Pregenerated sensors for MAK16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031578Ensembl transcript IDs: ENSMUST00000033983.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTTACAAGCATGGGACAGTTCTCAGTTAACACCTGTTCTGATGGAGGCACCCTCAAATCAATGCCCGTTTaGTCTCATGTTTCAGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: LTSMGQFSVNTCSDGGTLKSMPV*SHVSGS Trigger: AGACCCTGAAACATGAGAGCAAACGGGCATTGATTT...GAGGGTGCCTCCATCAGAACAGGTGTTAACTGAGAACTGTCCCATGCTTGTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CAA 90 bp | ACAGCCAGTGCCATTCCAGCTCCAGGAATTCATCTGTTAGATTCCTaGGGCTCAAGCTGTTACAGCATGTGTTATAAAAATACGCCTCTC | + |
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Preference number: 2 (lower is better) Translates to: TASAIPAPGIHLLDS*GSSCYSMCYKNTPL Trigger: GAGAGGCGTATTTTTATAACACATGCTGTAACAGCTTGAGCCCAAGGAATCTAACAGATGAATTCCTGGAGCTGGAATGGCACTGGCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR-3UTR TCA 90 bp | CCACAATTAGAAGTCTCCAGTTTAAAGGAACATGAAAAGAAATCCATACCCCAAAAGACAGCACAGTGGTaGGCTGCATCAGGAAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: PQLEVSSLKEHEKKSIPQKTAQW*AASGRC Trigger: GCACCTTCCTGATGCAGCTCACCACTGTGCTGTCTT...TTGGGGTATGGATTTCTTTTCATGTTCCTTTAAACTGGAGACTTCTAATTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR-3UTR GCA 90 bp | CTTACAAGCATGGGACAGTTCTCAGTTAACACCTGTTCTGATGGAGGCACCCTCTTTTACAGAAATCAATaGCCGTTTGCTCTCATGTTT | + |
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Preference number: 2 (lower is better) Translates to: LTSMGQFSVNTCSDGGTLFYRNQ*PFALMF Trigger: AAACATGAGAGCAAACGGGCATTGATTTCTGTAAAA...GAGGGTGCCTCCATCAGAACAGGTGTTAACTGAGAACTGTCCCATGCTTGTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CCA 72 bp | GGAGGTTCTTCCGAGCCAGCCCACTACTTACAAGCATaGGACAGTTCTCAGTTAACACCTGTTCTGATGGAG | + |
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Preference number: 3 (lower is better) Translates to: GGSSEPAHYLQA*DSSQLTPVLME Trigger: CTCCATCAGAACAGGTGTTAACTGAGAACTGTCCCATGCTTGTAAGTAGTGGGCTGGCTCGGAAGAACCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CCA 72 bp | AGAGCTAGAGCATGGCTTGCTGTTTTTCAGTTTATTTaGCCATCGCACGGCAGCCCTTGTGTTGGTCTGTTT | + |
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Preference number: 3 (lower is better) Translates to: RARAWLAVFQFI*PSHGSPCVGLF Trigger: AAACAGACCAACACAAGGGCTGCCGTGCGATGGCCAAATAAACTGAAAAACAGCAAGCCATGCTCTAGCTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR-3UTR CAA 90 bp | CTTGTGTTGGTCTGTTTTCCAGCCAAAGGTCCACCTGGAGTTGTTTTGGCTAGACATCTGTTAGATTCCTaGGGCTCAAGCTGTTACAGC | + |
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Preference number: 3 (lower is better) Translates to: LVLVCFPAKGPPGVVLARHLLDS*GSSCYS Trigger: GCTGTAACAGCTTGAGCCCAAGGAATCTAACAGATG...TCTAGCCAAAACAACTCCAGGTGGACCTTTGGCTGGAAAACAGACCAACACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CCA 72 bp | ATCAATGCCCGTTTGCTCTCATGTTTCAGGGTCTTCTaGCTAAAATTGCAGTATCCTGTGAAGACAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: INARLLSCFRVF*LKLQYPVKTAQ Trigger: CTGTGCTGTCTTCACAGGATACTGCAATTTTAGCCAGAAGACCCTGAAACATGAGAGCAAACGGGCATTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR-3UTR CAA 90 bp | TTACCACAATTAGAAGTCTCCAGTTTAAAGGAACATGAAAAGAAATCCATACCCACGGCAGCCCTTGTGTaGGTCTGTTTTCCAGCCAAA | + |
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Preference number: 3 (lower is better) Translates to: LPQLEVSSLKEHEKKSIPTAALV*VCFPAK Trigger: TTTGGCTGGAAAACAGACCAACACAAGGGCTGCCGT...GGGTATGGATTTCTTTTCATGTTCCTTTAAACTGGAGACTTCTAATTGTGGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR-3UTR CAA 90 bp | CCACAATTAGAAGTCTCCAGTTTAAAGGAACATGAAAAGAAATCCATACCCCAAGAAATCAATGCCCGTTaGCTCTCATGTTTCAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: PQLEVSSLKEHEKKSIPQEINAR*LSCFRV Trigger: GACCCTGAAACATGAGAGCAAACGGGCATTGATTTC...TTGGGGTATGGATTTCTTTTCATGTTCCTTTAAACTGGAGACTTCTAATTGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CAA 72 bp | TTCAGTTTATTTGGCCATCGCACGGCAGCCCTTGTGTaGGTCTGTTTTCCAGCCAAAGGTCCACCTGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: FSLFGHRTAALV*VCFPAKGPPGV Trigger: AACTCCAGGTGGACCTTTGGCTGGAAAACAGACCAACACAAGGGCTGCCGTGCGATGGCCAAATAAACTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR TCA 90 bp | TGCAGCAGGGCTCTGCAGATTCTCCTGGCGATGACACTGAAGGTGACTAACCAGTTTCTGCAGAAGCCCTaGGTCTTGGTTCTTATTTTG | + |
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Preference number: 4 (lower is better) Translates to: CSRALQILLAMTLKVTNQFLQKP*VLVLIL Trigger: CAAAATAAGAACCAAGACTCAGGGCTTCTGCAGAAA...CTGGTTAGTCACCTTCAGTGTCATCGCCAGGAGAATCTGCAGAGCCCTGCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CAA 72 bp | TGTTTTTCAGTTTATTTGGCCATCGCACGGCAGCCCTaGTGTTGGTCTGTTTTCCAGCCAAAGGTCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: CFSVYLAIARQP*CWSVFQPKVHL Trigger: CAGGTGGACCTTTGGCTGGAAAACAGACCAACACAAGGGCTGCCGTGCGATGGCCAAATAAACTGAAAAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR GCA 90 bp | CTTGTGTTGGTCTGTTTTCCAGCCAAAGGTCCACCTGGAGTTGTTTTGGCTAGAAGCATACTGACTATTTaGCAGAGGACAGGACGACCG | + |
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Preference number: 4 (lower is better) Translates to: LVLVCFPAKGPPGVVLARSILTI*QRTGRP Trigger: CGGTCGTCCTGTCCTCTGGCAAATAGTCAGTATGCT...TCTAGCCAAAACAACTCCAGGTGGACCTTTGGCTGGAAAACAGACCAACACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR GCA 90 bp | GGAGTTGTTTTGGCTAGAATGAAGGAGGTTCTTCCGAGCCAGCCCACTACTTACACGCCTGGGAAAAGCTaGTCGCTCTATAACCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GVVLARMKEVLPSQPTTYTPGKS*SLYNLH Trigger: ATGAAGGTTATAGAGCGAGCAGCTTTTCCCAGGCGT...GTAAGTAGTGGGCTGGCTCGGAAGAACCTCCTTCATTCTAGCCAAAACAACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR GCA 90 bp | CTTGTGTTGGTCTGTTTTCCAGCCAAAGGTCCACCTGGAGTTGTTTTGGCTAGAAGGTCCTTTCAAGGGTaGTTTGCCTTTGTGCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: LVLVCFPAKGPPGVVLARRSFQG*FAFVLS Trigger: GCTAAGCACAAAGGCAAAGCACCCTTGAAAGGACCT...TCTAGCCAAAACAACTCCAGGTGGACCTTTGGCTGGAAAACAGACCAACACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR TCA 90 bp | GGAGTTGTTTTGGCTAGAATGAAGGAGGTTCTTCCGAGCCAGCCCACTACTTACTTAATGGTAGCATACTaGCTATTTGCCAGAGGACAG | + |
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Preference number: 4 (lower is better) Translates to: GVVLARMKEVLPSQPTTYLMVAY*LFARGQ Trigger: CTGTCCTCTGGCAAATAGTCAGTATGCTACCATTAA...GTAAGTAGTGGGCTGGCTCGGAAGAACCTCCTTCATTCTAGCCAAAACAACTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CCA 90 bp | CTTGTGTTGGTCTGTTTTCCAGCCAAAGGTCCACCTGGAGTTGTTTTGGCTAGAGAGCCTCTTCATCATTaGAGGATTCATCATCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LVLVCFPAKGPPGVVLAREPLHH*RIHHPG Trigger: ACCAGGATGATGAATCCTCCAATGATGAAGAGGCTC...TCTAGCCAAAACAACTCCAGGTGGACCTTTGGCTGGAAAACAGACCAACACAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CCA 90 bp | AGGCTGTGGGGAAACAGGTTTTACAGAAATCAATGCCCGTTTGCTCTCATGTTTATTCGAATCAGGTACTaGGTTATCTTGGTAAACCTC | + |
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Preference number: 4 (lower is better) Translates to: RLWGNRFYRNQCPFALMFIRIRY*VILVNL Trigger: GAGGTTTACCAAGATAACCCAGTACCTGATTCGAAT...AAACATGAGAGCAAACGGGCATTGATTTCTGTAAAACCTGTTTCCCCACAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CCA 90 bp | GCTGTGGGGAAACAGGTTTTACAGAAATCAATGCCCGTTTGCTCTCATGTTTCAATAGCATTGTCCAGCTaGGCAGCTATTAATGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: AVGKQVLQKSMPVCSHVSIALSS*AAINAF Trigger: AAAAGCATTAATAGCTGCCCAGCTGGACAATGCTAT...TGAAACATGAGAGCAAACGGGCATTGATTTCTGTAAAACCTGTTTCCCCACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| 3UTR CAA 72 bp | GCCATTCCAGCTCCAGGAATTCATCTGTTAGATTCCTaGGGCTCAAGCTGTTACAGCATGTGTTATAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: AIPAPGIHLLDS*GSSCYSMCYKN Trigger: ATTTTTATAACACATGCTGTAACAGCTTGAGCCCAAGGAATCTAACAGATGAATTCCTGGAGCTGGAATGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CCA 90 bp | TTACCACAATTAGAAGTCTCCAGTTTAAAGGAACATGAAAAGAAATCCATACCCTGTCGAAGGCATGGATaGGGAAGTTGTAGATGTCGC | + |
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Preference number: 4 (lower is better) Translates to: LPQLEVSSLKEHEKKSIPCRRHG*GSCRCR Trigger: GCGACATCTACAACTTCCCCATCCATGCCTTCGACA...GGGTATGGATTTCTTTTCATGTTCCTTTAAACTGGAGACTTCTAATTGTGGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR TCA 90 bp | TTACCACAATTAGAAGTCTCCAGTTTAAAGGAACATGAAAAGAAATCCATACCCTTGTGCTTAGCCTTATaGGCCTCTTCATCATTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LPQLEVSSLKEHEKKSIPLCLAL*ASSSLE Trigger: CTCCAATGATGAAGAGGCTCATAAGGCTAAGCACAA...GGGTATGGATTTCTTTTCATGTTCCTTTAAACTGGAGACTTCTAATTGTGGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CCA 90 bp | ATTCATCTGTTAGATTCCTTGGGCTCAAGCTGTTACAGCATGTGTTATAAAAATGAGGATTCATCATCCTaGTCTTCCTCACTGTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: IHLLDSLGSSCYSMCYKNEDSSS*SSSLSV Trigger: TACTGACAGTGAGGAAGACCAGGATGATGAATCCTC...ATTTTTATAACACATGCTGTAACAGCTTGAGCCCAAGGAATCTAACAGATGAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | TGCAGCAGGGCTCTGCAGATTCTCCTGGCGATGACACTGAAGGTGACTAACCAGTGTTTCTCTAGGGCCTaGTCGAAGGCATGGATGGGG | + |
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Preference number: 5 (lower is better) Translates to: CSRALQILLAMTLKVTNQCFSRA*SKAWMG Trigger: CCCCATCCATGCCTTCGACAAGGCCCTAGAGAAACA...CTGGTTAGTCACCTTCAGTGTCATCGCCAGGAGAATCTGCAGAGCCCTGCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | TTTCAGGGTCTTCTGGCTAAAATTGCAGTATCCTGTGAAGACAGCACAGTGGTGCATGTGGCTTTGACTTaGGCCATGGGCTCTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: FQGLLAKIAVSCEDSTVVHVALT*AMGSVS Trigger: GGAGACAGAGCCCATGGCCAAAGTCAAAGCCACATG...CACCACTGTGCTGTCTTCACAGGATACTGCAATTTTAGCCAGAAGACCCTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | CTTACAAGCATGGGACAGTTCTCAGTTAACACCTGTTCTGATGGAGGCACCCTCGTCGCCATACGTATCTaGTTTCAGTCTCTCCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: LTSMGQFSVNTCSDGGTLVAIRI*FQSLQQ Trigger: TTGCTGGAGAGACTGAAACAAGATACGTATGGCGAC...GAGGGTGCCTCCATCAGAACAGGTGTTAACTGAGAACTGTCCCATGCTTGTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | CTTACAAGCATGGGACAGTTCTCAGTTAACACCTGTTCTGATGGAGGCACCCTCAGGTACTGGGTTATCTaGGTAAACCTCTGCTTACAT | + |
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Preference number: 5 (lower is better) Translates to: LTSMGQFSVNTCSDGGTLRYWVI*VNLCLH Trigger: ATGTAAGCAGAGGTTTACCAAGATAACCCAGTACCT...GAGGGTGCCTCCATCAGAACAGGTGTTAACTGAGAACTGTCCCATGCTTGTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | AGGCTGTGGGGAAACAGGTTTTACAGAAATCAATGCCCGTTTGCTCTCATGTTTAACCTCTGCTTACATTaGTGTCTGATAAAGCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: RLWGNRFYRNQCPFALMFNLCLH*CLIKRG Trigger: GCCCCGCTTTATCAGACACAAATGTAAGCAGAGGTT...AAACATGAGAGCAAACGGGCATTGATTTCTGTAAAACCTGTTTCCCCACAGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | TGGGGAAACAGGTTTTACAGAAATCAATGCCCGTTTGCTCTCATGTTTCAGGGTCCTTTCAAGGGTGCTTaGCCTTTGTGCTTAGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: WGNRFYRNQCPFALMFQGPFKGA*PLCLAL Trigger: TAAGGCTAAGCACAAAGGCAAAGCACCCTTGAAAGG...ACCCTGAAACATGAGAGCAAACGGGCATTGATTTCTGTAAAACCTGTTTCCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | CTTACAAGCATGGGACAGTTCTCAGTTAACACCTGTTCTGATGGAGGCACCCTCAAAGAACAAAACTGCTaGTTTCCTAGTGTATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: LTSMGQFSVNTCSDGGTLKEQNC*FPSVFQ Trigger: CTGGAATACACTAGGAAACAAGCAGTTTTGTTCTTT...GAGGGTGCCTCCATCAGAACAGGTGTTAACTGAGAACTGTCCCATGCTTGTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CCA 90 bp | TTCCTCTGTCGCTTCAGTGTAAGTTTTCTGATTCGAATCAGGTACTaGGTTATCTTGGTAAACCTCTGCTTACATTTGTGTCTGATAAAG | + |
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Preference number: 5 (lower is better) Translates to: FLCRFSVSFLIRIRY*VILVNLCLHLCLIK Trigger: CTTTATCAGACACAAATGTAAGCAGAGGTTTACCAAGATAACCCAGTACCTGATTCGAATCAGAAAACTTACACTGAAGCGACAGAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS-3UTR CAA 90 bp | TTACCACAATTAGAAGTCTCCAGTTTAAAGGAACATGAAAAGAAATCCATACCCTCCTTCTCAATAGCATaGTCCAGCTGGGCAGCTATT | + |
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Preference number: 5 (lower is better) Translates to: LPQLEVSSLKEHEKKSIPSFSIA*SSWAAI Trigger: AATAGCTGCCCAGCTGGACAATGCTATTGAGAAGGA...GGGTATGGATTTCTTTTCATGTTCCTTTAAACTGGAGACTTCTAATTGTGGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CCA 72 bp | CTTCCTGTTTCTCTAGGGCCTTGTCGAAGGCATGGATaGGGAAGTTGTAGATGTCGCCATACGTATCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: LPVSLGPCRRHG*GSCRCRHTYLV Trigger: AACAAGATACGTATGGCGACATCTACAACTTCCCCATCCATGCCTTCGACAAGGCCCTAGAGAAACAGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS GCA 72 bp | CATACTGACTATTTGCCAGAGGACAGGACGACCGATTaGACAGACCAGTCAGACTGTATTCATTTCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: HTDYLPEDRTTD*TDQSDCIHFCR Trigger: TCTGCAGAAATGAATACAGTCTGACTGGTCTGTGCAATCGGTCGTCCTGTCCTCTGGCAAATAGTCAGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS GCA 72 bp | CCCTTTCTCTTCTTTAATGGTAGCATACTGACTATTTaGCAGAGGACAGGACGACCGATTGCACAGACCAGT | + |
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Preference number: 6 (lower is better) Translates to: PFLFFNGSILTI*QRTGRPIAQTS Trigger: ACTGGTCTGTGCAATCGGTCGTCCTGTCCTCTGGCAAATAGTCAGTATGCTACCATTAAAGAAGAGAAAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CAA 90 bp | CGCTTCAGTGTAAGTTTTCTGATTCGAATCAGGTACTGGGTTATCTaGGTAAACCTCTGCTTACATTTGTGTCTGATAAAGCGGGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: RFSVSFLIRIRYWVI*VNLCLHLCLIKRGQ Trigger: TTGGCCCCGCTTTATCAGACACAAATGTAAGCAGAGGTTTACCAAGATAACCCAGTACCTGATTCGAATCAGAAAACTTACACTGAAGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CCA 72 bp | CTCTCCAGCAATTCCTTCTCAATAGCATTGTCCAGCTaGGCAGCTATTAATGCTTTTTCCTCTCTTCGTTTT | + |
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Preference number: 6 (lower is better) Translates to: LSSNSFSIALSS*AAINAFSSLRF Trigger: AAAACGAAGAGAGGAAAAAGCATTAATAGCTGCCCAGCTGGACAATGCTATTGAGAAGGAATTGCTGGAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CAA 72 bp | TGTTTCAGTCTCTCCAGCAATTCCTTCTCAATAGCATaGTCCAGCTGGGCAGCTATTAATGCTTTTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: CFSLSSNSFSIA*SSWAAINAFSS Trigger: AGAGGAAAAAGCATTAATAGCTGCCCAGCTGGACAATGCTATTGAGAAGGAATTGCTGGAGAGACTGAAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CAA 90 bp | TACGTATCTTGTTTCAGTCTCTCCAGCAATTCCTTCTCAATAGCATaGTCCAGCTGGGCAGCTATTAATGCTTTTTCCTCTCTTCGTTTT | + |
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Preference number: 6 (lower is better) Translates to: YVSCFSLSSNSFSIA*SSWAAINAFSSLRF Trigger: AAAACGAAGAGAGGAAAAAGCATTAATAGCTGCCCAGCTGGACAATGCTATTGAGAAGGAATTGCTGGAGAGACTGAAACAAGATACGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CCA 72 bp | CGCTTCAGTGTAAGTTTTCTGATTCGAATCAGGTACTaGGTTATCTTGGTAAACCTCTGCTTACATTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: RFSVSFLIRIRY*VILVNLCLHLC Trigger: ACACAAATGTAAGCAGAGGTTTACCAAGATAACCCAGTACCTGATTCGAATCAGAAAACTTACACTGAAGCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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| CDS CAA 72 bp | GTAAGTTTTCTGATTCGAATCAGGTACTGGGTTATCTaGGTAAACCTCTGCTTACATTTGTGTCTGATAAAG | + |
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Preference number: 6 (lower is better) Translates to: VSFLIRIRYWVI*VNLCLHLCLIK Trigger: CTTTATCAGACACAAATGTAAGCAGAGGTTTACCAAGATAACCCAGTACCTGATTCGAATCAGAAAACTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033983.6 |
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