RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAMDC4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026941

Ensembl transcript IDs: ENSMUST00000095117.10, ENSMUST00000114223.8, ENSMUST00000152237.2

Found 355 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGCGCAGCCAGGCTGCCTaGCCCCCAGGACCTAGCACG +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQRSQAA*PPGPST
Trigger: CGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCG...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGAGGGGGCACCTGGCCTaGGGGATGGGTAGCCCACAG +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQRGHLA*GMGSPQ
Trigger: CTGTGGGCTACCCATCCCTCAGGCCAGGTGCCCCCT...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGCCCCAGGGGGCACCTaGCCTGAGGGATGGGTAGCC +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPAPGGT*PEGWVA
Trigger: GGCTACCCATCCCTCAGGCCAGGTGCCCCCTGGGGC...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGTGCCAGCGGTTGCCATaGGTGCCCGACCGGGACCAC +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQCQRLP*VPDRDH
Trigger: GTGGTCCCGGTCGGGCACCCATGGCAACCGCTGGCA...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCCCTGGTGCCAGCGGTTaGCATGGGTGCCCGACCGGG +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCPGASG*HGCPTG
Trigger: CCCGGTCGGGCACCCATGGCAACCGCTGGCACCAGG...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACCGCAGCCAGGCTGCCTaGCCCCCAGGACCTAGCACG +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDRSQAA*PPGPST
Trigger: CGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCG...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGAATGGGCCCCAGAGCTaGCTGGCCACCCAGAGTGGC +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQNGPQS*LATQSG
Trigger: GCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATT...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCGGCCCAGAGCAGGTGTaGGAGCCCGGGCCTCAGATC +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCGPEQV*EPGPQI
Trigger: GATCTGAGGCCCGGGCTCTCACACCTGCTCTGGGCC...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTCCTGGTGCCAGCGGTTaGCATGGGTGCCCGACCGGG +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAPGASG*HGCPTG
Trigger: CCCGGTCGGGCACCCATGGCAACCGCTGGCACCAGG...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGACTGGCAGTGGCTCACTaGGCAGCCAGGCTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRLAVAH*AARLPG
Trigger: GCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAG...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGAGCCCCAGGGGGCACCTaGCCTGAGGGATGGGTAGCC +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRAPGGT*PEGWVA
Trigger: GGCTACCCATCCCTCAGGCCAGGTGCCCCCTGGGGC...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGCAGCTTCCCTACACTaGTGTCCTCCCAGCCCCCAG +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPAASLH*CPPSPQ
Trigger: CTGGGGGCTGGGAGGACATCAGTGTAGGGAAGCTGC...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGCTCAGCCTGCACATTaGCGCTGCCCAGGCGCCAGG +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHAQPAH*RCPGAR
Trigger: CCTGGCGCCTGGGCAGCGTCAATGTGCAGGCTGAGC...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATCCGCCGCCTGGGGCTTaGCACAGCAGCTCCCGGAAG +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHPPPGA*HSSSRK
Trigger: CTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGG...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCATGGCCGGGGCAGTGCTaGTTCTGCAGCCAATGCCAG +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPWPGQC*FCSQCQ
Trigger: CTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCA...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCACTCTGGCCGGGGCAGTaGTGCTTCTGCAGCCAATGC +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPLWPGQ*CFCSQC
Trigger: GCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAG...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGAGGAACAGCTGGAAGTaGCTGGCCTCAGACCCGTGC +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQRNSWK*LASDPC
Trigger: GCACGGGTCTGAGGCCAGCCACTTCCAGCTGTTCCT...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTTGCCAGCGGTTGCCATaGGTGCCCGACCGGGACCAC +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCCQRLP*VPDRDH
Trigger: GTGGTCCCGGTCGGGCACCCATGGCAACCGCTGGCA...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGTCTGTGCCCAGGGTATaGTCCACTGAAGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQSVPRV*STEGWG
Trigger: CCCCCAGCCTTCAGTGGACCATACCCTGGGCACAGA...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACAGGGCTGCCTCACGCATaGCAGGAGAACGCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTGLPHA*QENAES
Trigger: CGACTCTGCGTTCTCCTGTCATGCGTGAGGCAGCCC...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTGCACTGTTGCGGCTGTaGTCTCGGTGGGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAALLRL*SRWGQA
Trigger: TGCCTGGCCCCACCGAGATCACAGCCGCAACAGTGC...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGCACTGTTGCGGCTGTaGTCTCGGTGGGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSALLRL*SRWGQA
Trigger: TGCCTGGCCCCACCGAGATCACAGCCGCAACAGTGC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATGGCCCAGAGCAGGTGTaGGAGCCCGGGCCTCAGATC +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHGPEQV*EPGPQI
Trigger: GATCTGAGGCCCGGGCTCTCACACCTGCTCTGGGCC...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACGCCAGTGGGCATCTGTaGGGTGGCCTGTATGCCAGC +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDASGHL*GGLYAS
Trigger: GCTGGCATACAGGCCACCTCACAGATGCCCACTGGC...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATTCACTGCCAGCTCCTaGCAGCCAGGGCCCCAGGGT +
Preference number: 4 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTFTASS*QPGPQG
Trigger: ACCCTGGGGCCCTGGCTGGCAGGAGCTGGCAGTGAA...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATTTCACTGCCAGCTCCTaGCAGCCAGGGCCCCAGGGT +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHFTASS*QPGPQG
Trigger: ACCCTGGGGCCCTGGCTGGCAGGAGCTGGCAGTGAA...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCAGGGCTCACCATGCTaGCAGCACTGTGGTTCCGGG +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCQGSPC*QHCGSG
Trigger: CCCGGAACCACAGTGCTGGCAGCATGGTGAGCCCTG...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATACAGGGCTCACCATGCTaGCAGCACTGTGGTTCCGGG +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIQGSPC*QHCGSG
Trigger: CCCGGAACCACAGTGCTGGCAGCATGGTGAGCCCTG...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATTGAGCCCCTGTGCCTaGAGGAACAGCTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: GTRTPLPFSITPEGKDTRLSPCA*RNSWKW
Trigger: CCACTTCCAGCTGTTCCTGCAGGCACAGGGGCTCAA...TCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGTGCCCCCAGGCCTTCTaGAGAGATAGGAAGTGCCCA +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQCPQAF*RDRKCP
Trigger: TGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCA...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGGTGACCCAAGCCTGGTaGCAGCGGTTGCCATGGGTG +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEVTQAW*QRLPWV
Trigger: CACCCATGGCAACCGCTGGCACCAGGCTTGGGTCAC...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGAGGCATTACTCTGGTaGGTCCACAGACCCCAGCCC +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPEALLW*VHRPQP
Trigger: GGGCTGGGGTCTGTGGACGCACCAGAGTAATGCCTC...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGGCCGGGGCAGTGCTaGTTCTGCAGCCAATGCCAG +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRWPGQC*FCSQCQ
Trigger: CTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCA...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGACTCTGGCCGGGGCAGTaGTGCTTCTGCAGCCAATGC +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRLWPGQ*CFCSQC
Trigger: GCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAG...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGAACCTGGCCTGAGGGATaGGTAGCCCACAGTCCCGGA +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRTWPEG*VAHSPG
Trigger: TCCGGGACTGTGGGCTACCCATCCCTCAGGCCAGGT...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGCAACAGGGCACCTTaGCCTCGAGCAGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDSNRAP*PRAGGS
Trigger: GGACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCT...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGCAGACCCCAGCCCCCTaGGGAGAAGCCACAGTCAGA +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEQTPAP*GEATVR
Trigger: TCTGACTGTGGCTTCTCCCCAGGGGGCTGGGGTCTG...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCGTCAGACAGGCAGGCTaGGACAGGGGCTGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCVRQAG*DRGWCS
Trigger: GGAACACCAGCCCCTGTCCCAGCCTGCCTGTCTGAC...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACAGTCAGACAGGCAGGCTaGGACAGGGGCTGGTGTTCC +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTVRQAG*DRGWCS
Trigger: GGAACACCAGCCCCTGTCCCAGCCTGCCTGTCTGAC...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCTGGGGGTAGCGGGATaGGGTGGCTCCACTACTCCA +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCLGVAG*GGSTTP
Trigger: TGGAGTAGTGGAGCCACCCCATCCCGCTACCCCCAG...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAAGGGGGCACCTGGCCTaGGGGATGGGTAGCCCACAG +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPRGHLA*GMGSPQ
Trigger: CTGTGGGCTACCCATCCCTCAGGCCAGGTGCCCCCT...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGCAGCTTCCCTACACTaGTGTCCTCCCAGCCCCCAG +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHAASLH*CPPSPQ
Trigger: CTGGGGGCTGGGAGGACATCAGTGTAGGGAAGCTGC...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGCACCTGAGGTCTTGTaGGCAACAGGGCACCTTGGC +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIAPEVL*ATGHLG
Trigger: GCCAAGGTGCCCTGTTGCTCACAAGACCTCAGGTGC...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGGGCTGGTGTTCCTCTaGAGTCAGAGCGGCCACATG +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIGLVFL*SQSGHM
Trigger: CATGTGGCCGCTCTGACTTCAGAGGAACACCAGCCC...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGCTCAGCCTGCACATTaGCGCTGCCCAGGCGCCAGG +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPAQPAH*RCPGAR
Trigger: CCTGGCGCCTGGGCAGCGTCAATGTGCAGGCTGAGC...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGGGTATGGTCCACTaGAGGCTGGGGGTAGCGGGA +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRQGMVH*RLGVAG
Trigger: TCCCGCTACCCCCAGCCTTCAGTGGACCATACCCTG...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCGAGGTGCTGATGTCCTaGCAGCCACAGGAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCEVLMS*QPQESC
Trigger: GCAGGACTCCTGTGGCTGGCAGGACATCAGCACCTC...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACACCGCCGCCTGGGGCTTaGCACAGCAGCTCCCGGAAG +
Preference number: 4 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTPPPGA*HSSSRK
Trigger: CTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGG...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACAGTGAGGTGGCCTGTATaGCAGCTGCAGGAGTCCCGT +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTVRWPV*QLQESR
Trigger: ACGGGACTCCTGCAGCTGGCATACAGGCCACCTCAC...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTGTGACCCAAGCCTGGTaGCAGCGGTTGCCATGGGTG +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCVTQAW*QRLPWV
Trigger: CACCCATGGCAACCGCTGGCACCAGGCTTGGGTCAC...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGGCATTACTCTGGTaGGTCCACAGACCCCAGCCC +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIEALLW*VHRPQP
Trigger: GGGCTGGGGTCTGTGGACGCACCAGAGTAATGCCTC...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACTGCTTCTGCAGCCAATaGCAGCCCCCAAGGCCCATG +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDCFCSQ*QPPRPM
Trigger: CATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCA...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCACAGCGCCCCTGTGTGTaGCATTTCGGGTGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPQRPCV*HFGWQK
Trigger: TTTCTGCCACCCGAAATGCCACACACAGGGGCGCTG...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACAATGCTGCCAGCACTGTaGTTCCGGGTCCAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTMLPAL*FRVQPS
Trigger: AGAGGGCTGGACCCGGAACCACAGTGCTGGCAGCAT...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACATGCTGCCAGCACTGTaGTTCCGGGTCCAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDMLPAL*FRVQPS
Trigger: AGAGGGCTGGACCCGGAACCACAGTGCTGGCAGCAT...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAAGGAACAGCTGGAAGTaGCTGGCCTCAGACCCGTGC +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIRNSWK*LASDPC
Trigger: GCACGGGTCTGAGGCCAGCCACTTCCAGCTGTTCCT...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGAGCCTGCAGGAACAGCTaGAAGTGGCTGGCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRACRNS*KWLASD
Trigger: GTCTGAGGCCAGCCACTTCCAGCTGTTCCTGCAGGC...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCGCCTGCAGGAACAGCTaGAAGTGGCTGGCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCACRNS*KWLASD
Trigger: GTCTGAGGCCAGCCACTTCCAGCTGTTCCTGCAGGC...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGAAGAGTGACCCAAGCCTaGTGCCAGCGGTTGCCATGG +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRRVTQA*CQRLPW
Trigger: CCATGGCAACCGCTGGCACCAGGCTTGGGTCACTCT...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCTGGGGGTAGCGGGATaGGGTGGCTCCACTACTCCA +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSLGVAG*GGSTTP
Trigger: TGGAGTAGTGGAGCCACCCCATCCCGCTACCCCCAG...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATACCACACAGCTAGCTaGCCTCGGGCACTGCTCAGG +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRYHTAS*PRALLR
Trigger: CCTGAGCAGTGCCCGAGGCCAGCTAGCTGTGTGGTA...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCACATCATCAATGGCAATaGGCCCCAGAGCTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPHHQWQ*APELAG
Trigger: GCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATG...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGATAGCCTGAGGTGCTaGTGTCCTGCCAGCCACAGG +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSDSLRC*CPASHR
Trigger: CCTGTGGCTGGCAGGACATCAGCACCTCAGGCTATC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTTGTCAACCCGGTCTCTaGCCCAGGCTGTCCCCAGTT +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSCQPGL*PRLSPV
Trigger: AACTGGGGACAGCCTGGGTCAGAGACCGGGTTGACA...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTGGGCTGGTGTTCCTCTaGAGTCAGAGCGGCCACATG +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAGLVFL*SQSGHM
Trigger: CATGTGGCCGCTCTGACTTCAGAGGAACACCAGCCC...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATTCACAGGAACCTGGCTaGGGACAGGGCCCATCTTGG +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHSQEPG*GQGPSW
Trigger: CCAAGATGGGCCCTGTCCTCAGCCAGGTTCCTGTGA...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGCGGCCAGTGTTCACTaGCAGCTCCTGCCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPAASVH*QLLPAR
Trigger: CCTGGCTGGCAGGAGCTGGCAGTGAACACTGGCCGC...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCCCTGGCTCACAGGTCTaGTGGGGCAGCTTGATGGAT +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCPGSQV*WGSLMD
Trigger: ATCCATCAAGCTGCCCCAGCAGACCTGTGAGCCAGG...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGTCGCCCTCTGCACAGTaGTTCTGGAAATCACACAGC +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQSPSAQ*FWKSHS
Trigger: GCTGTGTGATTTCCAGAAGCACTGTGCAGAGGGCGA...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCCATCCCCGGCAGGCTTaGTCTTCTCCTGGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCHPRQA*SSPGLQ
Trigger: TTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATG...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACCATCCCCGGCAGGCTTaGTCTTCTCCTGGGCTTCAA +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDHPRQA*SSPGLQ
Trigger: TTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATG...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGAGCCTCAGATCTTAGCTaGCCCCAGGCCTTCTGCAGA +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRASDLS*PQAFCR
Trigger: TCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGC...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACTCCACCACAACCAGTaGCAAGAAGCCTTGGGGGTG +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTLHHNQ*QEALGV
Trigger: CACCCCCAAGGCTTCTTGGCACTGGTTGTGGTGGAG...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCTCCACCACAACCAGTaGCAAGAAGCCTTGGGGGTG +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCLHHNQ*QEALGV
Trigger: CACCCCCAAGGCTTCTTGGCACTGGTTGTGGTGGAG...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACACTGGCAGTGGCTCACTaGGCAGCCAGGCTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTLAVAH*AARLPG
Trigger: GCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAG...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAAAAGCCAGAGGCTGCTaGATCTGTACTCCTCTGGCC +
Preference number: 4 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPKARGC*ICTPLA
Trigger: GGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTT...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGACTGTCTCAAAGTCAGTaGCCATGTGGTGGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: GTRTPLPFSITPEGKDTRLSQSQ*PCGGCR
Trigger: TCTGCAGCCACCACATGGCCACTGACTTTGAGACAG...TCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGTGTAGAGGACAGCAGTaGTGCCAGGCTTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKECRGQQ*CQAWPQ
Trigger: CTGTGGCCAAGCCTGGCACCACTGCTGTCCTCTACA...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCTTGGCCTCGAGCAGGTaGGTCCGTGGGATCCAAGAA +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCLASSR*VRGIQE
Trigger: TTCTTGGATCCCACGGACCCACCTGCTCGAGGCCAA...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATAGCAACAGGGCACCTTaGCCTCGAGCAGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHSNRAP*PRAGGS
Trigger: GGACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCT...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATTCCTTGGGGACAACTaGCACCTGAGGTCTTGTGAG +
Preference number: 4 (lower is better)
Translates to: GTRTPLPFSITPEGKDTRFLGDN*HLRSCE
Trigger: CTCACAAGACCTCAGGTGCCAGTTGTCCCCAAGGAA...TCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGAGAGTGACCCAAGCCTaGTGCCAGCGGTTGCCATGG +
Preference number: 4 (lower is better)
Translates to: AKVNMTQSLHPGPHVDSQRVTQA*CQRLPW
Trigger: CCATGGCAACCGCTGGCACCAGGCTTGGGTCACTCT...CTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCAGACCCCAGCCCCCTaGGGAGAAGCCACAGTCAGA +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVQTPAP*GEATVR
Trigger: TCTGACTGTGGCTTCTCCCCAGGGGGCTGGGGTCTG...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGACTTGGGCTGTCCCTGTaGTATGGTCTATCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: GTRTPLPFSITPEGKDTRLGLSL*YGLSKD
Trigger: GTCCTTGGATAGACCATACCACAGGGACAGCCCAAG...TCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGTCTGTGCCCAGGGTATaGTCCACTGAAGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: AKVNMTQSLHPGPHVDSQSVPRV*STEGWG
Trigger: CCCCCAGCCTTCAGTGGACCATACCCTGGGCACAGA...CTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGATACCACACAGCTAGCTaGCCTCGGGCACTGCTCAGG +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRYHTAS*PRALLR
Trigger: CCTGAGCAGTGCCCGAGGCCAGCTAGCTGTGTGGTA...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAATGGGCCCCAGAGCTaGCTGGCCACCCAGAGTGGC +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSNGPQS*LATQSG
Trigger: GCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATT...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACATGTGTATGGTCAGAATaGGGCCCAGGACCATGCAGC +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTCVWSE*GPGPCS
Trigger: GCTGCATGGTCCTGGGCCTCATTCTGACCATACACA...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGGCTGCCTCACGCATaGCAGGAGAACGCAGAGTCG +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPGLPHA*QENAES
Trigger: CGACTCTGCGTTCTCCTGTCATGCGTGAGGCAGCCC...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCGCAGTTGTTGGAGACTaGGCCTTGGAACTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCAVVGD*ALELRA
Trigger: AGCCCTGAGTTCCAAGGCTCAGTCTCCAACAACTGC...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACCCAAGTCCACCAGACTaGCAAACTCCAGCTGGAACG +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDPSPPD*QTPAGT
Trigger: CGTTCCAGCTGGAGTTTGTCAGTCTGGTGGACTTGG...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCGCCAGTGGGCATCTGTaGGGTGGCCTGTATGCCAGC +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSASGHL*GGLYAS
Trigger: GCTGGCATACAGGCCACCTCACAGATGCCCACTGGC...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGGCACCTGAGGTCTTGTaGGCAACAGGGCACCTTGGC +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVAPEVL*ATGHLG
Trigger: GCCAAGGTGCCCTGTTGCTCACAAGACCTCAGGTGC...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGCAGGGTATGGTCCACTaGAGGCTGGGGGTAGCGGGA +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQQGMVH*RLGVAG
Trigger: TCCCGCTACCCCCAGCCTTCAGTGGACCATACCCTG...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGGTGTTGAGCCCCTGTaGCTGCAGGAACAGCTGGAA +
Preference number: 4 (lower is better)
Translates to: AKVNMTQSLHPGPHVDSQGVEPL*LQEQLE
Trigger: TTCCAGCTGTTCCTGCAGGCACAGGGGCTCAACACC...CTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGAGGTGTTGAGCCCCTGTaGCTGCAGGAACAGCTGGAA +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRGVEPL*LQEQLE
Trigger: TTCCAGCTGTTCCTGCAGGCACAGGGGCTCAACACC...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGCCTCAGATCTTAGCTaGCCCCAGGCCTTCTGCAGA +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSASDLS*PQAFCR
Trigger: TCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACAGCAACTGGTACTTGGTaGTGGCCTCTGGCTGGTGAT +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTATGTW*WPLAGD
Trigger: ATCACCAGCCAGAGGCCAGCACCAAGTACCAGTTGC...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGGAAAGCAAAATGGCCTaGTTCTGTGCCCAGGGTATG +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQESKMA*FCAQGM
Trigger: CATACCCTGGGCACAGAAGCAGGCCATTTTGCTTTC...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGGCTTCTGCAGTGGTTaGGGAGCCAGGTCTTGCCTA +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSGFCSG*GARSCL
Trigger: TAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGAGGCTTCTGCAGTGGTTaGGGAGCCAGGTCTTGCCTA +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRGFCSG*GARSCL
Trigger: TAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCC...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCACCTGGCCTGAGGGATaGGTAGCCCACAGTCCCGGA +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSTWPEG*VAHSPG
Trigger: TCCGGGACTGTGGGCTACCCATCCCTCAGGCCAGGT...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGTAGAACAGGGACCTaGGGGGTGTTGAGCCCCTGT +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCSRTGT*GVLSPC
Trigger: ACAGGGGCTCAACACCCCCCAGGTCCCTGTTCTACT...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGGCTCACAGGTCTGCTaGGGCAGCTTGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHGSQVC*GSLMDV
Trigger: GACATCCATCAAGCTGCCCCAGCAGACCTGTGAGCC...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTGGCTCACAGGTCTGCTaGGGCAGCTTGATGGATGTC +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAGSQVC*GSLMDV
Trigger: GACATCCATCAAGCTGCCCCAGCAGACCTGTGAGCC...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGACTTGGTCACTTTCAGTaGTCACCATGGGGTTGCAGT +
Preference number: 4 (lower is better)
Translates to: GTRTPLPFSITPEGKDTRLGHFQ*SPWGCS
Trigger: ACTGCAACCCCATGGTGACCACTGAAAGTGACCAAG...TCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGCTTGGTCACTTTCAGTaGTCACCATGGGGTTGCAGT +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQLGHFQ*SPWGCS
Trigger: ACTGCAACCCCATGGTGACCACTGAAAGTGACCAAG...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTTTGGCCTCGAGCAGGTaGGTCCGTGGGATCCAAGAA +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCLASSR*VRGIQE
Trigger: TTCTTGGATCCCACGGACCCACCTGCTCGAGGCCAA...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCACAGCAACTGGTACTTaGTGCTGGCCTCTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCTATGT*CWPLAG
Trigger: ACCAGCCAGAGGCCAGCACCAAGTACCAGTTGCTGT...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTGGCTGGGACAGGGGCTaGTGTTCCTCTGAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAGWDRG*CSSEVR
Trigger: TCTGACTTCAGAGGAACACCAGCCCCTGTCCCAGCC...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGGCTGGGACAGGGGCTaGTGTTCCTCTGAAGTCAGA +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSGWDRG*CSSEVR
Trigger: TCTGACTTCAGAGGAACACCAGCCCCTGTCCCAGCC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCAAAGTCACAGGAACCTaGCTGAGGACAGGGCCCATC +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCKVTGT*LRTGPI
Trigger: GATGGGCCCTGTCCTCAGCCAGGTTCCTGTGACTTT...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGAAACAGGACCCAGGTTaGAAGAAGGTGGCTAGGCAG +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEKQDPG*KKVARQ
Trigger: CTGCCTAGCCACCTTCTTTCAACCTGGGTCCTGTTT...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCTGTGGTGGCTGCAGATaGGTGGGTCTTCATCAGATC +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCCGGCR*VGLHQI
Trigger: GATCTGATGAAGACCCACTCATCTGCAGCCACCACA...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGCCAAGAAGCAAGGCCTaGGGCATTACTCTGGTGCGT +
Preference number: 4 (lower is better)
Translates to: AKVNMTQSLHPGPHVDSQPRSKA*GITLVR
Trigger: ACGCACCAGAGTAATGCCTCAGGCCTTGCTTCTTGG...CTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCCAAGAAGCAAGGCCTaGGGCATTACTCTGGTGCGT +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSPRSKA*GITLVR
Trigger: ACGCACCAGAGTAATGCCTCAGGCCTTGCTTCTTGG...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTTGGAAATCACACAGCTaGTCAGGGGGCACACACAGG +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCWKSHS*SGGTHR
Trigger: CCTGTGTGTGCCCCCTGAGCAGCTGTGTGATTTCCA...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCTGCAGAGATAGGAAGTaGCCAGGAGCATCCCGATTG +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCCRDRK*PGASRL
Trigger: CAATCGGGATGCTCCTGGGCACTTCCTATCTCTGCA...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGTGAGGTGGCCTGTATaGCAGCTGCAGGAGTCCCGT +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPVRWPV*QLQESR
Trigger: ACGGGACTCCTGCAGCTGGCATACAGGCCACCTCAC...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGCAACTGGTACTTGGTaGTGGCCTCTGGCTGGTGAT +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSATGTW*WPLAGD
Trigger: ATCACCAGCCAGAGGCCAGCACCAAGTACCAGTTGC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGTGTCCAGCCAGGTACTaGACATCATCAATGGCAATG +
Preference number: 4 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQCPARY*TSSMAM
Trigger: CATTGCCATTGATGATGTGCAGTACCTGGCTGGACA...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTGCTTCTGCAGCCAATaGCAGCCCCCAAGGCCCATG +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQCFCSQ*QPPRPM
Trigger: CATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCA...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACAAAAGCCAGAGGCTGCTaGATCTGTACTCCTCTGGCC +
Preference number: 4 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTKARGC*ICTPLA
Trigger: GGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTT...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTGGCTCCTTCCCACTGTaGGTTCCCACAGCCATATAC +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCGSFPL*VPTAIY
Trigger: GTATATGGCTGTGGGAACCCACAGTGGGAAGGAGCC...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCAGCGCCCCTGTGTGTaGCATTTCGGGTGGCAGAAA +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVQRPCV*HFGWQK
Trigger: TTTCTGCCACCCGAAATGCCACACACAGGGGCGCTG...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACTGTCTCAAAGTCAGTaGCCATGTGGTGGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTLSQSQ*PCGGCR
Trigger: TCTGCAGCCACCACATGGCCACTGACTTTGAGACAG...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATAGTAGAACAGGGACCTaGGGGGTGTTGAGCCCCTGT +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHSRTGT*GVLSPC
Trigger: ACAGGGGCTCAACACCCCCCAGGTCCCTGTTCTACT...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGAGTCCCCAGTTCTCCATaGCGGCTTCGAAGTAGAACA +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRVPSSP*RLRSRT
Trigger: TGTTCTACTTCGAAGCCGCCATGGAGAACTGGGGAC...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGTCCCCAGTTCTCCATaGCGGCTTCGAAGTAGAACA +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIVPSSP*RLRSRT
Trigger: TGTTCTACTTCGAAGCCGCCATGGAGAACTGGGGAC...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACCAGGGTGGACATAGCTaGAACAAGCATGCAGTGGCT +
Preference number: 4 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDQGGHS*NKHAVA
Trigger: AGCCACTGCATGCTTGTTCCAGCTATGTCCACCCTG...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATTCCTTGGGGACAACTaGCACCTGAGGTCTTGTGAG +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRFLGDN*HLRSCE
Trigger: CTCACAAGACCTCAGGTGCCAGTTGTCCCCAAGGAA...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCTTGGTGCTGGCCTCTaGCTGGTGATGAAGAGTGAC +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSLGAGL*LVMKSD
Trigger: GTCACTCTTCATCACCAGCCAGAGGCCAGCACCAAG...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACTTGGTGCTGGCCTCTaGCTGGTGATGAAGAGTGAC +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRLGAGL*LVMKSD
Trigger: GTCACTCTTCATCACCAGCCAGAGGCCAGCACCAAG...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAACTGGTACTTGGTGCTaGCCTCTGGCTGGTGATGAA +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQITGTWC*PLAGDE
Trigger: TTCATCACCAGCCAGAGGCCAGCACCAAGTACCAGT...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACTTGGGCTGTCCCTGTaGTATGGTCTATCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTLGLSL*YGLSKD
Trigger: GTCCTTGGATAGACCATACCACAGGGACAGCCCAAG...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATACTTGGGCAGTACATTTaGGCTGGTGTCCACCACCAT +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQILGQYI*AGVHHH
Trigger: ATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAG...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGCTTGGGCAGTACATTTaGGCTGGTGTCCACCACCAT +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKELGQYI*AGVHHH
Trigger: ATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAG...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATAAACAGGACCCAGGTTaGAAGAAGGTGGCTAGGCAG +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHKQDPG*KKVARQ
Trigger: CTGCCTAGCCACCTTCTTTCAACCTGGGTCCTGTTT...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTGGTGGCTGCAGATaGGTGGGTCTTCATCAGATC +
Preference number: 4 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTCGGCR*VGLHQI
Trigger: GATCTGATGAAGACCCACTCATCTGCAGCCACCACA...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATGGCGGTACCAGAAGCTaGGACATTCCTTGGGGACAA +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHGGTRS*DIPWGQ
Trigger: TTGTCCCCAAGGAATGTCTCAGCTTCTGGTACCGCC...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCACAGGAACCTGGCTaGGGACAGGGCCCATCTTGG +
Preference number: 4 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTSQEPG*GQGPSW
Trigger: CCAAGATGGGCCCTGTCCTCAGCCAGGTTCCTGTGA...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp CAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTAGAGGTGCTGATGTCCTaGCAGCCACAGGAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: QRHQIEKELAKVNMTQSLEVLMS*QPQESC
Trigger: GCAGGACTCCTGTGGCTGGCAGGACATCAGCACCTC...TAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGAGAGGACAGCAGTGGTaGCAGGCTTGGCCACAGAGA +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQRGQQW*QAWPQR
Trigger: TCTCTGTGGCCAAGCCTGGCACCACTGCTGTCCTCT...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTTGAGCCCCTGTGCCTaGAGGAACAGCTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQLSPCA*RNSWKW
Trigger: CCACTTCCAGCTGTTCCTGCAGGCACAGGGGCTCAA...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGAAAGTGATGACTaGAGGGTGGACATAGCTGGA +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTPESDD*RVDIAG
Trigger: TCCAGCTATGTCCACCCTGCAGTCATCACTTTCTGG...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCCAGAAAGTGATGACTaGAGGGTGGACATAGCTGGA +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCPESDD*RVDIAG
Trigger: TCCAGCTATGTCCACCCTGCAGTCATCACTTTCTGG...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCCCTGGCTCACAGGTCTaGTGGGGCAGCTTGATGGAT +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSPGSQV*WGSLMD
Trigger: ATCCATCAAGCTGCCCCAGCAGACCTGTGAGCCAGG...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGTGGAAATCACACAGCTaGTCAGGGGGCACACACAGG +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVWKSHS*SGGTHR
Trigger: CCTGTGTGTGCCCCCTGAGCAGCTGTGTGATTTCCA...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATCGCCCTCTGCACAGTaGTTCTGGAAATCACACAGC +
Preference number: 4 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTSPSAQ*FWKSHS
Trigger: GCTGTGTGATTTCCAGAAGCACTGTGCAGAGGGCGA...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGCAGAGATAGGAAGTaGCCAGGAGCATCCCGATTG +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGACRDRK*PGASRL
Trigger: CAATCGGGATGCTCCTGGGCACTTCCTATCTCTGCA...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTGCCCCCAGGCCTTCTaGAGAGATAGGAAGTGCCCA +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQCPQAF*RDRKCP
Trigger: TGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCA...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTGTAGAGGACAGCAGTaGTGCCAGGCTTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQCRGQQ*CQAWPQ
Trigger: CTGTGGCCAAGCCTGGCACCACTGCTGTCCTCTACA...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTACTGGTACTTGGTGCTaGCCTCTGGCTGGTGATGAA +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCTGTWC*PLAGDE
Trigger: TTCATCACCAGCCAGAGGCCAGCACCAAGTACCAGT...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGACAGCAACTGGTACTTaGTGCTGGCCTCTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVTATGT*CWPLAG
Trigger: ACCAGCCAGAGGCCAGCACCAAGTACCAGTTGCTGT...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTTTGGGGACGCTCATGTaGTACCAGAAGGTCAGACAG +
Preference number: 4 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSLGTLM*YQKVRQ
Trigger: CTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAA...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGGCAGATCTACCATaGGCACTGATGCTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRQADLP*ALMLSS
Trigger: AGAGCTCAGCATCAGTGCCCATGGTAGATCTGCCTG...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGGGACAGGGCCCATCTTaGAGGGAAATGTCATCTAGA +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEGQGPS*REMSSR
Trigger: TCTAGATGACATTTCCCTCCAAGATGGGCCCTGTCC...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGAGCTGGCCACCCAGAGTaGCTTCAAAAACAATCTGGA +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRAGHPE*LQKQSG
Trigger: TCCAGATTGTTTTTGAAGCCACTCTGGGTGGCCAGC...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGACCATGGAAACCACACTaGGTTTCGTCTGAACAGTCT +
Preference number: 4 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRPWKPH*VSSEQS
Trigger: AGACTGTTCAGACGAAACTCAGTGTGGTTTCCATGG...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGCAGTTGTTGGAGACTaGGCCTTGGAACTCAGGGCT +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPAVVGD*ALELRA
Trigger: AGCCCTGAGTTCCAAGGCTCAGTCTCCAACAACTGC...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCCCAAGTCCACCAGACTaGCAAACTCCAGCTGGAACG +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSPSPPD*QTPAGT
Trigger: CGTTCCAGCTGGAGTTTGTCAGTCTGGTGGACTTGG...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACATGGGATCCAAGAACATaGAAAAGCCTTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTWDPRT*KSLGQL
Trigger: CAACTGGCCAAGGCTTTTTCATGTTCTTGGATCCCA...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCGGCGGTACCAGAAGCTaGGACATTCCTTGGGGACAA +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSGGTRS*DIPWGQ
Trigger: TTGTCCCCAAGGAATGTCTCAGCTTCTGGTACCGCC...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTTCAACCCATTGCCACTaGAGCTTCCCTACACTGATG +
Preference number: 4 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCSTHCH*SFPTLM
Trigger: CATCAGTGTAGGGAAGCTGCAGTGGCAATGGGTTGA...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGGGCTCCTTCCCACTGTaGGTTCCCACAGCCATATAC +
Preference number: 4 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQGSFPL*VPTAIY
Trigger: GTATATGGCTGTGGGAACCCACAGTGGGAAGGAGCC...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTACTTTGAAGTCACCCTaGATGCGGCCAGTGTTCACT +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGATLKSP*MRPVFT
Trigger: AGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGT...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGGAACAAGCATGCAGTaGCTAGACATGATAAGGTCG +
Preference number: 4 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIGTSMQ*LDMIRS
Trigger: CGACCTTATCATGTCTAGCCACTGCATGCTTGTTCC...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCAGGGTGGACATAGCTaGAACAAGCATGCAGTGGCT +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVQGGHS*NKHAVA
Trigger: AGCCACTGCATGCTTGTTCCAGCTATGTCCACCCTG...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCTCTGCACAGTGCTTCTaGAAATCACACAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCSAQCF*KSHSCS
Trigger: TGAGCAGCTGTGTGATTTCCAGAAGCACTGTGCAGA...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGTCTGCACAGTGCTTCTaGAAATCACACAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKESAQCF*KSHSCS
Trigger: TGAGCAGCTGTGTGATTTCCAGAAGCACTGTGCAGA...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATTTCAGTGGTCACCATaGGGTTGCAGTCTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTFQWSP*GCSLSE
Trigger: CTCTGAGAGACTGCAACCCCATGGTGACCACTGAAA...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCTCAAAGAAAGCAAAATaGCCTGCTTCTGTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LHPGPHVDSQVLVRFRCCSKKAK*PASVPR
Trigger: CCTGGGCACAGAAGCAGGCCATTTTGCTTTCTTTGA...GCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGGATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGAGCTGGCCACCCAGAGTaGCTTCAAAAACAATCTGGA +
Preference number: 4 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRAGHPE*LQKQSG
Trigger: TCCAGATTGTTTTTGAAGCCACTCTGGGTGGCCAGC...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCATCAATGGCAATaGGCCCCAGAGCTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: QRHQIEKELAKVNMTQSLHHQWQ*APELAG
Trigger: GCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATG...TAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGTCAACCCATTGCCACTaGAGCTTCCCTACACTGATG +
Preference number: 4 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVSTHCH*SFPTLM
Trigger: CATCAGTGTAGGGAAGCTGCAGTGGCAATGGGTTGA...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTGTCCAGCCAGGTACTaGACATCATCAATGGCAATG +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGACPARY*TSSMAM
Trigger: CATTGCCATTGATGATGTGCAGTACCTGGCTGGACA...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGGAACAAGCATGCAGTaGCTAGACATGATAAGGTCG +
Preference number: 4 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHGTSMQ*LDMIRS
Trigger: CGACCTTATCATGTCTAGCCACTGCATGCTTGTTCC...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATCAAAGAAAGCAAAATaGCCTGCTTCTGTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTSKKAK*PASVPR
Trigger: CCTGGGCACAGAAGCAGGCCATTTTGCTTTCTTTGA...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATTGGGATCCAAGAACATaGAAAAGCCTTGGCCAGTTG +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHWDPRT*KSLGQL
Trigger: CAACTGGCCAAGGCTTTTTCATGTTCTTGGATCCCA...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCTTTCAGTGGTCACCATaGGGTTGCAGTCTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSFQWSP*GCSLSE
Trigger: CTCTGAGAGACTGCAACCCCATGGTGACCACTGAAA...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATTGGGGACGCTCATGTaGTACCAGAAGGTCAGACAG +
Preference number: 4 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTLGTLM*YQKVRQ
Trigger: CTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAA...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACAGGCAGATCTACCATaGGCACTGATGCTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: QRHQIEKELAKVNMTQSLQADLP*ALMLSS
Trigger: AGAGCTCAGCATCAGTGCCCATGGTAGATCTGCCTG...TAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR GCA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACAGAAAGCAAAATGGCCTaGTTCTGTGCCCAGGGTATG +
Preference number: 4 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTESKMA*FCAQGM
Trigger: CATACCCTGGGCACAGAAGCAGGCCATTTTGCTTTC...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTAGGACAGGGCCCATCTTaGAGGGAAATGTCATCTAGA +
Preference number: 4 (lower is better)
Translates to: QRHQIEKELAKVNMTQSLGQGPS*REMSSR
Trigger: TCTAGATGACATTTCCCTCCAAGATGGGCCCTGTCC...TAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTGCTTCAAAAACAATCTaGAACTCCTCAGAGTTGGAC +
Preference number: 4 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAASKTI*NSSELD
Trigger: GTCCAACTCTGAGGAGTTCCAGATTGTTTTTGAAGC...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp GCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGCTTCAAAAACAATCTaGAACTCCTCAGAGTTGGAC +
Preference number: 4 (lower is better)
Translates to: AKVNMTQSLHPGPHVDSQASKTI*NSSELD
Trigger: GTCCAACTCTGAGGAGTTCCAGATTGTTTTTGAAGC...CTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR TCA 90 bp CAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACCATGGAAACCACACTaGGTTTCGTCTGAACAGTCT +
Preference number: 4 (lower is better)
Translates to: QRHQIEKELAKVNMTQSLPWKPH*VSSEQS
Trigger: AGACTGTTCAGACGAAACTCAGTGTGGTTTCCATGG...TAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCCATCAGGACCTAGCACGCTaGTTTCAAAGAAAGCAAAAT +
Preference number: 4 (lower is better)
Translates to: PHVDSQVLVRFRCCKRCHQDLAR*FQRKQN
Trigger: ATTTTGCTTTCTTTGAAACCAGCGTGCTAGGTCCTG...ATGGCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CCA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCACAGGACCTAGCACGCTaGTTTCAAAGAAAGCAAAAT +
Preference number: 4 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPQDLAR*FQRKQN
Trigger: ATTTTGCTTTCTTTGAAACCAGCGTGCTAGGTCCTG...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 90 bp GAGGGGCCCAGAGCAGGTGTGAGAGCCCGGGCCTCAGATCTTAGCTaGCCCCAGGCCTTCTGCAGAGATAGGAAGTGCCCAGGAGCATCC +
Preference number: 5 (lower is better)
Translates to: EGPRAGVRARASDLS*PQAFCRDRKCPGAS
Trigger: GGATGCTCCTGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGCCCGGGCTCTCACACCTGCTCTGGGCCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp AAGCCAGAGGCTGCTGCATCTGTACTCCTCTGGCCGGGGCAGTGCTaGTTCTGCAGCCAATGCCAGCCCCCAAGGCCCATGAGCACCAGG +
Preference number: 5 (lower is better)
Translates to: KPEAAASVLLWPGQC*FCSQCQPPRPMSTR
Trigger: CCTGGTGCTCATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp GCAAAGCCAGAGGCTGCTGCATCTGTACTCCTCTGGCCGGGGCAGTaGTGCTTCTGCAGCCAATGCCAGCCCCCAAGGCCCATGAGCACC +
Preference number: 5 (lower is better)
Translates to: AKPEAAASVLLWPGQ*CFCSQCQPPRPMST
Trigger: GGTGCTCATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp TCCCCGGCAGGCTTGCTCTTCTCCTGGGCTTCAACCCATTGCCACTaGAGCTTCCCTACACTGATGTCCTCCCAGCCCCCAGCAGAGGCG +
Preference number: 5 (lower is better)
Translates to: SPAGLLFSWASTHCH*SFPTLMSSQPPAEA
Trigger: CGCCTCTGCTGGGGGCTGGGAGGACATCAGTGTAGGGAAGCTGCAGTGGCAATGGGTTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp ATAATCTTCTCCTCTGTCCAGCTCCCGCTGCCGCCGCCTGGGGCTTaGCACAGCAGCTCCCGGAAGCCATTCTCCACCACAACCAGTGCC +
Preference number: 5 (lower is better)
Translates to: IIFSSVQLPLPPPGA*HSSSRKPFSTTTSA
Trigger: GGCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 90 bp CAAGTCCACCAGACTGACAAACTCCAGCTGGAACGGCCGGCGCCGTaGCCCGAGAATAATCTTCTCCTCTGTCCAGCTCCCGCTGCCGCC +
Preference number: 5 (lower is better)
Translates to: QVHQTDKLQLERPAP*PENNLLLCPAPAAA
Trigger: GGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAGCTGGAGTTTGTCAGTCTGGTGGACTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 90 bp ACCAGAAGCGGAGGCATGAGACTGTTGTTGCTGGCAGTGGCTCACTaGGCAGCCAGGCTGCCTGGCCCCCAGGACCTAGCACGCTGGTTT +
Preference number: 5 (lower is better)
Translates to: TRSGGMRLLLLAVAH*AARLPGPQDLARWF
Trigger: AAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp TGTTCTGGCAGTGGTGATGCCCCAGGGGGCACCTGGCCTGAGGGATaGGTAGCCCACAGTCCCGGAACTCCACATCATCCAAGGCCACAG +
Preference number: 5 (lower is better)
Translates to: CSGSGDAPGGTWPEG*VAHSPGTPHHPRPQ
Trigger: CTGTGGCCTTGGATGATGTGGAGTTCCGGGACTGTGGGCTACCCATCCCTCAGGCCAGGTGCCCCCTGGGGCATCACCACTGCCAGAACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp CCCGAGAATAATCTTCTCCTCTGTCCAGCTCCCGCTGCCGCCGCCTaGGGCTTGCCACAGCAGCTCCCGGAAGCCATTCTCCACCACAAC +
Preference number: 5 (lower is better)
Translates to: PENNLLLCPAPAAAA*GLPQQLPEAILHHN
Trigger: GTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTATTCTCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS TCA 90 bp CCCAGGCGCCAGGCAGATCTACCATGGGCACTGATGCTGAGCTCTTaGCGCCTTGTGCTCTCTTCCACGTGGACCCTCAAGGTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: PRRQADLPWALMLSS*RLVLSSTWTLKVPG
Trigger: TCCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTCAAGAGCTCAGCATCAGTGCCCATGGTAGATCTGCCTGGCGCCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp TTGGCATCCCCGGCAGGCTTGCTCTTCTCCTGGGCTTCAACCCATTaGCACTGCAGCTTCCCTACACTGATGTCCTCCCAGCCCCCAGCA +
Preference number: 5 (lower is better)
Translates to: LASPAGLLFSWASTH*HCSFPTLMSSQPPA
Trigger: TGCTGGGGGCTGGGAGGACATCAGTGTAGGGAAGCTGCAGTGGCAATGGGTTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp GCCTCAGATCTTAGCTGCCCCCAGGCCTTCTGCAGAGATAGGAAGTaGCCAGGAGCATCCCGATTGGCATCCCCGGCAGGCTTGCTCTTC +
Preference number: 5 (lower is better)
Translates to: ASDLSCPQAFCRDRK*PGASRLASPAGLLF
Trigger: GAAGAGCAAGCCTGCCGGGGATGCCAATCGGGATGCTCCTGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp CCCTGGCTAGGTGAAGGCTGCTTGCACTGTTGTCCAGCCAGGTACTaGACATCATCAATGGCAATGGGCCCCAGAGCTGGCTGGCCACCC +
Preference number: 5 (lower is better)
Translates to: PWLGEGCLHCCPARY*TSSMAMGPRAGWPP
Trigger: GGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAGCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp CTCACCATGCTGCCAGCACTGTGGTTCCGGGTCCAGCCCTCTAACTaGTTCCACGGTCCCAGGCCTGTCTCAAAGTCAGTGGCCATGTGG +
Preference number: 5 (lower is better)
Translates to: LTMLPALWFRVQPSN*FHGPRPVSKSVAMW
Trigger: CCACATGGCCACTGACTTTGAGACAGGCCTGGGACCGTGGAACCAGTTAGAGGGCTGGACCCGGAACCACAGTGCTGGCAGCATGGTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp TGCTGGCCAGGGCCATCCAAGTCCACCAGACTGACAAACTCCAGCTaGAACGGCCGGCGCCGTGCCCCGAGAATAATCTTCTCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: CWPGPSKSTRLTNSS*NGRRRAPRIIFSSV
Trigger: GACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAGCTGGAGTTTGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 90 bp TCTTCCTCCCGCTCCCTCCTCATGGCCAGGCACAGTGTCCCAATCTaGGGCCCATACAGGCGGTACCAGAAGCTGAGACATTCCTTGGGG +
Preference number: 5 (lower is better)
Translates to: SSSRSLLMARHSVPI*GPYRRYQKLRHSLG
Trigger: CCCCAAGGAATGTCTCAGCTTCTGGTACCGCCTGTATGGGCCCCAGATTGGGACACTGTGCCTGGCCATGAGGAGGGAGCGGGAGGAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp GACGCCTTGTGCTCTCTTCCACGTGGACCCTCAAGGTGCCTGGATTaGGGACGCTCATGTGGTACCAGAAGGTCAGACAGGCAGGCTGGG +
Preference number: 5 (lower is better)
Translates to: DALCSLPRGPSRCLD*GRSCGTRRSDRQAG
Trigger: CCCAGCCTGCCTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAATCCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 90 bp CAGGGCTGTAGAGGACAGCAGTGGTGCCAGGCTTGGCCACAGAGATaGGGAAGAAGCCGTATGCACTGTTGCGGCTGTGATCTCGGTGGG +
Preference number: 5 (lower is better)
Translates to: QGCRGQQWCQAWPQR*GRSRMHCCGCDLGG
Trigger: CCCACCGAGATCACAGCCGCAACAGTGCATACGGCTTCTTCCTCATCTCTGTGGCCAAGCCTGGCACCACTGCTGTCCTCTACAGCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp CCCAGCAGGGGCCAGGCCGCACAGCTATGTCATCCAGGGCCATTGTaGCATGGTACCCATTCCGGAGGCCTTCAAACAGCAACTGGTACT +
Preference number: 5 (lower is better)
Translates to: PSRGQAAQLCHPGPL*HGTHSGGLQTATGT
Trigger: AGTACCAGTTGCTGTTTGAAGGCCTCCGGAATGGGTACCATGGCACAATGGCCCTGGATGACATAGCTGTGCGGCCTGGCCCCTGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp TGGGTCAGGTCCAGCCGCAGCTCAGCGACATCTCTAGAGGCAATGTaGTACCAGAGCCTCAGTTCACAGGTAGGGGCTGCCTCACGCATG +
Preference number: 5 (lower is better)
Translates to: WVRSSRSSATSLEAM*YQSLSSQVGAASRM
Trigger: CATGCGTGAGGCAGCCCCTACCTGTGAACTGAGGCTCTGGTACCACATTGCCTCTAGAGATGTCGCTGAGCTGCGGCTGGACCTGACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp AAGAGGATATTGGCAAAGCCAGAGGCTGCTGCATCTGTACTCCTCTaGCCGGGGCAGTGCTGCTTCTGCAGCCAATGCCAGCCCCCAAGG +
Preference number: 5 (lower is better)
Translates to: KRILAKPEAAASVLL*PGQCCFCSQCQPPR
Trigger: CCTTGGGGGCTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS-3UTR CAA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGCCGCCGCCTGGGGCTaGCCACAGCAGCTCCCGGAA +
Preference number: 5 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSAAAWG*PQQLPE
Trigger: TTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS TCA 90 bp CAGCGCCCCTGTGTGTGGCATTTCGGGTGGCAGAAAATGTCACTTTaGAGTCACCCTGGATGCGGCCAGTGTTCACTGCCAGCTCCTGCC +
Preference number: 5 (lower is better)
Translates to: QRPCVWHFGWQKMSL*SHPGCGQCSLPAPA
Trigger: GGCAGGAGCTGGCAGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGCCACCCGAAATGCCACACACAGGGGCGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 90 bp TCTTCTCCTGGGCTTCAACCCATTGCCACTGCAGCTTCCCTACACTaGTGTCCTCCCAGCCCCCAGCAGAGGCGGACTCAAAGTCTGTGG +
Preference number: 5 (lower is better)
Translates to: SSPGLQPIATAASLH*CPPSPQQRRTQSLW
Trigger: CCACAGACTTTGAGTCCGCCTCTGCTGGGGGCTGGGAGGACATCAGTGTAGGGAAGCTGCAGTGGCAATGGGTTGAAGCCCAGGAGAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp CTCTTGACGCCTTGTGCTCTCTTCCACGTGGACCCTCAAGGTGCCTaGATTGGGGACGCTCATGTGGTACCAGAAGGTCAGACAGGCAGG +
Preference number: 5 (lower is better)
Translates to: LLTPCALFHVDPQGA*IGDAHVVPEGQTGR
Trigger: CCTGCCTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAATCCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp GAGACTGTTGTTGCTGGCAGTGGCTCACTGCGCAGCCAGGCTGCCTaGCCCCCAGGACCTAGCACGCTGGTTTCAAAGAAAGCAAAATGG +
Preference number: 5 (lower is better)
Translates to: ETVVAGSGSLRSQAA*PPGPSTLVSKKAKW
Trigger: CCATTTTGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS-3UTR CAA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGGCATCCCCGGCAGGCTaGCTCTTCTCCTGGGCTTCA +
Preference number: 5 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQASPAG*LFSWAS
Trigger: TGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGC...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 90 bp TGTTCATCCTCGCCCTCTGCACAGTGCTTCTGGAAATCACACAGCTaGTCAGGGGGCACACACAGGTCACCACAGGAGAGATGTCCTGGC +
Preference number: 5 (lower is better)
Translates to: CSSSPSAQCFWKSHS*SGGTHRSPQERCPG
Trigger: GCCAGGACATCTCTCCTGTGGTGACCTGTGTGTGCCCCCTGAGCAGCTGTGTGATTTCCAGAAGCACTGTGCAGAGGGCGAGGATGAACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp GTGGTGCCACACTTGTGTTCATCCTCGCCCTCTGCACAGTGCTTCTaGAAATCACACAGCTGCTCAGGGGGCACACACAGGTCACCACAG +
Preference number: 5 (lower is better)
Translates to: VVPHLCSSSPSAQCF*KSHSCSGGTHRSPQ
Trigger: CTGTGGTGACCTGTGTGTGCCCCCTGAGCAGCTGTGTGATTTCCAGAAGCACTGTGCAGAGGGCGAGGATGAACACAAGTGTGGCACCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp CTGAAGTCAGAGCGGCCACATGACCCTTGGGCAGTACATTTGGGCTaGTGTCCACCACCATGTAGTGCCCTTGGGCTGTCCCTGTGGTAT +
Preference number: 5 (lower is better)
Translates to: LKSERPHDPWAVHLG*CPPPCSALGLSLWY
Trigger: ATACCACAGGGACAGCCCAAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAGGGTCATGTGGCCGCTCTGACTTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp ACAGGGGCTGGTGTTCCTCTGAAGTCAGAGCGGCCACATGACCCTTaGGCAGTACATTTGGGCTGGTGTCCACCACCATGTAGTGCCCTT +
Preference number: 5 (lower is better)
Translates to: TGAGVPLKSERPHDP*AVHLGWCPPPCSAL
Trigger: AAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAGGGTCATGTGGCCGCTCTGACTTCAGAGGAACACCAGCCCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp AAGGCTGCTTGCACTGTTGTCCAGCCAGGTACTGCACATCATCAATaGCAATGGGCCCCAGAGCTGGCTGGCCACCCAGAGTGGCTTCAA +
Preference number: 5 (lower is better)
Translates to: KAACTVVQPGTAHHQ*QWAPELAGHPEWLQ
Trigger: TTGAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS-3UTR CAA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGGCCGCCGCCTGGGGCTaGCCACAGCAGCTCCCGGAA +
Preference number: 5 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQAAAWG*PQQLPE
Trigger: TTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGC...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS TCA 90 bp CACCACAGGAGAGATGTCCTGGCTCACAGGTCTGCTGGGGCAGCTTaGTGGATGTCTGGGGATAGAGGGCTAATGGCACAGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: HHRRDVLAHRSAGAA*WMSGDRGLMAQVQK
Trigger: TTTCTGGACCTGTGCCATTAGCCCTCTATCCCCAGACATCCATCAAGCTGCCCCAGCAGACCTGTGAGCCAGGACATCTCTCCTGTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 90 bp GTAGAAATGCTCAGGAAAGCCCATGTAGTACCAGAAGCGGAGGCATaGGACTGTTGTTGCTGGCAGTGGCTCACTGCGCAGCCAGGCTGC +
Preference number: 5 (lower is better)
Translates to: VEMLRKAHVVPEAEA*DCCCWQWLTAQPGC
Trigger: GCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTGAGCATTTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp CCTTCCCACTGTGGGTTCCCACAGCCATATACCAGCCCAAGTCAGTaGCATGTGTATGGTCAGAATGAGGCCCAGGACCATGCAGCACTG +
Preference number: 5 (lower is better)
Translates to: PSHCGFPQPYTSPSQ*HVYGQNEAQDHAAL
Trigger: CAGTGCTGCATGGTCCTGGGCCTCATTCTGACCATACACATGGCACTGACTTGGGCTGGTATATGGCTGTGGGAACCCACAGTGGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp TCTAGAGGCAATGTGGTACCAGAGCCTCAGTTCACAGGTAGGGGCTaGCTCACGCATGACAGGAGAACGCAGAGTCGCAGTAGATGGCTC +
Preference number: 5 (lower is better)
Translates to: SRGNVVPEPQFTGRG*LTHDRRTQSRSRWL
Trigger: GAGCCATCTACTGCGACTCTGCGTTCTCCTGTCATGCGTGAGGCAGCCCCTACCTGTGAACTGAGGCTCTGGTACCACATTGCCTCTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp CAGTCACACACAAAGTTGCATACAGCTTTGATGGGGCTTCTGCAGTaGTTGGGGAGCCAGGTCTTGCCTAGCGACTGTGCAGCTGGCAGG +
Preference number: 5 (lower is better)
Translates to: QSHTKLHTALMGLLQ*LGSQVLPSDCAAGR
Trigger: CCTGCCAGCTGCACAGTCGCTAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095117.10
CDS-3UTR CAA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACGGGCTTCTGCAGTGGTaGGGGAGCCAGGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDGLLQW*GSQVLP
Trigger: AGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCC...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGGCATCCCCGGCAGGCTaGCTCTTCTCCTGGGCTTCA +
Preference number: 5 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEASPAG*LFSWAS
Trigger: TGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGC...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp GCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGAGCAACAGGGCACCTaGGCCTCGAGCAGGTGGGTC +
Preference number: 5 (lower is better)
Translates to: AKVNMTQSLHPGPHVDSQEQQGT*ASSRWV
Trigger: GACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCTC...CTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATCAAAGGAACAGCTCTaGGGGGCCCAGCAGGGGCCA +
Preference number: 5 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRSKEQL*GAQQGP
Trigger: TGGCCCCTGCTGGGCCCCCAAGAGCTGTTCCTTTGA...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 90 bp GGACTCAAAGTCTGTGGTGCCACACTTGTGTTCATCCTCGCCCTCTaGACAGTGCTTCTGGAAATCACACAGCTGCTCAGGGGGCACACA +
Preference number: 5 (lower is better)
Translates to: GLKVCGATLVFILAL*TVLLEITQLLRGHT
Trigger: TGTGTGCCCCCTGAGCAGCTGTGTGATTTCCAGAAGCACTGTGCAGAGGGCGAGGATGAACACAAGTGTGGCACCACAGACTTTGAGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp AACATGATCCGCATTGAAGAGGATATTGGCAAAGCCAGAGGCTGCTaGATCTGTACTCCTCTGGCCGGGGCAGTGCTGCTTCTGCAGCCA +
Preference number: 5 (lower is better)
Translates to: NMIRIEEDIGKARGC*ICTPLAGAVLLLQP
Trigger: TGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCGGATCATGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 90 bp GGTAACATGATCCGCATTGAAGAGGATATTGGCAAAGCCAGAGGCTaGTGCATCTGTACTCCTCTGGCCGGGGCAGTGCTGCTTCTGCAG +
Preference number: 5 (lower is better)
Translates to: GNMIRIEEDIGKARG*CICTPLAGAVLLLQ
Trigger: CTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCGGATCATGTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp GCTTGCACTGTTGTCCAGCCAGGTACTGCACATCATCAATGGCAATaGGCCCCAGAGCTGGCTGGCCACCCAGAGTGGCTTCAAAAACAA +
Preference number: 5 (lower is better)
Translates to: ACTVVQPGTAHHQWQ*APELAGHPEWLQKQ
Trigger: TTGTTTTTGAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS-3UTR CAA 90 bp GAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGGGCTTCTGCAGTGGTaGGGGAGCCAGGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: EKELAKVNMTQSLHPGPHGLLQW*GSQVLP
Trigger: AGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCC...ATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGGCAGTGGTGCCAGGCTaGGCCACAGAGATGAGGAAG +
Preference number: 5 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEAVVPG*ATEMRK
Trigger: CTTCCTCATCTCTGTGGCCAAGCCTGGCACCACTGC...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGTCTGTGGTGCCACACTaGTGTTCATCCTCGCCCTCT +
Preference number: 5 (lower is better)
Translates to: WYKDPSTLLHHTRGQRHQSVVPH*CSSSPS
Trigger: AGAGGGCGAGGATGAACACAAGTGTGGCACCACAGA...CTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATATCTCTCAGAGTCACATaGTCCACCCCAGCCCCCTGC +
Preference number: 5 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQISLRVT*STPAPC
Trigger: GCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGA...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTTCAAAGGAACAGCTCTaGGGGGCCCAGCAGGGGCCA +
Preference number: 5 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGASKEQL*GAQQGP
Trigger: TGGCCCCTGCTGGGCCCCCAAGAGCTGTTCCTTTGA...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGGAGGGCTCTGTGGGTaGCTGGTGATTGATTCTGGG +
Preference number: 5 (lower is better)
Translates to: LVQGPLYPSPSHQRAKTPGGLCG*LVIDSG
Trigger: CCCAGAATCAATCACCAGCAACCCACAGAGCCCTCC...TGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 90 bp GGCTTGCCACAGCAGCTCCCGGAAGCCATTCTCCACCACAACCAGTaGCAAGAAGCCTTGGGGGTGACTTTGAAAATAGTAAGCCATGTG +
Preference number: 5 (lower is better)
Translates to: GLPQQLPEAILHHNQ*QEALGVTLKIVSHV
Trigger: CACATGGCTTACTATTTTCAAAGTCACCCCCAAGGCTTCTTGGCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 90 bp GAAAGTGATGACTGCAGGGTGGACATAGCTGGAACAAGCATGCAGTaGCTAGACATGATAAGGTCGTCTAGGCCCACGACGCCTCCTGGA +
Preference number: 5 (lower is better)
Translates to: ESDDCRVDIAGTSMQ*LDMIRSSRPTTPPG
Trigger: TCCAGGAGGCGTCGTGGGCCTAGACGACCTTATCATGTCTAGCCACTGCATGCTTGTTCCAGCTATGTCCACCCTGCAGTCATCACTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp GGCCCCAGAGCTGGCTGGCCACCCAGAGTGGCTTCAAAAACAATCTaGAACTCCTCAGAGTTGGACAGTTCAATCTGGACTTGTAGCCAC +
Preference number: 5 (lower is better)
Translates to: GPRAGWPPRVASKTI*NSSELDSSIWTCSH
Trigger: GTGGCTACAAGTCCAGATTGAACTGTCCAACTCTGAGGAGTTCCAGATTGTTTTTGAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS-3UTR CAA 90 bp AGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGAGCAGTGGTGCCAGGCTaGGCCACAGAGATGAGGAAG +
Preference number: 5 (lower is better)
Translates to: RAGEGKYDSVPTSRPTCRAVVPG*ATEMRK
Trigger: CTTCCTCATCTCTGTGGCCAAGCCTGGCACCACTGC...TCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACTGGGCTTCAACCCATaGCCACTGCAGCTTCCCTAC +
Preference number: 5 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTLGFNP*PLQLPY
Trigger: GTAGGGAAGCTGCAGTGGCAATGGGTTGAAGCCCAG...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TTCTTGGTACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACAAACAGCAACTGGTACTaGGTGCTGGCCTCTGGCTGG +
Preference number: 5 (lower is better)
Translates to: FLVQGPLYPSPSHQRAKTNSNWY*VLASGW
Trigger: CCAGCCAGAGGCCAGCACCAAGTACCAGTTGCTGTT...TGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTACCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAAACAGCAACTGGTACTaGGTGCTGGCCTCTGGCTGG +
Preference number: 5 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQINSNWY*VLASGW
Trigger: CCAGCCAGAGGCCAGCACCAAGTACCAGTTGCTGTT...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGACACCACCTTCCAGGCTaGCTCAGCCTGCACATTGAC +
Preference number: 5 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRHHLPG*LSLHID
Trigger: GTCAATGTGCAGGCTGAGCAAGCCTGGAAGGTGGTG...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CCAGGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGACTAGGTGAAGGCTGCTaGCACTGTTGTCCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: PGPHVDSQVLVRFRCCKRLGEGC*HCCPAR
Trigger: CCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAG...TCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp TACAAGGACCCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGGAGGGCTCTGTGGGTaGCTGGTGATTGATTCTGGG +
Preference number: 5 (lower is better)
Translates to: YKDPSTLLHHTRGQRHQIGGLCG*LVIDSG
Trigger: CCCAGAATCAATCACCAGCAACCCACAGAGCCCTCC...TATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGGGTCCTTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS TCA 90 bp GGAGGGCTCTGTGGGTTGCTGGTGATTGATTCTGGGAGGGTAACATaGTCCGCATTGAAGAGGATATTGGCAAAGCCAGAGGCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: GGLCGLLVIDSGRVT*SALKRILAKPEAAA
Trigger: TGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCGGATCATGTTACCCTCCCAGAATCAATCACCAGCAACCCACAGAGCCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 90 bp GTATGCCAGCTGCAGGAGTCCCGTTCAAAGTTACAGGAGAGCTCTTaGTCACTTTCAGTGGTCACCATGGGGTTGCAGTCTCTCAGAGTC +
Preference number: 5 (lower is better)
Translates to: VCQLQESRSKLQESS*SLSVVTMGLQSLRV
Trigger: GACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 90 bp CAGTCACACACAAAGTTGCATACAGCTTTGATGGGGCTTCTGCAGTaGTTGGGGAGCCAGGTCTTGCCTAGCGACTGTGCAGCCATAAAC +
Preference number: 5 (lower is better)
Translates to: QSHTKLHTALMGLLQ*LGSQVLPSDCAAIN
Trigger: GTTTATGGCTGCACAGTCGCTAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACAGAGCAACAGGGCACCTaGGCCTCGAGCAGGTGGGTC +
Preference number: 5 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTEQQGT*ASSRWV
Trigger: GACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCTC...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp GAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTGGAGGCATGAGACTGTaGTTGCTGGCAGTGGCTCAC +
Preference number: 5 (lower is better)
Translates to: ERAGEGKYDSVPTSRPTCGGMRL*LLAVAH
Trigger: GTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCC...ACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTGGAGGCATGAGACTGTaGTTGCTGGCAGTGGCTCAC +
Preference number: 5 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSGGMRL*LLAVAH
Trigger: GTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCC...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 90 bp AGGAGTCCCGTTCAAAGTTACAGGAGAGCTCTTGGTCACTTTCAGTaGTCACCATGGGGTTGCAGTCTCTCAGAGTCACATTGTCCACCC +
Preference number: 5 (lower is better)
Translates to: RSPVQSYRRALGHFQ*SPWGCSLSESHCPP
Trigger: GGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCATCTCTCAGAGTCACATaGTCCACCCCAGCCCCCTGC +
Preference number: 5 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPSLRVT*STPAPC
Trigger: GCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGA...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp GAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACGCAGAAAATGTCACTTaGAAGTCACCCTGGATGCGG +
Preference number: 5 (lower is better)
Translates to: ELAKVNMTQSLHPGPHVDAENVT*KSPWMR
Trigger: CCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGC...GTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACAAAAAGCCTTGGCCAGTaGTGTGGTCAAGCTGAGAGC +
Preference number: 5 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTKSLGQ*CGQAES
Trigger: GCTCTCAGCTTGACCACACAACTGGCCAAGGCTTTT...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CCCTCTACCCTTCTCCATCACACCAGAGGGCAAAGACACCAGATAGAGAAAGAGCAGTCACACACAAAGTaGCATACAGCTTTGATGGGG +
Preference number: 5 (lower is better)
Translates to: PSTLLHHTRGQRHQIEKEQSHTK*HTALMG
Trigger: CCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTG...CTCTTTCTCTATCTGGTGTCTTTGCCCTCTGGTGTGATGGAGAAGGGTAGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGGAGTCCTGCTCAAAGTaGCAGGTGAAGGAGGTGCTT +
Preference number: 5 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVESCSK*QVKEVL
Trigger: AAGCACCTCCTTCACCTGCAACTTTGAGCAGGACTC...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCTGTGGTGCCACACTaGTGTTCATCCTCGCCCTCT +
Preference number: 5 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQSVVPH*CSSSPS
Trigger: AGAGGGCGAGGATGAACACAAGTGTGGCACCACAGA...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACACTGGGCTTCAACCCATaGCCACTGCAGCTTCCCTAC +
Preference number: 5 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTLGFNP*PLQLPY
Trigger: GTAGGGAAGCTGCAGTGGCAATGGGTTGAAGCCCAG...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACACCACCTTCCAGGCTaGCTCAGCCTGCACATTGAC +
Preference number: 5 (lower is better)
Translates to: QRHQIEKELAKVNMTQSLHHLPG*LSLHID
Trigger: GTCAATGTGCAGGCTGAGCAAGCCTGGAAGGTGGTG...TAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp GGCCCACATGTAGACAGTCAGGTGCTTGTGAGGTTTAGATGCTGCAAGAGATGCTGGAACTCCTCAGAGTaGGACAGTTCAATCTGGACT +
Preference number: 5 (lower is better)
Translates to: GPHVDSQVLVRFRCCKRCWNSSE*DSSIWT
Trigger: AGTCCAGATTGAACTGTCCAACTCTGAGGAGTTCCA...GCATCTCTTGCAGCATCTAAACCTCACAAGCACCTGACTGTCTACATGTGGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACACTAGGTGAAGGCTGCTaGCACTGTTGTCCAGCCAGG +
Preference number: 5 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTLGEGC*HCCPAR
Trigger: CCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAG...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp GGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGCTGCATTGAAGAGGATATaGGCAAAGCCAGAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: GKYDSVPTSRPTCRQSGAALKRI*AKPEAA
Trigger: AGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGC...AGCACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGTCACACACAAAGTaGCATACAGCTTTGATGGGG +
Preference number: 5 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSQSHTK*HTALMG
Trigger: CCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTG...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTCAGGTGGATCTGTCTCCACAGTaGTCTTCACCATCACAGAGC +
Preference number: 5 (lower is better)
Translates to: KVNMTQSLHPGPHVDSQVDLSPQ*SSPSQS
Trigger: GCTCTGTGATGGTGAAGACAACTGTGGAGACAGATC...CACCTGACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACAAAATGGATGGGCACTTaGAATGTCAACCCGGTCTCT +
Preference number: 5 (lower is better)
Translates to: RERAGEGKYDSVPTSRPTKWMGT*NVNPVS
Trigger: AGAGACCGGGTTGACATTCAAAGTGCCCATCCATTT...TGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAGGCCCACATGTAGACAGTAAATGGATGGGCACTTaGAATGTCAACCCGGTCTCT +
Preference number: 5 (lower is better)
Translates to: LAKVNMTQSLHPGPHVDSKWMGT*NVNPVS
Trigger: AGAGACCGGGTTGACATTCAAAGTGCCCATCCATTT...ACTGTCTACATGTGGGCCTGGATGTAGGGACTGAGTCATATTTACCTTCGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp CACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCAAAAAGCCTTGGCCAGTaGTGTGGTCAAGCTGAGAGC +
Preference number: 5 (lower is better)
Translates to: HQIEKELAKVNMTQSLHPKSLGQ*CGQAES
Trigger: GCTCTCAGCTTGACCACACAACTGGCCAAGGCTTTT...TGGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGGCAGAAAATGTCACTTaGAAGTCACCCTGGATGCGG +
Preference number: 5 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQAENVT*KSPWMR
Trigger: CCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGC...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp ACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATCCGCATTGAAGAGGATATaGGCAAAGCCAGAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: TPDRERAGEGKYDSVPTSALKRI*AKPEAA
Trigger: AGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGC...GGATGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACAGATCTGTCTCCACAGTaGTCTTCACCATCACAGAGC +
Preference number: 5 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTDLSPQ*SSPSQS
Trigger: GCTCTGTGATGGTGAAGACAACTGTGGAGACAGATC...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AGAGGGCAAAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGGCCTTGGGGGTGACTTaGAAAATAGTAAGCCATGTG +
Preference number: 5 (lower is better)
Translates to: RGQRHQIEKELAKVNMTQALGVT*KIVSHV
Trigger: CACATGGCTTACTATTTTCAAAGTCACCCCCAAGGC...CTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTTTGCCCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACAGCCTTGGGGGTGACTTaGAAAATAGTAAGCCATGTG +
Preference number: 5 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTALGVT*KIVSHV
Trigger: CACATGGCTTACTATTTTCAAAGTCACCCCCAAGGC...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS-3UTR CAA 90 bp AAGACACCAGATAGAGAAAGAGCTGGCGAAGGTAAATATGACTCAGTCCCTACATGGAACTCCTCAGAGTaGGACAGTTCAATCTGGACT +
Preference number: 5 (lower is better)
Translates to: KTPDRERAGEGKYDSVPTWNSSE*DSSIWT
Trigger: AGTCCAGATTGAACTGTCCAACTCTGAGGAGTTCCA...TGTAGGGACTGAGTCATATTTACCTTCGCCAGCTCTTTCTCTATCTGGTGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CAA 72 bp CTCCTCTGTCCAGCTCCCGCTGCCGCCGCCTGGGGCTaGCCACAGCAGCTCCCGGAAGCCATTCTCCACCAC +
Preference number: 6 (lower is better)
Translates to: LLCPAPAAAAWG*PQQLPEAILHH
Trigger: GTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 72 bp GCATCTGTACTCCTCTGGCCGGGGCAGTGCTGCTTCTaGAGCCAATGCCAGCCCCCAAGGCCCATGAGCACC +
Preference number: 6 (lower is better)
Translates to: ASVLLWPGQCCF*SQCQPPRPMST
Trigger: GGTGCTCATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp GCTGCTGCATCTGTACTCCTCTGGCCGGGGCAGTGCTaGTTCTGCAGCCAATGCCAGCCCCCAAGGCCCATG +
Preference number: 6 (lower is better)
Translates to: AAASVLLWPGQC*FCSQCQPPRPM
Trigger: CATGGGCCTTGGGGGCTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp AATCTTCTCCTCTGTCCAGCTCCCGCTGCCGCCGCCTaGGGCTTGCCACAGCAGCTCCCGGAAGCCATTCTC +
Preference number: 6 (lower is better)
Translates to: NLLLCPAPAAAA*GLPQQLPEAIL
Trigger: GAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS GCA 72 bp CTTAGCTGCCCCCAGGCCTTCTGCAGAGATAGGAAGTaGCCAGGAGCATCCCGATTGGCATCCCCGGCAGGC +
Preference number: 6 (lower is better)
Translates to: LSCPQAFCRDRK*PGASRLASPAG
Trigger: GCCTGCCGGGGATGCCAATCGGGATGCTCCTGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp AGTGGTGATGCCCCAGGGGGCACCTGGCCTGAGGGATaGGTAGCCCACAGTCCCGGAACTCCACATCATCCA +
Preference number: 6 (lower is better)
Translates to: SGDAPGGTWPEG*VAHSPGTPHHP
Trigger: TGGATGATGTGGAGTTCCGGGACTGTGGGCTACCCATCCCTCAGGCCAGGTGCCCCCTGGGGCATCACCACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 90 bp AATAATCTTCTCCTCTGTCCAGCTCCCGCTGCCGCCGCCTGGGGCTaGCCACAGCAGCTCCCGGAAGCCATTCTCCACCACAACCAGTGC +
Preference number: 6 (lower is better)
Translates to: NNLLLCPAPAAAAWG*PQQLPEAILHHNQC
Trigger: GCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CAA 90 bp GGGCCCAGCAGGGGCCAGGCCGCACAGCTATGTCATCCAGGGCCATaGTGCCATGGTACCCATTCCGGAGGCCTTCAAACAGCAACTGGT +
Preference number: 6 (lower is better)
Translates to: GPSRGQAAQLCHPGP*CHGTHSGGLQTATG
Trigger: ACCAGTTGCTGTTTGAAGGCCTCCGGAATGGGTACCATGGCACAATGGCCCTGGATGACATAGCTGTGCGGCCTGGCCCCTGCTGGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 90 bp GCCCAGGCGCCAGGCAGATCTACCATGGGCACTGATGCTGAGCTCTaGACGCCTTGTGCTCTCTTCCACGTGGACCCTCAAGGTGCCTGG +
Preference number: 6 (lower is better)
Translates to: AQAPGRSTMGTDAEL*TPCALFHVDPQGAW
Trigger: CCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTCAAGAGCTCAGCATCAGTGCCCATGGTAGATCTGCCTGGCGCCTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 90 bp CAGGAAAGCCCATGTAGTACCAGAAGCGGAGGCATGAGACTGTTGTaGCTGGCAGTGGCTCACTGCGCAGCCAGGCTGCCTGGCCCCCAG +
Preference number: 6 (lower is better)
Translates to: QESPCSTRSGGMRLL*LAVAHCAARLPGPQ
Trigger: CTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 90 bp GCTCAGGAAAGCCCATGTAGTACCAGAAGCGGAGGCATGAGACTGTaGTTGCTGGCAGTGGCTCACTGCGCAGCCAGGCTGCCTGGCCCC +
Preference number: 6 (lower is better)
Translates to: AQESPCSTRSGGMRL*LLAVAHCAARLPGP
Trigger: GGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp GCCCAGGAGCATCCCGATTGGCATCCCCGGCAGGCTTaGTCTTCTCCTGGGCTTCAACCCATTGCCACTGCA +
Preference number: 6 (lower is better)
Translates to: AQEHPDWHPRQA*SSPGLQPIATA
Trigger: TGCAGTGGCAATGGGTTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGCCAATCGGGATGCTCCTGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp CCTCCCAGCCCCCAGCAGAGGCGGACTCAAAGTCTGTaGTGCCACACTTGTGTTCATCCTCGCCCTCTGCAC +
Preference number: 6 (lower is better)
Translates to: PPSPQQRRTQSL*CHTCVHPRPLH
Trigger: GTGCAGAGGGCGAGGATGAACACAAGTGTGGCACCACAGACTTTGAGTCCGCCTCTGCTGGGGGCTGGGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GTTGCTGGCAGTGGCTCACTGCGCAGCCAGGCTGCCTaGCCCCCAGGACCTAGCACGCTGGTTTCAAAGAAA +
Preference number: 6 (lower is better)
Translates to: VAGSGSLRSQAA*PPGPSTLVSKK
Trigger: TTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TCCCGCAAGTGCCCACCCTGGTACCACACAGCTAGCTaGCCTCGGGCACTGCTCAGGAGCACTCTCAACTCA +
Preference number: 6 (lower is better)
Translates to: SRKCPPWYHTAS*PRALLRSTLNS
Trigger: TGAGTTGAGAGTGCTCCTGAGCAGTGCCCGAGGCCAGCTAGCTGTGTGGTACCAGGGTGGGCACTTGCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp TGCCCAGGAGCATCCCGATTGGCATCCCCGGCAGGCTaGCTCTTCTCCTGGGCTTCAACCCATTGCCACTGC +
Preference number: 6 (lower is better)
Translates to: CPGASRLASPAG*LFSWASTHCHC
Trigger: GCAGTGGCAATGGGTTGAAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGCCAATCGGGATGCTCCTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp CCCAGCCCCCAGCAGAGGCGGACTCAAAGTCTGTGGTaGCACACTTGTGTTCATCCTCGCCCTCTGCACAGT +
Preference number: 6 (lower is better)
Translates to: PSPQQRRTQSLW*HTCVHPRPLHS
Trigger: ACTGTGCAGAGGGCGAGGATGAACACAAGTGTGGCACCACAGACTTTGAGTCCGCCTCTGCTGGGGGCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp AGAGCAGGTGTGAGAGCCCGGGCCTCAGATCTTAGCTaGCCCCAGGCCTTCTGCAGAGATAGGAAGTGCCCA +
Preference number: 6 (lower is better)
Translates to: RAGVRARASDLS*PQAFCRDRKCP
Trigger: TGGGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGCCCGGGCTCTCACACCTGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp CAGACTGACAAACTCCAGCTGGAACGGCCGGCGCCGTaGCCCGAGAATAATCTTCTCCTCTGTCCAGCTCCC +
Preference number: 6 (lower is better)
Translates to: QTDKLQLERPAP*PENNLLLCPAP
Trigger: GGGAGCTGGACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAGCTGGAGTTTGTCAGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 72 bp GGGCCATCCAAGTCCACCAGACTGACAAACTCCAGCTaGAACGGCCGGCGCCGTGCCCCGAGAATAATCTTC +
Preference number: 6 (lower is better)
Translates to: GPSKSTRLTNSS*NGRRRAPRIIF
Trigger: GAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAGCTGGAGTTTGTCAGTCTGGTGGACTTGGATGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 72 bp CGCTCCCTCCTCATGGCCAGGCACAGTGTCCCAATCTaGGGCCCATACAGGCGGTACCAGAAGCTGAGACAT +
Preference number: 6 (lower is better)
Translates to: RSLLMARHSVPI*GPYRRYQKLRH
Trigger: ATGTCTCAGCTTCTGGTACCGCCTGTATGGGCCCCAGATTGGGACACTGTGCCTGGCCATGAGGAGGGAGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GAGCGGCCACATGACCCTTGGGCAGTACATTTGGGCTaGTGTCCACCACCATGTAGTGCCCTTGGGCTGTCC +
Preference number: 6 (lower is better)
Translates to: ERPHDPWAVHLG*CPPPCSALGLS
Trigger: GGACAGCCCAAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAGGGTCATGTGGCCGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TTGGCAAAGCCAGAGGCTGCTGCATCTGTACTCCTCTaGCCGGGGCAGTGCTGCTTCTGCAGCCAATGCCAG +
Preference number: 6 (lower is better)
Translates to: LAKPEAAASVLL*PGQCCFCSQCQ
Trigger: CTGGCATTGGCTGCAGAAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp GAGAAGCCACAGTCAGAGTCTTCAAAGGAACAGCTCTaGGGGGCCCAGCAGGGGCCAGGCCGCACAGCTATG +
Preference number: 6 (lower is better)
Translates to: EKPQSESSKEQL*GAQQGPGRTAM
Trigger: CATAGCTGTGCGGCCTGGCCCCTGCTGGGCCCCCAAGAGCTGTTCCTTTGAAGACTCTGACTGTGGCTTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 72 bp CACAGACACGGGTGCTGCCACTTCACCCTGGCTAGGTaGAGGCTGCTTGCACTGTTGTCCAGCCAGGTACTG +
Preference number: 6 (lower is better)
Translates to: HRHGCCHFTLAR*RLLALLSSQVL
Trigger: CAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAGCCAGGGTGAAGTGGCAGCACCCGTGTCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp ACAGCCTCAAACACCACCTTCCAGGCTTGCTCAGCCTaGACATTGACGCTGCCCAGGCGCCAGGCAGATCTA +
Preference number: 6 (lower is better)
Translates to: TASNTTFQACSA*TLTLPRRQADL
Trigger: TAGATCTGCCTGGCGCCTGGGCAGCGTCAATGTGCAGGCTGAGCAAGCCTGGAAGGTGGTGTTTGAGGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TCCAGCCGCAGCTCAGCGACATCTCTAGAGGCAATGTaGTACCAGAGCCTCAGTTCACAGGTAGGGGCTGCC +
Preference number: 6 (lower is better)
Translates to: SSRSSATSLEAM*YQSLSSQVGAA
Trigger: GGCAGCCCCTACCTGTGAACTGAGGCTCTGGTACCACATTGCCTCTAGAGATGTCGCTGAGCTGCGGCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TCTGCAGAGATAGGAAGTGCCCAGGAGCATCCCGATTaGCATCCCCGGCAGGCTTGCTCTTCTCCTGGGCTT +
Preference number: 6 (lower is better)
Translates to: SAEIGSAQEHPD*HPRQACSSPGL
Trigger: AAGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGCCAATCGGGATGCTCCTGGGCACTTCCTATCTCTGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp AGTCAGAGCGGCCACATGACCCTTGGGCAGTACATTTaGGCTGGTGTCCACCACCATGTAGTGCCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: SQSGHMTLGQYI*AGVHHHVVPLG
Trigger: GCCCAAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAGGGTCATGTGGCCGCTCTGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp TTCTGCAGAGATAGGAAGTGCCCAGGAGCATCCCGATaGGCATCCCCGGCAGGCTTGCTCTTCTCCTGGGCT +
Preference number: 6 (lower is better)
Translates to: FCRDRKCPGASR*ASPAGLLFSWA
Trigger: AGCCCAGGAGAAGAGCAAGCCTGCCGGGGATGCCAATCGGGATGCTCCTGGGCACTTCCTATCTCTGCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp AACTGGCACCTGAGGTCTTGTGAGCAACAGGGCACCTaGGCCTCGAGCAGGTGGGTCCGTGGGATCCAAGAA +
Preference number: 6 (lower is better)
Translates to: NWHLRSCEQQGT*ASSRWVRGIQE
Trigger: TTCTTGGATCCCACGGACCCACCTGCTCGAGGCCAAGGTGCCCTGTTGCTCACAAGACCTCAGGTGCCAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp CCATGTAGTACCAGAAGCGGAGGCATGAGACTGTTGTaGCTGGCAGTGGCTCACTGCGCAGCCAGGCTGCCT +
Preference number: 6 (lower is better)
Translates to: PCSTRSGGMRLL*LAVAHCAARLP
Trigger: AGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp AGCCCATGTAGTACCAGAAGCGGAGGCATGAGACTGTaGTTGCTGGCAGTGGCTCACTGCGCAGCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: SPCSTRSGGMRL*LLAVAHCAARL
Trigger: CAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 90 bp ACAGCGCCCCTGTGTGTGGCATTTCGGGTGGCAGAAAATGTCACTTaGAAGTCACCCTGGATGCGGCCAGTGTTCACTGCCAGCTCCTGC +
Preference number: 6 (lower is better)
Translates to: TAPLCVAFRVAENVT*KSPWMRPVFTASSC
Trigger: GCAGGAGCTGGCAGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGCCACCCGAAATGCCACACACAGGGGCGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 72 bp TCCCAATCTGGGGCCCATACAGGCGGTACCAGAAGCTaGGACATTCCTTGGGGACAACTGGCACCTGAGGTC +
Preference number: 6 (lower is better)
Translates to: SQSGAHTGGTRS*DIPWGQLAPEV
Trigger: GACCTCAGGTGCCAGTTGTCCCCAAGGAATGTCTCAGCTTCTGGTACCGCCTGTATGGGCCCCAGATTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp GGTGAAGGCTGCTTGCACTGTTGTCCAGCCAGGTACTaGACATCATCAATGGCAATGGGCCCCAGAGCTGGC +
Preference number: 6 (lower is better)
Translates to: GEGCLHCCPARY*TSSMAMGPRAG
Trigger: GCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GGCATTACTCTGGTGCGTCCACAGACCCCAGCCCCCTaGGGAGAAGCCACAGTCAGAGTCTTCAAAGGAACA +
Preference number: 6 (lower is better)
Translates to: GITLVRPQTPAP*GEATVRVFKGT
Trigger: TGTTCCTTTGAAGACTCTGACTGTGGCTTCTCCCCAGGGGGCTGGGGTCTGTGGACGCACCAGAGTAATGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TGCTCTCTTCCACGTGGACCCTCAAGGTGCCTGGATTaGGGACGCTCATGTGGTACCAGAAGGTCAGACAGG +
Preference number: 6 (lower is better)
Translates to: CSLPRGPSRCLD*GRSCGTRRSDR
Trigger: CCTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAATCCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp CCTTGTGCTCTCTTCCACGTGGACCCTCAAGGTGCCTaGATTGGGGACGCTCATGTGGTACCAGAAGGTCAG +
Preference number: 6 (lower is better)
Translates to: PCALFHVDPQGA*IGDAHVVPEGQ
Trigger: CTGACCTTCTGGTACCACATGAGCGTCCCCAATCCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCACAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp GTGCTCTCTTCCACGTGGACCCTCAAGGTGCCTGGATaGGGGACGCTCATGTGGTACCAGAAGGTCAGACAG +
Preference number: 6 (lower is better)
Translates to: VLSSTWTLKVPG*GTLMWYQKVRQ
Trigger: CTGTCTGACCTTCTGGTACCACATGAGCGTCCCCAATCCAGGCACCTTGAGGGTCCACGTGGAAGAGAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 90 bp CTTGGGCAGTACATTTGGGCTGGTGTCCACCACCATGTAGTGCCCTaGGGCTGTCCCTGTGGTATGGTCTATCCAAGGACCCCAAGAAGC +
Preference number: 6 (lower is better)
Translates to: LGQYIWAGVHHHVVP*GCPCGMVYPRTPRS
Trigger: GCTTCTTGGGGTCCTTGGATAGACCATACCACAGGGACAGCCCAAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 72 bp GAAATGGATGGGCACTTTGAATGTCAACCCGGTCTCTaGCCCAGGCTGTCCCCAGTTCTCCATGGCGGCTTC +
Preference number: 6 (lower is better)
Translates to: EMDGHFECQPGL*PRLSPVLHGGF
Trigger: GAAGCCGCCATGGAGAACTGGGGACAGCCTGGGTCAGAGACCGGGTTGACATTCAAAGTGCCCATCCATTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 72 bp TCCCCAGCTAGAAGGATCCGAAATGGATGGGCACTTTaGATGTCAACCCGGTCTCTGACCCAGGCTGTCCCC +
Preference number: 6 (lower is better)
Translates to: SPARRIRNGWAL*MSTRSLTQAVP
Trigger: GGGGACAGCCTGGGTCAGAGACCGGGTTGACATTCAAAGTGCCCATCCATTTCGGATCCTTCTAGCTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 72 bp CTCAGGAAAGCCCATGTAGTACCAGAAGCGGAGGCATaGGACTGTTGTTGCTGGCAGTGGCTCACTGCGCAG +
Preference number: 6 (lower is better)
Translates to: LRKAHVVPEAEA*DCCCWQWLTAQ
Trigger: CTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp CGCATTGAAGAGGATATTGGCAAAGCCAGAGGCTGCTaGATCTGTACTCCTCTGGCCGGGGCAGTGCTGCTT +
Preference number: 6 (lower is better)
Translates to: RIEEDIGKARGC*ICTPLAGAVLL
Trigger: AAGCAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS GCA 72 bp ATCCGCATTGAAGAGGATATTGGCAAAGCCAGAGGCTaGTGCATCTGTACTCCTCTGGCCGGGGCAGTGCTG +
Preference number: 6 (lower is better)
Translates to: IRIEEDIGKARG*CICTPLAGAVL
Trigger: CAGCACTGCCCCGGCCAGAGGAGTACAGATGCAGCAGCCTCTGGCTTTGCCAATATCCTCTTCAATGCGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp CACGGTCCCAGGCCTGTCTCAAAGTCAGTGGCCATGTaGTGGCTGCAGATGAGTGGGTCTTCATCAGATCTG +
Preference number: 6 (lower is better)
Translates to: HGPRPVSKSVAM*WLQMSGSSSDL
Trigger: CAGATCTGATGAAGACCCACTCATCTGCAGCCACCACATGGCCACTGACTTTGAGACAGGCCTGGGACCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GCCTTCAAACAGCAACTGGTACTTGGTGCTGGCCTCTaGCTGGTGATGAAGAGTGACCCAAGCCTGGTGCCA +
Preference number: 6 (lower is better)
Translates to: AFKQQLVLGAGL*LVMKSDPSLVP
Trigger: TGGCACCAGGCTTGGGTCACTCTTCATCACCAGCCAGAGGCCAGCACCAAGTACCAGTTGCTGTTTGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TGTCCACCACCATGTAGTGCCCTTGGGCTGTCCCTGTaGTATGGTCTATCCAAGGACCCCAAGAAGCAAGGC +
Preference number: 6 (lower is better)
Translates to: CPPPCSALGLSL*YGLSKDPKKQG
Trigger: GCCTTGCTTCTTGGGGTCCTTGGATAGACCATACCACAGGGACAGCCCAAGGGCACTACATGGTGGTGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GGTGTTCCTCTGAAGTCAGAGCGGCCACATGACCCTTaGGCAGTACATTTGGGCTGGTGTCCACCACCATGT +
Preference number: 6 (lower is better)
Translates to: GVPLKSERPHDP*AVHLGWCPPPC
Trigger: ACATGGTGGTGGACACCAGCCCAAATGTACTGCCCAAGGGTCATGTGGCCGCTCTGACTTCAGAGGAACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp CCAGGCAGATCTACCATGGGCACTGATGCTGAGCTCTaGACGCCTTGTGCTCTCTTCCACGTGGACCCTCAA +
Preference number: 6 (lower is better)
Translates to: PGRSTMGTDAEL*TPCALFHVDPQ
Trigger: TTGAGGGTCCACGTGGAAGAGAGCACAAGGCGTCAAGAGCTCAGCATCAGTGCCCATGGTAGATCTGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp GGTGCTGCCACTTCACCCTGGCTAGGTGAAGGCTGCTaGCACTGTTGTCCAGCCAGGTACTGCACATCATCA +
Preference number: 6 (lower is better)
Translates to: GAATSPWLGEGC*HCCPARYCTSS
Trigger: TGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAGCCAGGGTGAAGTGGCAGCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp AAGTTGCATACAGCTTTGATGGGGCTTCTGCAGTGGTaGGGGAGCCAGGTCTTGCCTAGCGACTGTGCAGCC +
Preference number: 6 (lower is better)
Translates to: KLHTALMGLLQW*GSQVLPSDCAA
Trigger: GGCTGCACAGTCGCTAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114223.8
CDS CAA 90 bp ACAGACACGGGTGCTGCCACTTCACCCTGGCTAGGTGAAGGCTGCTaGCACTGTTGTCCAGCCAGGTACTGCACATCATCAATGGCAATG +
Preference number: 6 (lower is better)
Translates to: TDTGAATSPWLGEGC*HCCPARYCTSSMAM
Trigger: CATTGCCATTGATGATGTGCAGTACCTGGCTGGACAACAGTGCAAGCAGCCTTCACCTAGCCAGGGTGAAGTGGCAGCACCCGTGTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp CTCACGCATGACAGGAGAACGCAGAGTCGCAGTAGATaGCTCCTTCCCACTGTGGGTTCCCACAGCCATATA +
Preference number: 6 (lower is better)
Translates to: LTHDRRTQSRSR*LLPTVGSHSHI
Trigger: TATATGGCTGTGGGAACCCACAGTGGGAAGGAGCCATCTACTGCGACTCTGCGTTCTCCTGTCATGCGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TTTCGGGTGGCAGAAAATGTCACTTTGAAGTCACCCTaGATGCGGCCAGTGTTCACTGCCAGCTCCTGCCAG +
Preference number: 6 (lower is better)
Translates to: FRVAENVTLKSP*MRPVFTASSCQ
Trigger: CTGGCAGGAGCTGGCAGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGCCACCCGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GACTGCAGGGTGGACATAGCTGGAACAAGCATGCAGTaGCTAGACATGATAAGGTCGTCTAGGCCCACGACG +
Preference number: 6 (lower is better)
Translates to: DCRVDIAGTSMQ*LDMIRSSRPTT
Trigger: CGTCGTGGGCCTAGACGACCTTATCATGTCTAGCCACTGCATGCTTGTTCCAGCTATGTCCACCCTGCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp AAGTTGCATACAGCTTTGATGGGGCTTCTGCAGTGGTaGGGGAGCCAGGTCTTGCCTAGCGACTGTGCAGCT +
Preference number: 6 (lower is better)
Translates to: KLHTALMGLLQW*GSQVLPSDCAA
Trigger: AGCTGCACAGTCGCTAGGCAAGACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000095117.10
CDS CAA 72 bp CTGATGTCCTGCCAGCCACAGGAGTCCTGCTCAAAGTaGCAGGTGAAGGAGGTGCTTGGGATAGTTGAGGCT +
Preference number: 6 (lower is better)
Translates to: LMSCQPQESCSK*QVKEVLGIVEA
Trigger: AGCCTCAACTATCCCAAGCACCTCCTTCACCTGCAACTTTGAGCAGGACTCCTGTGGCTGGCAGGACATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp GAGAGCTCTTGGTCACTTTCAGTGGTCACCATGGGGTaGCAGTCTCTCAGAGTCACATTGTCCACCCCAGCC +
Preference number: 6 (lower is better)
Translates to: ESSWSLSVVTMG*QSLRVTLSTPA
Trigger: GGCTGGGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CAA 72 bp TACATTTGGGCTGGTGTCCACCACCATGTAGTGCCCTaGGGCTGTCCCTGTGGTATGGTCTATCCAAGGACC +
Preference number: 6 (lower is better)
Translates to: YIWAGVHHHVVP*GCPCGMVYPRT
Trigger: GGTCCTTGGATAGACCATACCACAGGGACAGCCCAAGGGCACTACATGGTGGTGGACACCAGCCCAAATGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TGCACATCATCAATGGCAATGGGCCCCAGAGCTGGCTaGCCACCCAGAGTGGCTTCAAAAACAATCTGGAAC +
Preference number: 6 (lower is better)
Translates to: CTSSMAMGPRAG*PPRVASKTIWN
Trigger: GTTCCAGATTGTTTTTGAAGCCACTCTGGGTGGCCAGCCAGCTCTGGGGCCCATTGCCATTGATGATGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp CAGTCTCCACAGTCACACACAAAGTTGCATACAGCTTaGATGGGGCTTCTGCAGTGGTTGGGGAGCCAGGTC +
Preference number: 6 (lower is better)
Translates to: QSPQSHTKLHTA*MGLLQWLGSQV
Trigger: GACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTGTGGAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp CTGTGTGTGGCATTTCGGGTGGCAGAAAATGTCACTTaGAAGTCACCCTGGATGCGGCCAGTGTTCACTGCC +
Preference number: 6 (lower is better)
Translates to: LCVAFRVAENVT*KSPWMRPVFTA
Trigger: GGCAGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGCCACCCGAAATGCCACACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp GCTGCAGGAGTCCCGTTCAAAGTTACAGGAGAGCTCTaGGTCACTTTCAGTGGTCACCATGGGGTTGCAGTC +
Preference number: 6 (lower is better)
Translates to: AAGVPFKVTGEL*VTFSGHHGVAV
Trigger: GACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS TCA 72 bp AGTCTCCACAGTCACACACAAAGTTGCATACAGCTTTaGTGGGGCTTCTGCAGTGGTTGGGGAGCCAGGTCT +
Preference number: 6 (lower is better)
Translates to: SLHSHTQSCIQL*WGFCSGWGARS
Trigger: AGACCTGGCTCCCCAACCACTGCAGAAGCCCCATCAAAGCTGTATGCAACTTTGTGTGTGACTGTGGAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS TCA 72 bp TGTGTGTGGCATTTCGGGTGGCAGAAAATGTCACTTTaGAGTCACCCTGGATGCGGCCAGTGTTCACTGCCA +
Preference number: 6 (lower is better)
Translates to: CVWHFGWQKMSL*SHPGCGQCSLP
Trigger: TGGCAGTGAACACTGGCCGCATCCAGGGTGACTTCAAAGTGACATTTTCTGCCACCCGAAATGCCACACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp TACAGGAGAGCTCTTGGTCACTTTCAGTGGTCACCATaGGGTTGCAGTCTCTCAGAGTCACATTGTCCACCC +
Preference number: 6 (lower is better)
Translates to: YRRALGHFQWSP*GCSLSESHCPP
Trigger: GGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CCA 72 bp CTGCAGGAGTCCCGTTCAAAGTTACAGGAGAGCTCTTaGTCACTTTCAGTGGTCACCATGGGGTTGCAGTCT +
Preference number: 6 (lower is better)
Translates to: LQESRSKLQESS*SLSVVTMGLQS
Trigger: AGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CAA 90 bp TGTATGCCAGCTGCAGGAGTCCCGTTCAAAGTTACAGGAGAGCTCTaGGTCACTTTCAGTGGTCACCATGGGGTTGCAGTCTCTCAGAGT +
Preference number: 6 (lower is better)
Translates to: CMPAAGVPFKVTGEL*VTFSGHHGVAVSQS
Trigger: ACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS TCA 72 bp GTAGTAATAGAAGGTGAACGAGCAGTTGTTGGAGACTaGGCCTTGGAACTCAGGGCTGTAGAGGACAGCAGT +
Preference number: 6 (lower is better)
Translates to: VVIEGERAVVGD*ALELRAVEDSS
Trigger: ACTGCTGTCCTCTACAGCCCTGAGTTCCAAGGCTCAGTCTCCAACAACTGCTCGTTCACCTTCTATTACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CAA 72 bp CACCACAACCAGTGCCAAGAAGCCTTGGGGGTGACTTaGAAAATAGTAAGCCATGTGGAGTTCACAGTGAGG +
Preference number: 6 (lower is better)
Translates to: HHNQCQEALGVT*KIVSHVEFTVR
Trigger: CCTCACTGTGAACTCCACATGGCTTACTATTTTCAAAGTCACCCCCAAGGCTTCTTGGCACTGGTTGTGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
CDS CAA 72 bp GCTGCAGGAGTCCCGTTCAAAGTTACAGGAGAGCTCTaGGGGGTGACTTTGAAAATAGTAAGCCATGTGGAG +
Preference number: 6 (lower is better)
Translates to: AAGVPFKVTGEL*GVTLKIVSHVE
Trigger: CTCCACATGGCTTACTATTTTCAAAGTCACCCCCAAGAGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000152237.2
CDS TCA 72 bp TGTGGGTTGCTGGTGATTGATTCTGGGAGGGTAACATaGTCCGCATTGAAGAGGATATTGGCAAAGCCAGAG +
Preference number: 6 (lower is better)
Translates to: CGLLVIDSGRVT*SALKRILAKPE
Trigger: CTCTGGCTTTGCCAATATCCTCTTCAATGCGGATCATGTTACCCTCCCAGAATCAATCACCAGCAACCCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8
ENSMUST00000152237.2
CDS CCA 72 bp GTTCAAAGTTACAGGAGAGCTCTTGGTCACTTTCAGTaGTCACCATGGGGTTGCAGTCTCTCAGAGTCACAT +
Preference number: 6 (lower is better)
Translates to: VQSYRRALGHFQ*SPWGCSLSESH
Trigger: ATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAGAGCTCTCCTGTAACTTTGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095117.10
ENSMUST00000114223.8