Pregenerated sensors for MAGIX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031147Ensembl transcript IDs: ENSMUST00000115695.4
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGAAGGGACTAGGAGAAGCTGCGCGCACGCGGACGTGGGGGTGGTaGGGTGCGAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCG | + |
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Preference number: 1 (lower is better) Translates to: GKGLGEAARTRTWGW*GASALGSGRAIPLA Trigger: CGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTCGCACCCCACCACCCCCACGTCCGCGTGCGCGCAGCTTCTCCTAGTCCCTTCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 90 bp | GTCGGGAAGGGACTAGGAGAAGCTGCGCGCACGCGGACGTGGGGGTaGTGGGGTGCGAGCGCTCTGGGCTCTGGGAGGGCCATACCACTG | + |
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Preference number: 1 (lower is better) Translates to: VGKGLGEAARTRTWG*WGASALGSGRAIPL Trigger: CAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTCGCACCCCACCACCCCCACGTCCGCGTGCGCGCAGCTTCTCCTAGTCCCTTCCCGAC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR TCA 90 bp | GGTGCGAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTaGAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: GASALGSGRAIPLAS*RGGDHSTVQCAVGR Trigger: CCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTCGCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 90 bp | AAGGTACTAAACCAGGTTAAAGCTCTAAGGGAAAAGCTTAGAGCCTaGCGGTCCTGCATGCTAGAACCTTATGGGACCTCACCTAGTGAG | + |
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Preference number: 1 (lower is better) Translates to: KVLNQVKALREKLRA*RSCMLEPYGTSPSE Trigger: CTCACTAGGTGAGGTCCCATAAGGTTCTAGCATGCAGGACCGCCAGGCTCTAAGCTTTTCCCTTAGAGCTTTAACCTGGTTTAGTACCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CAA 90 bp | GGGTGCGAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTaGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GCERSGLWEGHTTGV*KGWGPLHCAMCSGK Trigger: CTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTCGCACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR-3UTR CCA 90 bp | GAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTGAAGGGGTGGGGAGAAAAGCTTAGAGCCTaGCGGTCCTGCATGCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: ERSGLWEGHTTGVLKGWGEKLRA*RSCMLE Trigger: TTCTAGCATGCAGGACCGCCAGGCTCTAAGCTTTTC...TCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 72 bp | GGACTAGGAGAAGCTGCGCGCACGCGGACGTGGGGGTaGTGGGGTGCGAGCGCTCTGGGCTCTGGGAGGGCC | + |
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Preference number: 3 (lower is better) Translates to: GLGEAARTRTWG*WGASALGSGRA Trigger: GGCCCTCCCAGAGCCCAGAGCGCTCGCACCCCACCACCCCCACGTCCGCGTGCGCGCAGCTTCTCCTAGTCC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 72 bp | CTAGGAGAAGCTGCGCGCACGCGGACGTGGGGGTGGTaGGGTGCGAGCGCTCTGGGCTCTGGGAGGGCCATA | + |
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Preference number: 3 (lower is better) Translates to: LGEAARTRTWGW*GASALGSGRAI Trigger: TATGGCCCTCCCAGAGCCCAGAGCGCTCGCACCCCACCACCCCCACGTCCGCGTGCGCGCAGCTTCTCCTAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 72 bp | GCACGCGGACGTGGGGGTGGTGGGGTGCGAGCGCTCTaGGCTCTGGGAGGGCCATACCACTGGCGTCTTGAA | + |
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Preference number: 3 (lower is better) Translates to: ARGRGGGGVRAL*ALGGPYHWRLE Trigger: TTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTCGCACCCCACCACCCCCACGTCCGCGTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 72 bp | GTGCGAGCGCTCTGGGCTCTGGGAGGGCCATACCACTaGCGTCTTGAAGGGGTGGGGACCACTCCACTGTGC | + |
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Preference number: 3 (lower is better) Translates to: VRALWALGGPYH*RLEGVGTTPLC Trigger: GCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTCGCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR TCA 72 bp | GCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTaGAGGGGTGGGGACCACTCCACTGTGCAATGTGCA | + |
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Preference number: 3 (lower is better) Translates to: ALGSGRAIPLAS*RGGDHSTVQCA Trigger: TGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 72 bp | CTCTGGGAGGGCCATACCACTGGCGTCTTGAAGGGGTaGGGACCACTCCACTGTGCAATGTGCAGTGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LWEGHTTGVLKG*GPLHCAMCSGK Trigger: CTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CCA 72 bp | AACCAGGTTAAAGCTCTAAGGGAAAAGCTTAGAGCCTaGCGGTCCTGCATGCTAGAACCTTATGGGACCTCA | + |
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Preference number: 3 (lower is better) Translates to: NQVKALREKLRA*RSCMLEPYGTS Trigger: TGAGGTCCCATAAGGTTCTAGCATGCAGGACCGCCAGGCTCTAAGCTTTTCCCTTAGAGCTTTAACCTGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR GCA 90 bp | CGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTGAAGGGGTGGGGACCACCTCCGCCTTCCGGCTaGCATCTCCAGAGCAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: RSGLWEGHTTGVLKGWGPPPPSG*HLQSKL Trigger: CAGCTTGCTCTGGAGATGGCAGCCGGAAGGCGGAGG...TGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | GGCGTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTAAGAGCCGGTCCTCGCTaGGCACCAGCCAGGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GVLKGWGPLHCAMCSGKVRAGPR*APARAQ Trigger: CTGGGCCCTGGCTGGTGCCCAGCGAGGACCGGCTCT...TACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| 3UTR CAA 72 bp | CGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTaGAAGGGGTGGGGACCACTCCACTGTGCAATGTGC | + |
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Preference number: 4 (lower is better) Translates to: RSGLWEGHTTGV*KGWGPLHCAMC Trigger: GCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | GAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTGAAGGGGTGGGGAACTGCGCGAACCACGTaGCCAATAGCCACTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: ERSGLWEGHTTGVLKGWGTARTT*PIATAS Trigger: AGAGGCAGTGGCTATTGGCCACGTGGTTCGCGCAGT...TCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR TCA 90 bp | GAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTGAAGGGGTGGGGATTCACAAGAGTAGCATaGGGCAAGCGACTGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: ERSGLWEGHTTGVLKGWGFTRVA*GKRLSV Trigger: CACAGACAGTCGCTTGCCTCATGCTACTCTTGTGAA...TCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | GAGCGCTCTGGGCTCTGGGAGGGCCATACCACTGGCGTCTTGAAGGGGTGGGGACAGAAAATCGGCCAGTaGCTTGGGGTACTTTCAAAG | + |
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Preference number: 4 (lower is better) Translates to: ERSGLWEGHTTGVLKGWGQKIGQ*LGVLSK Trigger: CTTTGAAAGTACCCCAAGCCACTGGCCGATTTTCTG...TCCCCACCCCTTCAAGACGCCAGTGGTATGGCCCTCCCAGAGCCCAGAGCGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | TGGCGTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTAGTACCAGGCAAAGGTaGGGGCCTCCAGTTCGAATC | + |
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Preference number: 4 (lower is better) Translates to: WRLEGVGTTPLCNVQWEGSTRQR*GPPVRI Trigger: GATTCGAACTGGAGGCCCCCACCTTTGCCTGGTACT...ACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | GTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAGGGCCGGTGGTGAACTaGGGAAATGGTGCTGCGAGA | + |
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Preference number: 4 (lower is better) Translates to: VLKGWGPLHCAMCSGKVLGPVVN*GNGAAR Trigger: TCTCGCAGCACCATTTCCCCAGTTCACCACCGGCCC...TAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR TCA 90 bp | GGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACCAGGTTAAAGCTGTCTTGGGCCGGTGGTaGACTGGGGAAATGGTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GPLHCAMCSGKVLNQVKAVLGRW*TGEMVL Trigger: CAGCACCATTTCCCCAGTTCACCACCGGCCCAAGAC...AGCTTTAACCTGGTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | TGGCGTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTCTTATTCTGGGTTACTaGAAGTGGCTCCGTCCATGT | + |
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Preference number: 4 (lower is better) Translates to: WRLEGVGTTPLCNVQWEGLILGY*KWLRPC Trigger: ACATGGACGGAGCCACTTCCAGTAACCCAGAATAAG...ACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | GTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAATAGCCACTGCCTCTaGACTAGGTCTGGGACTGGT | + |
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Preference number: 4 (lower is better) Translates to: VLKGWGPLHCAMCSGKVLNSHCL*TRSGTG Trigger: ACCAGTCCCAGACCTAGTCCAGAGGCAGTGGCTATT...TAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR TCA 90 bp | GTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAGAGTCTCAGACCTTTaGTGCTGGGGTCGATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: VLKGWGPLHCAMCSGKVLRVSDL*CWGRCF Trigger: GAAACATCGACCCCAGCATCAAAGGTCTGAGACTCT...TAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR GCA 90 bp | GGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACCAGGTTAAAGCTACGACCACATCGCTGTaGTGGCCCATCCTTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GPLHCAMCSGKVLNQVKATTTSL*WPILQQ Trigger: CTGCTGAAGGATGGGCCAGCACAGCGATGTGGTCGT...AGCTTTAACCTGGTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CCA 90 bp | GGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACCAGGTTAAAGCTACCACATCGCTGTGCTaGCCCATCCTTCAGCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: GPLHCAMCSGKVLNQVKATTSLC*PILQQS Trigger: GGACTGCTGAAGGATGGGCCAGCACAGCGATGTGGT...AGCTTTAACCTGGTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR GCA 90 bp | GGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACCAGGTTAAAGCTACGAGGTCACCAGCCTaGAAACGACCACATCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GPLHCAMCSGKVLNQVKATRSPA*KRPHRC Trigger: ACAGCGATGTGGTCGTTTGCAGGCTGGTGACCTCGT...AGCTTTAACCTGGTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR TCA 90 bp | TTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACAGTAAGGCCCTGTGTTaGCTGGCCATTGATATAGAG | + |
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Preference number: 4 (lower is better) Translates to: LKGWGPLHCAMCSGKVLNSKALC*LAIDIE Trigger: CTCTATATCAATGGCCAGTCAACACAGGGCCTTACT...GTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR TCA 90 bp | GGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACCAGGTTAAAGCTGCAAGCGACTGTCTGTaGCTTCTATATCTGCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: GPLHCAMCSGKVLNQVKAASDCL*LLYLQN Trigger: ATTCTGCAGATATAGAAGTCACAGACAGTCGCTTGC...AGCTTTAACCTGGTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 90 bp | GGGGTGCTCCACTGCGCGAACCACGTGGCCAATAGCCACTGCCTCTaGACTAGGTCTGGGACTGGTCCGGGTCTTGGGCCGGTGGTGAAC | + |
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Preference number: 5 (lower is better) Translates to: GVLHCANHVANSHCL*TRSGTGPGLGPVVN Trigger: GTTCACCACCGGCCCAAGACCCGGACCAGTCCCAGACCTAGTCCAGAGGCAGTGGCTATTGGCCACGTGGTTCGCGCAGTGGAGCACCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS TCA 90 bp | GCCTCTGGACTAGGTCTGGGACTGGTCCGGGTCTTGGGCCGGTGGTaGACTGGGGAAATGGTGCTGCGAGACTCCACCCTGCTTCCCCTA | + |
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Preference number: 5 (lower is better) Translates to: ASGLGLGLVRVLGRW*TGEMVLRDSTLLPL Trigger: TAGGGGAAGCAGGGTGGAGTCTCGCAGCACCATTTCCCCAGTTCACCACCGGCCCAAGACCCGGACCAGTCCCAGACCTAGTCCAGAGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 90 bp | TGGACTAGGTCTGGGACTGGTCCGGGTCTTGGGCCGGTGGTGAACTaGGGAAATGGTGCTGCGAGACTCCACCCTGCTTCCCCTAGGATC | + |
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Preference number: 5 (lower is better) Translates to: WTRSGTGPGLGPVVN*GNGAARLHPASPRI Trigger: GATCCTAGGGGAAGCAGGGTGGAGTCTCGCAGCACCATTTCCCCAGTTCACCACCGGCCCAAGACCCGGACCAGTCCCAGACCTAGTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 90 bp | ATAGAGCACGAGGTCACCAGCCTGCAAACGACCACATCGCTGTGCTaGCCCATCCTTCAGCAGTCCATGCACGGTCAATGGAGCATCCCC | + |
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Preference number: 5 (lower is better) Translates to: IEHEVTSLQTTTSLC*PILQQSMHGQWSIP Trigger: GGGGATGCTCCATTGACCGTGCATGGACTGCTGAAGGATGGGCCAGCACAGCGATGTGGTCGTTTGCAGGCTGGTGACCTCGTGCTCTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 90 bp | GATATAGAGCACGAGGTCACCAGCCTGCAAACGACCACATCGCTGTaGTGGCCCATCCTTCAGCAGTCCATGCACGGTCAATGGAGCATC | + |
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Preference number: 5 (lower is better) Translates to: DIEHEVTSLQTTTSL*WPILQQSMHGQWSI Trigger: GATGCTCCATTGACCGTGCATGGACTGCTGAAGGATGGGCCAGCACAGCGATGTGGTCGTTTGCAGGCTGGTGACCTCGTGCTCTATATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 90 bp | TGCAAACGACCACATCGCTGTGCTGGCCCATCCTTCAGCAGTCCATaGACGGTCAATGGAGCATCCCCAGATACATTTCGGCCTCCACTT | + |
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Preference number: 5 (lower is better) Translates to: CKRPHRCAGPSFSSP*TVNGASPDTFRPPL Trigger: AAGTGGAGGCCGAAATGTATCTGGGGATGCTCCATTGACCGTGCATGGACTGCTGAAGGATGGGCCAGCACAGCGATGTGGTCGTTTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CAA 90 bp | GGCGTCTTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTAACTGCCATCCATGTCTaGAGGCCTTTGAAGTACCAG | + |
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Preference number: 5 (lower is better) Translates to: GVLKGWGPLHCAMCSGKVTAIHV*RPLKYQ Trigger: CTGGTACTTCAAAGGCCTCAAGACATGGATGGCAGT...TACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAAGACGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS TCA 90 bp | AGTTCGAATCCTCTCCACCACCTGGGCATGAGTAAGGCCCTGTGTTaGCTGGCCATTGATATAGAGCACGAGGTCACCAGCCTGCAAACG | + |
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Preference number: 5 (lower is better) Translates to: SSNPLHHLGMSKALC*LAIDIEHEVTSLQT Trigger: CGTTTGCAGGCTGGTGACCTCGTGCTCTATATCAATGGCCAGTCAACACAGGGCCTTACTCATGCCCAGGTGGTGGAGAGGATTCGAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 90 bp | CACAAGAGTAGCATGAGGCAAGCGACTGTCTGTGACTTCTATATCTaGAGAATCCAGACCACTAACACCCTCCGTGTGGCGCAGGCGCAA | + |
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Preference number: 5 (lower is better) Translates to: HKSSMRQATVCDFYI*RIQTTNTLRVAQAQ Trigger: TTGCGCCTGCGCCACACGGAGGGTGTTAGTGGTCTGGATTCTGCAGATATAGAAGTCACAGACAGTCGCTTGCCTCATGCTACTCTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CAA 90 bp | TTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACTGTCCTCCAACCTCCTaGATCCTACTGCCATCCATG | + |
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Preference number: 5 (lower is better) Translates to: LKGWGPLHCAMCSGKVLNCPPTS*ILLPSM Trigger: CATGGATGGCAGTAGGATCAAGGAGGTTGGAGGACA...GTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CAA 90 bp | TTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACCATGTCTTGAGGCCTTaGAAGTACCAGGCAAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LKGWGPLHCAMCSGKVLNHVLRP*KYQAKV Trigger: CACCTTTGCCTGGTACTTCAAAGGCCTCAAGACATG...GTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS-3UTR CAA 90 bp | TTGAAGGGGTGGGGACCACTCCACTGTGCAATGTGCAGTGGGAAGGTACTAAACAAATCGGCCAGTGGCTaGGGGTACTTTCAAAGCATA | + |
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Preference number: 5 (lower is better) Translates to: LKGWGPLHCAMCSGKVLNKSASG*GYFQSI Trigger: TATGCTTTGAAAGTACCCCAAGCCACTGGCCGATTT...GTTTAGTACCTTCCCACTGCACATTGCACAGTGGAGTGGTCCCCACCCCTTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 72 bp | CCCGAACCCCTAGAGCCCGCGAGAGCCGGTCCTCGCTaGGCACCAGCCAGGGCCCAGGGGTACCAGGGATAC | + |
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Preference number: 6 (lower is better) Translates to: PEPLEPARAGPR*APARAQGYQGY Trigger: GTATCCCTGGTACCCCTGGGCCCTGGCTGGTGCCCAGCGAGGACCGGCTCTCGCGGGCTCTAGGGGTTCGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 72 bp | CCAGCCGCTCCAGGAGCTGCCGAGCTCGGGGACTCCTaGACCCTTGTAAGCCACCTCCTCTTCTGCCCCCTC | + |
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Preference number: 6 (lower is better) Translates to: PAAPGAAELGDS*TLVSHLLFCPL Trigger: GAGGGGGCAGAAGAGGAGGTGGCTTACAAGGGTCCAGGAGTCCCCGAGCTCGGCAGCTCCTGGAGCGGCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 72 bp | CACTGCGCGAACCACGTGGCCAATAGCCACTGCCTCTaGACTAGGTCTGGGACTGGTCCGGGTCTTGGGCCG | + |
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Preference number: 6 (lower is better) Translates to: HCANHVANSHCL*TRSGTGPGLGP Trigger: CGGCCCAAGACCCGGACCAGTCCCAGACCTAGTCCAGAGGCAGTGGCTATTGGCCACGTGGTTCGCGCAGTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS TCA 72 bp | CTAGGTCTGGGACTGGTCCGGGTCTTGGGCCGGTGGTaGACTGGGGAAATGGTGCTGCGAGACTCCACCCTG | + |
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Preference number: 6 (lower is better) Translates to: LGLGLVRVLGRW*TGEMVLRDSTL Trigger: CAGGGTGGAGTCTCGCAGCACCATTTCCCCAGTTCACCACCGGCCCAAGACCCGGACCAGTCCCAGACCTAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 72 bp | CACGAGGTCACCAGCCTGCAAACGACCACATCGCTGTaGTGGCCCATCCTTCAGCAGTCCATGCACGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: HEVTSLQTTTSL*WPILQQSMHGQ Trigger: TTGACCGTGCATGGACTGCTGAAGGATGGGCCAGCACAGCGATGTGGTCGTTTGCAGGCTGGTGACCTCGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 72 bp | GAGGTCACCAGCCTGCAAACGACCACATCGCTGTGCTaGCCCATCCTTCAGCAGTCCATGCACGGTCAATGG | + |
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Preference number: 6 (lower is better) Translates to: EVTSLQTTTSLC*PILQQSMHGQW Trigger: CCATTGACCGTGCATGGACTGCTGAAGGATGGGCCAGCACAGCGATGTGGTCGTTTGCAGGCTGGTGACCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 72 bp | GTACCAGGGATACGGTTTTCCAGGTCTTCTGTGGGGTaGTCCACTGCGCGAACCACGTGGCCAATAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: VPGIRFSRSSVG*STARTTWPIAT Trigger: AGTGGCTATTGGCCACGTGGTTCGCGCAGTGGAGCACCCCACAGAAGACCTGGAAAACCGTATCCCTGGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS TCA 72 bp | CCTCTCCACCACCTGGGCATGAGTAAGGCCCTGTGTTaGCTGGCCATTGATATAGAGCACGAGGTCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: PLHHLGMSKALC*LAIDIEHEVTS Trigger: GCTGGTGACCTCGTGCTCTATATCAATGGCCAGTCAACACAGGGCCTTACTCATGCCCAGGTGGTGGAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 72 bp | CCACATCGCTGTGCTGGCCCATCCTTCAGCAGTCCATaGACGGTCAATGGAGCATCCCCAGATACATTTCGG | + |
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Preference number: 6 (lower is better) Translates to: PHRCAGPSFSSP*TVNGASPDTFR Trigger: CCGAAATGTATCTGGGGATGCTCCATTGACCGTGCATGGACTGCTGAAGGATGGGCCAGCACAGCGATGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CAA 90 bp | CTTCCGATGTCCTCCAACCTCCTTGATCCTACTGCCATCCATGTCTaGAGGCCTTTGAAGTACCAGGCAAAGGTGGGGGCCTCCAGTTCG | + |
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Preference number: 6 (lower is better) Translates to: LPMSSNLLDPTAIHV*RPLKYQAKVGASSS Trigger: CGAACTGGAGGCCCCCACCTTTGCCTGGTACTTCAAAGGCCTCAAGACATGGATGGCAGTAGGATCAAGGAGGTTGGAGGACATCGGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CAA 72 bp | CTCCTTGATCCTACTGCCATCCATGTCTTGAGGCCTTaGAAGTACCAGGCAAAGGTGGGGGCCTCCAGTTCG | + |
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Preference number: 6 (lower is better) Translates to: LLDPTAIHVLRP*KYQAKVGASSS Trigger: CGAACTGGAGGCCCCCACCTTTGCCTGGTACTTCAAAGGCCTCAAGACATGGATGGCAGTAGGATCAAGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CAA 72 bp | TCCTCCAACCTCCTTGATCCTACTGCCATCCATGTCTaGAGGCCTTTGAAGTACCAGGCAAAGGTGGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SSNLLDPTAIHV*RPLKYQAKVGA Trigger: GGCCCCCACCTTTGCCTGGTACTTCAAAGGCCTCAAGACATGGATGGCAGTAGGATCAAGGAGGTTGGAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CCA 72 bp | CCGGACCTCGGGTCAGCTCCACAGAAAATCGGCCAGTaGCTTGGGGTACTTTCAAAGCATAGCTTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: PDLGSAPQKIGQ*LGVLSKHSLPY Trigger: ATAAGGCAAGCTATGCTTTGAAAGTACCCCAAGCCACTGGCCGATTTTCTGTGGAGCTGACCCGAGGTCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS GCA 72 bp | AGCATGAGGCAAGCGACTGTCTGTGACTTCTATATCTaGAGAATCCAGACCACTAACACCCTCCGTGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: SMRQATVCDFYI*RIQTTNTLRVA Trigger: CGCCACACGGAGGGTGTTAGTGGTCTGGATTCTGCAGATATAGAAGTCACAGACAGTCGCTTGCCTCATGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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| CDS CAA 72 bp | ACCTCGGGTCAGCTCCACAGAAAATCGGCCAGTGGCTaGGGGTACTTTCAAAGCATAGCTTGCCTTATTCTG | + |
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Preference number: 6 (lower is better) Translates to: TSGQLHRKSASG*GYFQSIACLIL Trigger: CAGAATAAGGCAAGCTATGCTTTGAAAGTACCCCAAGCCACTGGCCGATTTTCTGTGGAGCTGACCCGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115695.4 |
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