RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAN1A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000008763

Ensembl transcript IDs: ENSMUST00000008907.14, ENSMUST00000130066.2

Found 152 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATGCTATGGAACACTCTCATACAGAAGATGCCACTGGAATCATGTaGCATGCTGTAAGGCCGGGGTGGTGCCAGGCGGAGCGTGACGCG +
Preference number: 1 (lower is better)
Translates to: NAMEHSHTEDATGIM*HAVRPGWCQAERDA
Trigger: CGCGTCACGCTCCGCCTGGCACCACCCCGGCCTTACAGCATGTCACATGATTCCAGTGGCATCTTCTGTATGAGAGTGTTCCATAGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 90 bp CTCTGCATGTATGCTCTGAGTGTTTCTGGAGTACTGAAGCTCACGTaGACACAGAGCGGAAGTGACCTGAGTAGGCAGGGCCTGGAAAGG +
Preference number: 1 (lower is better)
Translates to: LCMYALSVSGVLKLT*TQSGSDLSRQGLER
Trigger: CCTTTCCAGGCCCTGCCTACTCAGGTCACTTCCGCTCTGTGTGCACGTGAGCTTCAGTACTCCAGAAACACTCAGAGCATACATGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp CAGGGCCTGGAAAGGCGGTTCATCTATGTATGCCATGACAAAGGCTaGGACGAGCTCGCTCTGCCCTATCATTCTGAATACAGGTTTCAT +
Preference number: 1 (lower is better)
Translates to: QGLERRFIYVCHDKG*DELALPYHSEYRFH
Trigger: ATGAAACCTGTATTCAGAATGATAGGGCAGAGCGAGCTCGTCTCAGCCTTTGTCATGGCATACATAGATGAACCGCCTTTCCAGGCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp AAGCATACTGACGTACTTGTGAAAGCATTGTGGAGCATCATGAAATaGAGCGAGAAGGGGGCACGCCTCAGGGAACATACCTTCACTCAG +
Preference number: 1 (lower is better)
Translates to: KHTDVLVKALWSIMK*SEKGARLREHTFTQ
Trigger: CTGAGTGAAGGTATGTTCCCTGAGGCGTGCCCCCTTCTCGCTTCATTTCATGATGCTCCACAATGCTTTCACAAGTACGTCAGTATGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp AAGAACAGAGGCATGCTTTCCAGTGTCCCTGAACTACGAGTGACTTaGAACAGCTCCTGGTCAGATGCTGATGACTTAAATGCTCTGCAG +
Preference number: 1 (lower is better)
Translates to: KNRGMLSSVPELRVT*NSSWSDADDLNALQ
Trigger: CTGCAGAGCATTTAAGTCATCAGCATCTGACCAGGAGCTGTTTCAAGTCACTCGTAGTTCAGGGACACTGGAAAGCATGCCTCTGTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 90 bp ACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCACCTCGGAACTTaGTGTTCTGCAGTGAGACTTCTTGGTGAAGGGCTCATTCTTAGT +
Preference number: 1 (lower is better)
Translates to: TKCAAHLKKDLHLGT*CSAVRLLGEGLILS
Trigger: ACTAAGAATGAGCCCTTCACCAAGAAGTCTCACTGCAGAACAGCAAGTTCCGAGGTGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 90 bp GAATATTTAAAATGCTATGGAACACTCTCATACAGAAGATGCCACTaGAATCATGTGACATGCTGTAAGGCCGGGGTGGTGCCAGGCGGA +
Preference number: 1 (lower is better)
Translates to: EYLKCYGTLSYRRCH*NHVTCCKAGVVPGG
Trigger: TCCGCCTGGCACCACCCCGGCCTTACAGCATGTCACATGATTCCAGTGGCATCTTCTGTATGAGAGTGTTCCATAGCATTTTAAATATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp TCAGCTCCTCACTTTCCTTTGACTTGGGAGTGGGCTTGTGCTGTATaGGGAAGGCTCACTTTCTTTTTCTCTGAGAACCAAAACCTCATC +
Preference number: 1 (lower is better)
Translates to: SAPHFPLTWEWACAV*GRLTFFFSENQNLI
Trigger: GATGAGGTTTTGGTTCTCAGAGAAAAAGAAAGTGAGCCTTCCTCATACAGCACAAGCCCACTCCCAAGTCAAAGGAAAGTGAGGAGCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp GACTGCTTGTTTAAAACCTGCCAAGGGAAGCCGTGGCGCCCGAGATaGCATCATAGGGAATCAGGTAGTCAATATTCTGCAAAAAGAATG +
Preference number: 1 (lower is better)
Translates to: DCLFKTCQGKPWRPR*HHRESGSQYSAKRM
Trigger: CATTCTTTTTGCAGAATATTGACTACCTGATTCCCTATGATGTCATCTCGGGCGCCACGGCTTCCCTTGGCAGGTTTTAAACAAGCAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 90 bp AAACAACAAGACGGAGATAGGTGCCGAAAGCCTATCCTCCCATTCTaGCTCTTTCATGACAATCATATCCTAAAACCTGAAGAGACCCCG +
Preference number: 1 (lower is better)
Translates to: KQQDGDRCRKPILPF*LFHDNHILKPEETP
Trigger: CGGGGTCTCTTCAGGTTTTAGGATATGATTGTCATGAAAGAGGCAGAATGGGAGGATAGGCTTTCGGCACCTATCTCCGTCTTGTTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 90 bp ATCGATATGCAGGATTCTGTAGCATACAGGTTACTGCAAGGTGTCTaGCTGCTCTGCATGTATGCTCTGAGTGTTTCTGGAGTACTGAAG +
Preference number: 1 (lower is better)
Translates to: IDMQDSVAYRLLQGV*LLCMYALSVSGVLK
Trigger: CTTCAGTACTCCAGAAACACTCAGAGCATACATGCAGAGCAGGCAGACACCTTGCAGTAACCTGTATGCTACAGAATCCTGCATATCGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp GCACCAAGATCCAGAATTCTACTATGCTCTCATCTGAAAGCTCTGTaGGAAGAGAGTGCATACTTTCCTACATCGCAAGGTCTTGGTCCA +
Preference number: 1 (lower is better)
Translates to: APRSRILLCSHLKAL*EESAYFPTSQGLGP
Trigger: TGGACCAAGACCTTGCGATGTAGGAAAGTATGCACTCTCTTCTCACAGAGCTTTCAGATGAGAGCATAGTAGAATTCTGGATCTTGGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 90 bp AGCTCTGTGAGAAGAGAGTGCATACTTTCCTACATCGCAAGGTCTTaGTCCAAGTGTCGGTCAGCAGGTGAAGTTAGAAACGAGTATTTT +
Preference number: 1 (lower is better)
Translates to: SSVRRECILSYIARS*SKCRSAGEVRNEYF
Trigger: AAAATACTCGTTTCTAACTTCACCTGCTGACCGACACTTGGACCAAGACCTTGCGATGTAGGAAAGTATGCACTCTCTTCTCACAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 90 bp ATTCAGACAGGGCCAGTATCTGTTTGTTTCTTTCCCAAGTCTTCTTaGTACAATGTAGTTACATGTTCCTCGGTTCCTGCTCATTCGGTT +
Preference number: 1 (lower is better)
Translates to: IQTGPVSVCFFPKSS*YNVVTCSSVPAHSV
Trigger: AACCGAATGAGCAGGAACCGAGGAACATGTAACTACATTGTAGCAAGAAGACTTGGGAAAGAAACAAACAGATACTGGCCCTGTCTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp AAGATGATACCACAGACTTGTACCTTTCGTGAGTCCTGCAGTTGCTaGTTGACTGTTAAACAGTGCAAGTATAAAGCTGAGGTTGAAGGA +
Preference number: 1 (lower is better)
Translates to: KMIPQTCTFRESCSC*LTVKQCKYKAEVEG
Trigger: TCCTTCAACCTCAGCTTTATACTTGCACTGTTTAACAGTCAATCAGCAACTGCAGGACTCACGAAAGGTACAAGTCTGTGGTATCATCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 90 bp GGTTCATCTATGTATGCCATGACAAAGGCTGAGACGAGCTCGCTCTaGCCTATCATTCTGAATACAGGTTTCATTTCCAAAAATAGTGAA +
Preference number: 1 (lower is better)
Translates to: GSSMYAMTKAETSSL*PIILNTGFISKNSE
Trigger: TTCACTATTTTTGGAAATGAAACCTGTATTCAGAATGATAGGGCAGAGCGAGCTCGTCTCAGCCTTTGTCATGGCATACATAGATGAACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 90 bp AGAAAAGCTTGCTGGCTATTTATAGAGCAAACAGAATACTTGTATTaGGGTATGGAGCTAAAGAACAGAGGCATGCTTTCCAGTGTCCCT +
Preference number: 1 (lower is better)
Translates to: RKACWLFIEQTEYLY*GMELKNRGMLSSVP
Trigger: AGGGACACTGGAAAGCATGCCTCTGTTCTTTAGCTCCATACCCCAATACAAGTATTCTGTTTGCTCTATAAATAGCCAGCAAGCTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp ACATGTGCTAGAGCTCACTCTCTCCATGTTGTCTTTTATCAATACTaGACAAGTTTGAGGTGGCAAGTTTTTGGAGTACTGGCTCAATCT +
Preference number: 1 (lower is better)
Translates to: TCARAHSLHVVFYQY*TSLRWQVFGVLAQS
Trigger: AGATTGAGCCAGTACTCCAAAAACTTGCCACCTCAAACTTGTTCAGTATTGATAAAAGACAACATGGAGAGAGTGAGCTCTAGCACATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 90 bp CATGTTCCTCGGTTCCTGCTCATTCGGTTTGTTCCATTGTTAAAATaGAGGAAAGGGGCTACACAATGTGTTATATTTGATTTGAGAGCT +
Preference number: 1 (lower is better)
Translates to: HVPRFLLIRFVPLLK*RKGATQCVIFDLRA
Trigger: AGCTCTCAAATCAAATATAACACATTGTGTAGCCCCTTTCCTCCATTTTAACAATGGAACAAACCGAATGAGCAGGAACCGAGGAACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 90 bp TTATTTATAGCTGTAACAGCAGAAATGAGTAATAAGAGAGCTACATaGCTGGCAGACCTTAAAACACTCTCTGGCTGTTTACAGAAAAGC +
Preference number: 1 (lower is better)
Translates to: LFIAVTAEMSNKRAT*LADLKTLSGCLQKS
Trigger: GCTTTTCTGTAAACAGCCAGAGAGTGTTTTAAGGTCTGCCAGTCATGTAGCTCTCTTATTACTCATTTCTGCTGTTACAGCTATAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACAGAGGTTCCCCTGCTTaGTGCACTGGTCTTTGGCAC +
Preference number: 2 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYRGSPA*CTGLWH
Trigger: GTGCCAAAGACCAGTGCAGCAAGCAGGGGAACCTCT...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCAGGACTCTTGTCTCCTTaGAGCATTCCCAGGGAACCA +
Preference number: 2 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSGLLSP*SIPREP
Trigger: TGGTTCCCTGGGAATGCTCCAAGGAGACAAGAGTCC...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACTGCTGCACTGGTCTTTaGCACCTTCAGCTCCTCACT +
Preference number: 2 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYCCTGL*HLQLLT
Trigger: AGTGAGGAGCTGAAGGTGCCAAAGACCAGTGCAGCA...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 90 bp GCTGCACTGGTCTTTGGCACCTTCAGCTCCTCACTTTCCTTTGACTaGGGAGTGGGCTTGTGCTGTATGAGGAAGGCTCACTTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: AALVFGTFSSSLSFD*GVGLCCMRKAHFLF
Trigger: AAAAAGAAAGTGAGCCTTCCTCATACAGCACAAGCCCACTCCCAAGTCAAAGGAAAGTGAGGAGCTGAAGGTGCCAAAGACCAGTGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACGAGGCGCACAAAATGTaGAGCCCACCTGAAGAAAGA +
Preference number: 2 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYEAHKM*SPPEER
Trigger: TCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTC...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 90 bp CACGAATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATaGTCAGTCTTTACCGACAAATTCAGAGTGCTGACAAACACTTTG +
Preference number: 2 (lower is better)
Translates to: HECTRSENSSLKGDS*SVFTDKFRVLTNTL
Trigger: CAAAGTGTTTGTCAGCACTCTGAATTTGTCGGTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCATTCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGCTCCTCACTTTCCTTTaGCTTGGGAGTGGGCTTGTG +
Preference number: 2 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRLLTFL*LGSGLV
Trigger: CACAAGCCCACTCCCAAGTCAAAGGAAAGTGAGGAG...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGGGGCCTTCTCTCTACTaGTCTAGGATCACGTGGACA +
Preference number: 2 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRGPSLY*SRITWT
Trigger: TGTCCACGTGATCCTAGAGCAGTAGAGAGAAGGCCC...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCACTGGTAAAAATCCAATaGGGAGCTGGAAAATTCAGA +
Preference number: 2 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSLVKIQ*GAGKFR
Trigger: TCTGAATTTTCCAGCTCCTCATTGGATTTTTACCAG...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCACAAACACCAAGTATATaGACGATGGAGGAAAACACA +
Preference number: 2 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSQTPSI*TMEENT
Trigger: TGTGTTTTCCTCCATCGTTCATATACTTGGTGTTTG...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTACCCTGCTTGCTGCACTaGTCTTTGGCACCTTCAGCT +
Preference number: 2 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLPCLLH*SLAPSA
Trigger: AGCTGAAGGTGCCAAAGACCAGTGCAGCAAGCAGGG...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCAAACATAGACTCTTTGTaGACAGATCACACGTGTGAG +
Preference number: 2 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPNIDSL*TDHTCE
Trigger: CTCACACGTGTGATCTGTTCACAAAGAGTCTATGTT...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGTTCTTATCAGGAGGGTaGGGACAGTCAAGTGACAGT +
Preference number: 2 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLFLSGG*GQSSDS
Trigger: ACTGTCACTTGACTGTCCTCACCCTCCTGATAAGAA...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTCTTGCTGTTCTGCAGTaGGACTTCTTGGTGAAGGGC +
Preference number: 2 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLLAVLQ*DFLVKG
Trigger: GCCCTTCACCAAGAAGTCTCACTGCAGAACAGCAAG...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCAGGTCTTGACTTGCACTaGCAGTATAGAATAAGACAT +
Preference number: 2 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPGLDLH*QYRIRH
Trigger: ATGTCTTATTCTATACTGTCAGTGCAAGTCAAGACC...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGAGATGGCGCCTTTACTaGATGAGTGTAACAGAGGTT +
Preference number: 2 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRRWRLY*MSVTEV
Trigger: AACCTCTGTTACACTCATGCAGTAAAGGCGCCATCT...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACGATAATGGTTTTCACTaGAAGATGCTCAGTCAACTT +
Preference number: 2 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYDNGFH*KMLSQL
Trigger: AAGTTGACTGAGCATCTTCCAGTGAAAACCATTATC...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 90 bp AATTCAGACAGGGCCAGTATCTGTTTGTTTCTTTCCCAAGTCTTCTaGCTACAATGTAGTTACATGTTCCTCGGTTCCTGCTCATTCGGT +
Preference number: 2 (lower is better)
Translates to: NSDRASICLFLSQVF*LQCSYMFLGSCSFG
Trigger: ACCGAATGAGCAGGAACCGAGGAACATGTAACTACATTGTAGCAAGAAGACTTGGGAAAGAAACAAACAGATACTGGCCCTGTCTGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 90 bp CAGAAAAGCTTGCTGGCTATTTATAGAGCAAACAGAATACTTGTATaGGGGTATGGAGCTAAAGAACAGAGGCATGCTTTCCAGTGTCCC +
Preference number: 2 (lower is better)
Translates to: QKSLLAIYRANRILV*GYGAKEQRHAFQCP
Trigger: GGGACACTGGAAAGCATGCCTCTGTTCTTTAGCTCCATACCCCAATACAAGTATTCTGTTTGCTCTATAAATAGCCAGCAAGCTTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTACTAGCTCCTGTAAGGTaGTCTATGGTCTTGACTTGC +
Preference number: 2 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLLAPVR*SMVLTC
Trigger: GCAAGTCAAGACCATAGAGCACCTTACAGGAGCTAG...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGATTCTGCAAAAAGAATaGGTTCCTCTAACACCCAGG +
Preference number: 2 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRILQKE*VPLTPR
Trigger: CCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAAT...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTGTGTTATATTTGATTTaGGAGCTGCTCCACTGTGGG +
Preference number: 2 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLVLYLI*ELLHCG
Trigger: CCCACAGTGGAGCAGCTCTCAAATCAAATATAACAC...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGGAAAAATATTCTTCATaGGATCATGCCCCTCAGAGA +
Preference number: 2 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLREKYSS*DHAPQR
Trigger: TCTCTGAGGGGCATGATCTCATGAAGAATATTTTTC...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGAATACTGAACAAGTTTaGGGTGGCAAGTTTTTGGAG +
Preference number: 2 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLNTEQV*GGKFLE
Trigger: CTCCAAAAACTTGCCACCTCAAACTTGTTCAGTATT...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTCTTAAGATCTTTGTGTaGACATGTCCTGCTCACACC +
Preference number: 2 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLLKIFV*TCPAHT
Trigger: GGTGTGAGCAGGACATGTTCACACAAAGATCTTAAG...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGCTACTCAAGGGACATTaGTATGTTTTGCCTTTGCTT +
Preference number: 2 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLLLKGH*YVLPLL
Trigger: AAGCAAAGGCAAAACATAGCAATGTCCCTTGAGTAG...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTATACTATGCTCTCATCTaGAAGCTCTGTGAGAAGAGA +
Preference number: 2 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLYYALI*KLCEKR
Trigger: TCTCTTCTCACAGAGCTTTCAGATGAGAGCATAGTA...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAATTCAAGGCAACAATCTaGCACCTTCCCTCCTTCCAT +
Preference number: 2 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKFKATI*HLPSFH
Trigger: ATGGAAGGAGGGAAGGTGCCAGATTGTTGCCTTGAA...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTATACAGAAGATGCCACTaGAATCATGTGACATGCTGT +
Preference number: 2 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLYRRCH*NHVTCC
Trigger: ACAGCATGTCACATGATTCCAGTGGCATCTTCTGTA...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 90 bp GTTTACAGAAAAGCTTGCTGGCTATTTATAGAGCAAACAGAATACTaGTATTGGGGTATGGAGCTAAAGAACAGAGGCATGCTTTCCAGT +
Preference number: 2 (lower is better)
Translates to: VYRKACWLFIEQTEY*YWGMELKNRGMLSS
Trigger: ACTGGAAAGCATGCCTCTGTTCTTTAGCTCCATACCCCAATACAAGTATTCTGTTTGCTCTATAAATAGCCAGCAAGCTTTTCTGTAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAACCTATCCTCCCATTCTaGCTCTTTCATGACAATCAT +
Preference number: 2 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKPILPF*LFHDNH
Trigger: ATGATTGTCATGAAAGAGGCAGAATGGGAGGATAGG...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAACAAAGTGAAGCATACTaGCGTACTTGTGAAAGCATT +
Preference number: 2 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKQSEAY*RTCESI
Trigger: AATGCTTTCACAAGTACGTCAGTATGCTTCACTTTG...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR GCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTTATGTTTTCTCTATATaGGAGAAATACAGATGCCAC +
Preference number: 2 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLYVFSI*EKYRCH
Trigger: GTGGCATCTGTATTTCTCGCATATAGAGAAAACATA...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTAAACAAATTAAATTCTaGATTGGGGTCAGCAGCTAT +
Preference number: 2 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLKQIKF*IGVSSY
Trigger: ATAGCTGCTGACCCCAATCCAGAATTTAATTTGTTT...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR TCA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAAATTCTGCCTCTTTCATaGCAATCATATCCTAAAACC +
Preference number: 2 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKILPLS*QSYPKT
Trigger: GGTTTTAGGATATGATTGTCATGAAAGAGGCAGAAT...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp CGGGGTGGTGCCAGGCGGAGCGTGACGCGTATGACATaGTCTGTACCTGTTTGTTCCCTCATTCTCTCACGA +
Preference number: 3 (lower is better)
Translates to: RGGARRSVTRMT*SVPVCSLILSR
Trigger: TCGTGAGAGAATGAGGGAACAAACAGGTACAGAGCATGTCATACGCGTCACGCTCCGCCTGGCACCACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp CTAGGATCACGTGGACAATGCAGAGCACTGGGTAGGTaGGGGGACTCTTGTCTCCTTGGAGCATTCCCAGGG +
Preference number: 3 (lower is better)
Translates to: LGSRGQCRALGR*GDSCLLGAFPG
Trigger: CCCTGGGAATGCTCCAAGGAGACAAGAGTCCCCCCACCTACCCAGTGCTCTGCATTGTCCACGTGATCCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp GAACACTCTCATACAGAAGATGCCACTGGAATCATGTaGCATGCTGTAAGGCCGGGGTGGTGCCAGGCGGAG +
Preference number: 3 (lower is better)
Translates to: EHSHTEDATGIM*HAVRPGWCQAE
Trigger: CTCCGCCTGGCACCACCCCGGCCTTACAGCATGTCACATGATTCCAGTGGCATCTTCTGTATGAGAGTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp GAACATGTCCTGCTCACACCTGGGCCTTCTCTCTACTaGTCTAGGATCACGTGGACAATGCAGAGCACTGGG +
Preference number: 3 (lower is better)
Translates to: EHVLLTPGPSLY*SRITWTMQSTG
Trigger: CCCAGTGCTCTGCATTGTCCACGTGATCCTAGAGCAGTAGAGAGAAGGCCCAGGTGTGAGCAGGACATGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCACAGAGGTTCCCCTGCTaGCTGCACTGGTCTTTGGCA +
Preference number: 3 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSQRFPC*LHWSLA
Trigger: TGCCAAAGACCAGTGCAGCAAGCAGGGGAACCTCTG...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp GCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTaGAGAAAGACCTTCACCTCGGAACTTGCTGTTCTG +
Preference number: 3 (lower is better)
Translates to: AGVRGAQNVQPT*RKTFTSELAVL
Trigger: CAGAACAGCAAGTTCCGAGGTGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp AAAAAGGAGGAGAAGCTGAGGATCGTGACCTCAGACTaGTTGTTTAAAACCTGCCAAGGGAAGCCGTGGCGC +
Preference number: 3 (lower is better)
Translates to: KKEEKLRIVTSD*LFKTCQGKPWR
Trigger: GCGCCACGGCTTCCCTTGGCAGGTTTTAAACAAGCAGTCTGAGGTCACGATCCTCAGCTTCTCCTCCTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp GCTCTGTACCTGTTTGTTCCCTCATTCTCTCACGAATaGACTCGCTCAGAGAACTCCAGCCTGAAGGGAGAC +
Preference number: 3 (lower is better)
Translates to: ALYLFVPSFSHE*TRSENSSLKGD
Trigger: GTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp TGTCTGCCTGCTCTGCATGTATGCTCTGAGTGTTTCTaGAGTACTGAAGCTCACGTGCACACAGAGCGGAAG +
Preference number: 3 (lower is better)
Translates to: CLPALHVCSECF*STEAHVHTERK
Trigger: CTTCCGCTCTGTGTGCACGTGAGCTTCAGTACTCCAGAAACACTCAGAGCATACATGCAGAGCAGGCAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCAGCTCCTCACTTTCCTTaGACTTGGGAGTGGGCTTGT +
Preference number: 3 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSAPHFP*TWEWAC
Trigger: ACAAGCCCACTCCCAAGTCAAAGGAAAGTGAGGAGC...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp GACGTACTTGTGAAAGCATTGTGGAGCATCATGAAATaGAGCGAGAAGGGGGCACGCCTCAGGGAACATACC +
Preference number: 3 (lower is better)
Translates to: DVLVKALWSIMK*SEKGARLREHT
Trigger: GGTATGTTCCCTGAGGCGTGCCCCCTTCTCGCTTCATTTCATGATGCTCCACAATGCTTTCACAAGTACGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp CAGGTTACTGCAAGGTGTCTGCCTGCTCTGCATGTATaGTCTGAGTGTTTCTGGAGTACTGAAGCTCACGTG +
Preference number: 3 (lower is better)
Translates to: QVTARCLPALHV*SECFWSTEAHV
Trigger: CACGTGAGCTTCAGTACTCCAGAAACACTCAGAGCATACATGCAGAGCAGGCAGACACCTTGCAGTAACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp ACAGAGGCATGCTTTCCAGTGTCCCTGAACTACGAGTaGCTTGAAACAGCTCCTGGTCAGATGCTGATGACT +
Preference number: 3 (lower is better)
Translates to: TEACFPVSLNYE*LETAPGQMLMT
Trigger: AGTCATCAGCATCTGACCAGGAGCTGTTTCAAGTCACTCGTAGTTCAGGGACACTGGAAAGCATGCCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp TTTAAAACCTGCCAAGGGAAGCCGTGGCGCCCGAGATaGCATCATAGGGAATCAGGTAGTCAATATTCTGCA +
Preference number: 3 (lower is better)
Translates to: FKTCQGKPWRPR*HHRESGSQYSA
Trigger: TGCAGAATATTGACTACCTGATTCCCTATGATGTCATCTCGGGCGCCACGGCTTCCCTTGGCAGGTTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp GAAAGGCGGTTCATCTATGTATGCCATGACAAAGGCTaGGACGAGCTCGCTCTGCCCTATCATTCTGAATAC +
Preference number: 3 (lower is better)
Translates to: ERRFIYVCHDKG*DELALPYHSEY
Trigger: GTATTCAGAATGATAGGGCAGAGCGAGCTCGTCTCAGCCTTTGTCATGGCATACATAGATGAACCGCCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp CAGGATTCTGTAGCATACAGGTTACTGCAAGGTGTCTaGCTGCTCTGCATGTATGCTCTGAGTGTTTCTGGA +
Preference number: 3 (lower is better)
Translates to: QDSVAYRLLQGV*LLCMYALSVSG
Trigger: TCCAGAAACACTCAGAGCATACATGCAGAGCAGGCAGACACCTTGCAGTAACCTGTATGCTACAGAATCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp AAATGCTATGGAACACTCTCATACAGAAGATGCCACTaGAATCATGTGACATGCTGTAAGGCCGGGGTGGTG +
Preference number: 3 (lower is better)
Translates to: KCYGTLSYRRCH*NHVTCCKAGVV
Trigger: CACCACCCCGGCCTTACAGCATGTCACATGATTCCAGTGGCATCTTCTGTATGAGAGTGTTCCATAGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCAAGGTGCTCTATGGTCTaGACTTGCACTGACAGTATA +
Preference number: 3 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPRCSMV*TCTDSI
Trigger: TATACTGTCAGTGCAAGTCAAGACCATAGAGCACCT...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCAAGGGCCAGTATCTGTTaGTTTCTTTCCCAAGTCTTC +
Preference number: 3 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPRASIC*FLSQVF
Trigger: GAAGACTTGGGAAAGAAACAAACAGATACTGGCCCT...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCACCTACTCAAGGGACATaGCTATGTTTTGCCTTTGCT +
Preference number: 3 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPPTQGT*LCFAFA
Trigger: AGCAAAGGCAAAACATAGCAATGTCCCTTGAGTAGG...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp AGAAGAGAGTGCATACTTTCCTACATCGCAAGGTCTTaGTCCAAGTGTCGGTCAGCAGGTGAAGTTAGAAAC +
Preference number: 3 (lower is better)
Translates to: RRECILSYIARS*SKCRSAGEVRN
Trigger: GTTTCTAACTTCACCTGCTGACCGACACTTGGACCAAGACCTTGCGATGTAGGAAAGTATGCACTCTCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACCTTTACGTCACACATTaGCCACTGAAAATTATTCCG +
Preference number: 3 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYLYVTH*PLKIIP
Trigger: CGGAATAATTTTCAGTGGCAAATGTGTGACGTAAAG...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCACTCACTCTCTCCATGTaGTCTTTTATCAATACTGAA +
Preference number: 3 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSLTLSM*SFINTE
Trigger: TTCAGTATTGATAAAAGACAACATGGAGAGAGTGAG...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp CACTTTCCTTTGACTTGGGAGTGGGCTTGTGCTGTATaGGGAAGGCTCACTTTCTTTTTCTCTGAGAACCAA +
Preference number: 3 (lower is better)
Translates to: HFPLTWEWACAV*GRLTFFFSENQ
Trigger: TTGGTTCTCAGAGAAAAAGAAAGTGAGCCTTCCTCATACAGCACAAGCCCACTCCCAAGTCAAAGGAAAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp GACGGAGATAGGTGCCGAAAGCCTATCCTCCCATTCTaGCTCTTTCATGACAATCATATCCTAAAACCTGAA +
Preference number: 3 (lower is better)
Translates to: DGDRCRKPILPF*LFHDNHILKPE
Trigger: TTCAGGTTTTAGGATATGATTGTCATGAAAGAGGCAGAATGGGAGGATAGGCTTTCGGCACCTATCTCCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp ACTATGCTCTCATCTGAAAGCTCTGTGAGAAGAGAGTaGATACTTTCCTACATCGCAAGGTCTTGGTCCAAG +
Preference number: 3 (lower is better)
Translates to: TMLSSESSVRRE*ILSYIARSWSK
Trigger: CTTGGACCAAGACCTTGCGATGTAGGAAAGTATGCACTCTCTTCTCACAGAGCTTTCAGATGAGAGCATAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp AGAAAGACCTTCACCTCGGAACTTGCTGTTCTGCAGTaGGACTTCTTGGTGAAGGGCTCATTCTTAGTTTTA +
Preference number: 3 (lower is better)
Translates to: RKTFTSELAVLQ*DFLVKGSFLVL
Trigger: TAAAACTAAGAATGAGCCCTTCACCAAGAAGTCTCACTGCAGAACAGCAAGTTCCGAGGTGAAGGTCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp CAAAGGCTGAGACGAGCTCGCTCTGCCCTATCATTCTaGATACAGGTTTCATTTCCAAAAATAGTGAAGTGC +
Preference number: 3 (lower is better)
Translates to: QRLRRARSALSF*IQVSFPKIVKC
Trigger: GCACTTCACTATTTTTGGAAATGAAACCTGTATTCAGAATGATAGGGCAGAGCGAGCTCGTCTCAGCCTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGTGTGTTATATTTGATTaGAGAGCTGCTCCACTGTGG +
Preference number: 3 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRCVIFD*RAAPLW
Trigger: CCACAGTGGAGCAGCTCTCAAATCAAATATAACACA...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp TTTGAGGTGGCAAGTTTTTGGAGTACTGGCTCAATCTaGGGATCAGATAATGGTTTTCACTGGAAGATGCTC +
Preference number: 3 (lower is better)
Translates to: FEVASFWSTGSI*GSDNGFHWKML
Trigger: GAGCATCTTCCAGTGAAAACCATTATCTGATCCTCAGATTGAGCCAGTACTCCAAAAACTTGCCACCTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp TCCAGAATTCTACTATGCTCTCATCTGAAAGCTCTGTaGGAAGAGAGTGCATACTTTCCTACATCGCAAGGT +
Preference number: 3 (lower is better)
Translates to: SRILLCSHLKAL*EESAYFPTSQG
Trigger: ACCTTGCGATGTAGGAAAGTATGCACTCTCTTCTCACAGAGCTTTCAGATGAGAGCATAGTAGAATTCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp AGACTTGTACCTTTCGTGAGTCCTGCAGTTGCTGATTaGCTGTTAAACAGTGCAAGTATAAAGCTGAGGTTG +
Preference number: 3 (lower is better)
Translates to: RLVPFVSPAVAD*LLNSASIKLRL
Trigger: CAACCTCAGCTTTATACTTGCACTGTTTAACAGTCAATCAGCAACTGCAGGACTCACGAAAGGTACAAGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp AACTGGTTCAAAAAGCCATCTCTAGCTCCTGTAAGGTaGTCTATGGTCTTGACTTGCACTGACAGTATAGAA +
Preference number: 3 (lower is better)
Translates to: NWFKKPSLAPVR*SMVLTCTDSIE
Trigger: TTCTATACTGTCAGTGCAAGTCAAGACCATAGAGCACCTTACAGGAGCTAGAGATGGCTTTTTGAACCAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp TATTTAAAATGCTATGGAACACTCTCATACAGAAGATaGCACTGGAATCATGTGACATGCTGTAAGGCCGGG +
Preference number: 3 (lower is better)
Translates to: YLKCYGTLSYRR*HWNHVTCCKAG
Trigger: CCCGGCCTTACAGCATGTCACATGATTCCAGTGGCATCTTCTGTATGAGAGTGTTCCATAGCATTTTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp TGGAATTATGACATTAAACAACAAGACGGAGATAGGTaGCGAAAGCCTATCCTCCCATTCTGCCTCTTTCAT +
Preference number: 3 (lower is better)
Translates to: WNYDIKQQDGDR*RKPILPFCLFH
Trigger: ATGAAAGAGGCAGAATGGGAGGATAGGCTTTCGGCACCTATCTCCGTCTTGTTGTTTAATGTCATAATTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAAGACACTGGCAGTCGTTaGTACCTGACTTTAATCGCC +
Preference number: 3 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKDTGSR*YLTLIA
Trigger: GGCGATTAAAGTCAGGTACAAACGACTGCCAGTGTC...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp GCTGTAACAGCAGAAATGAGTAATAAGAGAGCTACATaGCTGGCAGACCTTAAAACACTCTCTGGCTGTTTA +
Preference number: 3 (lower is better)
Translates to: AVTAEMSNKRAT*LADLKTLSGCL
Trigger: TAAACAGCCAGAGAGTGTTTTAAGGTCTGCCAGTCATGTAGCTCTCTTATTACTCATTTCTGCTGTTACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp TGCTGGCTATTTATAGAGCAAACAGAATACTTGTATTaGGGTATGGAGCTAAAGAACAGAGGCATGCTTTCC +
Preference number: 3 (lower is better)
Translates to: CWLFIEQTEYLY*GMELKNRGMLS
Trigger: GGAAAGCATGCCTCTGTTCTTTAGCTCCATACCCCAATACAAGTATTCTGTTTGCTCTATAAATAGCCAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp CATCTAAGTTCTGTCAATCAAGAGCTCTGCTTCTCATaGTTTTCTAGTGTGCACTTCATCGATATGCAGGAT +
Preference number: 3 (lower is better)
Translates to: HLSSVNQELCFS*FSSVHFIDMQD
Trigger: ATCCTGCATATCGATGAAGTGCACACTAGAAAACCATGAGAAGCAGAGCTCTTGATTGACAGAACTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp GAGGACATGACTGGAAACCAGTTTAGGAGCAGCCAGTaGATAACAACAAAGGTTATACTTACCCACTTATTA +
Preference number: 3 (lower is better)
Translates to: EDMTGNQFRSSQ*ITTKVILTHLL
Trigger: TAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTGCTCCTAAACTGGTTTCCAGTCATGTCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTAGGAAAAGATACAGTTTaGACATGTGCTAGAGCTCAC +
Preference number: 3 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLGKDTV*TCARAH
Trigger: GTGAGCTCTAGCACATGTCAAAACTGTATCTTTTCC...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAAATGCTCTGTACCTGTTaGTTCCCTCATTCTCTCACG +
Preference number: 3 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKMLCTC*FPHSLT
Trigger: CGTGAGAGAATGAGGGAACAAACAGGTACAGAGCAT...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTAATAACCCATTTTGTGTaGCCCACAGTTTGCAAAAAG +
Preference number: 3 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLITHFV*PTVCKK
Trigger: CTTTTTGCAAACTGTGGGCAACACAAAATGGGTTAT...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR TCA 72 bp AGAGCTCACTCTCTCCATGTTGTCTTTTATCAATACTaGACAAGTTTGAGGTGGCAAGTTTTTGGAGTACTG +
Preference number: 3 (lower is better)
Translates to: RAHSLHVVFYQY*TSLRWQVFGVL
Trigger: CAGTACTCCAAAAACTTGCCACCTCAAACTTGTTCAGTATTGATAAAAGACAACATGGAGAGAGTGAGCTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp TGTTCAATAGTCCCTACTTTTATGTATTATTTAATCTaGACGACTCTGCCCAAAGCTGAAGGTGAGGTACCA +
Preference number: 3 (lower is better)
Translates to: CSIVPTFMYYLI*TTLPKAEGEVP
Trigger: TGGTACCTCACCTTCAGCTTTGGGCAGAGTCGTGCAGATTAAATAATACATAAAAGTAGGGACTATTGAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp CGGTTCCTGCTCATTCGGTTTGTTCCATTGTTAAAATaGAGGAAAGGGGCTACACAATGTGTTATATTTGAT +
Preference number: 3 (lower is better)
Translates to: RFLLIRFVPLLK*RKGATQCVIFD
Trigger: ATCAAATATAACACATTGTGTAGCCCCTTTCCTCCATTTTAACAATGGAACAAACCGAATGAGCAGGAACCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR-3UTR CAA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAAAGTATAAAGCTGAGGTaGAAGGATGCTTTGATTGCA +
Preference number: 3 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKSIKLR*KDALIA
Trigger: TGCAATCAAAGCATCCTTCAACCTCAGCTTTATACT...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR GCA 72 bp AAAAATGAACATCTAAGTTCTGTCAATCAAGAGCTCTaGTTCTCATGGTTTTCTAGTGTGCACTTCATCGAT +
Preference number: 3 (lower is better)
Translates to: KNEHLSSVNQEL*FSWFSSVHFID
Trigger: ATCGATGAAGTGCACACTAGAAAACCATGAGAAGCAGAGCTCTTGATTGACAGAACTTAGATGTTCATTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp GGTTATAGGTTAGAGGATCTTAAACAAATTAAATTCTaGATTGGGGTCAGCAGCTATGATGTAAGAGGCAAA +
Preference number: 3 (lower is better)
Translates to: GYRLEDLKQIKF*IGVSSYDVRGK
Trigger: TTTGCCTCTTACATCATAGCTGCTGACCCCAATCCAGAATTTAATTTGTTTAAGATCCTCTAACCTATAACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CCA 72 bp CAGCTTTTTGGAGAGACATCAGTTAATGAGCATTTCTaGGTTATCTTCAGGGTTTATAAACACAATGATATG +
Preference number: 3 (lower is better)
Translates to: QLFGETSVNEHF*VIFRVYKHNDM
Trigger: CATATCATTGTGTTTATAAACCCTGAAGATAACCCAGAAATGCTCATTAACTGATGTCTCTCCAAAAAGCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp TCCCACAGCCGCCTCTCCTCTGCAGACAGTCTCTGTAGTGGTCCATGTAAACAACAGGATGCTGCTGCCTaGAGACGCCCAGCCCCAGTT +
Preference number: 4 (lower is better)
Translates to: SHSRLSSADSLCSGPCKQQDAAA*RRPAPV
Trigger: AACTGGGGCTGGGCGTCTGCAGGCAGCAGCATCCTG...TTGTTTACATGGACCACTACAGAGACTGTCTGCAGAGGAGAGGCGGCTGTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACCTCAAGGTAGCCCTGTaGTGTGGGAAGGAGGGCGGC +
Preference number: 4 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYLKVAL*CGKEGG
Trigger: GCCGCCCTCCTTCCCACATCACAGGGCTACCTTGAG...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp AGGCTGGTGTTAGAGGCGCACAAAATGTGCAGCCCACCTGAAGAAAGACCTTCACTGGATCCCCACCACTaGCCCCTACACGTTGTGGGA +
Preference number: 4 (lower is better)
Translates to: RLVLEAHKMCSPPEERPSLDPHH*PLHVVG
Trigger: TCCCACAACGTGTAGGGGTCAGTGGTGGGGATCCAG...TGAAGGTCTTTCTTCAGGTGGGCTGCACATTTTGTGCGCCTCTAACACCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp GCGGAGCGTGACGCGTATGACATGCTCTGTACCTGTTaGTTCCCTCATTCTCTCACGAATGCACTCGCTCAG +
Preference number: 4 (lower is better)
Translates to: AERDAYDMLCTC*FPHSLTNALAQ
Trigger: CTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACAGAGCATGTCATACGCGTCACGCTCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACACTCCATGTGCAGGGTaGCGAACTCAGCCAGGATGC +
Preference number: 4 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYTPCAG*RTQPGC
Trigger: GCATCCTGGCTGAGTTCGGCACCCTGCACATGGAGT...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCAGCTTCCCAGCCCCACTaGCTGTATCTTGGGTCGTGG +
Preference number: 4 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPASQPH*LYLGSW
Trigger: CCACGACCCAAGATACAGGCAGTGGGGCTGGGAAGC...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp GTCTTTGGCACCTTCAGCTCCTCACTTTCCTTTGACTaGGGAGTGGGCTTGTGCTGTATGAGGAAGGCTCAC +
Preference number: 4 (lower is better)
Translates to: VFGTFSSSLSFD*GVGLCCMRKAH
Trigger: GTGAGCCTTCCTCATACAGCACAAGCCCACTCCCAAGTCAAAGGAAAGTGAGGAGCTGAAGGTGCCAAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGCGAACTCAGCCAGGATaGTGCTGCCTGCAGACGCCC +
Preference number: 4 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRRTQPG*CCLQTP
Trigger: GGGCGTCTGCAGGCAGCAGCATCCTGGCTGAGTTCG...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACTTTCAGGTTCACCATTaGCCAGGGAATCCCAGTAGG +
Preference number: 4 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYFQVHH*PGNPSR
Trigger: CCTACTGGGATTCCCTGGGCAATGGTGAACCTGAAA...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp GAGGGTGAGGACAGTCAAGTGACAGTCTTAAGATCTTaGTGTGAACATGTCCTGCTCACACCTGGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: EGEDSQVTVLRS*CEHVLLTPGPS
Trigger: AGAAGGCCCAGGTGTGAGCAGGACATGTTCACACAAAGATCTTAAGACTGTCACTTGACTGTCCTCACCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGGGGCGTATACATCCTTaGCACCAGAAAACCCACCGC +
Preference number: 4 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRGRIHP*HQKTHR
Trigger: GCGGTGGGTTTTCTGGTGTCAAGGATGTATACGCCC...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACGGGCGTTCCATTTTCTaGAGTAGTTTCCGAATGTGC +
Preference number: 4 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYGRSIF*SSFRMC
Trigger: GCACATTCGGAAACTACTGCAGAAAATGGAACGCCC...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGGATCTCCATGTCTTCTaGATCCCCACCACTGACCCC +
Preference number: 4 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRDLHVF*IPTTDP
Trigger: GGGGTCAGTGGTGGGGATCCAGAAGACATGGAGATC...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp ACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATaGTCAGTCTTTACCGACAAATTCAGAGTGCTGACA +
Preference number: 4 (lower is better)
Translates to: TRSENSSLKGDS*SVFTDKFRVLT
Trigger: TGTCAGCACTCTGAATTTGTCGGTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp TCCCACAGCCGCCTCTCCTCTGCAGACAGTCTCTGTAGTGGTCCATGTAAACAAAGTTTCTCAGCCAACTaGACTGCTTTAGTCTTGAAT +
Preference number: 4 (lower is better)
Translates to: SHSRLSSADSLCSGPCKQSFSAN*TALVLN
Trigger: ATTCAAGACTAAAGCAGTGCAGTTGGCTGAGAAACT...TTGTTTACATGGACCACTACAGAGACTGTCTGCAGAGGAGAGGCGGCTGTGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGCCCCAGGTTCAAAGGTaGTATCCTACGACCAGAGAG +
Preference number: 4 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLPQVQR*YPTTRE
Trigger: CTCTCTGGTCGTAGGATACCACCTTTGAACCTGGGG...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAAGACCCCTACACGTTGTaGGACAGGGACAGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKDPYTL*DRDRRQ
Trigger: CTGCCGCCTGTCCCTGTCCCACAACGTGTAGGGGTC...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCATTGCCGGCATCTACGTaGGGAATTAACACATCTTCT +
Preference number: 4 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPLPAST*GINTSS
Trigger: AGAAGATGTGTTAATTCCTCACGTAGATGCCGGCAA...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp GGACAAACATCACAGGAAGCTTACTGCCCATCAGGCTaGGCACACCACAACATAGATGCTAGCAAGATGATA +
Preference number: 4 (lower is better)
Translates to: GQTSQEAYCPSG*AHHNIDASKMI
Trigger: TATCATCTTGCTAGCATCTATGTTGTGGTGTGCCAAGCCTGATGGGCAGTAAGCTTCCTGTGATGTTTGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp GTAAGAATCAAAACACATCAGGTCTCTGTCCTACATGTACCAGAACTTGTTTTGCTTCTCAATAGCCAGTaGTGCTTCCCAGCCCCACTG +
Preference number: 4 (lower is better)
Translates to: VRIKTHQVSVLHVPELVLLLNSQ*CFPAPL
Trigger: CAGTGGGGCTGGGAAGCAGCACTGGCTATTGAGAAG...CAAAACAAGTTCTGGTACATGTAGGACAGAGACCTGATGTGTTTTGATTCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGCAGCTTTATCCTTTCTaGAACCATCTGCTCCAAGGG +
Preference number: 4 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLQLYPF*NHLLQG
Trigger: CCCTTGGAGCAGATGGTTCCAGAAAGGATAAAGCTG...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTACCACTGCCTGTATCTTaGGTCGTGGGTAAATCGCCA +
Preference number: 4 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLPLPVS*VVGKSP
Trigger: TGGCGATTTACCCACGACCCAAGATACAGGCAGTGG...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGGAATATTTCCTCTCCTaGCAGGTAATATGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLEYFLS*QVICSE
Trigger: CTCGCTGCATATTACCTGTCAGGAGAGGAAATATTC...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTCAGGCGGCAGTACCCTaGTCTCTTTTGTCTTCATTG +
Preference number: 4 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLQAAVP*SLLSSL
Trigger: CAATGAAGACAAAAGAGACCAGGGTACTGCCGCCTG...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGCTGTATCTTGGGTCGTaGGTAAATCGCCATAGATAC +
Preference number: 4 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLLYLGS*VNRHRY
Trigger: GTATCTATGGCGATTTACCCACGACCCAAGATACAG...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp CATGTTCCTCGGTTCCTGCTCATTCGGTTTGTTCCATaGTTAAAATGGAGGAAAGGGGCTACACAATGTGTT +
Preference number: 4 (lower is better)
Translates to: HVPRFLLIRFVP*LKWRKGATQCV
Trigger: AACACATTGTGTAGCCCCTTTCCTCCATTTTAACAATGGAACAAACCGAATGAGCAGGAACCGAGGAACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGGTCATACATCCTTCTTaGCTCGTGGTCTGTTTTATC +
Preference number: 4 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLVIHPS*LVVCFI
Trigger: GATAAAACAGACCACGAGGCAAGAAGGATGTATGAC...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGATCCTTCTTGCCTCGTaGTCTGTTTTATCTGACATC +
Preference number: 4 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRILLAS*SVLSDI
Trigger: GATGTCAGATAAAACAGACCACGAGGCAAGAAGGAT...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTAATCTTTGCCCATCCATaGATTCATCATGAAGCCCCA +
Preference number: 4 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLIFAHP*IHHEAP
Trigger: TGGGGCTTCATGATGAATTCATGGATGGGCAAAGAT...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGAATATGTTAGTGGAATaGCCTTTCCTTGCAATAGGC +
Preference number: 4 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRNMLVE*PFLAIG
Trigger: GCCTATTGCAAGGAAAGGCCATTCCACTAACATATT...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp TGGAGGAAAGGGGCTACACAATGTGTTATATTTGATTaGAGAGCTGCTCCACTGTGGGAGAAAACAAATGTA +
Preference number: 4 (lower is better)
Translates to: WRKGATQCVIFD*RAAPLWEKTNV
Trigger: TACATTTGTTTTCTCCCACAGTGGAGCAGCTCTCAAATCAAATATAACACATTGTGTAGCCCCTTTCCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTTTGTTTTTCTCTGTCTaGATTTCTGCACGGATTTCC +
Preference number: 4 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLLFFSV*ISARIS
Trigger: GGAAATCCGTGCAGAAATTCAGACAGAGAAAAACAA...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR GCA 90 bp GGTAGTCAATATTCTGCAAAAAGAATGCGTTCCTCTAACACCCAGGCTTTCCTGCTCTTTTGTCTTCATTaGTTGGGCTACTTTGTTTTT +
Preference number: 4 (lower is better)
Translates to: GSQYSAKRMRSSNTQAFLLFCLH*LGYFVF
Trigger: AAAAACAAAGTAGCCCAAGCAATGAAGACAAAAGAG...CAGGAAAGCCTGGGTGTTAGAGGAACGCATTCTTTTTGCAGAATATTGACTACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
3UTR CAA 72 bp TTGCTGGCTATTTATAGAGCAAACAGAATACTTGTATaGGGGTATGGAGCTAAAGAACAGAGGCATGCTTTC +
Preference number: 4 (lower is better)
Translates to: LLAIYRANRILV*GYGAKEQRHAF
Trigger: GAAAGCATGCCTCTGTTCTTTAGCTCCATACCCCAATACAAGTATTCTGTTTGCTCTATAAATAGCCAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTAGTTTCCGAATGTGCATaGCCTTATTATAGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLVSECA*PYYSKS
Trigger: TGACTTACTATAATAAGGTCATGCACATTCGGAAAC...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR TCA 90 bp GTAAGAATCAAAACACATCAGGTCTCTGTCCTACATGTACCAGAACTTGTTTTGAAAGACAGACACTTCTaGATTCACACTGAAATCAAG +
Preference number: 4 (lower is better)
Translates to: VRIKTHQVSVLHVPELVLKDRHF*IHTEIK
Trigger: CTTGATTTCAGTGTGAATTCAGAAGTGTCTGTCTTT...CAAAACAAGTTCTGGTACATGTAGGACAGAGACCTGATGTGTTTTGATTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CCA 90 bp AAAGCTGAGGTTGAAGGATGCTTTGATTGCAAAGTGAAGCATACTGACGTACTTTTTGTCTTCATTGCTTaGGCTACTTTGTTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: KAEVEGCFDCKVKHTDVLFVFIA*ATLFFS
Trigger: AGAGAAAAACAAAGTAGCCCAAGCAATGAAGACAAA...AAGTACGTCAGTATGCTTCACTTTGCAATCAAAGCATCCTTCAACCTCAGCTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CAA 90 bp TGGTTTTCTAGTGTGCACTTCATCGATATGCAGGATTCTGTAGCATACAGGTTAGGGGCGTATACATCCTaGACACCAGAAAACCCACCG +
Preference number: 5 (lower is better)
Translates to: WFSSVHFIDMQDSVAYRLGAYTS*TPENPP
Trigger: CGGTGGGTTTTCTGGTGTCAAGGATGTATACGCCCC...TAACCTGTATGCTACAGAATCCTGCATATCGATGAAGTGCACACTAGAAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CAA 90 bp TGTACCTGTTTGTTCCCTCATTCTCTCACGAATGCACTCGCTCAGAGAACTCCATGCACTGCTTTAGTCTaGAATATTTCCTCTCCTGAC +
Preference number: 5 (lower is better)
Translates to: CTCLFPHSLTNALAQRTPCTALV*NISSPD
Trigger: GTCAGGAGAGGAAATATTCAAGACTAAAGCAGTGCA...TGGAGTTCTCTGAGCGAGTGCATTCGTGAGAGAATGAGGGAACAAACAGGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CAA 90 bp ATGCACTCGCTCAGAGAACTCCAGCCTGAAGGGAGACTCATTGTCAGTCTTTACTTTTGTCTTCATTGCTaGGGCTACTTTGTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: MHSLRELQPEGRLIVSLYFCLHC*GYFVFL
Trigger: GAGAAAAACAAAGTAGCCCAAGCAATGAAGACAAAA...GTAAAGACTGACAATGAGTCTCCCTTCAGGCTGGAGTTCTCTGAGCGAGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CAA 90 bp AGAGTGCTGACAAACACTTTGGTAATGAAGAGCAAAAAGGAGGAGAAGCTGAGGCGTCATACATCCTTCTaGCCTCGTGGTCTGTTTTAT +
Preference number: 5 (lower is better)
Translates to: RVLTNTLVMKSKKEEKLRRHTSF*PRGLFY
Trigger: ATAAAACAGACCACGAGGCAAGAAGGATGTATGACG...CCTCAGCTTCTCCTCCTTTTTGCTCTTCATTACCAAAGTGTTTGTCAGCACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CAA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAACCCAGCGCCCTGTTCTaGGGTTTAAATAATTTGGAT +
Preference number: 5 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKPSALF*GLNNLD
Trigger: ATCCAAATTATTTAAACCCAAGAACAGGGCGCTGGG...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS-3UTR CAA 90 bp CAGCCAGTGGATAACAACAAAGGTTATACTTACCCACTTATTAGTTTAGGGAAATTCTTCAATCCATCTTaGCCCATCCATGAATTCATC +
Preference number: 5 (lower is better)
Translates to: QPVDNNKGYTYPLISLGKFFNPS*PIHEFI
Trigger: GATGAATTCATGGATGGGCAAAGATGGATTGAAGAA...TTTCCCTAAACTAATAAGTGGGTAAGTATAACCTTTGTTGTTATCCACTGGCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS CCA 72 bp GTCTTCTGGATCCCCACCACTGACCCCTACACGTTGTaGGACAGGGACAGGCGGCAGTACCCTGGTCTCTTT +
Preference number: 6 (lower is better)
Translates to: VFWIPTTDPYTL*DRDRRQYPGLF
Trigger: AAAGAGACCAGGGTACTGCCGCCTGTCCCTGTCCCACAACGTGTAGGGGTCAGTGGTGGGGATCCAGAAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000008907.14
ENSMUST00000130066.2
CDS GCA 72 bp AGAGTGCTGTTGGCTAAGCGCAACACCGGCAGAGGGTaGGCCTCTGTGTTAAACACCCAGTGGTCTAAAGGT +
Preference number: 6 (lower is better)
Translates to: RVLLAKRNTGRG*ASVLNTQWSKG
Trigger: ACCTTTAGACCACTGGGTGTTTAACACAGAGGCGCACCCTCTGCCGGTGTTGCGCTTAGCCAACAGCACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000008907.14
CDS CCA 72 bp CTACACGTTGTGGGACAGGGACAGGCGGCAGTACCCTaGTCTCTTTTGTCTTCATTGCTTGGGCTACTTTGT +
Preference number: 6 (lower is better)
Translates to: LHVVGQGQAAVP*SLLSSLLGLLC
Trigger: ACAAAGTAGCCCAAGCAATGAAGACAAAAGAGACCAGGGTACTGCCGCCTGTCCCTGTCCCACAACGTGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000008907.14
ENSMUST00000130066.2
CDS CAA 72 bp GTGGGACAGGGACAGGCGGCAGTACCCTGGTCTCTTTaGTCTTCATTGCTTGGGCTACTTTGTTTTTCTCTG +
Preference number: 6 (lower is better)
Translates to: VGQGQAAVPWSL*SSLLGLLCFSL
Trigger: CAGAGAAAAACAAAGTAGCCCAAGCAATGAAGACAAAAGAGACCAGGGTACTGCCGCCTGTCCCTGTCCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000008907.14
ENSMUST00000130066.2