Pregenerated sensors for MAL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024479Ensembl transcript IDs: ENSMUST00000025356.4
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTTCCAGGGAGTCCAATACTCCAACCATACATGGCACTCTTAGGTaGTGGGTCAGCTCGAGAGCAATTCCCAAGCCTCCATTTCCAAAG | + |
|
Preference number: 1 (lower is better) Translates to: CSRESNTPTIHGTLR*WVSSRAIPKPPFPK Trigger: CTTTGGAAATGGAGGCTTGGGAATTGCTCTCGAGCTGACCCATCACCTAAGAGTGCCATGTATGGTTGGAGTATTGGACTCCCTGGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR CCA 90 bp | GACATCAGTAGCAAGATACTAGATCCAGTAGTGATTAATTGCCTCTaGGGATCATGTCTTAAGTACTCTCGTGTGAGTGCCTTGCTGAGC | + |
|
Preference number: 1 (lower is better) Translates to: DISSKILDPVVINCL*GSCLKYSRVSALLS Trigger: GCTCAGCAAGGCACTCACACGAGAGTACTTAAGACATGATCCCCAGAGGCAATTAATCACTACTGGATCTAGTATCTTGCTACTGATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR GCA 90 bp | AAGAAAGACATCAGTAGCAAGATACTAGATCCAGTAGTGATTAATTaGCTCTGGGGATCATGTCTTAAGTACTCTCGTGTGAGTGCCTTG | + |
|
Preference number: 1 (lower is better) Translates to: KKDISSKILDPVVIN*LWGSCLKYSRVSAL Trigger: CAAGGCACTCACACGAGAGTACTTAAGACATGATCCCCAGAGGCAATTAATCACTACTGGATCTAGTATCTTGCTACTGATGTCTTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR TCA 90 bp | TCTTCTGGGGGAGTATTAGATAAACAGCACTTGAACACTGGGCATTaGTGCTATTCATTCATGTTTTTCACTATGTTCCAGGGAGTCCAA | + |
|
Preference number: 1 (lower is better) Translates to: SSGGVLDKQHLNTGH*CYSFMFFTMFQGVQ Trigger: TTGGACTCCCTGGAACATAGTGAAAAACATGAATGAATAGCATCAATGCCCAGTGTTCAAGTGCTGTTTATCTAATACTCCCCCAGAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR TCA 90 bp | GAACAAAATGAAAATCCCACCCATGTAACAAACCACAGCTTGCACTaGGGTCCTCTCTGTACTAAGCTAACAATGTTTGGAATGTTATAT | + |
|
Preference number: 1 (lower is better) Translates to: EQNENPTHVTNHSLH*GPLCTKLTMFGMLY Trigger: ATATAACATTCCAAACATTGTTAGCTTAGTACAGAGAGGACCTCAGTGCAAGCTGTGGTTTGTTACATGGGTGGGATTTTCATTTTGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR TCA 90 bp | CATACATTTACAAAAGTACCACCAATACATCTGAATGAATTCATTTaGGTTAATACCACACTGAGCATGGCTTGGTACACCTGGGGGAAA | + |
|
Preference number: 1 (lower is better) Translates to: HTFTKVPPIHLNEFI*VNTTLSMAWYTWGK Trigger: TTTCCCCCAGGTGTACCAAGCCATGCTCAGTGTGGTATTAACTCAAATGAATTCATTCAGATGTATTGGTGGTACTTTTGTAAATGTATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR TCA 90 bp | TTGTTCAAGTGCTTCATCGCTCAGCTCACAACATCTAGAATGCAATaGATCTACAGACCTAAGTATTCACAGTTAGTCAGCTTTGAGTTT | + |
|
Preference number: 1 (lower is better) Translates to: LFKCFIAQLTTSRMQ*IYRPKYSQLVSFEF Trigger: AAACTCAAAGCTGACTAACTGTGAATACTTAGGTCTGTAGATTCATTGCATTCTAGATGTTGTGAGCTGAGCGATGAAGCACTTGAACAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR TCA 90 bp | ATGTTTTTCACTATGTTCCAGGGAGTCCAATACTCCAACCATACATGGCACTCTAACTGTGGTCACTCATaGTCTGTTGCCAAGCCTGCG | + |
|
Preference number: 2 (lower is better) Translates to: MFFTMFQGVQYSNHTWHSNCGHS*SVAKPA Trigger: CGCAGGCTTGGCAACAGATCATGAGTGACCACAGTT...AGAGTGCCATGTATGGTTGGAGTATTGGACTCCCTGGAACATAGTGAAAAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR GCA 90 bp | GGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCATAAGATTTCCTACCTTATTTTaGTCTTCATCCAAGGCTCTG | + |
|
Preference number: 2 (lower is better) Translates to: GGKSGILEELRHEWKAIRFPTLF*SSSKAL Trigger: CAGAGCCTTGGATGAAGAGCAAAATAAGGTAGGAAA...TCTTATGGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR CCA 90 bp | GGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCATAAGATATGTTATCATAGGATaGAACAATTGCCACAGAGGC | + |
|
Preference number: 2 (lower is better) Translates to: GGKSGILEELRHEWKAIRYVIIG*NNCHRG Trigger: GCCTCTGTGGCAATTGTTCCATCCTATGATAACATA...TCTTATGGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR GCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTGTACTCTCGTGTGAGTaGCTTGCTGAGCTATTAGGA | + |
|
Preference number: 2 (lower is better) Translates to: LVDYILVIPRTMYLYGTFVLSCE*LAELLG Trigger: TCCTAATAGCTCAGCAAGGCACTCACACGAGAGTAC...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR CCA 90 bp | TCCTACCTTATTTTGCTCTTCATCCAAGGCTCTGCTGGGGTTAGCTTGAGAAATTTTGGAATGTTATATTaGGACAAATGGTACCCAAGT | + |
|
Preference number: 2 (lower is better) Translates to: SYLILLFIQGSAGVSLRNFGMLY*DKWYPS Trigger: ACTTGGGTACCATTTGTCCCAATATAACATTCCAAA...ATTTCTCAAGCTAACCCCAGCAGAGCCTTGGATGAAGAGCAAAATAAGGTAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR GCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTGACCACATCCAGTTTTaGTCCCTTTTTGAAATAAGC | + |
|
Preference number: 2 (lower is better) Translates to: LVDYILVIPRTMYLYGTFDHIQF*SLFEIS Trigger: GCTTATTTCAAAAAGGGAGCAAAACTGGATGTGGTC...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR TCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTTATAAAGTAGACAAATaGAACCAGCACACAACTGTC | + |
|
Preference number: 2 (lower is better) Translates to: LVDYILVIPRTMYLYGTFYKVDK*NQHTTV Trigger: GACAGTTGTGTGCTGGTTTCATTTGTCTACTTTATA...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR TCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTAACATCAGAACAAAATaGAAATCCCACCCATGTAAC | + |
|
Preference number: 2 (lower is better) Translates to: LVDYILVIPRTMYLYGTFNIRTK*KSHPCN Trigger: GTTACATGGGTGGGATTTTCATTTTGTTCTGATGTT...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR TCA 90 bp | AAGGTTTTTATGGCAGTAGTTGATAAAATTATGGTCTGTAGACCACATCCAGTTAAAGATAGAATTAGATaGGAAGCCTGCATGAGATGT | + |
|
Preference number: 2 (lower is better) Translates to: KVFMAVVDKIMVCRPHPVKDRIR*EACMRC Trigger: ACATCTCATGCAGGCTTCTCATCTAATTCTATCTTT...AACTGGATGTGGTCTACAGACCATAATTTTATCAACTACTGCCATAAAAACCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR GCA 90 bp | AAGGTTTTTATGGCAGTAGTTGATAAAATTATGGTCTGTAGACCACATCCAGTTCACATCATCTGTAGCTaGTTTTATGTTATCATAGGA | + |
|
Preference number: 2 (lower is better) Translates to: KVFMAVVDKIMVCRPHPVHIICS*FYVIIG Trigger: TCCTATGATAACATAAAAGCAGCTACAGATGATGTG...AACTGGATGTGGTCTACAGACCATAATTTTATCAACTACTGCCATAAAAACCTT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR CCA 72 bp | CTCATGATCTGTTGCCAAGCCTGCGACACATACAGGTaGACTAGGATTGTTTTCTGTTCTATTCAGCCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: LMICCQACDTYR*TRIVFCSIQPD Trigger: ATCTGGCTGAATAGAACAGAAAACAATCCTAGTCCACCTGTATGTGTCGCAGGCTTGGCAACAGATCATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR CAA 90 bp | GGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCATAAGATCTGCTGGGGTTAGCTaGAGAAATTATATGACCTTC | + |
|
Preference number: 3 (lower is better) Translates to: GGKSGILEELRHEWKAIRSAGVS*RNYMTF Trigger: GAAGGTCATATAATTTCTCAAGCTAACCCCAGCAGA...TCTTATGGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR CAA 90 bp | AAAACAGGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCACAGGTGGACTAGGATaGTTTTCTGTTCTATTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: KTGGKSGILEELRHEWKATGGLG*FSVLFS Trigger: GCTGAATAGAACAGAAAACAATCCTAGTCCACCTGT...GGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCCTGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR-3UTR CAA 90 bp | AAAACAGGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCATTTCCTACCTTATTTaGCTCTTCATCCAAGGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: KTGGKSGILEELRHEWKAISYLI*LFIQGS Trigger: AGAGCCTTGGATGAAGAGCAAAATAAGGTAGGAAAT...GGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCCTGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR GCA 72 bp | ATCAGTAGCAAGATACTAGATCCAGTAGTGATTAATTaGCTCTGGGGATCATGTCTTAAGTACTCTCGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: ISSKILDPVVIN*LWGSCLKYSRV Trigger: CACACGAGAGTACTTAAGACATGATCCCCAGAGGCAATTAATCACTACTGGATCTAGTATCTTGCTACTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR TCA 90 bp | AAAACAGGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCCTGTGGCGGCCACGTTaGTGTTATACTGGTTGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: KTGGKSGILEELRHEWKALWRPR*CYTGCR Trigger: ACGACAACCAGTATAACATCAACGTGGCCGCCACAG...GGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCCTGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR TCA 90 bp | GGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCATAAGAAACAAGCTGTTGTCATaGAGGCAAAAACTGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: GGKSGILEELRHEWKAIRNKLLS*RQKLWR Trigger: CCGCCACAGTTTTTGCCTTCATGACAACAGCTTGTT...TCTTATGGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| 3UTR CAA 72 bp | GTTGCCAAGCCTGCGACACATACAGGTGGACTAGGATaGTTTTCTGTTCTATTCAGCCAGATCCAGTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: VAKPATHTGGLG*FSVLFSQIQFL Trigger: CAAAAACTGGATCTGGCTGAATAGAACAGAAAACAATCCTAGTCCACCTGTATGTGTCGCAGGCTTGGCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR GCA 90 bp | GGAGGGAAGTCTGGCATTTTAGAAGAGCTAAGACATGAGTGGAAAGCCATAAGAAAGCCAGACCCAAACTaGAACCATAACAAGCTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: GGKSGILEELRHEWKAIRKPDPN*NHNKLL Trigger: CAACAGCTTGTTATGGTTGCAGTTTGGGTCTGGCTT...TCTTATGGCTTTCCACTCATGTCTTAGCTCTTCTAAAATGCCAGACTTCCCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR CCA 90 bp | TCCTACCTTATTTTGCTCTTCATCCAAGGCTCTGCTGGGGTTAGCTTGAGAAATGAGGTAGAGGAACATTaGAGGAAGCAACCAAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: SYLILLFIQGSAGVSLRNEVEEH*RKQPKS Trigger: GGATTTTGGTTGCTTCCTCCAATGTTCCTCTACCTC...ATTTCTCAAGCTAACCCCAGCAGAGCCTTGGATGAAGAGCAAAATAAGGTAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR TCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTTCACCGACACAAACATaGCCCATCCTTGGAGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LVDYILVIPRTMYLYGTFSPTQT*PILGAE Trigger: CTCTGCTCCAAGGATGGGTCATGTTTGTGTCGGTGA...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR TCA 90 bp | AAAGACATCAGTAGCAAGATACTAGATCCAGTAGTGATTAATTGCCTCTGGGGATATACTGGTTGTCGTTaGGTAGTGGCTTCACAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: KDISSKILDPVVINCLWGYTGCR*VVASQS Trigger: TGACTGTGAAGCCACTACTCAACGACAACCAGTATA...TCCCCAGAGGCAATTAATCACTACTGGATCTAGTATCTTGCTACTGATGTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR GCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTCAGTCATGGTTGTGTTaGACTGAAGGTCATGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: LVDYILVIPRTMYLYGTFQSWLC*TEGHAG Trigger: CCCTGCATGACCTTCAGTGCAACACAACCATGACTG...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR CCA 90 bp | CTAGTGGACTACATTTTAGTGATTCCACGTACAATGTATCTTTATGGCACATTTAACATGACCCATCCTTaGAGCAGAGGTAGAGGAACA | + |
|
Preference number: 4 (lower is better) Translates to: LVDYILVIPRTMYLYGTFNMTHP*SRGRGT Trigger: TGTTCCTCTACCTCTGCTCCAAGGATGGGTCATGTT...AAATGTGCCATAAAGATACATTGTACGTGGAATCACTAAAATGTAGTCCACTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR CCA 90 bp | AAGGTTTTTATGGCAGTAGTTGATAAAATTATGGTCTGTAGACCACATCCAGTTCCAGGAAGTTCCAGTTaGCATCAATCTGAGTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: KVFMAVVDKIMVCRPHPVPGSSS*HQSESP Trigger: TGGTGACTCAGATTGATGCCAACTGGAACTTCCTGG...AACTGGATGTGGTCTACAGACCATAATTTTATCAACTACTGCCATAAAAACCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CCA 90 bp | GCTTCACAGTCATGGTTGTGTTGCACTGAAGGTCATGCAGGGAGGTaGCCGCTGCTTCCAGTAAAAACGCTCCGAAGTAGAAGACAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: ASQSWLCCTEGHAGR*PLLPVKTLRSRRQR Trigger: TCTTTGTCTTCTACTTCGGAGCGTTTTTACTGGAAGCAGCGGCCACCTCCCTGCATGACCTTCAGTGCAACACAACCATGACTGTGAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR CAA 90 bp | ATGTTTTTCACTATGTTCCAGGGAGTCCAATACTCCAACCATACATGGCACTCTACTGTGGCGGCCACGTaGATGTTATACTGGTTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: MFFTMFQGVQYSNHTWHSTVAAT*MLYWLS Trigger: CGACAACCAGTATAACATCAACGTGGCCGCCACAGT...AGAGTGCCATGTATGGTTGGAGTATTGGACTCCCTGGAACATAGTGAAAAACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS TCA 90 bp | CCGCTGCTTCCAGTAAAAACGCTCCGAAGTAGAAGACAAAGACTATaGAATGGTAGACAAAATCCAGGAAGTTCCAGTTGGCATCAATCT | + |
|
Preference number: 5 (lower is better) Translates to: PLLPVKTLRSRRQRL*NGRQNPGSSSWHQS Trigger: AGATTGATGCCAACTGGAACTTCCTGGATTTTGTCTACCATTTCATAGTCTTTGTCTTCTACTTCGGAGCGTTTTTACTGGAAGCAGCGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS-3UTR CAA 90 bp | AAAGACATCAGTAGCAAGATACTAGATCCAGTAGTGATTAATTGCCTCTGGGGAGCTTCACAGTCATGGTaGTGTTGCACTGAAGGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: KDISSKILDPVVINCLWGASQSW*CCTEGH Trigger: ATGACCTTCAGTGCAACACAACCATGACTGTGAAGC...TCCCCAGAGGCAATTAATCACTACTGGATCTAGTATCTTGCTACTGATGTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS TCA 72 bp | TTGAGTAGTGGCTTCACAGTCATGGTTGTGTTGCACTaGAGGTCATGCAGGGAGGTGGCCGCTGCTTCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: LSSGFTVMVVLH*RSCREVAAASS Trigger: ACTGGAAGCAGCGGCCACCTCCCTGCATGACCTTCAGTGCAACACAACCATGACTGTGAAGCCACTACTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CCA 72 bp | TCATGGTTGTGTTGCACTGAAGGTCATGCAGGGAGGTaGCCGCTGCTTCCAGTAAAAACGCTCCGAAGTAGA | + |
|
Preference number: 6 (lower is better) Translates to: SWLCCTEGHAGR*PLLPVKTLRSR Trigger: TCTACTTCGGAGCGTTTTTACTGGAAGCAGCGGCCACCTCCCTGCATGACCTTCAGTGCAACACAACCATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CCA 72 bp | AAGAAAGCTGTCACCGACACAAACATGACCCATCCTTaGAGCAGAGGTAGAGGAACATTGGAGGAAGCAACC | + |
|
Preference number: 6 (lower is better) Translates to: KKAVTDTNMTHP*SRGRGTLEEAT Trigger: GGTTGCTTCCTCCAATGTTCCTCTACCTCTGCTCCAAGGATGGGTCATGTTTGTGTCGGTGACAGCTTTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CAA 72 bp | ACTGTGGCGGCCACGTTGATGTTATACTGGTTGTCGTaGAGTAGTGGCTTCACAGTCATGGTTGTGTTGCAC | + |
|
Preference number: 6 (lower is better) Translates to: TVAATLMLYWLS*SSGFTVMVVLH Trigger: GTGCAACACAACCATGACTGTGAAGCCACTACTCAACGACAACCAGTATAACATCAACGTGGCCGCCACAGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CAA 90 bp | ACCGACACAAACATGACCCATCCTTGGAGCAGAGGTAGAGGAACATaGGAGGAAGCAACCAAAATCCAGACAAGTCCTCCAAGCACAATC | + |
|
Preference number: 6 (lower is better) Translates to: TDTNMTHPWSRGRGT*EEATKIQTSPPSTI Trigger: GATTGTGCTTGGAGGACTTGTCTGGATTTTGGTTGCTTCCTCCAATGTTCCTCTACCTCTGCTCCAAGGATGGGTCATGTTTGTGTCGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CAA 72 bp | GCAAAAACTGTGGCGGCCACGTTGATGTTATACTGGTaGTCGTTGAGTAGTGGCTTCACAGTCATGGTTGTG | + |
|
Preference number: 6 (lower is better) Translates to: AKTVAATLMLYW*SLSSGFTVMVV Trigger: CACAACCATGACTGTGAAGCCACTACTCAACGACAACCAGTATAACATCAACGTGGCCGCCACAGTTTTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||
| CDS CAA 72 bp | GCTGTTGTCATGAAGGCAAAAACTGTGGCGGCCACGTaGATGTTATACTGGTTGTCGTTGAGTAGTGGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: AVVMKAKTVAAT*MLYWLSLSSGF Trigger: GAAGCCACTACTCAACGACAACCAGTATAACATCAACGTGGCCGCCACAGTTTTTGCCTTCATGACAACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025356.4 |
||