACCTGTATCAATGTGACAGTGTCCCATGGCATGGATaGTATGCTGGCTTTCACCTCCATGTTGGCCAAAGAACTTGGAGG +
Preference number: 5 (lower is better)
Translates to: SGSHLYQCDSVPWHG*YAGFHLHVGQRTWR
Trigger: CCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGGTGTGAGCCGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161663.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGGCTTTCACCTCCATGTaGGCCAAAGAACTTGGAGGC +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKAFTSM*AKELGG
Trigger: GCCTCCAAGTTCTTTGGCCAACATGGAGGTGAAAGC...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp CTCCAGTATCTGAGATGGAAGCCAGACCCTGCACACACCGGTAACCTTAGGTCTTGGTGTGGAAAGGAGTaGACCAAGTTCCAGCTCAGT +
Preference number: 5 (lower is better)
Translates to: LQYLRWKPDPAHTGNLRSWCGKE*TKFQLS
Trigger: ACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCA...AGACCTAAGGTTACCGGTGTGTGCAGGGTCTGGCTTCCATCTCAGATACTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCGCCCCTTGTCCCGGTaGTTGGTCACAGTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNRPLSR*LVTVFS
Trigger: GCTGAAGACTGTGACCAACAACCGGGACAAGGGGCG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGGTTGGTCCGCCCCTaGTCCCGGTTGTTGGTCACA +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNWLVRP*SRLLVT
Trigger: TGTGACCAACAACCGGGACAAGGGGCGGACCAACCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGGCAGCCCATCAGTGTaGCTCAGCCGCTTCAATCGG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNGSPSV*LSRFNR
Trigger: CCGATTGAAGCGGCTGAGCAACACTGATGGGCTGCC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTTCCAGGGCAGTGTGTaGATAATGAGGAGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKFQGSV*IMRRPL
Trigger: CAAGGGCCTCCTCATTATCAACACACTGCCCTGGAA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGACTGATGCTCCATACTaGCAGTTGTTGAGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKTDAPY*QLLSRA
Trigger: GGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGT...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS TCA 90 bp ACTGAAGCACAAGCAATAGGGATCTCACTTGGAAGGGAGAAAAAGTaGGCTTCAGACGGTTGTCCTGGAGGGAAAGGTGACCAGTGGGGT +
Preference number: 5 (lower is better)
Translates to: TEAQAIGISLGREKK*ASDGCPGGKGDQWG
Trigger: ACCCCACTGGTCACCTTTCCCTCCAGGACAACCGTCTGAAGCTCACTTTTTCTCCCTTCCAAGTGAGATCCCTATTGCTTGTGCTTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGGGTCAGGAAGCGCTaGATGCCACAGCCTTGCATG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNWVRKR*MPQPCM
Trigger: CATGCAAGGCTGTGGCATCAAGCGCTTCCTGACCCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGTGGTGTGGAAAGGAGTaGACCAAGTTCCAGCTCAGT +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKWCGKE*TKFQLS
Trigger: ACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCA...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCCTTGTCCCGGTTGTaGGTCACAGTCTTCAGCACC +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPLSRL*VTVFST
Trigger: GGTGCTGAAGACTGTGACCAACAACCGGGACAAGGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTTCCAGGGCAGTGTGTaGATAATGAGGAGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRFQGSV*IMRRPL
Trigger: CAAGGGCCTCCTCATTATCAACACACTGCCCTGGAA...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGCTCCATACTTGCAGTaGTTGAGCAGGGCCAGCCCA +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNAPYLQ*LSRASP
Trigger: TGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGAGAGGCTGAGGACGTaGCCTCGTACTGATGCTCCA +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNERLRT*PRTDAP
Trigger: TGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGTTGGCCAAAGAACTaGGAGGCCAGGGCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNCWPKN*EARALA
Trigger: AGCCAAAGCCCTGGCCTCCAAGTTCTTTGGCCAACA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp ATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCCCAAAGCTATCCAGTCAAGCATCTTCCCAAACTCTaGCAGAAAGAAGTTCTGGCC +
Preference number: 5 (lower is better)
Translates to: MLRAREVEMRNSQSYPVKHLPKL*QKEVLA
Trigger: GGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATG...CTTGACTGGATAGCTTTGGGAGTTCCTCATTTCCACCTCCCTAGCCCGAAGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACACCCGGATGATGCCGTaGTCCAAAGTCACAGAACCG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNTRMMP*SKVTEP
Trigger: CGGTTCTGTGACTTTGGACAACGGCATCATCCGGGT...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCCATACTTGCAGTTGTaGAGCAGGGCCAGCCCAAAG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNPYLQL*SRASPK
Trigger: CTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATGG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACGATGACACCAGCTTCTaGGAAGGAGCCCTTGTGTGG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNDDTSF*EGALVW
Trigger: CCACACAAGGGCTCCTTCCAAGAAGCTGGTGTCATC...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTCAAGTTGTTGTGCCTaGGCCACACCCAGCAACAGC +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNSSCCA*ATPSNS
Trigger: GCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp CATCTCCCTGCTGACTTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGCATCTTCCCAAACTCTaGCAGAAAGAAGTTCTGGCC +
Preference number: 5 (lower is better)
Translates to: HLPADFLSQSPLAYGHPRHLPKL*QKEVLA
Trigger: GGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATG...CCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAAGTCAGCAGGGAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTTCCAGGGCAGTGTGTaGATAATGAGGAGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNFQGSV*IMRRPL
Trigger: CAAGGGCCTCCTCATTATCAACACACTGCCCTGGAA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp TTTTTATCTCAAAGTCCCTTGGCTTATGGTCACCCGAGGTCTCCAGTATCTGAGACTGATGCTCCATACTaGCAGTTGTTGAGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: FLSQSPLAYGHPRSPVSETDAPY*QLLSRA
Trigger: GGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGT...CTCAGATACTGGAGACCTCGGGTGACCATAAGCCAAGGGACTTTGAGATAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160147.8
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACTGGTGTGGAAAGGAGTaGACCAAGTTCCAGCTCAGT +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNWCGKE*TKFQLS
Trigger: ACTGAGCTGGAACTTGGTCAACTCCTTTCCACACCA...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS-3UTR CAA 90 bp CATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAACACAAACTGTTCCAGGGCAGTGTGTaGATAATGAGGAGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: HDIPCIPVQWHIIKQHKLFQGSV*IMRRPL
Trigger: CAAGGGCCTCCTCATTATCAACACACTGCCCTGGAA...CAGTTTGTGTTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159101.2
ENSMUST00000160426.8
CDS-3UTR CAA 90 bp ATGGTAATCCATGACATCCCATGCATCCCAGTACAATGGCACATCATCAAACAAGAGCGTAGCCAATACTaGGCACTGTCACCAGGGCTA +
Preference number: 5 (lower is better)
Translates to: MVIHDIPCIPVQWHIIKQERSQY*ALSPGL
Trigger: TAGCCCTGGTGACAGTGCCAAGTATTGGCTACGCTC...TTGTTTGATGATGTGCCATTGTACTGGGATGCATGGGATGTCATGGATTACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159101.2
CDS-3UTR CAA 90 bp TCTAAGCTTTTATTGCACAAGATGCTTCGGGCTAGGGAGGTGGAAATGAGGAACCATCTTCCCAAACTCTaGCAGAAAGAAGTTCTGGCC +
Preference number: 5 (lower is better)
Translates to: SKLLLHKMLRAREVEMRNHLPKL*QKEVLA
Trigger: GGCCAGAACTTCTTTCTGCAAGAGTTTGGGAAGATG...GTTCCTCATTTCCACCTCCCTAGCCCGAAGCATCTTGTGCAATAAAAGCTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS GCA 72 bp CAGGTCCACCATGTGGGTCCGAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGCTGCACCGCCTTCTCA +
Preference number: 6 (lower is better)
Translates to: QVHHVGPKLSPT*AGLKFCCTAFS
Trigger: TGAGAAGGCGGTGCAGCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTTCGGACCCACATGGTGGACCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000160584.8
ENSMUST00000161182.8
ENSMUST00000161663.8
CDS GCA 72 bp TCCACCATCCACGTGGGTCCGAAGCTGTCGCCGACCTaGGCAGGGCTGAAGTTCTGCTGCACCGCCTTCTCA +
Preference number: 6 (lower is better)
Translates to: STIHVGPKLSPT*AGLKFCCTAFS
Trigger: TGAGAAGGCGGTGCAGCAGAACTTCAGCCCTGCGCAGGTCGGCGACAGCTTCGGACCCACGTGGATGGTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161393.8
CDS CCA 72 bp CAGTGGGGTCTCGCTGCTCCAGGAGGTCACAAAGGGTaGCCTCCTGAACAGGCAACGACGTGTGCAGCCAGC +
Preference number: 6 (lower is better)
Translates to: QWGLAAPGGHKG*PPEQATTCAAS
Trigger: GCTGGCTGCACACGTCGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCCTGGAGCAGCGAGACCCCACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CCA 72 bp AGATCGGGGACACGAACTTCTCCACCCGCTCGAAAGTaGTGCGCCAGTGCTTCAAGAACGGCGCTGCCGCCA +
Preference number: 6 (lower is better)
Translates to: RSGTRTSPPARK*CASASRTALPP
Trigger: TGGCGGCAGCGCCGTTCTTGAAGCACTGGCGCACCACTTTCGAGCGGGTGGAGAAGTTCGTGTCCCCGATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000034836.16
ENSMUST00000159130.8
ENSMUST00000160147.8
ENSMUST00000160584.8
ENSMUST00000161182.8
ENSMUST00000161393.8
ENSMUST00000161663.8
ENSMUST00000162915.8
CDS CCA 72 bp CCTTCTCATAGGGAAGCCTCTCGGGCGTCAGGAAGCTaGAGAGTGTCACCGAGCAGCTGTCCCCGAAGAGCC +
Preference number: 6 (lower is better)
Translates to: PSHREASRASGS*RVSPSSCPRRA
Trigger: GGCTCTTCGGGGACAGCTGCTCGGTGACACTCTCCAGCTTCCTGACGCCCGAGAGGCTTCCCTATGAGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000034836.16
ENSMUST00000159130.8
ENSMUST00000160147.8
ENSMUST00000160584.8
ENSMUST00000161182.8
ENSMUST00000161393.8
ENSMUST00000161663.8
ENSMUST00000162915.8
CDS TCA 72 bp TCTCGCTGCTCCAGGAGGTCACAAAGGGTGGCCTCCTaGACAGGCAACGACGTGTGCAGCCAGCAGTCCACA +
Preference number: 6 (lower is better)
Translates to: SRCSRRSQRVAS*TGNDVCSQQST
Trigger: TGTGGACTGCTGGCTGCACACGTCGTTGCCTGTTCAGGAGGCCACCCTTTGTGACCTCCTGGAGCAGCGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CCA 72 bp GCTTCAGACGGTTGTCCTGGAGGGAAAGGTGACCAGTaGGGTCTCGCTGCTCCAGGAGGTCACAAAGGGTGG +
Preference number: 6 (lower is better)
Translates to: ASDGCPGGKGDQ*GLAAPGGHKGW
Trigger: CCACCCTTTGTGACCTCCTGGAGCAGCGAGACCCCACTGGTCACCTTTCCCTCCAGGACAACCGTCTGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 72 bp TCATGGCGCCCCATGTCAGCAGTAGCGTCTGGAGCCTaGGGTGCACGCAACAGTGAGAGGCTGAGGACGTTG +
Preference number: 6 (lower is better)
Translates to: SWRPMSAVASGA*GARNSERLRTL
Trigger: CAACGTCCTCAGCCTCTCACTGTTGCGTGCACCCAAGGCTCCAGACGCTACTGCTGACATGGGGCGCCATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 90 bp CCGGGCATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTaGTGCCTTGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAG +
Preference number: 6 (lower is better)
Translates to: PGMQTRVLALDPFKL*CLGHTQQQLQVHQE
Trigger: CTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS TCA 72 bp TGTCCCCGAAGAGCCTGCCGCGAAGGTTACAGTCGGTaGAGTAGATCGGGGACACGAACTTCTCCACCCGCT +
Preference number: 6 (lower is better)
Translates to: CPRRACREGYSR*SRSGTRTSPPA
Trigger: AGCGGGTGGAGAAGTTCGTGTCCCCGATCTACTTCACCGACTGTAACCTTCGCGGCAGGCTCTTCGGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000034836.16
ENSMUST00000159130.8
ENSMUST00000160147.8
ENSMUST00000160584.8
ENSMUST00000161182.8
ENSMUST00000161393.8
ENSMUST00000161663.8
ENSMUST00000162915.8
CDS TCA 72 bp AACGACGTGTGCAGCCAGCAGTCCACATGGCTGCCATaGGCCTCGTACAGCCTTAGAACCAGTGTGCGGTGC +
Preference number: 6 (lower is better)
Translates to: NDVCSQQSTWLP*ASYSLRTSVRC
Trigger: GCACCGCACACTGGTTCTAAGGCTGTACGAGGCTCATGGCAGCCATGTGGACTGCTGGCTGCACACGTCGTT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS GCA 72 bp CAGGCAACGACGTGTGCAGCCAGCAGTCCACATGGCTaGCATGAGCCTCGTACAGCCTTAGAACCAGTGTGC +
Preference number: 6 (lower is better)
Translates to: QATTCAASSPHG*HEPRTALEPVC
Trigger: GCACACTGGTTCTAAGGCTGTACGAGGCTCATGGCAGCCATGTGGACTGCTGGCTGCACACGTCGTTGCCTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 90 bp GCGTCTGGAGCCTTGGGTGCACGCAACAGTGAGAGGCTGAGGACGTaGCCTCGTACTGATGCTCCATACTTGCAGTTGTTGAGCAGGGCC +
Preference number: 6 (lower is better)
Translates to: ASGALGARNSERLRT*PRTDAPYLQLLSRA
Trigger: GGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTCACTGTTGCGTGCACCCAAGGCTCCAGACGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 90 bp CAGGCAAACTCCTGGAGCCGGGCATGCAGACCAGGGTACTGGCTCTaGACCCATTCAAGTTGTTGTGCCTTGGCCACACCCAGCAACAGC +
Preference number: 6 (lower is better)
Translates to: QANSWSRACRPGYWL*THSSCCALATPSNS
Trigger: GCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS CAA 90 bp TGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTTGTGCCTaGGCCACACCCAGCAACAGCTCCAGGTCCACCAGGAGACTGTGG +
Preference number: 6 (lower is better)
Translates to: CRPGYWLLTHSSCCA*ATPSNSSRSTRRLW
Trigger: CCACAGTCTCCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS TCA 72 bp CCAGTGTGCGGTGCTGATGGCACCTCTCAGCCTGCTTaGTGGTCTCCAGCACTACTGCTGGTGAAGACACAG +
Preference number: 6 (lower is better)
Translates to: PVCGADGTSQPA*WSPALLLVKTQ
Trigger: CTGTGTCTTCACCAGCAGTAGTGCTGGAGACCATCAAGCAGGCTGAGAGGTGCCATCAGCACCGCACACTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS GCA 72 bp ATGCCGTTGTCCAAAGTCACAGAACCGTCAGTCTCCTaGATCACAAACACAGGCTGCTGGGGGAGGAGGGGC +
Preference number: 6 (lower is better)
Translates to: MPLSKVTEPSVS*ITNTGCWGRRG
Trigger: GCCCCTCCTCCCCCAGCAGCCTGTGTTTGTGATGCAGGAGACTGACGGTTCTGTGACTTTGGACAACGGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
ENSMUST00000161663.8
CDS CCA 72 bp GCAAACTCCTGGAGCCGGGCATGCAGACCAGGGTACTaGCTCTTGACCCATTCAAGTTGTTGTGCCTTGGCC +
Preference number: 6 (lower is better)
Translates to: ANSWSRACRPGY*LLTHSSCCALA
Trigger: GGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCATGCCCGGCTCCAGGAGTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS CAA 72 bp GGGTACTGGCTCTTGACCCATTCAAGTTGTTGTGCCTaGGCCACACCCAGCAACAGCTCCAGGTCCACCAGG +
Preference number: 6 (lower is better)
Translates to: GYWLLTHSSCCA*ATPSNSSRSTR
Trigger: CCTGGTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS TCA 72 bp AAAGTGAGCTTCAGACGGTTGTCCTGGAGGGAAAGGTaGCCAGTGGGGTCTCGCTGCTCCAGGAGGTCACAA +
Preference number: 6 (lower is better)
Translates to: KVSFRRLSWRER*PVGSRCSRRSQ
Trigger: TTGTGACCTCCTGGAGCAGCGAGACCCCACTGGTCACCTTTCCCTCCAGGACAACCGTCTGAAGCTCACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS GCA 72 bp ACCAGGGTACTGGCTCTTGACCCATTCAAGTTGTTGTaGCTTGGCCACACCCAGCAACAGCTCCAGGTCCAC +
Preference number: 6 (lower is better)
Translates to: TRVLALDPFKLL*LGHTQQQLQVH
Trigger: GTGGACCTGGAGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS CAA 72 bp CAGCCAGTTGGATCCAGTCTCACCCGGATGATGCCGTaGTCCAAAGTCACAGAACCGTCAGTCTCCTGCATC +
Preference number: 6 (lower is better)
Translates to: QPVGSSLTRMMP*SKVTEPSVSCI
Trigger: GATGCAGGAGACTGACGGTTCTGTGACTTTGGACAACGGCATCATCCGGGTGAGACTGGATCCAACTGGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
ENSMUST00000161663.8
CDS CAA 72 bp AGGCTGAGGACGTTGCCTCGTACTGATGCTCCATACTaGCAGTTGTTGAGCAGGGCCAGCCCAAAGTCACAC +
Preference number: 6 (lower is better)
Translates to: RLRTLPRTDAPY*QLLSRASPKSH
Trigger: GTGTGACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 72 bp GCCTTGGGTGCACGCAACAGTGAGAGGCTGAGGACGTaGCCTCGTACTGATGCTCCATACTTGCAGTTGTTG +
Preference number: 6 (lower is better)
Translates to: ALGARNSERLRT*PRTDAPYLQLL
Trigger: CAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTCACTGTTGCGTGCACCCAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 72 bp ATGCAGACCAGGGTACTGGCTCTTGACCCATTCAAGTaGTTGTGCCTTGGCCACACCCAGCAACAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: MQTRVLALDPFK*LCLGHTQQQLQ
Trigger: CTGGAGCTGTTGCTGGGTGTGGCCAAGGCACAACAACTTGAATGGGTCAAGAGCCAGTACCCTGGTCTGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161182.8
CDS CAA 90 bp AGGCTGAGGACGTTGCCTCGTACTGATGCTCCATACTTGCAGTTGTaGAGCAGGGCCAGCCCAAAGTCACACTCGGACAGATCTATCCAG +
Preference number: 6 (lower is better)
Translates to: RLRTLPRTDAPYLQL*SRASPKSHSDRSIQ
Trigger: CTGGATAGATCTGTCCGAGTGTGACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 90 bp GAGAGGCTGAGGACGTTGCCTCGTACTGATGCTCCATACTTGCAGTaGTTGAGCAGGGCCAGCCCAAAGTCACACTCGGACAGATCTATC +
Preference number: 6 (lower is better)
Translates to: ERLRTLPRTDAPYLQ*LSRASPKSHSDRSI
Trigger: GATAGATCTGTCCGAGTGTGACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 90 bp AACAGTGAGAGGCTGAGGACGTTGCCTCGTACTGATGCTCCATACTaGCAGTTGTTGAGCAGGGCCAGCCCAAAGTCACACTCGGACAGA +
Preference number: 6 (lower is better)
Translates to: NSERLRTLPRTDAPY*QLLSRASPKSHSDR
Trigger: TCTGTCCGAGTGTGACTTTGGGCTGGCCCTGCTCAACAACTGCAAGTATGGAGCATCAGTACGAGGCAACGTCCTCAGCCTCTCACTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
CDS CAA 90 bp GAGGTAAGACAGCCAGTTGGATCCAGTCTCACCCGGATGATGCCGTaGTCCAAAGTCACAGAACCGTCAGTCTCCTGCATCACAAACACA +
Preference number: 6 (lower is better)
Translates to: EVRQPVGSSLTRMMP*SKVTEPSVSCITNT
Trigger: TGTGTTTGTGATGCAGGAGACTGACGGTTCTGTGACTTTGGACAACGGCATCATCCGGGTGAGACTGGATCCAACTGGCTGTCTTACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000034836.16
ENSMUST00000160147.8
ENSMUST00000161182.8
ENSMUST00000161663.8
CDS CCA 72 bp AGCGGCTCACACCTGTATCAATGTGACAGTGTCCCATaGCATGGATGGTATGCTGGCTTTCACCTCCATGTT +
Preference number: 6 (lower is better)
Translates to: SGSHLYQCDSVP*HGWYAGFHLHV
Trigger: AACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGGTGTGAGCCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161663.8
CDS CCA 72 bp CACCTGTATCAATGTGACAGTGTCCCATGGCATGGATaGTATGCTGGCTTTCACCTCCATGTTGGCCAAAGA +
Preference number: 6 (lower is better)
Translates to: HLYQCDSVPWHG*YAGFHLHVGQR
Trigger: TCTTTGGCCAACATGGAGGTGAAAGCCAGCATACCATCCATGCCATGGGACACTGTCACATTGATACAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161663.8