Pregenerated sensors for MALL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027377Ensembl transcript IDs: ENSMUST00000028856.3
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCATCTGGGTCCTTTCCCGGCCCCTACAACAGCAGAGCAGCTGCTaGTTCCCCAGGGTTTCTGGGAGGAGTCTGAAGGTAAACCTACGG | + |
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Preference number: 1 (lower is better) Translates to: SIWVLSRPLQQQSSC*FPRVSGRSLKVNLR Trigger: CCGTAGGTTTACCTTCAGACTCCTCCCAGAAACCCTGGGGAATCAGCAGCTGCTCTGCTGTTGTAGGGGCCGGGAAAGGACCCAGATGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR GCA 90 bp | AAACCCAAAGACCCCCAAATGCAAACACCCTTCCAAGATGAGTCCTaGAGGCTGGCCCTGCCCAGAGGGTCCCTAGGAAGAGTTGAGAGT | + |
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Preference number: 1 (lower is better) Translates to: KPKDPQMQTPFQDES*RLALPRGSLGRVES Trigger: ACTCTCAACTCTTCCTAGGGACCCTCTGGGCAGGGCCAGCCTGCAGGACTCATCTTGGAAGGGTGTTTGCATTTGGGGGTCTTTGGGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR CCA 90 bp | CCGGCCCCTACAACAGCAGAGCAGCTGCTGATTCCCCAGGGTTTCTaGGAGGAGTCTGAAGGTAAACCTACGGTTGTGATGTTCCAATCT | + |
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Preference number: 1 (lower is better) Translates to: PAPTTAEQLLIPQGF*EESEGKPTVVMFQS Trigger: AGATTGGAACATCACAACCGTAGGTTTACCTTCAGACTCCTCCCAGAAACCCTGGGGAATCAGCAGCTGCTCTGCTGTTGTAGGGGCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR GCA 90 bp | GATGTTCCAATCTCCTTTGCCGAAGTCTTTTCTAAAGGCCGAGGATaGCTCTGGTCCTTAGGAGGTTGGTCTTTGAAGCTCCACACAGGA | + |
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Preference number: 1 (lower is better) Translates to: DVPISFAEVFSKGRG*LWSLGGWSLKLHTG Trigger: TCCTGTGTGGAGCTTCAAAGACCAACCTCCTAAGGACCAGAGGCATCCTCGGCCTTTAGAAAAGACTTCGGCAAAGGAGATTGGAACATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR GCA 90 bp | CATGCCCAGATGGTGATAAGACAGAGCCCAGCTAACTCTGGAGAGTaGTCATTAGACTTCCTGTTTTTCTTTTCACAAGGTCTGTCCTTG | + |
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Preference number: 1 (lower is better) Translates to: HAQMVIRQSPANSGE*SLDFLFFFSQGLSL Trigger: CAAGGACAGACCTTGTGAAAAGAAAAACAGGAAGTCTAATGAGCACTCTCCAGAGTTAGCTGGGCTCTGTCTTATCACCATCTGGGCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CCA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCTCAGGGCAGCCAGGGTaGGAGGGATCTTCAGGGGAG | + |
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Preference number: 2 (lower is better) Translates to: ELRVHRNECRPPSGSFPGSGQPG*EGSSGE Trigger: CTCCCCTGAAGATCCCTCCCACCCTGGCTGCCCTGA...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR TCA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCCAGCAGAGCAGCTGCTaGTTCCCCAGGGTTTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: ELRVHRNECRPPSGSFPGQQSSC*FPRVSG Trigger: CCCAGAAACCCTGGGGAATCAGCAGCTGCTCTGCTG...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CCA 90 bp | AAAGGGCTGAGACATGCCCAGATGGTGATAAGACAGAGCCCAGCTAACTCTGGACAAAGAGATCCTGGATaGGGGCAACAGCAGGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: KGLRHAQMVIRQSPANSGQRDPG*GQQQGW Trigger: CCACCCCTGCTGTTGCCCCCATCCAGGATCTCTTTG...TCCAGAGTTAGCTGGGCTCTGTCTTATCACCATCTGGGCATGTCTCAGCCCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR GCA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCTGGCATTCTGAACGGTaGCTGAGAGGTTCAAGGTTA | + |
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Preference number: 2 (lower is better) Translates to: ELRVHRNECRPPSGSFPGWHSER*LRGSRL Trigger: TAACCTTGAACCTCTCAGGCACCGTTCAGAATGCCA...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CCA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCATTCCCCAGGGTTTCTaGGAGGAGTCTGAAGGTAAA | + |
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Preference number: 2 (lower is better) Translates to: ELRVHRNECRPPSGSFPGIPQGF*EESEGK Trigger: TTTACCTTCAGACTCCTCCCAGAAACCCTGGGGAAT...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR TCA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCTGCCCTGTAAATTTCTaGAGGATCCAGCGTATGCAT | + |
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Preference number: 2 (lower is better) Translates to: ELRVHRNECRPPSGSFPGCPVNF*RIQRMH Trigger: ATGCATACGCTGGATCCTTCAGAAATTTACAGGGCA...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR TCA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCCCCAAACCCAGCAGCTaGTTTCATCCACAAATTTAT | + |
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Preference number: 2 (lower is better) Translates to: ELRVHRNECRPPSGSFPGPKPSS*FHPQIY Trigger: ATAAATTTGTGGATGAAATCAGCTGCTGGGTTTGGG...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CCA 90 bp | GTTGTGATGTTCCAATCTCCTTTGCCGAAGTCTTTTCTAAAGGCCGAGGATGCCGGTTTATCACCCAGTTaGCAAATGACAAGACCTGCT | + |
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Preference number: 2 (lower is better) Translates to: VVMFQSPLPKSFLKAEDAGLSPS*QMTRPA Trigger: AGCAGGTCTTGTCATTTGCCAACTGGGTGATAAACC...GGCATCCTCGGCCTTTAGAAAAGACTTCGGCAAAGGAGATTGGAACATCACAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CCA 90 bp | GTTGTGATGTTCCAATCTCCTTTGCCGAAGTCTTTTCTAAAGGCCGAGGATGCCGGCAGTCATCTTTGGTaGGGGGATAGTTTTCTCATA | + |
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Preference number: 2 (lower is better) Translates to: VVMFQSPLPKSFLKAEDAGSHLW*GDSFLI Trigger: TATGAGAAAACTATCCCCCCACCAAAGATGACTGCC...GGCATCCTCGGCCTTTAGAAAAGACTTCGGCAAAGGAGATTGGAACATCACAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR GCA 72 bp | GACCCCCAAATGCAAACACCCTTCCAAGATGAGTCCTaGAGGCTGGCCCTGCCCAGAGGGTCCCTAGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: DPQMQTPFQDES*RLALPRGSLGR Trigger: TCTTCCTAGGGACCCTCTGGGCAGGGCCAGCCTGCAGGACTCATCTTGGAAGGGTGTTTGCATTTGGGGGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR CCA 72 bp | ACAACAGCAGAGCAGCTGCTGATTCCCCAGGGTTTCTaGGAGGAGTCTGAAGGTAAACCTACGGTTGTGATG | + |
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Preference number: 3 (lower is better) Translates to: TTAEQLLIPQGF*EESEGKPTVVM Trigger: CATCACAACCGTAGGTTTACCTTCAGACTCCTCCCAGAAACCCTGGGGAATCAGCAGCTGCTCTGCTGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CAA 90 bp | CCCCAGGGTTTCTGGGAGGAGTCTGAAGGTAAACCTACGGTTGTGATGTTCCAACTGGTCCTTAGGAGGTaGGTCTTTGAAGCTCCACAC | + |
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Preference number: 3 (lower is better) Translates to: PQGFWEESEGKPTVVMFQLVLRR*VFEAPH Trigger: GTGTGGAGCTTCAAAGACCAACCTCCTAAGGACCAG...TTGGAACATCACAACCGTAGGTTTACCTTCAGACTCCTCCCAGAAACCCTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CAA 90 bp | GTTGTGATGTTCCAATCTCCTTTGCCGAAGTCTTTTCTAAAGGCCGAGGATGCCATGACAAGACCTGCTTaGAGGGATAATCACGCGGCC | + |
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Preference number: 3 (lower is better) Translates to: VVMFQSPLPKSFLKAEDAMTRPA*RDNHAA Trigger: GGCCGCGTGATTATCCCTCAAAGCAGGTCTTGTCAT...GGCATCCTCGGCCTTTAGAAAAGACTTCGGCAAAGGAGATTGGAACATCACAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR CCA 72 bp | TTTGCCGAAGTCTTTTCTAAAGGCCGAGGATGCCTCTaGTCCTTAGGAGGTTGGTCTTTGAAGCTCCACACA | + |
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Preference number: 3 (lower is better) Translates to: FAEVFSKGRGCL*SLGGWSLKLHT Trigger: TGTGTGGAGCTTCAAAGACCAACCTCCTAAGGACCAGAGGCATCCTCGGCCTTTAGAAAAGACTTCGGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR-3UTR CAA 90 bp | GAGTTGAGAGTACACAGAAATGAGTGTAGACCTCCATCTGGGTCCTTTCCCGGCATGTTCCAATCTCCTTaGCCGAAGTCTTTTCTAAAG | + |
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Preference number: 3 (lower is better) Translates to: ELRVHRNECRPPSGSFPGMFQSP*PKSFLK Trigger: CTTTAGAAAAGACTTCGGCAAAGGAGATTGGAACAT...GCCGGGAAAGGACCCAGATGGAGGTCTACACTCATTTCTGTGTACTCTCAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR TCA 72 bp | TTATTTGCTCGAGGTCATTCAGCAAATACTCAATGGTaGAGATCACAGACAGTTCCCAGGCTAAAGAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: LFARGHSANTQW*RSQTVPRLKKK Trigger: CTTTTTCTTTAGCCTGGGAACTGTCTGTGATCTTCACCATTGAGTATTTGCTGAATGACCTCGAGCAAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR TCA 72 bp | AAGCCTTTGTGTAGACTTGCCTGTTTGAGAAAAGATTaGCTAAGACCTAAATGTATCAGACAGAGCACCATT | + |
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Preference number: 3 (lower is better) Translates to: KPLCRLACLRKD*LRPKCIRQSTI Trigger: AATGGTGCTCTGTCTGATACATTTAGGTCTTAGTCAATCTTTTCTCAAACAGGCAAGTCTACACAAAGGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| CDS-3UTR CCA 90 bp | CTGGGTCCTTTCCCGGCCCCTACAACAGCAGAGCAGCTGCTGATTCCCCAGGGTCAGGCGGGGCGTAGCTaGTGGCCGGCGGTGTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LGPFPAPTTAEQLLIPQGQAGRS*WPAVCP Trigger: GGGACACACCGCCGGCCACCAGCTACGCCCCGCCTG...ACCCTGGGGAATCAGCAGCTGCTCTGCTGTTGTAGGGGCCGGGAAAGGACCCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| CDS-3UTR TCA 90 bp | CAAACACCCTTCCAAGATGAGTCCTGCAGGCTGGCCCTGCCCAGAGGGTCCCTAAGGCAAAGGGGATGGTaGGGAACAAGGCGGCGACCC | + |
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Preference number: 4 (lower is better) Translates to: QTPFQDESCRLALPRGSLRQRGW*GTRRRP Trigger: GGGTCGCCGCCTTGTTCCTCACCATCCCCTTTGCCT...TAGGGACCCTCTGGGCAGGGCCAGCCTGCAGGACTCATCTTGGAAGGGTGTTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| CDS-3UTR TCA 90 bp | CAAACACCCTTCCAAGATGAGTCCTGCAGGCTGGCCCTGCCCAGAGGGTCCCTATGTGGCCCTCAGAAATaGTGGTGGCATATGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: QTPFQDESCRLALPRGSLCGPQK*WWHMLA Trigger: TGCAAGCATATGCCACCATCATTTCTGAGGGCCACA...TAGGGACCCTCTGGGCAGGGCCAGCCTGCAGGACTCATCTTGGAAGGGTGTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR CAA 72 bp | GGTTTATCACCCAGTTGGCAAATGACAAGACCTGCTTaGAGGGATAATCACGCGGCCTCTCAGGTCTCACCG | + |
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Preference number: 4 (lower is better) Translates to: GLSPSWQMTRPA*RDNHAASQVSP Trigger: CGGTGAGACCTGAGAGGCCGCGTGATTATCCCTCAAAGCAGGTCTTGTCATTTGCCAACTGGGTGATAAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| 3UTR CAA 72 bp | GTTCCAGAAAGATGGTCTGTTGGCCCCACGGGTGGCTaGGTGGGTTTATCACCCAGTTGGCAAATGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: VPERWSVGPTGG*VGLSPSWQMTR Trigger: TCTTGTCATTTGCCAACTGGGTGATAAACCCACCAAGCCACCCGTGGGGCCAACAGACCATCTTTCTGGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| CDS-3UTR GCA 90 bp | CCCCAGGGTTTCTGGGAGGAGTCTGAAGGTAAACCTACGGTTGTGATGTTCCAAATGGTGGCATATGCTTaGAGGACAGAGGCACTCATG | + |
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Preference number: 4 (lower is better) Translates to: PQGFWEESEGKPTVVMFQMVAYA*RTEALM Trigger: CATGAGTGCCTCTGTCCTGCAAGCATATGCCACCAT...TTGGAACATCACAACCGTAGGTTTACCTTCAGACTCCTCCCAGAAACCCTGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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| CDS-3UTR CAA 90 bp | TGCAAACACCCTTCCAAGATGAGTCCTGCAGGCTGGCCCTGCCCAGAGGGTCCCGATGGTGGCATATGCTaGCAGGACAGAGGCACTCAT | + |
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Preference number: 5 (lower is better) Translates to: CKHPSKMSPAGWPCPEGPDGGIC*QDRGTH Trigger: ATGAGTGCCTCTGTCCTGCAAGCATATGCCACCATC...GGGACCCTCTGGGCAGGGCCAGCCTGCAGGACTCATCTTGGAAGGGTGTTTGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028856.3 |
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