Pregenerated sensors for MAL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027375Ensembl transcript IDs: ENSMUST00000028853.7, ENSMUST00000028854.15
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTCAGACATCCCTCACCTGGAGTGTGGCAGCCAGAGATAGCCATTaGCTCTCACTTTGCTCTAGAGTCAGGTCCCTTTCTCCCACAAGG | + |
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Preference number: 1 (lower is better) Translates to: GQTSLTWSVAARDSH*LSLCSRVRSLSPTR Trigger: CCTTGTGGGAGAAAGGGACCTGACTCTAGAGCAAAGTGAGAGGCAATGGCTATCTCTGGCTGCCACACTCCAGGTGAGGGATGTCTGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CCA 90 bp | CCTGGTGGACACTGTTGTGAGGGTGGCGTCCTCAGTGAGTCACTTTaGGAAAGACTGGCCCAGCACACACATCTGAACTGTCCCTTGAGA | + |
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Preference number: 1 (lower is better) Translates to: PGGHCCEGGVLSESL*ERLAQHTHLNCPLR Trigger: TCTCAAGGGACAGTTCAGATGTGTGTGCTGGGCCAGTCTTTCCCAAAGTGACTCACTGAGGACGCCACCCTCACAACAGTGTCCACCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR GCA 90 bp | CTCACCTGGAGTGTGGCAGCCAGAGATAGCCATTGCCTCTCACTTTaGTCTAGAGTCAGGTCCCTTTCTCCCACAAGGAGTGGTCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: LTWSVAARDSHCLSL*SRVRSLSPTRSGLR Trigger: TCTCAGACCACTCCTTGTGGGAGAAAGGGACCTGACTCTAGAGCAAAGTGAGAGGCAATGGCTATCTCTGGCTGCCACACTCCAGGTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 90 bp | TCCTCAGAGCTTGAGAAGACTCTAATTCAGCAGACTGTTGTGCCTTaGAAGACAAAGGCAGAGCTCTACGGGATGTGTCTACAAGGGAGA | + |
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Preference number: 1 (lower is better) Translates to: SSELEKTLIQQTVVP*KTKAELYGMCLQGR Trigger: TCTCCCTTGTAGACACATCCCGTAGAGCTCTGCCTTTGTCTTTCAAGGCACAACAGTCTGCTGAATTAGAGTCTTCTCAAGCTCTGAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 90 bp | TCCCTTGAGAATCAGGTTAATCAAAGGACTCTGCAGGAAGAAAGTTaGACAGGAAGGTGTCCCTGGTCCTCAAGAATGAAAGACATCCCT | + |
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Preference number: 1 (lower is better) Translates to: SLENQVNQRTLQEES*TGRCPWSSRMKDIP Trigger: AGGGATGTCTTTCATTCTTGAGGACCAGGGACACCTTCCTGTTCAACTTTCTTCCTGCAGAGTCCTTTGATTAACCTGATTCTCAAGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR GCA 90 bp | ACACATCTGAACTGTCCCTTGAGAATCAGGTTAATCAAAGGACTCTaGAGGAAGAAAGTTGAACAGGAAGGTGTCCCTGGTCCTCAAGAA | + |
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Preference number: 1 (lower is better) Translates to: THLNCPLRIRLIKGL*RKKVEQEGVPGPQE Trigger: TTCTTGAGGACCAGGGACACCTTCCTGTTCAACTTTCTTCCTGCAGAGTCCTTTGATTAACCTGATTCTCAAGGGACAGTTCAGATGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 90 bp | CAAAAGTATTTAATGAAGCATTTCAAAGGAGCTCATCTTCCACTGTaGACGTCCGGAGACCTCTGTTGGGTGAATTTCAGTGCCTGTGAC | + |
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Preference number: 1 (lower is better) Translates to: QKYLMKHFKGAHLPL*TSGDLCWVNFSACD Trigger: GTCACAGGCACTGAAATTCACCCAACAGAGGTCTCCGGACGTTCACAGTGGAAGATGAGCTCCTTTGAAATGCTTCATTAAATACTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CCA 90 bp | GGCTGTGTTAAGTGGGCAAATGGTGAATTCAGATACCAGTATGGCTaGGATAACCAAAGTCCTTCTGAATGTGCCAGTGAGATCCAATTT | + |
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Preference number: 1 (lower is better) Translates to: GCVKWANGEFRYQYG*DNQSPSECASEIQF Trigger: AAATTGGATCTCACTGGCACATTCAGAAGGACTTTGGTTATCCCAGCCATACTGGTATCTGAATTCACCATTTGCCCACTTAACACAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR TCA 90 bp | ATCTCCTGGTGGCTGGCAGGACATCCCTGCATCTGGGACTCCATCTCTAGGATGATGGGGAAGATGGGCTaGCCAGTTAATTGCATCTGG | + |
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Preference number: 2 (lower is better) Translates to: ISWWLAGHPCIWDSISRMMGKMG*PVNCIW Trigger: CCAGATGCAATTAACTGGTCAGCCCATCTTCCCCAT...CATCCTAGAGATGGAGTCCCAGATGCAGGGATGTCCTGCCAGCCACCAGGAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR TCA 90 bp | GAGCTCTACGGGATGTGTCTACAAGGGAGACGCTATCCTGGTGGACACTGTTGTAGACATGCCAGGGGATaGGTGCTCAAAAGAGCCCTT | + |
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Preference number: 2 (lower is better) Translates to: ELYGMCLQGRRYPGGHCCRHARG*VLKRAL Trigger: AAGGGCTCTTTTGAGCACTCATCCCCTGGCATGTCT...ACAACAGTGTCCACCAGGATAGCGTCTCCCTTGTAGACACATCCCGTAGAGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR CCA 90 bp | GTGAGATCCAATTTGGGGCTGATGATGGGATCTGGTAGAAGAGTGCTTACCCAGCAGACATCCCTCACCTaGAGTGTGGCAGCCAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: VRSNLGLMMGSGRRVLTQQTSLT*SVAARD Trigger: ATCTCTGGCTGCCACACTCCAGGTGAGGGATGTCTG...CTGGGTAAGCACTCTTCTACCAGATCCCATCATCAGCCCCAAATTGGATCTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR TCA 90 bp | TTCTCCCACAAGGAGTGGTCTGAGAACATGTCCAAACACATCAAGAGACTGCAGCTGCAGGAAGAAAGTTaGACAGGAAGGTGTCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: FSHKEWSENMSKHIKRLQLQEES*TGRCPW Trigger: CCAGGGACACCTTCCTGTTCAACTTTCTTCCTGCAG...CTGCAGTCTCTTGATGTGTTTGGACATGTTCTCAGACCACTCCTTGTGGGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR GCA 90 bp | GAGCTCTACGGGATGTGTCTACAAGGGAGACGCTATCCTGGTGGACACTGTTGTACAAAGACTAAGACATaGCAGGGGATGAGTGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: ELYGMCLQGRRYPGGHCCTKTKT*QGMSAQ Trigger: TTGAGCACTCATCCCCTGGCATGTCTTAGTCTTTGT...ACAACAGTGTCCACCAGGATAGCGTCTCCCTTGTAGACACATCCCGTAGAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CAA 90 bp | GCTGGGATAACCAAAGTCCTTCTGAATGTGCCAGTGAGATCCAATTaGGGGCTGATGATGGGATCTGGTAGAAGAGTGCTTACCCAGCAT | + |
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Preference number: 2 (lower is better) Translates to: AGITKVLLNVPVRSN*GLMMGSGRRVLTQH Trigger: ATGCTGGGTAAGCACTCTTCTACCAGATCCCATCATCAGCCCCAAATTGGATCTCACTGGCACATTCAGAAGGACTTTGGTTATCCCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR TCA 90 bp | GAGCTCTACGGGATGTGTCTACAAGGGAGACGCTATCCTGGTGGACACTGTTGTTCCCCACCTGAAGCATaGGACACAAAAGTATTTAAT | + |
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Preference number: 2 (lower is better) Translates to: ELYGMCLQGRRYPGGHCCSPPEA*DTKVFN Trigger: ATTAAATACTTTTGTGTCTCATGCTTCAGGTGGGGA...ACAACAGTGTCCACCAGGATAGCGTCTCCCTTGTAGACACATCCCGTAGAGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGCAAATGGTGAATTCAGATACCAGTATGGCTGGGATAACCAAAGTCCTTCTCAGTGAGTCACTTTaGGAAAGACTGGCCCAGCAC | + |
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Preference number: 2 (lower is better) Translates to: SGQMVNSDTSMAGITKVLLSESL*ERLAQH Trigger: GTGCTGGGCCAGTCTTTCCCAAAGTGACTCACTGAG...AAGGACTTTGGTTATCCCAGCCATACTGGTATCTGAATTCACCATTTGCCCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR TCA 90 bp | GTGAGATCCAATTTGGGGCTGATGATGGGATCTGGTAGAAGAGTGCTTACCCAGGACGCGAATATGGCTTaGATATGGCTTCCTTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: VRSNLGLMMGSGRRVLTQDANMA*IWLPFV Trigger: AACAAAAGGAAGCCATATTCAAGCCATATTCGCGTC...CTGGGTAAGCACTCTTCTACCAGATCCCATCATCAGCCCCAAATTGGATCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR CCA 90 bp | ACACATCTGAACTGTCCCTTGAGAATCAGGTTAATCAAAGGACTCTGCAGGAAGTCCGGAGACCTCTGTTaGGTGAATTTCAGTGCCTGT | + |
|
Preference number: 2 (lower is better) Translates to: THLNCPLRIRLIKGLCRKSGDLC*VNFSAC Trigger: ACAGGCACTGAAATTCACCCAACAGAGGTCTCCGGA...CTTCCTGCAGAGTCCTTTGATTAACCTGATTCTCAAGGGACAGTTCAGATGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CAA 90 bp | TCACTTTGGGAAAGACTGGCCCAGCACACACATCTGAACTGTCCCTaGAGAATCAGGTTAATCAAAGGACTCTGCAGGAAGAAAGTTGAA | + |
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Preference number: 2 (lower is better) Translates to: SLWERLAQHTHLNCP*RIRLIKGLCRKKVE Trigger: TTCAACTTTCTTCCTGCAGAGTCCTTTGATTAACCTGATTCTCAAGGGACAGTTCAGATGTGTGTGCTGGGCCAGTCTTTCCCAAAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR CCA 90 bp | CAGTATGGCTGGGATAACCAAAGTCCTTCTGAATGTGCCAGTGAGATCCAATTTACAGGAAGGTGTCCCTaGTCCTCAAGAATGAAAGAC | + |
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Preference number: 2 (lower is better) Translates to: QYGWDNQSPSECASEIQFTGRCP*SSRMKD Trigger: GTCTTTCATTCTTGAGGACCAGGGACACCTTCCTGT...AAATTGGATCTCACTGGCACATTCAGAAGGACTTTGGTTATCCCAGCCATACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGCAAATGGTGAATTCAGATACCAGTATGGCTGGGATAACCAAAGTCCTTTTCTCCCACAAGGAGTaGTCTGAGAACATGTCCAAA | + |
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Preference number: 2 (lower is better) Translates to: SGQMVNSDTSMAGITKVLFSHKE*SENMSK Trigger: TTTGGACATGTTCTCAGACCACTCCTTGTGGGAGAA...AAGGACTTTGGTTATCCCAGCCATACTGGTATCTGAATTCACCATTTGCCCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CCA 72 bp | CACTGTTGTGAGGGTGGCGTCCTCAGTGAGTCACTTTaGGAAAGACTGGCCCAGCACACACATCTGAACTGT | + |
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Preference number: 3 (lower is better) Translates to: HCCEGGVLSESL*ERLAQHTHLNC Trigger: ACAGTTCAGATGTGTGTGCTGGGCCAGTCTTTCCCAAAGTGACTCACTGAGGACGCCACCCTCACAACAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 72 bp | CTAGAGTCAGGTCCCTTTCTCCCACAAGGAGTGGTCTaGGAACATGTCCAAACACATCAAGAGACTGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: LESGPFLPQGVV*EHVQTHQETAD Trigger: GTCTGCAGTCTCTTGATGTGTTTGGACATGTTCTCAGACCACTCCTTGTGGGAGAAAGGGACCTGACTCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 72 bp | AGTCTGTGTTCTAGGAAGTTAATGGGGAAGATGGGCTaGCCAGTTAATTGCATCTGGGTCTCAGCTCCCGAT | + |
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Preference number: 3 (lower is better) Translates to: SLCSRKLMGKMG*PVNCIWVSAPD Trigger: ATCGGGAGCTGAGACCCAGATGCAATTAACTGGTCAGCCCATCTTCCCCATTAACTTCCTAGAACACAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028853.7 ENSMUST00000028854.15 |
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| 3UTR-3UTR CAA 90 bp | AGATCCAATTTGGGGCTGATGATGGGATCTGGTAGAAGAGTGCTTACCCAGCATAGACGCGAATATGGCTaGAATATGGCTTCCTTTTGT | + |
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Preference number: 3 (lower is better) Translates to: RSNLGLMMGSGRRVLTQHRREYG*NMASFC Trigger: ACAAAAGGAAGCCATATTCAAGCCATATTCGCGTCT...ATGCTGGGTAAGCACTCTTCTACCAGATCCCATCATCAGCCCCAAATTGGATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 72 bp | CTTGAGAAGACTCTAATTCAGCAGACTGTTGTGCCTTaGAAGACAAAGGCAGAGCTCTACGGGATGTGTCTA | + |
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Preference number: 3 (lower is better) Translates to: LEKTLIQQTVVP*KTKAELYGMCL Trigger: TAGACACATCCCGTAGAGCTCTGCCTTTGTCTTTCAAGGCACAACAGTCTGCTGAATTAGAGTCTTCTCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CCA 72 bp | AAGTGGGCAAATGGTGAATTCAGATACCAGTATGGCTaGGATAACCAAAGTCCTTCTGAATGTGCCAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: KWANGEFRYQYG*DNQSPSECASE Trigger: CTCACTGGCACATTCAGAAGGACTTTGGTTATCCCAGCCATACTGGTATCTGAATTCACCATTTGCCCACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 72 bp | TTAATGAAGCATTTCAAAGGAGCTCATCTTCCACTGTaGACGTCCGGAGACCTCTGTTGGGTGAATTTCAGT | + |
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Preference number: 3 (lower is better) Translates to: LMKHFKGAHLPL*TSGDLCWVNFS Trigger: ACTGAAATTCACCCAACAGAGGTCTCCGGACGTTCACAGTGGAAGATGAGCTCCTTTGAAATGCTTCATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 72 bp | ATAGAAAGAATGCCCACACCTAGTTTCCTCAGAGCTTaGGAAGACTCTAATTCAGCAGACTGTTGTGCCTTG | + |
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Preference number: 3 (lower is better) Translates to: IERMPTPSFLRA*EDSNSADCCAL Trigger: CAAGGCACAACAGTCTGCTGAATTAGAGTCTTCTCAAGCTCTGAGGAAACTAGGTGTGGGCATTCTTTCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR TCA 72 bp | AATCAGGTTAATCAAAGGACTCTGCAGGAAGAAAGTTaGACAGGAAGGTGTCCCTGGTCCTCAAGAATGAAA | + |
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Preference number: 3 (lower is better) Translates to: NQVNQRTLQEES*TGRCPWSSRMK Trigger: TTTCATTCTTGAGGACCAGGGACACCTTCCTGTTCAACTTTCTTCCTGCAGAGTCCTTTGATTAACCTGATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CCA 72 bp | ACAGAAGGTAAACATAACACCCAAGAGACGCGAATATaGCTTGAATATGGCTTCCTTTTGTTTTTGTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: TEGKHNTQETRI*LEYGFLLFLCL Trigger: CAAACACAAAAACAAAAGGAAGCCATATTCAAGCCATATTCGCGTCTCTTGGGTGTTATGTTTACCTTCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR GCA 90 bp | ATCTCCTGGTGGCTGGCAGGACATCCCTGCATCTGGGACTCCATCTCTAGGATGCACTGGGCAGGGTGCTaGCACCCGAAGCCGCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: ISWWLAGHPCIWDSISRMHWAGC*HPKPLP Trigger: CGGCAGCGGCTTCGGGTGGCAGCACCCTGCCCAGTG...CATCCTAGAGATGGAGTCCCAGATGCAGGGATGTCCTGCCAGCCACCAGGAGAT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR GCA 90 bp | AAAGGACTCTGCAGGAAGAAAGTTGAACAGGAAGGTGTCCCTGGTCCTCAAGAAAGCCACTGGGCAGGGTaGTGCCACCCGAAGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: KGLCRKKVEQEGVPGPQESHWAG*CHPKPL Trigger: CAGCGGCTTCGGGTGGCAGCACCCTGCCCAGTGGCT...TTCTTGAGGACCAGGGACACCTTCCTGTTCAACTTTCTTCCTGCAGAGTCCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR TCA 90 bp | CTCTACGGGATGTGTCTACAAGGGAGACGCTATCCTGGTGGACACTGTTGTGAGAGTCAGGGAAGGTGGTaGAGACCGAGAAGCCACTGG | + |
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Preference number: 4 (lower is better) Translates to: LYGMCLQGRRYPGGHCCESQGRW*RPRSHW Trigger: CCAGTGGCTTCTCGGTCTTCACCACCTTCCCTGACT...CTCACAACAGTGTCCACCAGGATAGCGTCTCCCTTGTAGACACATCCCGTAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR TCA 90 bp | GTCTACAAGGGAGACGCTATCCTGGTGGACACTGTTGTGAGGGTGGCGTCCTCACCAGAACTGAGGCACTaGGGTAAAATAGGGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VYKGDAILVDTVVRVASSPELRH*GKIGQP Trigger: TGGCTGCCCTATTTTACCTCAGTGCCTCAGTTCTGG...TGAGGACGCCACCCTCACAACAGTGTCCACCAGGATAGCGTCTCCCTTGTAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR TCA 90 bp | ATCAAGGTTCCCAGTTCCCACCAACTGTCCCGGTCAAGGGCAAAAAGGTCCCCTCCACGTAGATCAGAGTaGCCACGTAGGCAAACACCA | + |
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Preference number: 4 (lower is better) Translates to: IKVPSSHQLSRSRAKRSPPRRSE*PRRQTP Trigger: TGGTGTTTGCCTACGTGGTCACTCTGATCTACGTGG...AGGGGACCTTTTTGCCCTTGACCGGGACAGTTGGTGGGAACTGGGAACCTTGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR CCA 90 bp | AAGTGTAAATCGTCATTTCTTCAGATCAAGGTTCCCAGTTCCCACCAACTGTCCAGACCGAGAAGCCACTaGGCAGGGTGCTGCCACCCG | + |
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Preference number: 4 (lower is better) Translates to: KCKSSFLQIKVPSSHQLSRPRSH*AGCCHP Trigger: CGGGTGGCAGCACCCTGCCCAGTGGCTTCTCGGTCT...GGACAGTTGGTGGGAACTGGGAACCTTGATCTGAAGAAATGACGATTTACACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR CCA 90 bp | AAGCTGACTGAGGCTAGAATCCTGAATCTCCTGGTGGCTGGCAGGACATCCCTGTCATCAGGGAAGTGGTaGCCACAAAGCAGAACACAG | + |
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Preference number: 4 (lower is better) Translates to: KLTEARILNLLVAGRTSLSSGKW*PQSRTQ Trigger: CTGTGTTCTGCTTTGTGGCCACCACTTCCCTGATGA...CAGGGATGTCCTGCCAGCCACCAGGAGATTCAGGATTCTAGCCTCAGTCAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR CCA 90 bp | GTGAGATCCAATTTGGGGCTGATGATGGGATCTGGTAGAAGAGTGCTTACCCAGCAAACATTGAGATGGTaGCCAGGGCTTCCAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: VRSNLGLMMGSGRRVLTQQTLRW*PGLPEL Trigger: CAGTTCTGGAAGCCCTGGCCACCATCTCAATGTTTG...CTGGGTAAGCACTCTTCTACCAGATCCCATCATCAGCCCCAAATTGGATCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CAA 72 bp | GAAAGACTGGCCCAGCACACACATCTGAACTGTCCCTaGAGAATCAGGTTAATCAAAGGACTCTGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ERLAQHTHLNCP*RIRLIKGLCRK Trigger: CTTCCTGCAGAGTCCTTTGATTAACCTGATTCTCAAGGGACAGTTCAGATGTGTGTGCTGGGCCAGTCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR TCA 90 bp | TCACTTTGCTCTAGAGTCAGGTCCCTTTCTCCCACAAGGAGTGGTCTGAGAACAGAAGTCTCACCGCCATaGGTACCAATTATGTACAAG | + |
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Preference number: 4 (lower is better) Translates to: SLCSRVRSLSPTRSGLRTEVSPP*VPIMYK Trigger: CTTGTACATAATTGGTACTCATGGCGGTGAGACTTC...TGTTCTCAGACCACTCCTTGTGGGAGAAAGGGACCTGACTCTAGAGCAAAGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CAA 72 bp | ACCAAAGTCCTTCTGAATGTGCCAGTGAGATCCAATTaGGGGCTGATGATGGGATCTGGTAGAAGAGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: TKVLLNVPVRSN*GLMMGSGRRVL Trigger: AAGCACTCTTCTACCAGATCCCATCATCAGCCCCAAATTGGATCTCACTGGCACATTCAGAAGGACTTTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS-3UTR CCA 90 bp | CAGTATGGCTGGGATAACCAAAGTCCTTCTGAATGTGCCAGTGAGATCCAATTTCATCAAACATTGAGATaGTGGCCAGGGCTTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: QYGWDNQSPSECASEIQFHQTLR*WPGLPE Trigger: TTCTGGAAGCCCTGGCCACCATCTCAATGTTTGATG...AAATTGGATCTCACTGGCACATTCAGAAGGACTTTGGTTATCCCAGCCATACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| 3UTR CAA 72 bp | AAGGTAAACATAACACCCAAGAGACGCGAATATGGCTaGAATATGGCTTCCTTTTGTTTTTGTGTTTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KVNITPKRREYG*NMASFCFCVCF Trigger: AAAACAAACACAAAAACAAAAGGAAGCCATATTCAAGCCATATTCGCGTCTCTTGGGTGTTATGTTTACCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS TCA 90 bp | AGGCTGCATCAAACTCACAAACGAAGAGCAAGTCAGGGAAGGTGGTaGAGACCGAGAAGCCACTGGGCAGGGTGCTGCCACCCGAAGCCG | + |
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Preference number: 5 (lower is better) Translates to: RLHQTHKRRASQGRW*RPRSHWAGCCHPKP Trigger: CGGCTTCGGGTGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCACCACCTTCCCTGACTTGCTCTTCGTTTGTGAGTTTGATGCAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028853.7 |
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| CDS TCA 90 bp | CTCCAAAGACAAACTCACAAACGAAGAGCAAGTCAGGGAAGGTGGTaGAGACCGAGAAGCCACTGGGCAGGGTGCTGCCACCCGAAGCCG | + |
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Preference number: 5 (lower is better) Translates to: LQRQTHKRRASQGRW*RPRSHWAGCCHPKP Trigger: CGGCTTCGGGTGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCACCACCTTCCCTGACTTGCTCTTCGTTTGTGAGTTTGTCTTTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS TCA 90 bp | CATCAAACATTGAGATGGTGGCCAGGGCTTCCAGAACTGAGGCACTaGGGTAAAATAGGGCAGCCACACAGTGGTAGGCTGCATCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: HQTLRWWPGLPELRH*GKIGQPHSGRLHPV Trigger: CACTGGATGCAGCCTACCACTGTGTGGCTGCCCTATTTTACCTCAGTGCCTCAGTTCTGGAAGCCCTGGCCACCATCTCAATGTTTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS TCA 90 bp | CATCAAACATTGAGATGGTGGCCAGGGCTTCCAGAACTGAGGCACTaGGGTAAAATAGGGCAGCCACACAGTGGTAGGCTGCATCAAACT | + |
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Preference number: 5 (lower is better) Translates to: HQTLRWWPGLPELRH*GKIGQPHSGRLHQT Trigger: AGTTTGATGCAGCCTACCACTGTGTGGCTGCCCTATTTTACCTCAGTGCCTCAGTTCTGGAAGCCCTGGCCACCATCTCAATGTTTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028853.7 |
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| CDS CCA 90 bp | CACCGCCATGAGTACCAATTATGTACAAGATCATCAGGGAAGTGGTaGCCACAAAGCAGAACACAGACACAAACATCACCCAGCCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: HRHEYQLCTRSSGKW*PQSRTQTQTSPSPG Trigger: CCCAGGGCTGGGTGATGTTTGTGTCTGTGTTCTGCTTTGTGGCCACCACTTCCCTGATGATCTTGTACATAATTGGTACTCATGGCGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS TCA 72 bp | CAAACTCACAAACGAAGAGCAAGTCAGGGAAGGTGGTaGAGACCGAGAAGCCACTGGGCAGGGTGCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: QTHKRRASQGRW*RPRSHWAGCCH Trigger: GTGGCAGCACCCTGCCCAGTGGCTTCTCGGTCTTCACCACCTTCCCTGACTTGCTCTTCGTTTGTGAGTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028853.7 ENSMUST00000028854.15 |
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| CDS TCA 72 bp | TTGAGATGGTGGCCAGGGCTTCCAGAACTGAGGCACTaGGGTAAAATAGGGCAGCCACACAGTGGTAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LRWWPGLPELRH*GKIGQPHSGRL Trigger: CAGCCTACCACTGTGTGGCTGCCCTATTTTACCTCAGTGCCTCAGTTCTGGAAGCCCTGGCCACCATCTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028853.7 ENSMUST00000028854.15 |
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| CDS TCA 72 bp | TTAAGGAAAACACAGCATGGACCACGTAGATCAGAGTaGCCACGTAGGCAAACACCACTGCGGCGATGTTTT | + |
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Preference number: 6 (lower is better) Translates to: LRKTQHGPRRSE*PRRQTPLRRCF Trigger: AAAACATCGCCGCAGTGGTGTTTGCCTACGTGGTCACTCTGATCTACGTGGTCCATGCTGTGTTTTCCTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028853.7 ENSMUST00000028854.15 |
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| CDS TCA 72 bp | GCTGCATCCAGTGTGATCCAGGAAGTCTCACCGCCATaGGTACCAATTATGTACAAGATCATCAGGGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: AASSVIQEVSPP*VPIMYKIIREV Trigger: CACTTCCCTGATGATCTTGTACATAATTGGTACTCATGGCGGTGAGACTTCCTGGATCACACTGGATGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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| CDS GCA 72 bp | CACGTAGATCAGAGTGACCACGTAGGCAAACACCACTaGGGCGATGTTTTCATGGTAATGCTTGTAAGTAAA | + |
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Preference number: 6 (lower is better) Translates to: HVDQSDHVGKHH*GDVFMVMLVSK Trigger: TTTACTTACAAGCATTACCATGAAAACATCGCCGCAGTGGTGTTTGCCTACGTGGTCACTCTGATCTACGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028853.7 ENSMUST00000028854.15 |
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| CDS CCA 72 bp | GAGTACCAATTATGTACAAGATCATCAGGGAAGTGGTaGCCACAAAGCAGAACACAGACACAAACATCACCC | + |
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Preference number: 6 (lower is better) Translates to: EYQLCTRSSGKW*PQSRTQTQTSP Trigger: GGGTGATGTTTGTGTCTGTGTTCTGCTTTGTGGCCACCACTTCCCTGATGATCTTGTACATAATTGGTACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028854.15 |
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