Pregenerated sensors for MAGOHB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030188

Ensembl transcript IDs: ENSMUST00000172883.8, ENSMUST00000173198.8, ENSMUST00000173332.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	TTTCAAGTTCCTGCCGCCCAACCCTGTCAGGGGGTGGCCACAGAGCGTCGTCCTGACGTAAGTAGATGCTaGACCTTGGGTGCTTTCCTC	+
Preference number: 2 (lower is better) Translates to: FQVPAAQPCQGVATERRPDVSRC*TLGAFL Trigger: GAGGAAAGCACCCAAGGTTCAGCATCTACTTACGTC...AGGACGACGCTCTGTGGCCACCCCCTGACAGGGTTGGGCGGCAGGAACTTGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173198.8
3UTR-3UTR CCA 90 bp	GCCTGTCTGTCTTCCCACAGTTCAGCAAGATATAATAAAAGCCAGTTCCAAGTCGTAGATGCTGAACCTTaGGTGCTTTCCTCCTGGATT	+
Preference number: 2 (lower is better) Translates to: ACLSSHSSARYNKSQFQVVDAEP*VLSSWI Trigger: AATCCAGGAGGAAAGCACCCAAGGTTCAGCATCTAC...GACTTGGAACTGGCTTTTATTATATCTTGCTGAACTGTGGGAAGACAGACAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173332.2
3UTR-3UTR GCA 90 bp	GCCTGTCTGTCTTCCCACAGTTCAGCAAGATATAATAAAAGCCAGTTCCAAGTCATGCTGAACCTTGGGTaGTTTCCTCCTGGATTTCTT	+
Preference number: 2 (lower is better) Translates to: ACLSSHSSARYNKSQFQVMLNLG*FPPGFL Trigger: AAGAAATCCAGGAGGAAAGCACCCAAGGTTCAGCAT...GACTTGGAACTGGCTTTTATTATATCTTGCTGAACTGTGGGAAGACAGACAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173332.2
3UTR-3UTR TCA 90 bp	CACAGTTCAGCAAGATATAATAAAAGCCAGTTCCAAGTCCTCTTTTCTGATCATGACGTAAGTAGATGCTaGACCTTGGGTGCTTTCCTC	+
Preference number: 2 (lower is better) Translates to: HSSARYNKSQFQVLFSDHDVSRC*TLGAFL Trigger: GAGGAAAGCACCCAAGGTTCAGCATCTACTTACGTC...ATGATCAGAAAAGAGGACTTGGAACTGGCTTTTATTATATCTTGCTGAACTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173332.2
3UTR-3UTR CCA 90 bp	GTTCAGCAAGATATAATAAAAGCCAGTTCCAAGTCCTCTTTTCTGATCATCACGTGGGTGCTTTCCTCCTaGATTTCTTACAGCCACTGT	+
Preference number: 2 (lower is better) Translates to: VQQDIIKASSKSSFLIITWVLSS*ISYSHC Trigger: ACAGTGGCTGTAAGAAATCCAGGAGGAAAGCACCCA...CGTGATGATCAGAAAAGAGGACTTGGAACTGGCTTTTATTATATCTTGCTGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173332.2
3UTR-3UTR CCA 90 bp	TTTCTTAGTGTGTTGCTTCTTGAGAACAATACATTGGAGATGGTGTTGTTGAAGGTAGATGCTGAACCTTaGGTGCTTTCCTCCTGGATT	+
Preference number: 2 (lower is better) Translates to: FLSVLLLENNTLEMVLLKVDAEP*VLSSWI Trigger: AATCCAGGAGGAAAGCACCCAAGGTTCAGCATCTAC...CTTCAACAACACCATCTCCAATGTATTGTTCTCAAGAAGCAACACACTAAGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173198.8 ENSMUST00000173332.2
3UTR-3UTR CAA 90 bp	CAAGTTCCTGCCGCCCAACCCTGTCAGGGGGTGGCCACAGAGCGTCGTCCTCTTCAAATTGGCTTAATCTaGAAGTGTAGACCAATGAGG	+
Preference number: 3 (lower is better) Translates to: QVPAAQPCQGVATERRPLQIGLI*KCRPMR Trigger: CCTCATTGGTCTACACTTCAAGATTAAGCCAATTTG...AAGAGGACGACGCTCTGTGGCCACCCCCTGACAGGGTTGGGCGGCAGGAACTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172883.8
3UTR-3UTR CAA 90 bp	CAAGTTCCTGCCGCCCAACCCTGTCAGGGGGTGGCCACAGAGCGTCGTCCTCTTATATCTAAGCTTCCCTaGTTTTTCTTAGTGTGTTGC	+
Preference number: 3 (lower is better) Translates to: QVPAAQPCQGVATERRPLISKLP*FFLVCC Trigger: GCAACACACTAAGAAAAACAAGGGAAGCTTAGATAT...AAGAGGACGACGCTCTGTGGCCACCCCCTGACAGGGTTGGGCGGCAGGAACTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000173198.8
3UTR-3UTR CAA 90 bp	TTACGATTTCAAGTTCCTGCCGCCCAACCCTGTCAGGGGGTGGCCACAGAGCGTTTCTTACAGCCACTGTaGCAGGGCTTTTCAATAGTT	+
Preference number: 3 (lower is better) Translates to: LRFQVPAAQPCQGVATERFLQPL*QGFSIV Trigger: AACTATTGAAAAGCCCTGCAACAGTGGCTGTAAGAA...ACGCTCTGTGGCCACCCCCTGACAGGGTTGGGCGGCAGGAACTTGAAATCGTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173198.8
3UTR-3UTR CAA 90 bp	CGATTTCAAGTTCCTGCCGCCCAACCCTGTCAGGGGGTGGCCACAGAGCGTCGTTTAGTGTGTTGCTTCTaGAGAACAATACATTGGAGA	+
Preference number: 3 (lower is better) Translates to: RFQVPAAQPCQGVATERRLVCCF*RTIHWR Trigger: TCTCCAATGTATTGTTCTCAAGAAGCAACACACTAA...ACGACGCTCTGTGGCCACCCCCTGACAGGGTTGGGCGGCAGGAACTTGAAATCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173198.8
3UTR-3UTR CAA 90 bp	GTTCAGCAAGATATAATAAAAGCCAGTTCCAAGTCCTCTTTTCTGATCATCACGTTCTTACAGCCACTGTaGCAGGGCTTTTCAATAGTT	+
Preference number: 3 (lower is better) Translates to: VQQDIIKASSKSSFLIITFLQPL*QGFSIV Trigger: AACTATTGAAAAGCCCTGCAACAGTGGCTGTAAGAA...CGTGATGATCAGAAAAGAGGACTTGGAACTGGCTTTTATTATATCTTGCTGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173332.2
3UTR-3UTR CAA 90 bp	CACAGTTCAGCAAGATATAATAAAAGCCAGTTCCAAGTCCTCTTTTCTGATCATTTAGTGTGTTGCTTCTaGAGAACAATACATTGGAGA	+
Preference number: 3 (lower is better) Translates to: HSSARYNKSQFQVLFSDHLVCCF*RTIHWR Trigger: TCTCCAATGTATTGTTCTCAAGAAGCAACACACTAA...ATGATCAGAAAAGAGGACTTGGAACTGGCTTTTATTATATCTTGCTGAACTGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173332.2