Pregenerated sensors for MAMSTR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042918Ensembl transcript IDs: ENSMUST00000148532.4, ENSMUST00000210169.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTTaGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTAGACCCAAGG | + |
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Preference number: 1 (lower is better) Translates to: AAVSQEGTRASVLCS*RVPVDADDLSLDPR Trigger: CCTTGGGTCTAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| 3UTR CCA 72 bp | AGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTTaGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: SQEGTRASVLCS*RVPVDADDLSL Trigger: TAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | ACGAGGGCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCCCAGCGCCTTGGGCTTaGGGCGGGGCCAGGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TRASVLCSWRVPVDADDLPAPWA*GGAREQ Trigger: CTGCTCCCTGGCCCCGCCTCAAGCCCAAGGCGCTGG...GAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | TCAGCAGCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTTGGAGGCCCAGAGCCCAGTaGTGGACCCCCACTCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SAAAVSQEGTRASVLCSWRPRAQ*WTPTQG Trigger: GCCTTGAGTGGGGGTCCACCACTGGGCTCTGGGCCT...CCAACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGCTGCTGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR GCA 90 bp | GGGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCACGCAGGCGCAGCTGCTaGCTAAGCTCTGAGACCGTC | + |
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Preference number: 4 (lower is better) Translates to: GAIQRPHRQVQAHKISAARRRSC*LSSETV Trigger: GACGGTCTCAGAGCTTAGGCAGCAGCTGCGCCTGCG...TGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR GCA 90 bp | ACGAGGGCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCCCCCGCAGGCGCAGCTaGTGCCTAAGCTCTGAGACC | + |
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Preference number: 4 (lower is better) Translates to: TRASVLCSWRVPVDADDLPRRRS*CLSSET Trigger: GGTCTCAGAGCTTAGGCAGCAGCTGCGCCTGCGGGG...GAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | TCAGCAGCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTTGGAGCTGGAGCTGGAACTaGAGCTGGAGTCGGAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: SAAAVSQEGTRASVLCSWSWSWN*SWSRSR Trigger: CCGACTCCGACTCCAGCTCCAGTTCCAGCTCCAGCT...CCAACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGCTGCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | ACGAGGGCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCCCCAGAGCCCAGTGGTaGACCCCCACTCAAGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: TRASVLCSWRVPVDADDLPRAQW*TPTQGL Trigger: GAGGCCTTGAGTGGGGGTCCACCACTGGGCTCTGGG...GAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | GGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGGGGACCCAGGGTTaGCCTCTCAACTTGCAGATT | + |
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Preference number: 4 (lower is better) Translates to: GPYRGPIGRSRHIRYQQQRGTQG*PLNLQI Trigger: AATCTGCAAGTTGAGAGGTCAACCCTGGGTCCCCCG...CTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | CCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGAAGTTCCAGCTTGTGTaGAGGGGGCGAGGGACTGGA | + |
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Preference number: 4 (lower is better) Translates to: PYRGPIGRSRHIRYQQQRKFQLV*RGRGTG Trigger: TCCAGTCCCTCGCCCCCTTCACACAAGCTGGAACTT...CCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | CATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGTGAGTCAGGAGGGGAGTCCAAGGAATCAGTaGGGGCCCTTGGAGAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: HRQVQAHKISAAAVSQEGSPRNQ*GPLEKG Trigger: CCCCTTCTCCAAGGGCCCTCACTGATTCCTTGGACT...CCCCTCCTGACTCACCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | GGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGAGCTGGAACTGGAGCTaGAGTCGGAGTCGGAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GPYRGPIGRSRHIRYQQQSWNWS*SRSRSQ Trigger: TTGGCTCCGACTCCGACTCCAGCTCCAGTTCCAGCT...CTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | ATATCAGCAGCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTCAGAGTCAGGCTAGCTaGAGGTGTCGGGAAAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: ISAAAVSQEGTRASVLCSQSQAS*RCRERS Trigger: GCTCCTTTCCCGACACCTCCAGCTAGCCTGACTCTG...ACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGCTGCTGATAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | CATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGTGAGTCAGGAGGGGAGGCAGCAGGTCATCTaGCTCCACTTGGTCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: HRQVQAHKISAAAVSQEGRQQVI*LHLVFQ Trigger: CTGGAAGACCAAGTGGAGCCAGATGACCTGCTGCCT...CCCCTCCTGACTCACCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | CATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGTGAGTCAGGAGGGGTCAGAGGTGCAGTCTTaGTTCCGTCTGTGGATCCGA | + |
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Preference number: 4 (lower is better) Translates to: HRQVQAHKISAAAVSQEGSEVQS*FRLWIR Trigger: TCGGATCCACAGACGGAATCAAGACTGCACCTCTGA...CCCCTCCTGACTCACCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | ATATCAGCAGCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTAGACAGCAGGTCAAATaGGCCAGGGAAGTCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: ISAAAVSQEGTRASVLCSRQQVK*AREVQG Trigger: CCCTTGGACTTCCCTGGCTCATTTGACCTGCTGTCT...ACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGCTGCTGATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | ACGAGGGCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTTGGAACGGATGATTTaGGAGCGCTGGGAGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: TRASVLCSWRVPVDADDLLERMI*ERWEEA Trigger: AGCCTCCTCCCAGCGCTCCCAAATCATCCGTTCCAA...GAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | ATATCAGCAGCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTAAGAGGCAGGAACAGTaGGCAAAGCTGGAGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: ISAAAVSQEGTRASVLCSKRQEQ*AKLEPE Trigger: CTCTGGCTCCAGCTTTGCCCACTGTTCCTGCCTCTT...ACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGCTGCTGATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | GTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTAGACCCAATCAGTGAGGGCCCTTaGAGAAGGGGACAGGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: VLCSWRVPVDADDLSLDPISEGP*RRGQGA Trigger: AGCTCCCTGTCCCCTTCTCCAAGGGCCCTCACTGAT...TGGGTCTAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | GCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTACTGCTGCCTAAGCTCTaGGACCGTCAGCTCTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: ASVLCSWRVPVDADDLSLLLPKL*DRQLFQ Trigger: CTGGAAGAGCTGACGGTCTCAGAGCTTAGGCAGCAG...TAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | GCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGTCATCTGGCTCCACTTaGTCTTCCAGGATGTCATCG | + |
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Preference number: 4 (lower is better) Translates to: AIQRPHRQVQAHKISAAASSGST*SSRMSS Trigger: CGATGACATCCTGGAAGACCAAGTGGAGCCAGATGA...CGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR GCA 90 bp | GTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTAGACCCACTCAACTTGCAGATTTaGCCTGGGCCCTTGTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VLCSWRVPVDADDLSLDPLNLQI*PGPLSL Trigger: CAGAGACAAGGGCCCAGGGCAAATCTGCAAGTTGAG...TGGGTCTAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR GCA 90 bp | GTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTAGACCCAGGATGTCATCGATGTTaGGGTTTGGAAGCAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: VLCSWRVPVDADDLSLDPGCHRC*GLEAAA Trigger: CGCAGCTGCTTCCAAACCGCAACATCGATGACATCC...TGGGTCTAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | CCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGGGGAGATTCCTTCTTTaGAGCCCTCCAAGGACAATA | + |
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Preference number: 4 (lower is better) Translates to: PYRGPIGRSRHIRYQQQRGRFLL*SPPRTI Trigger: TATTGTCCTTGGAGGGCTCCAAAGAAGGAATCTCCC...CCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | GCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGAGGATGTGGTCTCTGTaGATTCTTTTCCCAAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: AIQRPHRQVQAHKISAAARMWSL*ILFPKR Trigger: CCTCTTTGGGAAAAGAATTCACAGAGACCACATCCT...CGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR TCA 90 bp | GGGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCATCCAGTTTAAGGGTCTaGAGTTCCAGCTTGTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: GAIQRPHRQVQAHKISAASSLRV*SSSLCE Trigger: TTCACACAAGCTGGAACTTCAGACCCTTAAACTGGA...TGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CCA 90 bp | CATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGTGAGTCAGGAGGGGAATGTTGGGAGTTCTTaGGAGATTCCTTCTTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: HRQVQAHKISAAAVSQEGNVGSS*EIPSLE Trigger: CTCCAAAGAAGGAATCTCCCAAGAACTCCCAACATT...CCCCTCCTGACTCACCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 90 bp | CTCGCCTGGGCTTCGGCCGTTCTCTGGGCGGGGTGCCACCACGCATaGGCTCCAGGAGCATCGCTTTGGTCCCGGACACCGGGAGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LAWASAVLWAGCHHA*APGASLWSRTPGVP Trigger: GGGGACTCCCGGTGTCCGGGACCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCCCGCCCAGAGAACGGCCGAAGCCCAGGCGAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 90 bp | CCTCTTTGTCCTCTCGCCTGGGCTTCGGCCGTTCTCTGGGCGGGGTaGCACCACGCATGCGCTCCAGGAGCATCGCTTTGGTCCCGGACA | + |
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Preference number: 5 (lower is better) Translates to: PLCPLAWASAVLWAG*HHACAPGASLWSRT Trigger: TGTCCGGGACCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCCCGCCCAGAGAACGGCCGAAGCCCAGGCGAGAGGACAAAGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 90 bp | GTCCGCAGAGAAGATGCTGGGGCCGGGAGGCCCAGAGCCCAGTGGTaGACCCCCACTCAAGGCCTCCAGCCAGTCCAAGGAATCAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: VRREDAGAGRPRAQW*TPTQGLQPVQGISE Trigger: CTCACTGATTCCTTGGACTGGCTGGAGGCCTTGAGTGGGGGTCCACCACTGGGCTCTGGGCCTCCCGGCCCCAGCATCTTCTCTGCGGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000148532.4 ENSMUST00000210169.2 |
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| CDS CCA 90 bp | AGAGCAGACTGCCACTGGGATCAGATAGGTCCGCAGAGAAGATGCTaGGGCCGGGAGGCCCAGAGCCCAGTGGTGGACCCCCACTCAAGG | + |
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Preference number: 5 (lower is better) Translates to: RADCHWDQIGPQRRC*GREAQSPVVDPHSR Trigger: CCTTGAGTGGGGGTCCACCACTGGGCTCTGGGCCTCCCGGCCCCAGCATCTTCTCTGCGGACCTATCTGATCCCAGTGGCAGTCTGCTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000148532.4 ENSMUST00000210169.2 |
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| CDS-3UTR CAA 90 bp | GAGGGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCCCAGCGCCTTGGGCTaGAGGCGGGGCCAGGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: EGPYRGPIGRSRHIRYQQPSALG*RRGQGA Trigger: TGCTCCCTGGCCCCGCCTCAAGCCCAAGGCGCTGGG...CTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS TCA 90 bp | GGGAAGTCCAAGGGCACGGGAGGCAGCAGGTCTGCAGGAGGAGTGTaGGCTTTAGGGGGATGGATTCTGCTCACTGCGCTGTTTCCAACC | + |
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Preference number: 5 (lower is better) Translates to: GKSKGTGGSRSAGGV*ALGGWILLTALFPT Trigger: GGTTGGAAACAGCGCAGTGAGCAGAATCCATCCCCCTAAAGCTCACACTCCTCCTGCAGACCTGCTGCCTCCCGTGCCCTTGGACTTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210169.2 |
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| CDS GCA 90 bp | AGCTGGAGAGGGAGTGGGAGCAGGAACAGAAGCCGGAGCGGGAGCTaGTCCCAGGGGATCCGTAGCTCCAGAAAACTTCAGCCTACGATT | + |
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Preference number: 5 (lower is better) Translates to: SWRGSGSRNRSRSGS*SQGIRSSRKLQPTI Trigger: AATCGTAGGCTGAAGTTTTCTGGAGCTACGGATCCCCTGGGAGCAGCTCCCGCTCCGGCTTCTGTTCCTGCTCCCACTCCCTCTCCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 90 bp | TCGATGTTGCGGTTTGGAAGCAGCTGCGCCCTACGGATCGCTTCCTaGAGCTCCTCCTCCAGAGTCAGGCTAGCTGGAGGTGTCGGGAAA | + |
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Preference number: 5 (lower is better) Translates to: SMLRFGSSCALRIAS*SSSSRVRLAGGVGK Trigger: TTTCCCGACACCTCCAGCTAGCCTGACTCTGGAGGAGGAGCTGCAGGAAGCGATCCGTAGGGCGCAGCTGCTTCCAAACCGCAACATCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | GGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGCAGTCCAGGAGCATCGCTTaGGTCCCGGACACCGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: GPYRGPIGRSRHIRYQQQSRSIA*VPDTGS Trigger: ACTCCCGGTGTCCGGGACCAAAGCGATGCTCCTGGA...CTGCTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | AGGGCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTCCGGAGCAGCGGCCTCTTaGTCCTCTCGCCTGGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: RASVLCSWRVPVDADDLSGAAAS*SSRLGF Trigger: GAAGCCCAGGCGAGAGGACAAAGAGGCCGCTGCTCC...GGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 90 bp | TCCCAAAGAGGTGGGTCCGGGGGACCCAGGGTTGACCTCTCAACTTaGAGATTTGCCCTGGGCCCTTGTCTCTGTTCTGGAGGCATGTAC | + |
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Preference number: 5 (lower is better) Translates to: SQRGGSGGPRVDLST*RFALGPCLCSGGMY Trigger: GTACATGCCTCCAGAACAGAGACAAGGGCCCAGGGCAAATCTGCAAGTTGAGAGGTCAACCCTGGGTCCCCCGGACCCACCTCTTTGGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 90 bp | GGGAAGTCCAAGGGCACGGGAGGCAGCAGGTCATCTGGCTCCACTTaGTCTTCCAGGATGTCATCGATGTTGCGGTTTGGAAGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: GKSKGTGGSRSSGST*SSRMSSMLRFGSSC Trigger: GCAGCTGCTTCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGATGACCTGCTGCCTCCCGTGCCCTTGGACTTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | AGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGTGAGTCAGGAGGGGACGCATCGATGTTGCGGTTaGGAAGCAGCTGCGCCCTAC | + |
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Preference number: 5 (lower is better) Translates to: RQVQAHKISAAAVSQEGTHRCCG*EAAAPY Trigger: GTAGGGCGCAGCTGCTTCCAAACCGCAACATCGATG...CGTCCCCTCCTGACTCACCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | TCAGCAGCAGCGGTGAGTCAGGAGGGGACGAGGGCATCAGTACTCTGTAGTTGGATTTGCCCTGGGCCCTaGTCTCTGTTCTGGAGGCAT | + |
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Preference number: 5 (lower is better) Translates to: SAAAVSQEGTRASVLCSWICPGP*SLFWRH Trigger: ATGCCTCCAGAACAGAGACAAGGGCCCAGGGCAAAT...CCAACTACAGAGTACTGATGCCCTCGTCCCCTCCTGACTCACCGCTGCTGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | ACGAGGGCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCAAGGGGACAGGGAGCTaGTGGGGGACGGTAGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: TRASVLCSWRVPVDADDLKGTGS*WGTVVK Trigger: CTTCACTACCGTCCCCCACAAGCTCCCTGTCCCCTT...GAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGCCCTCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 90 bp | CCAGAGCTGGGCCTGAGGCTGAGATCCATGGATCTGAATCAGAGGTaGAGTCTTGATTCCGTCTGTGGATCCGAAGCTGCAGGACAGAGC | + |
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Preference number: 5 (lower is better) Translates to: PELGLRLRSMDLNQR*SLDSVCGSEAAGQS Trigger: GCTCTGTCCTGCAGCTTCGGATCCACAGACGGAATCAAGACTGCACCTCTGATTCAGATCCATGGATCTCAGCCTCAGGCCCAGCTCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | AGGCAGGTCCAGGCACATAAGATATCAGCAGCAGCGGTGAGTCAGGAGGGGACGATCAGAGGTGCAGTCTaGATTCCGTCTGTGGATCCG | + |
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Preference number: 5 (lower is better) Translates to: RQVQAHKISAAAVSQEGTIRGAV*IPSVDP Trigger: CGGATCCACAGACGGAATCAAGACTGCACCTCTGAT...CGTCCCCTCCTGACTCACCGCTGCTGCTGATATCTTATGTGCCTGGACCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS TCA 90 bp | GGGCCTGAGGCTGAGATCCATGGATCTGAATCAGAGGTGCAGTCTTaGTTCCGTCTGTGGATCCGAAGCTGCAGGACAGAGCGGAACTTG | + |
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Preference number: 5 (lower is better) Translates to: GPEAEIHGSESEVQS*FRLWIRSCRTERNL Trigger: CAAGTTCCGCTCTGTCCTGCAGCTTCGGATCCACAGACGGAATCAAGACTGCACCTCTGATTCAGATCCATGGATCTCAGCCTCAGGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS TCA 90 bp | TGCTGCCTAAGCTCTGAGACCGTCAGCTCTTCCAGTTTAAGGGTCTaGAGTTCCAGCTTGTGTGAAGGGGGCGAGGGACTGGAGACTCCT | + |
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Preference number: 5 (lower is better) Translates to: CCLSSETVSSSSLRV*SSSLCEGGEGLETP Trigger: AGGAGTCTCCAGTCCCTCGCCCCCTTCACACAAGCTGGAACTTCAGACCCTTAAACTGGAAGAGCTGACGGTCTCAGAGCTTAGGCAGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 90 bp | GTCTGCAGGAGGAGTGTGAGCTTTAGGGGGATGGATTCTGCTCACTaGGCTGTTTCCAACCCACTTCTCCTTCGACGAGACCCTGGAGTT | + |
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Preference number: 5 (lower is better) Translates to: VCRRSVSFRGMDSAH*AVSNPLLLRRDPGV Trigger: AACTCCAGGGTCTCGTCGAAGGAGAAGTGGGTTGGAAACAGCGCAGTGAGCAGAATCCATCCCCCTAAAGCTCACACTCCTCCTGCAGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210169.2 |
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| CDS-3UTR CAA 90 bp | GAGGGGCCATACAGAGGCCCCATAGGCAGGTCCAGGCACATAAGATATCAGCAGAGGATGTCATCGATGTaGCGGTTTGGAAGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: EGPYRGPIGRSRHIRYQQRMSSM*RFGSSC Trigger: GCAGCTGCTTCCAAACCGCAACATCGATGACATCCT...CTGCTGATATCTTATGTGCCTGGACCTGCCTATGGGGCCTCTGTATGGCCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 90 bp | CCTCCCCTAAATGTGGGAGCTAATCGCCTACCATCTGGCTCCACTTaGTCTTCCAGGATGTCATCGATGTTGCGGTTTGGAAGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PPLNVGANRLPSGST*SSRMSSMLRFGSSC Trigger: GCAGCTGCTTCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGATGGTAGGCGATTAGCTCCCACATTTAGGGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210169.2 |
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| CDS TCA 90 bp | AGATTTGCCCTGGGCCCTTGTCTCTGTTCTGGAGGCATGTACAGGTaGTATGTCAAGTTCCCCCTGACCTTAGGCTCCTTCCAATGTTGG | + |
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Preference number: 5 (lower is better) Translates to: RFALGPCLCSGGMYR*YVKFPLTLGSFQCW Trigger: CCAACATTGGAAGGAGCCTAAGGTCAGGGGGAACTTGACATATCACCTGTACATGCCTCCAGAACAGAGACAAGGGCCCAGGGCAAATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS-3UTR CAA 90 bp | GCATCAGTACTCTGTAGTTGGAGGGTCCCTGTGGATGCAGATGACCTCTCCTTACAATGTTGGGAGTTCTaGGGAGATTCCTTCTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: ASVLCSWRVPVDADDLSLQCWEF*GDSFFG Trigger: TCCAAAGAAGGAATCTCCCAAGAACTCCCAACATTG...TAAGGAGAGGTCATCTGCATCCACAGGGACCCTCCAACTACAGAGTACTGATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | CCCAGCGCCTTGGGCTTGAGGCGGGGCCAGGGAGCAGCGGCCTCTTaGTCCTCTCGCCTGGGCTTCGGCCGTTCTCTGGGCGGGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: PSALGLRRGQGAAAS*SSRLGFGRSLGGVP Trigger: TGGCACCCCGCCCAGAGAACGGCCGAAGCCCAGGCGAGAGGACAAAGAGGCCGCTGCTCCCTGGCCCCGCCTCAAGCCCAAGGCGCTGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 72 bp | GGGGTGCCACCACGCATGCGCTCCAGGAGCATCGCTTaGGTCCCGGACACCGGGAGTCCCCGCAGGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GVPPRMRSRSIA*VPDTGSPRRRS Trigger: GCTGCGCCTGCGGGGACTCCCGGTGTCCGGGACCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 72 bp | GGGTGCCACCACGCATGCGCTCCAGGAGCATCGCTTTaGTCCCGGACACCGGGAGTCCCCGCAGGCGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: GCHHACAPGASL*SRTPGVPAGAA Trigger: AGCTGCGCCTGCGGGGACTCCCGGTGTCCGGGACCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | TCTCTGGGCGGGGTGCCACCACGCATGCGCTCCAGGAGCATCGCTTaGGTCCCGGACACCGGGAGTCCCCGCAGGCGCAGCTGCTGCCTA | + |
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Preference number: 6 (lower is better) Translates to: SLGGVPPRMRSRSIA*VPDTGSPRRRSCCL Trigger: TAGGCAGCAGCTGCGCCTGCGGGGACTCCCGGTGTCCGGGACCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCCCGCCCAGAGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 72 bp | GCTTCGGCCGTTCTCTGGGCGGGGTGCCACCACGCATaGGCTCCAGGAGCATCGCTTTGGTCCCGGACACCG | + |
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Preference number: 6 (lower is better) Translates to: ASAVLWAGCHHA*APGASLWSRTP Trigger: CGGTGTCCGGGACCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCCCGCCCAGAGAACGGCCGAAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 72 bp | CCTCTCGCCTGGGCTTCGGCCGTTCTCTGGGCGGGGTaGCACCACGCATGCGCTCCAGGAGCATCGCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: PLAWASAVLWAG*HHACAPGASLW Trigger: CCAAAGCGATGCTCCTGGAGCGCATGCGTGGTGGCACCCCGCCCAGAGAACGGCCGAAGCCCAGGCGAGAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | GCCTTCACCGTGCTGGGTAGCCGAGTAGTTCCCAGCGCCTTGGGCTaGAGGCGGGGCCAGGGAGCAGCGGCCTCTTTGTCCTCTCGCCTG | + |
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Preference number: 6 (lower is better) Translates to: AFTVLGSRVVPSALG*RRGQGAAASLSSRL Trigger: CAGGCGAGAGGACAAAGAGGCCGCTGCTCCCTGGCCCCGCCTCAAGCCCAAGGCGCTGGGAACTACTCGGCTACCCAGCACGGTGAAGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 72 bp | GTGCTGGGTAGCCGAGTAGTTCCCAGCGCCTTGGGCTaGAGGCGGGGCCAGGGAGCAGCGGCCTCTTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: VLGSRVVPSALG*RRGQGAAASLS Trigger: GGACAAAGAGGCCGCTGCTCCCTGGCCCCGCCTCAAGCCCAAGGCGCTGGGAACTACTCGGCTACCCAGCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | GCGCTTGCCTTCACCGTGCTGGGTAGCCGAGTAGTTCCCAGCGCCTaGGGCTTGAGGCGGGGCCAGGGAGCAGCGGCCTCTTTGTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: ALAFTVLGSRVVPSA*GLRRGQGAAASLSS Trigger: AGAGGACAAAGAGGCCGCTGCTCCCTGGCCCCGCCTCAAGCCCAAGGCGCTGGGAACTACTCGGCTACCCAGCACGGTGAAGGCAAGCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 72 bp | TGCCACTGGGATCAGATAGGTCCGCAGAGAAGATGCTaGGGCCGGGAGGCCCAGAGCCCAGTGGTGGACCCC | + |
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Preference number: 6 (lower is better) Translates to: CHWDQIGPQRRC*GREAQSPVVDP Trigger: GGGGTCCACCACTGGGCTCTGGGCCTCCCGGCCCCAGCATCTTCTCTGCGGACCTATCTGATCCCAGTGGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148532.4 ENSMUST00000210169.2 |
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| CDS GCA 72 bp | TTGGTCCCGGACACCGGGAGTCCCCGCAGGCGCAGCTaGTGCCTAAGCTCTGAGACCGTCAGCTCTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: LVPDTGSPRRRS*CLSSETVSSSS Trigger: ACTGGAAGAGCTGACGGTCTCAGAGCTTAGGCAGCAGCTGCGCCTGCGGGGACTCCCGGTGTCCGGGACCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 72 bp | GGGAGTGGGAGCAGGAACAGAAGCCGGAGCGGGAGCTaGTCCCAGGGGATCCGTAGCTCCAGAAAACTTCAG | + |
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Preference number: 6 (lower is better) Translates to: GSGSRNRSRSGS*SQGIRSSRKLQ Trigger: CTGAAGTTTTCTGGAGCTACGGATCCCCTGGGAGCAGCTCCCGCTCCGGCTTCTGTTCCTGCTCCCACTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS TCA 72 bp | AAGGGCACGGGAGGCAGCAGGTCTGCAGGAGGAGTGTaGGCTTTAGGGGGATGGATTCTGCTCACTGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: KGTGGSRSAGGV*ALGGWILLTAL Trigger: CAGCGCAGTGAGCAGAATCCATCCCCCTAAAGCTCACACTCCTCCTGCAGACCTGCTGCCTCCCGTGCCCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210169.2 |
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| CDS CAA 72 bp | CGTCTGTGGATCCGAAGCTGCAGGACAGAGCGGAACTaGGAACGGATGATTTGGGAGCGCTGGGAGGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RLWIRSCRTERN*ERMIWERWEEA Trigger: AGCCTCCTCCCAGCGCTCCCAAATCATCCGTTCCAAGTTCCGCTCTGTCCTGCAGCTTCGGATCCACAGACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | AGGGAAGTCCAAGGGCACGGGAGGCAGCAGGTCATCTGGCTCCACTaGGTCTTCCAGGATGTCATCGATGTTGCGGTTTGGAAGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: REVQGHGRQQVIWLH*VFQDVIDVAVWKQL Trigger: CAGCTGCTTCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGATGACCTGCTGCCTCCCGTGCCCTTGGACTTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 72 bp | CTGGCTCCACTTGGTCTTCCAGGATGTCATCGATGTTaGGGTTTGGAAGCAGCTGCGCCCTACGGATCGCTT | + |
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Preference number: 6 (lower is better) Translates to: LAPLGLPGCHRC*GLEAAAPYGSL Trigger: AAGCGATCCGTAGGGCGCAGCTGCTTCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148532.4 ENSMUST00000210169.2 |
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| CDS CCA 72 bp | AAGGGCACGGGAGGCAGCAGGTCATCTGGCTCCACTTaGTCTTCCAGGATGTCATCGATGTTGCGGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: KGTGGSRSSGST*SSRMSSMLRFG Trigger: TCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGATGACCTGCTGCCTCCCGTGCCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 72 bp | AGGGAAGTCCAAGGGCACGGGAGGCAGCAGGTCATCTaGCTCCACTTGGTCTTCCAGGATGTCATCGATGTT | + |
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Preference number: 6 (lower is better) Translates to: REVQGHGRQQVI*LHLVFQDVIDV Trigger: AACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGATGACCTGCTGCCTCCCGTGCCCTTGGACTTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 72 bp | TCTGGCTCCACTTGGTCTTCCAGGATGTCATCGATGTaGCGGTTTGGAAGCAGCTGCGCCCTACGGATCGCT | + |
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Preference number: 6 (lower is better) Translates to: SGSTWSSRMSSM*RFGSSCALRIA Trigger: AGCGATCCGTAGGGCGCAGCTGCTTCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000148532.4 ENSMUST00000210169.2 |
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| CDS TCA 72 bp | AGCTCTGAGACCGTCAGCTCTTCCAGTTTAAGGGTCTaGAGTTCCAGCTTGTGTGAAGGGGGCGAGGGACTG | + |
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Preference number: 6 (lower is better) Translates to: SSETVSSSSLRV*SSSLCEGGEGL Trigger: CAGTCCCTCGCCCCCTTCACACAAGCTGGAACTTCAGACCCTTAAACTGGAAGAGCTGACGGTCTCAGAGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS TCA 72 bp | CTGGGCCCTTGTCTCTGTTCTGGAGGCATGTACAGGTaGTATGTCAAGTTCCCCCTGACCTTAGGCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LGPCLCSGGMYR*YVKFPLTLGSF Trigger: GAAGGAGCCTAAGGTCAGGGGGAACTTGACATATCACCTGTACATGCCTCCAGAACAGAGACAAGGGCCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS GCA 72 bp | GGCCTGAGGCTGAGATCCATGGATCTGAATCAGAGGTaGAGTCTTGATTCCGTCTGTGGATCCGAAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GLRLRSMDLNQR*SLDSVCGSEAA Trigger: TGCAGCTTCGGATCCACAGACGGAATCAAGACTGCACCTCTGATTCAGATCCATGGATCTCAGCCTCAGGCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS TCA 72 bp | GCTGAGATCCATGGATCTGAATCAGAGGTGCAGTCTTaGTTCCGTCTGTGGATCCGAAGCTGCAGGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: AEIHGSESEVQS*FRLWIRSCRTE Trigger: CTCTGTCCTGCAGCTTCGGATCCACAGACGGAATCAAGACTGCACCTCTGATTCAGATCCATGGATCTCAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 72 bp | GTCAAGTTCCCCCTGACCTTAGGCTCCTTCCAATGTTaGGAGTTCTTGGGAGATTCCTTCTTTGGAGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: VKFPLTLGSFQC*EFLGDSFFGAL Trigger: GAGGGCTCCAAAGAAGGAATCTCCCAAGAACTCCCAACATTGGAAGGAGCCTAAGGTCAGGGGGAACTTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 72 bp | CCCCTGACCTTAGGCTCCTTCCAATGTTGGGAGTTCTaGGGAGATTCCTTCTTTGGAGCCCTCCAAGGACAA | + |
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Preference number: 6 (lower is better) Translates to: PLTLGSFQCWEF*GDSFFGALQGQ Trigger: TTGTCCTTGGAGGGCTCCAAAGAAGGAATCTCCCAAGAACTCCCAACATTGGAAGGAGCCTAAGGTCAGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | GTCAAGTTCCCCCTGACCTTAGGCTCCTTCCAATGTTGGGAGTTCTaGGGAGATTCCTTCTTTGGAGCCCTCCAAGGACAATATGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: VKFPLTLGSFQCWEF*GDSFFGALQGQYAG Trigger: GCCAGCATATTGTCCTTGGAGGGCTCCAAAGAAGGAATCTCCCAAGAACTCCCAACATTGGAAGGAGCCTAAGGTCAGGGGGAACTTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CAA 90 bp | CAGGTGATATGTCAAGTTCCCCCTGACCTTAGGCTCCTTCCAATGTaGGGAGTTCTTGGGAGATTCCTTCTTTGGAGCCCTCCAAGGACA | + |
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Preference number: 6 (lower is better) Translates to: QVICQVPPDLRLLPM*GVLGRFLLWSPPRT Trigger: TGTCCTTGGAGGGCTCCAAAGAAGGAATCTCCCAAGAACTCCCAACATTGGAAGGAGCCTAAGGTCAGGGGGAACTTGACATATCACCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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| CDS CCA 72 bp | AATGTGGGAGCTAATCGCCTACCATCTGGCTCCACTTaGTCTTCCAGGATGTCATCGATGTTGCGGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: NVGANRLPSGST*SSRMSSMLRFG Trigger: TCCAAACCGCAACATCGATGACATCCTGGAAGACCAAGTGGAGCCAGATGGTAGGCGATTAGCTCCCACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210169.2 |
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| CDS CAA 72 bp | TGTCAAGTTCCCCCTGACCTTAGGCTCCTTCCAATGTaGGGAGTTCTTGGGAGATTCCTTCTTTGGAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: CQVPPDLRLLPM*GVLGRFLLWSP Trigger: AGGGCTCCAAAGAAGGAATCTCCCAAGAACTCCCAACATTGGAAGGAGCCTAAGGTCAGGGGGAACTTGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148532.4 |
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