Pregenerated sensors for MAN1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003746Ensembl transcript IDs: ENSMUST00000003843.16, ENSMUST00000105470.9, ENSMUST00000218317.2, ENSMUST00000220088.2
Found 165 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCGAGTTCAAGGTAGTGTTGGGCCCGGGCTTCCGGAGCTCCATCTaGCCCAAGTGCAAACATGCCTCCTGCAAAGCACGTCAGGTGGCC | + |
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Preference number: 1 (lower is better) Translates to: SEFKVVLGPGFRSSI*PKCKHASCKARQVA Trigger: GGCCACCTGACGTGCTTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGAGCTCCGGAAGCCCGGGCCCAACACTACCTTGAACTCGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR TCA 90 bp | AGAGCCTCCACGGCTTCCCAGGCCCAGGTCCTGTACTTGGGGTCGTaGGTCAGTCGCCACATGTACATGTATGTCTCGATGACCTCGGGC | + |
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Preference number: 1 (lower is better) Translates to: RASTASQAQVLYLGS*VSRHMYMYVSMTSG Trigger: GCCCGAGGTCATCGAGACATACATGTACATGTGGCGACTGACTCACGACCCCAAGTACAGGACCTGGGCCTGGGAAGCCGTGGAGGCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR GCA 90 bp | AAGGTAGTGTTGGGCCCGGGCTTCCGGAGCTCCATCTGCCCCAAGTaGAAACATGCCTCCTGCAAAGCACGTCAGGTGGCCCATCTTGTG | + |
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Preference number: 1 (lower is better) Translates to: KVVLGPGFRSSICPK*KHASCKARQVAHLV Trigger: CACAAGATGGGCCACCTGACGTGCTTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGAGCTCCGGAAGCCCGGGCCCAACACTACCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR GCA 90 bp | GGGCAATGTAAACATCCCGTAAGCCTGAGTAGCCTCCGTTCACTCTaGAGTGACTTTCTAGAGCCTCCACGGCTTCCCAGGCCCAGGTCC | + |
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Preference number: 1 (lower is better) Translates to: GQCKHPVSLSSLRSL*SDFLEPPRLPRPRS Trigger: GGACCTGGGCCTGGGAAGCCGTGGAGGCTCTAGAAAGTCACTGCAGAGTGAACGGAGGCTACTCAGGCTTACGGGATGTTTACATTGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR GCA 90 bp | ATGAAAGTGAGGAAACATGAACATAATCACCCAATAAGAAGATACTaGACTTGTGAAGAGATGAGGCCAGTGTCGCCAGCTCTTCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: MKVRKHEHNHPIRRY*TCEEMRPVSPALLG Trigger: TCCCAGAAGAGCTGGCGACACTGGCCTCATCTCTTCACAAGTGCAGTATCTTCTTATTGGGTGATTATGTTCATGTTTCCTCACTTTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR GCA 90 bp | AAGGTCATCATCGGAAAATATCAAGTACAAATACTTCAGTGTCTCTaGCAGGAAGAAACTTTGCTGGACATCGTCATAACTCTCACGGGC | + |
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Preference number: 1 (lower is better) Translates to: KVIIGKYQVQILQCL*QEETLLDIVITLTG Trigger: GCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTTCTTCCTGGCAGAGACACTGAAGTATTTGTACTTGATATTTTCCGATGATGACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR CCA 90 bp | TTAAAGAGACCCAAAGAGGAAATGTATACCCATGAGCTAGTCATATaGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATT | + |
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Preference number: 1 (lower is better) Translates to: LKRPKEEMYTHELVI*NSPSLFREEILEWI Trigger: AATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGACTAGCTCATGGGTATACATTTCCTCTTTGGGTCTCTTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR GCA 90 bp | ACAAGTGCGGGCAATTTCAGCTCCGAGTTCAAGGTAGTGTTGGGCCCGGGCTTCTCCATCTGCCCCAAGTaGAAACATGCCTCCTGCAAA | + |
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Preference number: 2 (lower is better) Translates to: TSAGNFSSEFKVVLGPGFSICPK*KHASCK Trigger: TTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGA...GAAGCCCGGGCCCAACACTACCTTGAACTCGGAGCTGAAATTGCCCGCACTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR GCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATCTCAGGAGCTCCCCTTaGTGTGTCGTGGGTGATGGG | + |
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Preference number: 2 (lower is better) Translates to: VIWNSPSLFREEILEWIHLRSSP*CVVGDG Trigger: CCCATCACCCACGACACAGCAAGGGGAGCTCCTGAG...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR GCA 90 bp | CAGGAAGAAACTTTGCTGGACATCGTCATAACTCTCACGGGCAATGTAAACATCAGCCTCCGTTCACTCTaGAGTGACTTTCTAGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: QEETLLDIVITLTGNVNISLRSL*SDFLEP Trigger: AGGCTCTAGAAAGTCACTGCAGAGTGAACGGAGGCT...GATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTTCTTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR TCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATGCACTTGTGAAGAGATaGGGCCAGTGTCGCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: VIWNSPSLFREEILEWIHALVKR*GQCRQL Trigger: GAGCTGGCGACACTGGCCTCATCTCTTCACAAGTGC...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR TCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTTTGCAGATCAAATTATaGGGGAGTGGATCCATCCCT | + |
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Preference number: 2 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPLQIKL*GSGSIP Trigger: AGGGATGGATCCACTCCCTCATAATTTGATCTGCAA...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR CCA 90 bp | CTTTTCATTTTGCCTCGTGGCAATAGCTTCCACACCGCCATCAAATCGAAACGCTCAAGTGAGTCTCGATaGCCTGAACAGCATCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: LFILPRGNSFHTAIKSKRSSESR*PEQHQN Trigger: ATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGA...GCGTTTCGATTTGATGGCGGTGTGGAAGCTATTGCCACGAGGCAAAATGAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR TCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTTTAACATTTTACCTCTaGGCTCTAGGGAAGGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPLTFYL*ALGKEG Trigger: TCCTTCCTTCCCTAGAGCTCAGAGGTAAAATGTTAA...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR GCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTGTGCAATGCATCCTTTaGTTAAAGAGACCCAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPVQCIL*LKRPKE Trigger: CTCTTTGGGTCTCTTTAAGCAAAGGATGCATTGCAC...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR CAA 90 bp | AAATATCAAGTACAAATACTTCAGTGTCTCTGCCAGGAAGAAACTTaGCTGGACATCGTCATAACTCTCACGGGCAATGTAAACATCCCG | + |
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Preference number: 2 (lower is better) Translates to: KYQVQILQCLCQEET*LDIVITLTGNVNIP Trigger: CGGGATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTTCTTCCTGGCAGAGACACTGAAGTATTTGTACTTGATATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR TCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTACTTTCTCCTTTAGCTaGATAGGAGTAGGTAAATCA | + |
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Preference number: 2 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPTFSFS*IGVGKS Trigger: TGATTTACCTACTCCTATTCAGCTAAAGGAGAAAGT...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR CCA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCACCAGCTCTTCTGGGATaGCTTTCTCATCTGAATCAC | + |
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Preference number: 2 (lower is better) Translates to: RAKAENEMKVRKHEHNHPPALLG*LSHLNH Trigger: GTGATTCAGATGAGAAAGCCATCCCAGAAGAGCTGG...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR CCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTAGGTTGAAATTGAGGTaGTTCTTGTCTTTGTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPRLKLR*FLSLSF Trigger: GAAAGACAAAGACAAGAACCACCTCAATTTCAACCT...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR TCA 90 bp | AAACTGAAGTTCAATGATGAGCTACACCTGGGAAGAGACCTTTTCAGATCTGAAAAATTAAGCAGTATGTaGTACAGAGATGACACAGGG | + |
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Preference number: 2 (lower is better) Translates to: KLKFNDELHLGRDLFRSEKLSSM*YRDDTG Trigger: CCCTGTGTCATCTCTGTATCACATACTGCTTAATTT...TTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR CCA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCATGTAAGACCTGTTTCTaGTGGACAGACAAACCAGAT | + |
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Preference number: 2 (lower is better) Translates to: RAKAENEMKVRKHEHNHPCKTCF*WTDKPD Trigger: ATCTGGTTTGTCTGTCCACCAGAAACAGGTCTTACA...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR GCA 72 bp | TTGGGCCCGGGCTTCCGGAGCTCCATCTGCCCCAAGTaGAAACATGCCTCCTGCAAAGCACGTCAGGTGGCC | + |
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Preference number: 3 (lower is better) Translates to: LGPGFRSSICPK*KHASCKARQVA Trigger: GGCCACCTGACGTGCTTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGAGCTCCGGAAGCCCGGGCCCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR TCA 72 bp | ACGGCTTCCCAGGCCCAGGTCCTGTACTTGGGGTCGTaGGTCAGTCGCCACATGTACATGTATGTCTCGATG | + |
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Preference number: 3 (lower is better) Translates to: TASQAQVLYLGS*VSRHMYMYVSM Trigger: CATCGAGACATACATGTACATGTGGCGACTGACTCACGACCCCAAGTACAGGACCTGGGCCTGGGAAGCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR GCA 72 bp | TCCACTCTGCGATGTACGTTAGTCCCCCACTTGACTTaGGGATCAAGTGAGTCTCGATGGCCTGAACAGCAT | + |
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Preference number: 3 (lower is better) Translates to: STLRCTLVPHLT*GSSESRWPEQH Trigger: ATGCTGTTCAGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGTACATCGCAGAGTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR CAA 90 bp | CTTTTCATTTTGCCTCGTGGCAATAGCTTCCACACCGCCATCAAATCGAAACGCACGTTAGTCCCCCACTaGACTTGCGGATCAAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: LFILPRGNSFHTAIKSKRTLVPH*TCGSSE Trigger: CTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGT...GCGTTTCGATTTGATGGCGGTGTGGAAGCTATTGCCACGAGGCAAAATGAAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR CCA 72 bp | ATTCTGCATAACTCAGGAGCTCCCCTTGCTGTGTCGTaGGTGATGGGAGAAATTAAGCAGTATGTGATACAG | + |
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Preference number: 3 (lower is better) Translates to: ILHNSGAPLAVS*VMGEIKQYVIQ Trigger: CTGTATCACATACTGCTTAATTTCTCCCATCACCCACGACACAGCAAGGGGAGCTCCTGAGTTATGCAGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR GCA 72 bp | AGGAAACATGAACATAATCACCCAATAAGAAGATACTaGACTTGTGAAGAGATGAGGCCAGTGTCGCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: RKHEHNHPIRRY*TCEEMRPVSPA Trigger: AGCTGGCGACACTGGCCTCATCTCTTCACAAGTGCAGTATCTTCTTATTGGGTGATTATGTTCATGTTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR-3UTR CAA 90 bp | AAACGCTTCCGGTCCCAACTTCACATATGTACGATTATAAGATTCATGACAAGTGCTTCGAGATCTGTCTaGTCAGACATTAACCACGCC | + |
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Preference number: 3 (lower is better) Translates to: KRFRSQLHICTIIRFMTSASRSV*SDINHA Trigger: GGCGTGGTTAATGTCTGACAAGACAGATCTCGAAGC...ACTTGTCATGAATCTTATAATCGTACATATGTGAAGTTGGGACCGGAAGCGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCGGTCCCAACTTCACATATGTACGATTATAAGATTCATGACAAGTGCGGGCTCAAAATACATCTTCTaGGCTTCGAGATCTGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: FRSQLHICTIIRFMTSAGSKYIF*ASRSVL Trigger: CAAGACAGATCTCGAAGCCAAGAAGATGTATTTTGA...GCCCGCACTTGTCATGAATCTTATAATCGTACATATGTGAAGTTGGGACCGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAAACCGACACATGATGTaGACCCCACTGTCCACTACT | + |
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Preference number: 3 (lower is better) Translates to: DCKTIVELRRIIDVCQSINRHMM*TPLSTT Trigger: AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| 3UTR CCA 72 bp | CCCAAAGAGGAAATGTATACCCATGAGCTAGTCATATaGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTG | + |
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Preference number: 3 (lower is better) Translates to: PKEEMYTHELVI*NSPSLFREEIL Trigger: CAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGACTAGCTCATGGGTATACATTTCCTCTTTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| CDS-3UTR GCA 90 bp | GCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACTCGGCCAGGATACTGCTaGCTCCAGAGGCCCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: AVSKSSNRHMMLTPLSTTRPGYC*LQRPRA Trigger: GGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCG...AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR GCA 90 bp | ACAAGTGCGGGCAATTTCAGCTCCGAGTTCAAGGTAGTGTTGGGCCCGGGCTTCATTCGGCCAGGATACTaGTGCCTCCAGAGGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TSAGNFSSEFKVVLGPGFIRPGY*CLQRPR Trigger: CCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCGAAT...GAAGCCCGGGCCCAACACTACCTTGAACTCGGAGCTGAAATTGCCCGCACTTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR TCA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCACGCCCCCAGGGCTACTaGAGAGCGGCAACAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPRPQGY*RAATGP Trigger: GGGGCCTGTTGCCGCTCTTCAGTAGCCCTGGGGGCG...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| CDS-3UTR TCA 90 bp | GCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACTGGAACAGGACCCCGCTaGGCAGCTTGGAGGAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: AVSKSSNRHMMLTPLSTTGTGPR*AAWRSQ Trigger: CTGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCC...AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR GCA 90 bp | GCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACTTCCTCCGGCAGCTTCTaGAGGGTCTCCTTGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: AVSKSSNRHMMLTPLSTTSSGSF*RVSLAS Trigger: GGAAGCCAAGGAGACCCTGCAGAAGCTGCCGGAGGA...AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR CCA 90 bp | AGCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACAAGGCAGGGTTGGAGTaGAACAGGACCCCGCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SCLQVLQPTHDVDPTVHYKAGLE*NRTPLS Trigger: GCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTT...GTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR CCA 90 bp | CCTTCCACTCTGCGATGTACGTTAGTCCCCCACTTGACTTGCGGATCAAGTGAGCTGAGAGCCCGCTCGTaGTTTTCGCGGATCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: PSTLRCTLVPHLTCGSSELRARS*FSRILA Trigger: AGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAG...CTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGTACATCGCAGAGTGGAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR TCA 90 bp | CAGGAAGAAACTTTGCTGGACATCGTCATAACTCTCACGGGCAATGTAAACATCCGCCCCCAGGGCTACTaGAGAGCGGCAACAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: QEETLLDIVITLTGNVNIRPQGY*RAATGP Trigger: GGGGCCTGTTGCCGCTCTTCAGTAGCCCTGGGGGCG...GATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTTCTTCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR TCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTGCACGAACTTCTCGGTaGGGCGGAAGGCAGCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPARTSR*GGRQRG Trigger: GCCCCGCTGCCTTCCGCCTCACCGAGAAGTTCGTGC...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| CDS-3UTR CCA 90 bp | AGGCCAGTGTCGCCAGCTCTTCTGGGATGGCTTTCTCATCTGAATCACAATGAGCTGAGAGCCCGCTCGTaGTTTTCGCGGATCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: RPVSPALLGWLSHLNHNELRARS*FSRILA Trigger: AGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAG...CTCATTGTGATTCAGATGAGAAAGCCATCCCAGAAGAGCTGGCGACACTGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| 3UTR CAA 72 bp | CCCCCTTCCACTCTGCGATGTACGTTAGTCCCCCACTaGACTTGCGGATCAAGTGAGTCTCGATGGCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: PPSTLRCTLVPH*TCGSSESRWPE Trigger: TTCAGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGTACATCGCAGAGTGGAAGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAATTCGGCCAGGATACTaGTGCCTCCAGAGGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPIRPGY*CLQRPR Trigger: CCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCGAAT...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| CDS-3UTR GCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATCCGAGCCCGGGCTTGTaGTCCGCCGGCGGCTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: VIWNSPSLFREEILEWIHPSPGL*SAGGCK Trigger: CTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGG...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCATCCTTGTCACGCAGCTaGTCCTGGGCCACCTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPSLSRS*SWATFS Trigger: GGAAAAGGTGGCCCAGGACCAGCTGCGTGACAAGGA...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
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| CDS-3UTR CCA 90 bp | TTCCGGTCCCAACTTCACATATGTACGATTATAAGATTCATGACAAGTGCGGGCTCTTCTCACGGATGGTaGCGTCAGCGGGCTCCCGGT | + |
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Preference number: 4 (lower is better) Translates to: FRSQLHICTIIRFMTSAGSSHGW*RQRAPG Trigger: ACCGGGAGCCCGCTGACGCCACCATCCGTGAGAAGA...GCCCGCACTTGTCATGAATCTTATAATCGTACATATGTGAAGTTGGGACCGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
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| CDS-3UTR GCA 90 bp | CCCCACTTGACTTGCGGATCAAGTGAGTCTCGATGGCCTGAACAGCATCAAAATAGGCAGGAAGAAGATTaGCCCGAAGCAGAGCGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: PHLTCGSSESRWPEQHQNRQEED*PEAERD Trigger: ATCACGCTCTGCTTCGGGGCAATCTTCTTCCTGCCT...ATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACCGAGCCCGGGCTTGTaGTCCGCCGGCGGCTGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIPSPGL*SAGGCK Trigger: CTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCACGGCCAGGATACTGCTaGCTCCAGAGGCCCAGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: RAKAENEMKVRKHEHNHPRPGYC*LQRPRA Trigger: GGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCG...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACGCCCCCAGGGCTACTaGAGAGCGGCAACAGGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIRPQGY*RAATGP Trigger: GGGGCCTGTTGCCGCTCTTCAGTAGCCCTGGGGGCG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | GCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACTCATCTCTTTGATCTTTaGCCTCTTCTCACGGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: AVSKSSNRHMMLTPLSTTHLFDL*PLLTDG Trigger: ACCATCCGTGAGAAGAGGGCAAAGATCAAAGAGATG...AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGCACGAACTTCTCGGTaGGGCGGAAGGCAGCGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIARTSR*GGRQRG Trigger: GCCCCGCTGCCTTCCGCCTCACCGAGAAGTTCGTGC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR TCA 90 bp | GCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACTCACGATTTAGCTTCTTaGAATTCAGTCTTCATGCCC | + |
|
Preference number: 4 (lower is better) Translates to: AVSKSSNRHMMLTPLSTTHDLAS*NSVFMP Trigger: GGGCATGAAGACTGAATTTCAAGAAGCTAAATCGTG...AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR TCA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAACATGTATGTCTCGATaGCCTCGGGCCGTAAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPTCMSR*PRAVRC Trigger: ACATCTTACGGCCCGAGGTCATCGAGACATACATGT...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACGGCCAGGATACTGCTaGCTCCAGAGGCCCAGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIRPGYC*LQRPRA Trigger: GGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CCA 90 bp | AAACTGAAGTTCAATGATGAGCTACACCTGGGAAGAGACCTTTTCAGATCTGAAAAGGCAGGGTTGGAGTaGAACAGGACCCCGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: KLKFNDELHLGRDLFRSEKAGLE*NRTPLS Trigger: GCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTT...TTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CCA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCATCTTCTCACGGATGGTaGCGTCAGCGGGCTCCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: RAKAENEMKVRKHEHNHPSSHGW*RQRAPG Trigger: ACCGGGAGCCCGCTGACGCCACCATCCGTGAGAAGA...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR TCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATGGAACAGGACCCCGCTaGGCAGCTTGGAGGAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: VIWNSPSLFREEILEWIHGTGPR*AAWRSQ Trigger: CTGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCC...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR TCA 90 bp | AAACTGAAGTTCAATGATGAGCTACACCTGGGAAGAGACCTTTTCAGATCTGAATCTCCTTGGCTTCCCTaGGAGCCCGCTCGTGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: KLKFNDELHLGRDLFRSESPWLP*EPARGF Trigger: AAAACCACGAGCGGGCTCTCAGGGAAGCCAAGGAGA...TTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCATCCTCCGGCAGCTTCTaGAGGGTCTCCTTGGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RAKAENEMKVRKHEHNHPSSGSF*RVSLAS Trigger: GGAAGCCAAGGAGACCCTGCAGAAGCTGCCGGAGGA...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAGATTAACTCCATCTGCCCCAAGTaGAAACATGCCTCCTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: EAVTVVRPVSGGQTNQINSICPK*KHASCK Trigger: TTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGA...GTTAATCTGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CCA 90 bp | AGGCCAGTGTCGCCAGCTCTTCTGGGATGGCTTTCTCATCTGAATCACAATGAGTCAAGTGAGTCTCGATaGCCTGAACAGCATCAAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RPVSPALLGWLSHLNHNESSESR*PEQHQN Trigger: ATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGA...CTCATTGTGATTCAGATGAGAAAGCCATCCCAGAAGAGCTGGCGACACTGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGGAACAGGACCCCGCTaGGCAGCTTGGAGGAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIGTGPR*AAWRSQ Trigger: CTGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCTTCTCACGGATGGTaGCGTCAGCGGGCTCCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISSHGW*RQRAPG Trigger: ACCGGGAGCCCGCTGACGCCACCATCCGTGAGAAGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | AAACTGAAGTTCAATGATGAGCTACACCTGGGAAGAGACCTTTTCAGATCTGAAAGGCAGGAAGAAGATTaGCCCGAAGCAGAGCGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: KLKFNDELHLGRDLFRSERQEED*PEAERD Trigger: ATCACGCTCTGCTTCGGGGCAATCTTCTTCCTGCCT...TTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCCTCCGGCAGCTTCTaGAGGGTCTCCTTGGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISSGSF*RVSLAS Trigger: GGAAGCCAAGGAGACCCTGCAGAAGCTGCCGGAGGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAATTCGGCCAGGATACTaGTGCCTCCAGAGGCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIIRPGY*CLQRPR Trigger: CCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCGAAT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAAAGGCAGGGTTGGAGTaGAACAGGACCCCGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIKAGLE*NRTPLS Trigger: GCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACTGAGAGCCCGCTCGTaGTTTTCGCGGATCCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSILRARS*FSRILA Trigger: AGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCTCCTTGGCTTCCCTaGGAGCCCGCTCGTGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISPWLP*EPARGF Trigger: AAAACCACGAGCGGGCTCTCAGGGAAGCCAAGGAGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR TCA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTCACGATTTAGCTTCTTaGAATTCAGTCTTCATGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPHDLAS*NSVFMP Trigger: GGGCATGAAGACTGAATTTCAAGAAGCTAAATCGTG...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAGATTAACATACTTCAGTGTCTCTaGCAGGAAGAAACTTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: EAVTVVRPVSGGQTNQINILQCL*QEETLL Trigger: CAGCAAAGTTTCTTCCTGGCAGAGACACTGAAGTAT...GTTAATCTGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCCTTGTCACGCAGCTaGTCCTGGGCCACCTTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISLSRS*SWATFS Trigger: GGAAAAGGTGGCCCAGGACCAGCTGCGTGACAAGGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CCA 90 bp | GGCATGTTAGAAGTTAGGTCTTTTCTCTTTCAAAATTGTAATTGGGTAACCTGGGCAAAGCACGTCAGGTaGCCCATCTTGTGTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: GMLEVRSFLFQNCNWVTWAKHVR*PILCSR Trigger: CCTGGAACACAAGATGGGCCACCTGACGTGCTTTGC...CCAGGTTACCCAATTACAATTTTGAAAGAGAAAAGACCTAACTTCTAACATGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATGTCCCCCACTTGACTTaGGGATCAAGTGAGTCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: VIWNSPSLFREEILEWIHVPHLT*GSSESR Trigger: TCGAGACTCACTTGATCCGCAAGTCAAGTGGGGGAC...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGCAAAGCACGTCAGGTaGCCCATCTTGTGTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIAKHVR*PILCSR Trigger: CCTGGAACACAAGATGGGCCACCTGACGTGCTTTGC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAAGGCAGGAAGAAGATTaGCCCGAAGCAGAGCGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIRQEED*PEAERD Trigger: ATCACGCTCTGCTTCGGGGCAATCTTCTTCCTGCCT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGTCCCCCACTTGACTTaGGGATCAAGTGAGTCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIVPHLT*GSSESR Trigger: TCGAGACTCACTTGATCCGCAAGTCAAGTGGGGGAC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATAGCCTCCGTTCACTCTaGAGTGACTTTCTAGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VIWNSPSLFREEILEWIHSLRSL*SDFLEP Trigger: AGGCTCTAGAAAGTCACTGCAGAGTGAACGGAGGCT...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATGGTTTTCGCGGATCCTaGCTAAGTTGTCTTCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: VIWNSPSLFREEILEWIHGFRGS*LSCLPV Trigger: GACTGGAAGACAACTTAGCCAGGATCCGCGAAAACC...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| 3UTR CAA 72 bp | GACCTTTTCAGATCTGAACCAAGTGCAATGCATCCTTaGCTTAAAGAGACCCAAAGAGGAAATGTATACCCA | + |
|
Preference number: 4 (lower is better) Translates to: DLFRSEPSAMHP*LKETQRGNVYP Trigger: TGGGTATACATTTCCTCTTTGGGTCTCTTTAAGCAAAGGATGCATTGCACTTGGTTCAGATCTGAAAAGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAACATGTATGTCTCGATaGCCTCGGGCCGTAAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSITCMSR*PRAVRC Trigger: ACATCTTACGGCCCGAGGTCATCGAGACATACATGT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCCATCTGCCCCAAGTaGAAACATGCCTCCTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISICPK*KHASCK Trigger: TTTGCAGGAGGCATGTTTGCACTTGGGGCAGATGGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAAGCCTCCGTTCACTCTaGAGTGACTTTCTAGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISLRSL*SDFLEP Trigger: AGGCTCTAGAAAGTCACTGCAGAGTGAACGGAGGCT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGGTTTTCGCGGATCCTaGCTAAGTTGTCTTCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIGFRGS*LSCLPV Trigger: GACTGGAAGACAACTTAGCCAGGATCCGCGAAAACC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAAGTATAGGGAAAGGATaGGCCTCGGTGTTGAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISIGKG*ASVLKI Trigger: GATCTTCAACACCGAGGCTCATCCTTTCCCTATACT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GGCATGTTAGAAGTTAGGTCTTTTCTCTTTCAAAATTGTAATTGGGTAACCTGGCATCTCTTTGATCTTTaGCCTCTTCTCACGGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: GMLEVRSFLFQNCNWVTWHLFDL*PLLTDG Trigger: ACCATCCGTGAGAAGAGGGCAAAGATCAAAGAGATG...CCAGGTTACCCAATTACAATTTTGAAAGAGAAAAGACCTAACTTCTAACATGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | AAACTGAAGTTCAATGATGAGCTACACCTGGGAAGAGACCTTTTCAGATCTGAATACCCCAAGTTCCACTaGTTTCTTTCGAAATATCTC | + |
|
Preference number: 4 (lower is better) Translates to: KLKFNDELHLGRDLFRSEYPKFH*FLSKYL Trigger: GAGATATTTCGAAAGAAAGCAGTGGAACTTGGGGTA...TTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACATCTCTTTGATCTTTaGCCTCTTCTCACGGATGGT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIHLFDL*PLLTDG Trigger: ACCATCCGTGAGAAGAGGGCAAAGATCAAAGAGATG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCATGTTGCCAAACAAACTaGTTGAATGGCCTTCTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RAKAENEMKVRKHEHNHPCCQTN*LNGLLL Trigger: CAAAAGAAGGCCATTCAAGCAGTTTGTTTGGCAACA...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR GCA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATTTTCATATTCAGCAATaGCCAAGGTATTCCAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: VIWNSPSLFREEILEWIHFHIQQ*PRYSRG Trigger: CCCTCTGGAATACCTTGGGCATTGCTGAATATGAAA...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CCA 90 bp | AAACTGAAGTTCAATGATGAGCTACACCTGGGAAGAGACCTTTTCAGATCTGAACAAAATACATCTTCTTaGCTTCGAGATCTGTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: KLKFNDELHLGRDLFRSEQNTSS*LRDLSC Trigger: ACAAGACAGATCTCGAAGCCAAGAAGATGTATTTTG...TTCAGATCTGAAAAGGTCTCTTCCCAGGTGTAGCTCATCATTGAACTTCAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR TCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACACGATTTAGCTTCTTaGAATTCAGTCTTCATGCCC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIHDLAS*NSVFMP Trigger: GGGCATGAAGACTGAATTTCAAGAAGCTAAATCGTG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATTTCATATTCAGCAATaGCCAAGGTATTCCAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIFHIQQ*PRYSRG Trigger: CCCTCTGGAATACCTTGGGCATTGCTGAATATGAAA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAATACTTCAGTGTCTCTaGCAGGAAGAAACTTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIILQCL*QEETLL Trigger: CAGCAAAGTTTCTTCCTGGCAGAGACACTGAAGTAT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCAAGTGAGTCTCGATaGCCTGAACAGCATCAAAAT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSISSESR*PEQHQN Trigger: ATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATGTTGCCAAACAAACTaGTTGAATGGCCTTCTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSICCQTN*LNGLLL Trigger: CAAAAGAAGGCCATTCAAGCAGTTTGTTTGGCAACA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR GCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATACCCCAAGTTCCACTaGTTTCTTTCGAAATATCTC | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIYPKFH*FLSKYL Trigger: GAGATATTTCGAAAGAAAGCAGTGGAACTTGGGGTA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR CCA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACAAAATACATCTTCTTaGCTTCGAGATCTGTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: DCKTIVELRRIIDVCQSIQNTSS*LRDLSC Trigger: ACAAGACAGATCTCGAAGCCAAGAAGATGTATTTTG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS GCA 90 bp | CAAACTTCGCTGCCGCCGGCTGTCAGCGGCTGCGGGGCCGGCTCTTaGGCATCCAGGCCGCCCAGAGCGCGTGTCTGGGCTGCGGGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: QTSLPPAVSGCGAGS*ASRPPRARVWAAGL Trigger: GAGACCCGCAGCCCAGACACGCGCTCTGGGCGGCCTGGATGCGCAAGAGCCGGCCCCGCAGCCGCTGACAGCCGGCGGCAGCGAAGTTTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
||
| CDS GCA 90 bp | GAGCCGCTCAGCAGCCAAACTTCGCTGCCGCCGGCTGTCAGCGGCTaGGGGGCCGGCTCTTGCGCATCCAGGCCGCCCAGAGCGCGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: EPLSSQTSLPPAVSG*GAGSCASRPPRARV Trigger: GACACGCGCTCTGGGCGGCCTGGATGCGCAAGAGCCGGCCCCGCAGCCGCTGACAGCCGGCGGCAGCGAAGTTTGGCTGCTGAGCGGCTC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
||
| CDS GCA 90 bp | TCCTCCGCACGCGCCCCGAGCCCGGGCTTGTGCTCCGCCGGCGGCTaGAAGGCAGGGTTGGAGTGGAACAGGACCCCGCTGAGCAGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: SSARAPSPGLCSAGG*KAGLEWNRTPLSSL Trigger: CAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGGCGCGTGCGGAGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
||
| CDS TCA 90 bp | GGCCAGTTCCGCCCGATCCCACTCCTCTCCGGACAAATAGTAGGCTaGCAGCAGTCCACCGACGAAGCGTATGTTGACTTCAAAAACAGA | + |
|
Preference number: 5 (lower is better) Translates to: GQFRPIPLLSGQIVG*QQSTDEAYVDFKNR Trigger: TCTGTTTTTGAAGTCAACATACGCTTCGTCGGTGGACTGCTGTCAGCCTACTATTTGTCCGGAGAGGAGTGGGATCGGGCGGAACTGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | CTTTTCATTTTGCCTCGTGGCAATAGCTTCCACACCGCCATCAAATCGAAACGCGGCAGGAAGTCCACCTaGGGCAAGCCCCTAAACAGA | + |
|
Preference number: 5 (lower is better) Translates to: LFILPRGNSFHTAIKSKRGRKST*GKPLNR Trigger: TCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCTGCC...GCGTTTCGATTTGATGGCGGTGTGGAAGCTATTGCCACGAGGCAAAATGAAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTGGCAGGAAGTCCACCTaGGGCAAGCCCCTAAACAGA | + |
|
Preference number: 5 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPGRKST*GKPLNR Trigger: TCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCTGCC...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | ACAAGTGCGGGCAATTTCAGCTCCGAGTTCAAGGTAGTGTTGGGCCCGGGCTTCCCACGATTTAGCTTCTaGAAATTCAGTCTTCATGCC | + |
|
Preference number: 5 (lower is better) Translates to: TSAGNFSSEFKVVLGPGFPRFSF*KFSLHA Trigger: GGCATGAAGACTGAATTTCAAGAAGCTAAATCGTGG...GAAGCCCGGGCCCAACACTACCTTGAACTCGGAGCTGAAATTGCCCGCACTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAACGTTAGTCCCCCACTaGACTTGCGGATCAAGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPTLVPH*TCGSSE Trigger: CTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGT...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | GGCATGTTAGAAGTTAGGTCTTTTCTCTTTCAAAATTGTAATTGGGTAACCTGGGGCTGCAAGGCAGGGTaGGAGTGGAACAGGACCCCG | + |
|
Preference number: 5 (lower is better) Translates to: GMLEVRSFLFQNCNWVTWGCKAG*EWNRTP Trigger: CGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCC...CCAGGTTACCCAATTACAATTTTGAAAGAGAAAAGACCTAACTTCTAACATGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | GCTGTCTCCAAGTCCTCCAACCGACACATGATGTTGACCCCACTGTCCACTACTGTAGCTCCTTTGATGTaGCCAAACAAACTGCTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: AVSKSSNRHMMLTPLSTTVAPLM*PNKLLE Trigger: TTCAAGCAGTTTGTTTGGCAACATCAAAGGAGCTAC...AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTTGGAGGACTTGGAGACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGGCTGCAAGGCAGGGTaGGAGTGGAACAGGACCCCG | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIGCKAG*EWNRTP Trigger: CGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTAACCGACACATGATGTaGACCCCACTGTCCACTACT | + |
|
Preference number: 5 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPNRHMM*TPLSTT Trigger: AGTAGTGGACAGTGGGGTCAACATCATGTGTCGGTT...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTGCTTCGAGATCTGTCTaGTCAGACATTAACCACGCC | + |
|
Preference number: 5 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPASRSV*SDINHA Trigger: GGCGTGGTTAATGTCTGACAAGACAGATCTCGAAGC...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | GTCATATGGAATTCTCCCTCTCTTTTTAGAGAGGAGATTTTGGAATGGATTCATGAGTTCAAGGTAGTGTaGGGCCCGGGCTTCCGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: VIWNSPSLFREEILEWIHEFKVV*GPGFRS Trigger: GCTCCGGAAGCCCGGGCCCAACACTACCTTGAACTC...ATGAATCCATTCCAAAATCTCCTCTCTAAAAAGAGAGGGAGAATTCCATATGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | AGGCCAGTGTCGCCAGCTCTTCTGGGATGGCTTTCTCATCTGAATCACAATGAGACTATTGTAGCTCCTTaGATGTTGCCAAACAAACTG | + |
|
Preference number: 5 (lower is better) Translates to: RPVSPALLGWLSHLNHNETIVAP*MLPNKL Trigger: CAGTTTGTTTGGCAACATCAAAGGAGCTACAATAGT...CTCATTGTGATTCAGATGAGAAAGCCATCCCAGAAGAGCTGGCGACACTGGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | AGGCCAGTGTCGCCAGCTCTTCTGGGATGGCTTTCTCATCTGAATCACAATGAGTCAAAATACATCTTCTaGGCTTCGAGATCTGTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: RPVSPALLGWLSHLNHNESKYIF*ASRSVL Trigger: CAAGACAGATCTCGAAGCCAAGAAGATGTATTTTGA...CTCATTGTGATTCAGATGAGAAAGCCATCCCAGAAGAGCTGGCGACACTGGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGAGTTCAAGGTAGTGTaGGGCCCGGGCTTCCGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIEFKVV*GPGFRS Trigger: GCTCCGGAAGCCCGGGCCCAACACTACCTTGAACTC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCATGCCAGGAAGAAACTTaGCTGGACATCGTCATAACT | + |
|
Preference number: 5 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPCQEET*LDIVIT Trigger: AGTTATGACGATGTCCAGCAAAGTTTCTTCCTGGCA...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS TCA 90 bp | CACTGCTTTCTTTCGAAATATCTCCTCTCCGGACAAATAGTAGGCTaGCAGCAGTCCACCGACGAAGCGTATGTTGACTTCAAAAACAGA | + |
|
Preference number: 5 (lower is better) Translates to: HCFLSKYLLSGQIVG*QQSTDEAYVDFKNR Trigger: TCTGTTTTTGAAGTCAACATACGCTTCGTCGGTGGACTGCTGTCAGCCTACTATTTGTCCGGAGAGGAGATATTTCGAAAGAAAGCAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000220088.2 |
||
| CDS-3UTR CAA 90 bp | CTGCTAAGAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAGTAGCTCCTTTGATGTaGCCAAACAAACTGCTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: LLRGCHSCKTCFWWTDKPVAPLM*PNKLLE Trigger: TTCAAGCAGTTTGTTTGGCAACATCAAAGGAGCTAC...TGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTCTTAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | CCCCACTTGACTTGCGGATCAAGTGAGTCTCGATGGCCTGAACAGCATCAAAATTCTGGTTTGTCCAGTTaGTTCAACACTGTTCGAATT | + |
|
Preference number: 5 (lower is better) Translates to: PHLTCGSSESRWPEQHQNSGLSS*FNTVRI Trigger: AATTCGAACAGTGTTGAACAAACTGGACAAACCAGA...ATTTTGATGCTGTTCAGGCCATCGAGACTCACTTGATCCGCAAGTCAAGTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS GCA 90 bp | ATAACCTTTTCGGCAAAGACTGGGTCTCCTGATAAGTGGGACAAGTaGATAAACTCTAAATGCAGAGTTCCAAATTCGGCCAGGATACTG | + |
|
Preference number: 5 (lower is better) Translates to: ITFSAKTGSPDKWDK*INSKCRVPNSARIL Trigger: CAGTATCCTGGCCGAATTTGGAACTCTGCATTTAGAGTTTATGCACTTGTCCCACTTATCAGGAGACCCAGTCTTTGCCGAAAAGGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGGCAGGAAGTCCACCTaGGGCAAGCCCCTAAACAGA | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIGRKST*GKPLNR Trigger: TCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCTGCC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | TTCCGGTCCCAACTTCACATATGTACGATTATAAGATTCATGACAAGTGCGGGCTGGGTCATCATCTCTTaGATCTTTGCCCTCTTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: FRSQLHICTIIRFMTSAGWVIIS*IFALFS Trigger: TGAGAAGAGGGCAAAGATCAAAGAGATGATGACCCA...GCCCGCACTTGTCATGAATCTTATAATCGTACATATGTGAAGTTGGGACCGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | CTTTTCATTTTGCCTCGTGGCAATAGCTTCCACACCGCCATCAAATCGAAACGCTGCCAAACAAACTGCTaGAATGGCCTTCTTTTGATA | + |
|
Preference number: 5 (lower is better) Translates to: LFILPRGNSFHTAIKSKRCQTNC*NGLLLI Trigger: TATCAAAAGAAGGCCATTCAAGCAGTTTGTTTGGCA...GCGTTTCGATTTGATGGCGGTGTGGAAGCTATTGCCACGAGGCAAAATGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | TTAAAACTGAAAACTTGCCAGTGGGACCACAACCTGTGGTTCAGCTTCTTCCCTCCACGATTTAGCTTCTaGAAATTCAGTCTTCATGCC | + |
|
Preference number: 5 (lower is better) Translates to: LKLKTCQWDHNLWFSFFPPRFSF*KFSLHA Trigger: GGCATGAAGACTGAATTTCAAGAAGCTAAATCGTGG...AGGGAAGAAGCTGAACCACAGGTTGTGGTCCCACTGGCAAGTTTTCAGTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | CAGGAAGAAACTTTGCTGGACATCGTCATAACTCTCACGGGCAATGTAAACATCCCGACGAAGCGTATGTaGACTTCAAAAACAGAAACT | + |
|
Preference number: 5 (lower is better) Translates to: QEETLLDIVITLTGNVNIPTKRM*TSKTET Trigger: AGTTTCTGTTTTTGAAGTCAACATACGCTTCGTCGG...GATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTTCTTCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | GAGGCTGTCACAGTTGTAAGACCTGTTTCTGGTGGACAGACAAACCAGATTAACGTAATACTTTTCATTTaGCCTCGTGGCAATAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EAVTVVRPVSGGQTNQINVILFI*PRGNSF Trigger: GAAGCTATTGCCACGAGGCAAAATGAAAAGTATTAC...GTTAATCTGGTTTGTCTGTCCACCAGAAACAGGTCTTACAACTGTGACAGCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | CAGGAAGAAACTTTGCTGGACATCGTCATAACTCTCACGGGCAATGTAAACATCACTATTGTAGCTCCTTaGATGTTGCCAAACAAACTG | + |
|
Preference number: 5 (lower is better) Translates to: QEETLLDIVITLTGNVNITIVAP*MLPNKL Trigger: CAGTTTGTTTGGCAACATCAAAGGAGCTACAATAGT...GATGTTTACATTGCCCGTGAGAGTTATGACGATGTCCAGCAAAGTTTCTTCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAACGTTAGTCCCCCACTaGACTTGCGGATCAAGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSITLVPH*TCGSSE Trigger: CTCACTTGATCCGCAAGTCAAGTGGGGGACTAACGT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGCTTCGAGATCTGTCTaGTCAGACATTAACCACGCC | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIASRSV*SDINHA Trigger: GGCGTGGTTAATGTCTGACAAGACAGATCTCGAAGC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
||
| CDS-3UTR CAA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCACCGACGAAGCGTATGTaGACTTCAAAAACAGAAACT | + |
|
Preference number: 5 (lower is better) Translates to: RAKAENEMKVRKHEHNHPPTKRM*TSKTET Trigger: AGTTTCTGTTTTTGAAGTCAACATACGCTTCGTCGG...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATGGGTCATCATCTCTTaGATCTTTGCCCTCTTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIWVIIS*IFALFS Trigger: TGAGAAGAGGGCAAAGATCAAAGAGATGATGACCCA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
||
| CDS-3UTR CAA 90 bp | AGAGCAAAAGCAGAGAACGAAATGAAAGTGAGGAAACATGAACATAATCACCCATCTGGTTTGTCCAGTTaGTTCAACACTGTTCGAATT | + |
|
Preference number: 5 (lower is better) Translates to: RAKAENEMKVRKHEHNHPSGLSS*FNTVRI Trigger: AATTCGAACAGTGTTGAACAAACTGGACAAACCAGA...TGGGTGATTATGTTCATGTTTCCTCACTTTCATTTCGTTCTCTGCTTTTGCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003843.16 |
||
| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATGCCAGGAAGAAACTTaGCTGGACATCGTCATAACT | + |
|
Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSICQEET*LDIVIT Trigger: AGTTATGACGATGTCCAGCAAAGTTTCTTCCTGGCA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGTAGCTCCTTTGATGTaGCCAAACAAACTGCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIVAPLM*PNKLLE Trigger: TTCAAGCAGTTTGTTTGGCAACATCAAAGGAGCTAC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACCACGATTTAGCTTCTaGAAATTCAGTCTTCATGCC | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIPRFSF*KFSLHA Trigger: GGCATGAAGACTGAATTTCAAGAAGCTAAATCGTGG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATACCGACGAAGCGTATGTaGACTTCAAAAACAGAAACT | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIPTKRM*TSKTET Trigger: AGTTTCTGTTTTTGAAGTCAACATACGCTTCGTCGG...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATGCCAAACAAACTGCTaGAATGGCCTTCTTTTGATA | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSICQTNC*NGLLLI Trigger: TATCAAAAGAAGGCCATTCAAGCAGTTTGTTTGGCA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAACTATTGTAGCTCCTTaGATGTTGCCAAACAAACTG | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSITIVAP*MLPNKL Trigger: CAGTTTGTTTGGCAACATCAAAGGAGCTACAATAGT...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCTGGTTTGTCCAGTTaGTTCAACACTGTTCGAATT | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSISGLSS*FNTVRI Trigger: AATTCGAACAGTGTTGAACAAACTGGACAAACCAGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATATCAAAATACATCTTCTaGGCTTCGAGATCTGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSISKYIF*ASRSVL Trigger: CAAGACAGATCTCGAAGCCAAGAAGATGTATTTTGA...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
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| CDS-3UTR CAA 90 bp | GACTGCAAAACAATTGTAGAACTTAGGAGAATCATAGACGTTTGCCAATCAATAGTAATACTTTTCATTTaGCCTCGTGGCAATAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: DCKTIVELRRIIDVCQSIVILFI*PRGNSF Trigger: GAAGCTATTGCCACGAGGCAAAATGAAAAGTATTAC...TATTGATTGGCAAACGTCTATGATTCTCCTAAGTTCTACAATTGTTTTGCAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 |
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| CDS GCA 72 bp | GCGGCATCCTCCGCACGCGCCCCGAGCCCGGGCTTGTaGTCCGCCGGCGGCTGCAAGGCAGGGTTGGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: AASSARAPSPGL*SAGGCKAGLEW Trigger: CCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGGCGCGTGCGGAGGATGCCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS GCA 72 bp | CCAGCTCCAGGGTCCCCAGGCGCGCCTTCCTCGCGGTaGCGGACTCTCCCCTCGGCGGCATCCTCCGCACGC | + |
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Preference number: 6 (lower is better) Translates to: PAPGSPGAPSSR*RTLPSAASSAR Trigger: GCGTGCGGAGGATGCCGCCGAGGGGAGAGTCCGGCACCGCGAGGAAGGCGCGCCTGGGGACCCTGGAGCTGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 72 bp | TCGGCGGCATCCTCCGCACGCGCCCCGAGCCCGGGCTaGTGCTCCGCCGGCGGCTGCAAGGCAGGGTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SAASSARAPSPG*CSAGGCKAGLE Trigger: CTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGGCGCGTGCGGAGGATGCCGCCGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS GCA 72 bp | CGCGCCCCGAGCCCGGGCTTGTGCTCCGCCGGCGGCTaGAAGGCAGGGTTGGAGTGGAACAGGACCCCGCTG | + |
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Preference number: 6 (lower is better) Translates to: RAPSPGLCSAGG*KAGLEWNRTPL Trigger: CAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGGCGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 72 bp | GGCTCCCCTCCGGCGATCCTCGCCGGGGCGGCTCCTTaGGCAAACAGGCACGCGCGGCAAACCGCTGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: GSPPAILAGAAP*ANRHARQTAGC Trigger: GCAGCCAGCGGTTTGCCGCGCGTGCCTGTTTGCCAAAGGAGCCGCCCCGGCGAGGATCGCCGGAGGGGAGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
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| CDS CAA 90 bp | ACTCTCCCCTCGGCGGCATCCTCCGCACGCGCCCCGAGCCCGGGCTaGTGCTCCGCCGGCGGCTGCAAGGCAGGGTTGGAGTGGAACAGG | + |
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Preference number: 6 (lower is better) Translates to: TLPSAASSARAPSPG*CSAGGCKAGLEWNR Trigger: CCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGGCGCGTGCGGAGGATGCCGCCGAGGGGAGAGT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 90 bp | CCAAACTTCGCTGCCGCCGGCTGTCAGCGGCTGCGGGGCCGGCTCTaGCGCATCCAGGCCGCCCAGAGCGCGTGTCTGGGCTGCGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: PNFAAAGCQRLRGRL*RIQAAQSACLGCGS Trigger: AGACCCGCAGCCCAGACACGCGCTCTGGGCGGCCTGGATGCGCAAGAGCCGGCCCCGCAGCCGCTGACAGCCGGCGGCAGCGAAGTTTGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
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| CDS GCA 72 bp | AGCAGCCAAACTTCGCTGCCGCCGGCTGTCAGCGGCTaGGGGGCCGGCTCTTGCGCATCCAGGCCGCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSQTSLPPAVSG*GAGSCASRPPR Trigger: TCTGGGCGGCCTGGATGCGCAAGAGCCGGCCCCGCAGCCGCTGACAGCCGGCGGCAGCGAAGTTTGGCTGCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
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| CDS CCA 72 bp | GCTCCCCTCCGGCGATCCTCGCCGGGGCGGCTCCTTTaGCAAACAGGCACGCGCGGCAAACCGCTGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: APLRRSSPGRLL*QTGTRGKPLAA Trigger: TGCAGCCAGCGGTTTGCCGCGCGTGCCTGTTTGCCAAAGGAGCCGCCCCGGCGAGGATCGCCGGAGGGGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
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| CDS CAA 90 bp | GCCCCGAGCCCGGGCTTGTGCTCCGCCGGCGGCTGCAAGGCAGGGTaGGAGTGGAACAGGACCCCGCTGAGCAGCTTGGAGGAGTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: APSPGLCSAGGCKAG*EWNRTPLSSLEESG Trigger: GCCTGACTCCTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGGGCTCGGGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 72 bp | CCGGGCTTGTGCTCCGCCGGCGGCTGCAAGGCAGGGTaGGAGTGGAACAGGACCCCGCTGAGCAGCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: PGLCSAGGCKAG*EWNRTPLSSLE Trigger: CTCCAAGCTGCTCAGCGGGGTCCTGTTCCACTCCAACCCTGCCTTGCAGCCGCCGGCGGAGCACAAGCCCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 90 bp | GCTTCCCTGAGAGCCCGCTCGTGGTTTTCGCGGATCCTGGCTAAGTaGTCTTCCAGTCCAGCTCCAGGGTCCCCAGGCGCGCCTTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: ASLRARSWFSRILAK*SSSPAPGSPGAPSS Trigger: CGAGGAAGGCGCGCCTGGGGACCCTGGAGCTGGACTGGAAGACAACTTAGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 72 bp | AGAGCCCGCTCGTGGTTTTCGCGGATCCTGGCTAAGTaGTCTTCCAGTCCAGCTCCAGGGTCCCCAGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: RARSWFSRILAK*SSSPAPGSPGA Trigger: CGCGCCTGGGGACCCTGGAGCTGGACTGGAAGACAACTTAGCCAGGATCCGCGAAAACCACGAGCGGGCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS GCA 72 bp | CTAAATGCAGAGTTCCAAATTCGGCCAGGATACTGCTaGCTCCAGAGGCCCAGGGCCAGTTCCGCCCGATCC | + |
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Preference number: 6 (lower is better) Translates to: LNAEFQIRPGYC*LQRPRASSARS Trigger: GGATCGGGCGGAACTGGCCCTGGGCCTCTGGAGGCAGCAGTATCCTGGCCGAATTTGGAACTCTGCATTTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CCA 72 bp | GGCTCCTTTGGCAAACAGGCACGCGCGGCAAACCGCTaGCTGCAGCCCCTCATCGCAGTTGGTCAAATTTTC | + |
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Preference number: 6 (lower is better) Translates to: GSFGKQARAANR*LQPLIAVGQIF Trigger: GAAAATTTGACCAACTGCGATGAGGGGCTGCAGCCAGCGGTTTGCCGCGCGTGCCTGTTTGCCAAAGGAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220088.2 |
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| CDS CCA 72 bp | TGCAGGGTCTCCTTGGCTTCCCTGAGAGCCCGCTCGTaGTTTTCGCGGATCCTGGCTAAGTTGTCTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: CRVSLASLRARS*FSRILAKLSSS Trigger: ACTGGAAGACAACTTAGCCAGGATCCGCGAAAACCACGAGCGGGCTCTCAGGGAAGCCAAGGAGACCCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 72 bp | AGGAAGTCCACCTTGGGCAAGCCCCTAAACAGATCCTaGTCACGCAGCTGGTCCTGGGCCACCTTTTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: RKSTLGKPLNRS*SRSWSWATFSF Trigger: GAAGGAAAAGGTGGCCCAGGACCAGCTGCGTGACAAGGATCTGTTTAGGGGCTTGCCCAAGGTGGACTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CCA 72 bp | TGGGCCACCTTTTCCTTCTCCAGCAGAATGTCTCTTTaGATCTCCTCCGGCAGCTTCTGCAGGGTCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: WATFSFSSRMSL*ISSGSFCRVSL Trigger: CAAGGAGACCCTGCAGAAGCTGCCGGAGGAGATCCAAAGAGACATTCTGCTGGAGAAGGAAAAGGTGGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS CAA 72 bp | CTGGGCCACCTTTTCCTTCTCCAGCAGAATGTCTCTTaGGATCTCCTCCGGCAGCTTCTGCAGGGTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LGHLFLLQQNVS*DLLRQLLQGLL Trigger: AAGGAGACCCTGCAGAAGCTGCCGGAGGAGATCCAAAGAGACATTCTGCTGGAGAAGGAAAAGGTGGCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS GCA 72 bp | ATTATTCCAAGCATGGGTCATCATCTCTTTGATCTTTaGCCTCTTCTCACGGATGGTGGCGTCAGCGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: IIPSMGHHLFDL*PLLTDGGVSGL Trigger: GAGCCCGCTGACGCCACCATCCGTGAGAAGAGGGCAAAGATCAAAGAGATGATGACCCATGCTTGGAATAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS GCA 72 bp | CCAGTTCCGCCCGATCCCACTTTTCATATTCAGCAATaGCCAAGGTATTCCAGAGGGAGTATGAAATGCAGG | + |
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Preference number: 6 (lower is better) Translates to: PVPPDPTFHIQQ*PRYSRGSMKCR Trigger: CCTGCATTTCATACTCCCTCTGGAATACCTTGGGCATTGCTGAATATGAAAAGTGGGATCGGGCGGAACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000220088.2 |
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| CDS GCA 72 bp | TCGGCAAAGACTGGGTCTCCTGATAAGTGGGACAAGTaGATAAACTCTAAATGCAGAGTTCCAAATTCGGCC | + |
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Preference number: 6 (lower is better) Translates to: SAKTGSPDKWDK*INSKCRVPNSA Trigger: GGCCGAATTTGGAACTCTGCATTTAGAGTTTATGCACTTGTCCCACTTATCAGGAGACCCAGTCTTTGCCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000218317.2 ENSMUST00000220088.2 |
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| CDS TCA 72 bp | ATATTCAGCAATGCCCAAGGTATTCCAGAGGGAGTATaGAATGCAGGTAGCAATTTTACCCCAAGTTCCACT | + |
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Preference number: 6 (lower is better) Translates to: IFSNAQGIPEGV*NAGSNFTPSST Trigger: AGTGGAACTTGGGGTAAAATTGCTACCTGCATTTCATACTCCCTCTGGAATACCTTGGGCATTGCTGAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003843.16 ENSMUST00000105470.9 ENSMUST00000220088.2 |
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