RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAGED2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025268

Ensembl transcript IDs: ENSMUST00000026302.13, ENSMUST00000112697.10, ENSMUST00000112699.9, ENSMUST00000112700.8, ENSMUST00000129768.8, ENSMUST00000131241.2, ENSMUST00000143843.8, ENSMUST00000147152.3

Found 258 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATaGAGTACGTTTCTGAGAGTGCACCCTGGCTTGAGAAGAAGACGC +
Preference number: 2 (lower is better)
Translates to: VSTSVDLIVAAWSAA*STFLRVHPGLRRRR
Trigger: GCGTCTTCTTCTCAAGCCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
3UTR-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTCTGAGAGTGCACCCTaGCTTGAGAAGAAGACGCTG +
Preference number: 2 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSSESAP*LEKKTL
Trigger: CAGCGTCTTCTTCTCAAGCCAGGGTGCACTCTCAGA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
3UTR GCA 72 bp AGCAAACAAGCCACAGTAAAACCACAGCAGTGTCTTTaGACACGTTCCAGGCTTATCTCCAACCCAGCCGCC +
Preference number: 3 (lower is better)
Translates to: SKQATVKPQQCL*TRSRLISNPAA
Trigger: GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
3UTR-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTAGAGTGCACCCTGGCTaGAGAAGAAGACGCTGTGAT +
Preference number: 3 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSRVHPG*RRRRCD
Trigger: ATCACAGCGTCTTCTTCTCAAGCCAGGGTGCACTCT...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGGCCTGGGTGGCAGCTaGCTCAGACGCCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWGLGGS*LRRLWG
Trigger: GCCCCAGAGGCGTCTGAGGCAGCTGCCACCCAGGCC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCACAGGCACCAGAGCTaGTGTTGGTACTGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: AVSLHTFQAYLQPSRPHEHRHQS*CWYWPQ
Trigger: CTGGGGCCAGTACCAACAGCAGCTCTGGTGCCTGTG...CTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGCGCCTCTGGGGCCTTTaGGACCTCTGTCGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWRLWGL*DLCRLW
Trigger: CCAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCG...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp TCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCCCCAGAGCCCAATGCCCATCTaGGCTCTAATCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: SLHTFQAYLQPSRPHEPQSPMPI*ALISAL
Trigger: GAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCT...CTGGGGCTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp ACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATCAGCTTCGTCCCAGTTaGAGGGCCCAGCGGCATTCT +
Preference number: 4 (lower is better)
Translates to: TAVSLHTFQAYLQPSRPHQLRPS*RAQRHS
Trigger: AGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTG...ATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp ACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGCCCTGAGAGCGAGCTaGATCTGCACCACTCTCGCT +
Preference number: 4 (lower is better)
Translates to: TAVSLHTFQAYLQPSRPHALRAS*ICTTLA
Trigger: AGCGAGAGTGGTGCAGATCCAGCTCGCTCTCAGGGC...ATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGGCCACATCTCTGGGTaGGGGTGCCTCAGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWGHISG*GCLRFL
Trigger: CAGGAACCTGAGGCACCCCCACCCAGAGATGTGGCC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCTCTCAGCCCTCGCCTTaGCTTCGGCAGCAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: KPQQCLCTRSRLISNPAASQPSP*LRQQPQ
Trigger: CTGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGA...GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGTCTCAGCCCTCGCCTTaGCTTCGGCAGCAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWSQPSP*LRQQPQ
Trigger: CTGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGA...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp TCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCCCCAGAGCCTTTGCAGCCTCTaGAACCTCTGGTGCCTTTTC +
Preference number: 4 (lower is better)
Translates to: SLHTFQAYLQPSRPHEPQSLCSL*NLWCLF
Trigger: GAAAAGGCACCAGAGGTTTCAGAGGCTGCAAAGGCT...CTGGGGCTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp AAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCGCCTCTGGGGCCTTTaGGACCTCTGTCGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: KTTAVSLHTFQAYLQPSRRLWGL*DLCRLW
Trigger: CCAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCG...GCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGAGCCAACCGAGTCCTTaGTGCCCTGCGGGCCCAAAA +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWSQPSP*CPAGPK
Trigger: TTTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCT...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGGCCTGGGTGGCAGCTaGCTCAGACGCCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSGLGGS*LRRLWG
Trigger: GCCCCAGAGGCGTCTGAGGCAGCTGCCACCCAGGCC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCCCCAGGGCATTGTCATAGCCTaGAGGTCAGACTTCTGCGTC +
Preference number: 4 (lower is better)
Translates to: SLHTFQAYLQPSRPHEPQGIVIA*RSDFCV
Trigger: GACGCAGAAGTCTGACCTGCAGGCTATGACAATGCC...CTGGGGCTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp TCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCCCCAGCTCTCGGTACTGAGCTaGCCATTCCTTGGGATCCTT +
Preference number: 4 (lower is better)
Translates to: SLHTFQAYLQPSRPHEPQLSVLS*PFLGIL
Trigger: AAGGATCCCAAGGAATGGGCAGCTCAGTACCGAGAG...CTGGGGCTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGCAGCTTCGTCCCAGTTaGAGGGCCCAGCGGCATTCT +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWQLRPS*RAQRHS
Trigger: AGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTG...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp TCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCCCCAGCAGACTTCTGCGTCTTaGTGTCAGCTGCTGGACTCT +
Preference number: 4 (lower is better)
Translates to: SLHTFQAYLQPSRPHEPQQTSAS*CQLLDS
Trigger: AGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTG...CTGGGGCTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp AAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCACCGGCACCAGCACTaGCATTGGCACCACCACTTC +
Preference number: 4 (lower is better)
Translates to: KPQQCLCTRSRLISNPAAHRHQH*HWHHHF
Trigger: GAAGTGGTGGTGCCAATGCCAGTGCTGGTGCCGGTG...GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGCACCAGAGCTGCTGTTaGTACTGGCCCCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWHQSCC*YWPQLH
Trigger: GTGGAGCTGGGGCCAGTACCAACAGCAGCTCTGGTG...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGGGCCTGGGTGGCAGCTaGCTCAGACGCCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLGLGGS*LRRLWG
Trigger: GCCCCAGAGGCGTCTGAGGCAGCTGCCACCCAGGCC...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCTGGATCCGGGCCTTTaGCCAGGGTCCAATATCAGC +
Preference number: 4 (lower is better)
Translates to: KPQQCLCTRSRLISNPAALDPGL*PGSNIS
Trigger: GCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAG...GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGAGAGCGAGCTGGATCTaGACCACTCTCGCTTGTGTC +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWRASWI*TTLACV
Trigger: GACACAAGCGAGAGTGGTGCAGATCCAGCTCGCTCT...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGAGACCTCCAAGTTCTaGGTCACGGTCAACAGGTCC +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWETSKF*VTVNRS
Trigger: GGACCTGTTGACCGTGACCCAGAACTTGGAGGTCTC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCTTCGACCACCTGTaGCTTCTGAAGCCTGACTCT +
Preference number: 4 (lower is better)
Translates to: KPQQCLCTRSRLISNPAAPFDHL*LLKPDS
Trigger: AGAGTCAGGCTTCAGAAGCCACAGGTGGTCGAAGGG...GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp AAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCGGGCCCAAAAGGCTATaGGTCCCCTTGAAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: KTTAVSLHTFQAYLQPSRGPKRL*VPLKLC
Trigger: GCAGAGCTTCAAGGGGACCCATAGCCTTTTGGGCCC...GCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp AGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCACTGGCACCAGCACTaGCACCAGCACTGGCACTGC +
Preference number: 4 (lower is better)
Translates to: SKTTAVSLHTFQAYLQPSHWHQH*HQHWHC
Trigger: GCAGTGCCAGTGCTGGTGCCAGTGCTGGTGCCAGTG...GCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCACTGGCACCAGCACTaGCACCAGCACTGGCACTGC +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTHWHQH*HQHWHC
Trigger: GCAGTGCCAGTGCTGGTGCCAGTGCTGGTGCCAGTG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCGCCTCTGGGGCCTTTaGGACCTCTGTCGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRLWGL*DLCRLW
Trigger: CCAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGGGTATTCTTGGCTTTaGCCTTGGGCCGAGTATCCT +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWGYSWL*PWAEYP
Trigger: AGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACAGCCAACCGAGTCCTTaGTGCCCTGCGGGCCCAAAA +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHSQPSP*CPAGPK
Trigger: TTTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCT...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCAGAGCGAGCTGGATCTaGACCACTCTCGCTTGTGTC +
Preference number: 4 (lower is better)
Translates to: KTTAVSLHTFQAYLQPSRRASWI*TTLACV
Trigger: GACACAAGCGAGAGTGGTGCAGATCCAGCTCGCTCT...GCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGCTCTCGGTACTGAGCTaGCCATTCCTTGGGATCCTT +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWLSVLS*PFLGIL
Trigger: AAGGATCCCAAGGAATGGGCAGCTCAGTACCGAGAG...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCACAGGCACCAGAGCTaGTGTTGGTACTGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTHRHQS*CWYWPQ
Trigger: CTGGGGCCAGTACCAACAGCAGCTCTGGTGCCTGTG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCACCGGCACCAGCACTaGCATTGGCACCACCACTTC +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTHRHQH*HWHHHF
Trigger: GAAGTGGTGGTGCCAATGCCAGTGCTGGTGCCGGTG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCACCGGCACCAGCACTaGCATTGGCACCACCACTTC +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHHRHQH*HWHHHF
Trigger: GAAGTGGTGGTGCCAATGCCAGTGCTGGTGCCGGTG...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp ACAAGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCAGCCAACCGAGTCCTTaGTGCCCTGCGGGCCCAAAA +
Preference number: 4 (lower is better)
Translates to: TSHSKTTAVSLHTFQAYLSQPSP*CPAGPK
Trigger: TTTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCT...GAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp AGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGAAGAGCCCAAATGTaGGACTGGCAGTCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: SKTTAVSLHTFQAYLQPSRRAQM*DWQSGW
Trigger: CCAGCCTGACTGCCAGTCTCACATTTGGGCTCTTCG...GCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGCCTTTTCTGAAGCTTTaGCCTGAGAGCGAGCTGGAT +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWPFLKL*PESELD
Trigger: ATCCAGCTCGCTCTCAGGGCAAAGCTTCAGAAAAGG...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACGAGTCCTTGATGCCCTaGGGGCCCAAAAGGCTATGG +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHESLMP*GPKRLW
Trigger: CCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTC...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCTTTAGTTTCAGCTCCTaGCTGGATCCGGGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: KTTAVSLHTFQAYLQPSRFSFSS*LDPGLC
Trigger: GCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAA...GCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp ACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATCTTGGTGTCAGCTGCTaGACTCTTGTTTTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: TAVSLHTFQAYLQPSRPHLGVSC*TLVFSC
Trigger: GCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAG...ATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGGGGCCCAAAAGGCTATaGGTCCCCTTGAAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTGPKRL*VPLKLC
Trigger: GCAGAGCTTCAAGGGGACCCATAGCCTTTTGGGCCC...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACGGGCCCAAAAGGCTATaGGTCCCCTTGAAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHGPKRL*VPLKLC
Trigger: GCAGAGCTTCAAGGGGACCCATAGCCTTTTGGGCCC...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGGCCACATCTCTGGGTaGGGGTGCCTCAGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRGHISG*GCLRFL
Trigger: CAGGAACCTGAGGCACCCCCACCCAGAGATGTGGCC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGGGCCACATCTCTGGGTaGGGGTGCCTCAGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLGHISG*GCLRFL
Trigger: CAGGAACCTGAGGCACCCCCACCCAGAGATGTGGCC...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGTCTCAGCCCTCGCCTTaGCTTCGGCAGCAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLSQPSP*LRQQPQ
Trigger: CTGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGA...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTCACTGGCACCAGCACTaGCACTGCCACTGGCACCAA +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSHWHQH*HCHWHQ
Trigger: TTGGTGCCAGTGGCAGTGCCAGTGCTGGTGCCAGTG...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACTGGCACCAGCACTaGCACTGCCACTGGCACCAA +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVHWHQH*HCHWHQ
Trigger: TTGGTGCCAGTGGCAGTGCCAGTGCTGGTGCCAGTG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGACACTGGCACCAGCACTaGCACCAGCACTGGCACTGC +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRHWHQH*HQHWHC
Trigger: GCAGTGCCAGTGCTGGTGCCAGTGCTGGTGCCAGTG...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCAGAGCTGCTGTTaGTACTGGCCCCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVHQSCC*YWPQLH
Trigger: GTGGAGCTGGGGCCAGTACCAACAGCAGCTCTGGTG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACATTGCCTCTCGGTACTaGGCTGCCCATTCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHIASRY*AAHSLG
Trigger: TCCCAAGGAATGGGCAGCTCAGTACCGAGAGGCAAT...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCGAAGAGCCCAAATGTaGGACTGGCAGTCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRRAQM*DWQSGW
Trigger: CCAGCCTGACTGCCAGTCTCACATTTGGGCTCTTCG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGACTCTTGTTTTCAGTTaGCAGAACTTGGGTCTCACT +
Preference number: 4 (lower is better)
Translates to: AVSLHTFQAYLQPSRPHETLVFS*QNLGLT
Trigger: AGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGT...CTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAAGAGTCCTTGATGCCCTaGGGGCCCAAAAGGCTATGG +
Preference number: 4 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQESLMP*GPKRLW
Trigger: CCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTC...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGGGCAGCAGCCTCAGCTaGAGCCTTCAAATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTGSSLS*SLQICF
Trigger: GAAGCAGATTTGAAGGCTGCAGCTGAGGCTGCTGCC...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACGGCAGCAGCCTCAGCTaGAGCCTTCAAATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHGSSLS*SLQICF
Trigger: GAAGCAGATTTGAAGGCTGCAGCTGAGGCTGCTGCC...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCAGCTTCGTCCCAGTTaGAGGGCCCAGCGGCATTCT +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLQLRPS*RAQRHS
Trigger: AGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTCTGGATCCGGGCCTTTaGCCAGGGTCCAATATCAGC +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSLDPGL*PGSNIS
Trigger: GCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAG...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGACACAGGCACCAGAGCTaGTGTTGGTACTGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRHRHQS*CWYWPQ
Trigger: CTGGGGCCAGTACCAACAGCAGCTCTGGTGCCTGTG...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGGCCCTGAGAGCGAGCTaGATCTGCACCACTCTCGCT +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLALRAS*ICTTLA
Trigger: AGCGAGAGTGGTGCAGATCCAGCTCGCTCTCAGGGC...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGCCCTGAGAGCGAGCTaGATCTGCACCACTCTCGCT +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRALRAS*ICTTLA
Trigger: AGCGAGAGTGGTGCAGATCCAGCTCGCTCTCAGGGC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCCTTCGACCACCTGTaGCTTCTGAAGCCTGACTCT +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHPFDHL*LLKPDS
Trigger: AGAGTCAGGCTTCAGAAGCCACAGGTGGTCGAAGGG...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACAAGCTCTGCGAGCCATaGAGGCCATTAGGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHKLCEP*RPLGPL
Trigger: CAAAGGCCCTAATGGCCTCCATGGCTCGCAGAGCTT...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGAAGCTCTGCGAGCCATaGAGGCCATTAGGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTKLCEP*RPLGPL
Trigger: CAAAGGCCCTAATGGCCTCCATGGCTCGCAGAGCTT...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCACCAGAGCTGCTGTTaGTACTGGCCCCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLHQSCC*YWPQLH
Trigger: GTGGAGCTGGGGCCAGTACCAACAGCAGCTCTGGTG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACAGCCTTTGCAGCCTCTaGAACCTCTGGTGCCTTTTC +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHSLCSL*NLWCLF
Trigger: GAAAAGGCACCAGAGGTTTCAGAGGCTGCAAAGGCT...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp ACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAACCACCTGTGGCTTCTaGAGCCTGACTCTGGTCACT +
Preference number: 4 (lower is better)
Translates to: TVKPQQCLCTRSRLISNPTTCGF*SLTLVT
Trigger: AGTGACCAGAGTCAGGCTTCAGAAGCCACAGGTGGT...TGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTAGCCCAATGCCCATCTaGGCTCTAATCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSSPMPI*ALISAL
Trigger: GAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCT...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCGAAGAGCCCAAATGTaGGACTGGCAGTCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLRRAQM*DWQSGW
Trigger: CCAGCCTGACTGCCAGTCTCACATTTGGGCTCTTCG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGAGAGCGAGCTGGATCTaGACCACTCTCGCTTGTGTC +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRASWI*TTLACV
Trigger: GACACAAGCGAGAGTGGTGCAGATCCAGCTCGCTCT...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGAGTCCTTGATGCCCTaGGGGCCCAAAAGGCTATGG +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRESLMP*GPKRLW
Trigger: CCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCTCTCGGTACTGAGCTaGCCATTCCTTGGGATCCTT +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTLSVLS*PFLGIL
Trigger: AAGGATCCCAAGGAATGGGCAGCTCAGTACCGAGAG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCTGGATCCGGGCCTTTaGCCAGGGTCCAATATCAGC +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLLDPGL*PGSNIS
Trigger: GCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTAGTTTCAGCTCCTaGCTGGATCCGGGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTFSFSS*LDPGLC
Trigger: GCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAA...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGAGACCTCCAAGTTCTaGGTCACGGTCAACAGGTCC +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSETSKF*VTVNRS
Trigger: GGACCTGTTGACCGTGACCCAGAACTTGGAGGTCTC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACAAGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCGACCTCTGTCGCCTTTaGGTTCCCAGAGGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: TSHSKTTAVSLHTFQAYLDLCRL*VPRGFW
Trigger: CCAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTC...GAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGGACCTCTGTCGCCTTTaGGTTCCCAGAGGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVDLCRL*VPRGFW
Trigger: CCAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTC...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGACCTCTGTCGCCTTTaGGTTCCCAGAGGCTTTTGG +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSDLCRL*VPRGFW
Trigger: CCAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCAGACTTCTGCGTCTTaGTGTCAGCTGCTGGACTCT +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHQTSAS*CQLLDS
Trigger: AGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTG...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGAAGCTCTGCGAGCCATaGAGGCCATTAGGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVKLCEP*RPLGPL
Trigger: CAAAGGCCCTAATGGCCTCCATGGCTCGCAGAGCTT...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGTGCTATTGGGTACTCTaGCATAGTCCAGGTACTTCT +
Preference number: 4 (lower is better)
Translates to: DSGCLECCIEYVSESAPWCYWVL*HSPGTS
Trigger: AGAAGTACCTGGACTATGCCAGAGTACCCAATAGCA...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACTGCCTTTGGTGTTTCTaGGACCTCCAAGTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHCLWCF*DLQVLG
Trigger: ACCCAGAACTTGGAGGTCTCAGAAACACCAAAGGCA...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGGGGTATTCTTGGCTTTaGCCTTGGGCCGAGTATCCT +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVGYSWL*PWAEYP
Trigger: AGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCC...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGGGTATTCTTGGCTTTaGCCTTGGGCCGAGTATCCT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSGYSWL*PWAEYP
Trigger: AGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp CAAACAAGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATGTGGCTTCTGAAGCCTaGCTCTGGTCACTGTTGCCA +
Preference number: 4 (lower is better)
Translates to: QTSHSKTTAVSLHTFQAYVASEA*LWSLLP
Trigger: TGGCAACAGTGACCAGAGTCAGGCTTCAGAAGCCAC...ATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGGCTTCTGAAGCCTaGCTCTGGTCACTGTTGCCA +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRVASEA*LWSLLP
Trigger: TGGCAACAGTGACCAGAGTCAGGCTTCAGAAGCCAC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGACCACCTGTGGCTTCTaGAGCCTGACTCTGGTCACT +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLTTCGF*SLTLVT
Trigger: AGTGACCAGAGTCAGGCTTCAGAAGCCACAGGTGGT...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp AACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCTTGGCTCTAAGGTACTaGGAAGAATATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: NHSSVFAHVPGLSPTQPPLALRY*EEYTSG
Trigger: ACCACTTGTATATTCTTCTCAGTACCTTAGAGCCAA...GGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGATTGCCTCTCGGTACTaGGCTGCCCATTCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLIASRY*AAHSLG
Trigger: TCCCAAGGAATGGGCAGCTCAGTACCGAGAGGCAAT...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGCCCAATGCCCATCTaGGCTCTAATCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLSPMPI*ALISAL
Trigger: GAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCT...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTGCAGGTCAGACTTCTaGGTCTTGGTGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSCRSDF*VLVSAA
Trigger: AGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGTGCAGGTCAGACTTCTaGGTCTTGGTGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVCRSDF*VLVSAA
Trigger: AGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCA...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGGCATTGTCATAGCCTaGAGGTCAGACTTCTGCGTC +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSGIVIA*RSDFCV
Trigger: GACGCAGAAGTCTGACCTGCAGGCTATGACAATGCC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGGCAGCAGCCTCAGCTaGAGCCTTCAAATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRGSSLS*SLQICF
Trigger: GAAGCAGATTTGAAGGCTGCAGCTGAGGCTGCTGCC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGTTTAGTTTCAGCTCCTaGCTGGATCCGGGCCTTTGC +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVFSFSS*LDPGLC
Trigger: GCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAA...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACTCAGTTGCCAGAACTTaGGTCTCACTCAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHSVART*VSLSCV
Trigger: CACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGA...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGGAGCTGCCCATTCCTTaGGATCCTTCTTTTGCACCT +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTELPIP*DPSFAP
Trigger: AGGTGCAAAAGAAGGATCCCAAGGAATGGGCAGCTC...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
3UTR CAA 72 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATaGAGTACGTTTCTGAGAGTGCACCCTGGCTTGAGA +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAA*STFLRVHPGLR
Trigger: TCTCAAGCCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp ACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCATGCCTTTGGTGTTTCTaGGACCTCCAAGTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: TVKPQQCLCTRSRLISNPCLWCF*DLQVLG
Trigger: ACCCAGAACTTGGAGGTCTCAGAAACACCAAAGGCA...TGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR TCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTGCCTTTGGTGTTTCTaGGACCTCCAAGTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSCLWCF*DLQVLG
Trigger: ACCCAGAACTTGGAGGTCTCAGAAACACCAAAGGCA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCGTCTTGGTGTCAGCTaGTGGACTCTTGTTTTCAGT +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHRLGVS*WTLVFS
Trigger: ACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACG...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGATGCAGGTCAGACTTCTaGGTCTTGGTGTCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRCRSDF*VLVSAA
Trigger: AGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCA...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGGCATTGTCATAGCCTaGAGGTCAGACTTCTGCGTC +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRGIVIA*RSDFCV
Trigger: GACGCAGAAGTCTGACCTGCAGGCTATGACAATGCC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGTCAGTTGCCAGAACTTaGGTCTCACTCAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVSVART*VSLSCV
Trigger: CACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGA...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTCAGTTGCCAGAACTTaGGTCTCACTCAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSSVART*VSLSCV
Trigger: CACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCTTGGTGTCAGCTGCTaGACTCTTGTTTTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTLGVSC*TLVFSC
Trigger: GCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCAGACTTCTGCGTCTTaGTGTCAGCTGCTGGACTCT +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLQTSAS*CQLLDS
Trigger: AGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCAGGAGGATTGCTATTaGGTACTCTGGCATAGTCCA +
Preference number: 4 (lower is better)
Translates to: SKTTAVSLHTFQAYLQPSQEDCY*VLWHSP
Trigger: TGGACTATGCCAGAGTACCCAATAGCAATCCTCCTG...GCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCAGGAGGATTGCTATTaGGTACTCTGGCATAGTCCA +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTQEDCY*VLWHSP
Trigger: TGGACTATGCCAGAGTACCCAATAGCAATCCTCCTG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGAGCTGCCCATTCCTTaGGATCCTTCTTTTGCACCT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSELPIP*DPSFAP
Trigger: AGGTGCAAAAGAAGGATCCCAAGGAATGGGCAGCTC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACAGCCTGCTCGTTCAATaGTTTCAGGGTATACATCAG +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHSLLVQ*FQGIHQ
Trigger: CTGATGTATACCCTGAAATCATTGAACGAGCAGGCT...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGAGCCTGCTCGTTCAATaGTTTCAGGGTATACATCAG +
Preference number: 4 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTSLLVQ*FQGIHQ
Trigger: CTGATGTATACCCTGAAATCATTGAACGAGCAGGCT...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCCTTTTCTGAAGCTTTaGCCTGAGAGCGAGCTGGAT +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLPFLKL*PESELD
Trigger: ATCCAGCTCGCTCTCAGGGCAAAGCTTCAGAAAAGG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCGTCTTGGTGTCAGCTaGTGGACTCTTGTTTTCAGT +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRLGVS*WTLVFS
Trigger: ACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTCGTCTTGGTGTCAGCTaGTGGACTCTTGTTTTCAGT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSRLGVS*WTLVFS
Trigger: ACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACG...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCTCCAAGGAATAGCCTaGTCGTTCAATGATTTCAGG +
Preference number: 4 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHLQGIA*SFNDFR
Trigger: CCTGAAATCATTGAACGAGCAGGCTATTCCTTGGAG...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCTTGGGATCCTTCTTTTaGACCTTACAAGCAAACTTG +
Preference number: 4 (lower is better)
Translates to: KTTAVSLHTFQAYLQPSRLGSFF*TLQANL
Trigger: CAAGTTTGCTTGTAAGGTGCAAAAGAAGGATCCCAA...GCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCAGGAGGATTGCTATTaGGTACTCTGGCATAGTCCA +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVQEDCY*VLWHSP
Trigger: TGGACTATGCCAGAGTACCCAATAGCAATCCTCCTG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGCACCACCACTTCCTTaGGCTTTGGCTTTAGTTTCA +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSAPPLP*ALALVS
Trigger: TGAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGGCACCACCACTTCCTTaGGCTTTGGCTTTAGTTTCA +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVAPPLP*ALALVS
Trigger: TGAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGC...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp ACAAGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCTCCAAGGAATAGCCTaGTCGTTCAATGATTTCAGG +
Preference number: 4 (lower is better)
Translates to: TSHSKTTAVSLHTFQAYLLQGIA*SFNDFR
Trigger: CCTGAAATCATTGAACGAGCAGGCTATTCCTTGGAG...GAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTCTCCAAGGAATAGCCTaGTCGTTCAATGATTTCAGG +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSLQGIA*SFNDFR
Trigger: CCTGAAATCATTGAACGAGCAGGCTATTCCTTGGAG...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGACTTGGTGTCAGCTGCTaGACTCTTGTTTTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRLGVSC*TLVFSC
Trigger: GCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAG...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTGCTATTGGGTACTCTaGCATAGTCCAGGTACTTCT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSCYWVL*HSPGTS
Trigger: AGAAGTACCTGGACTATGCCAGAGTACCCAATAGCA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGCACCACCACTTCCTTaGGCTTTGGCTTTAGTTTCA +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRAPPLP*ALALVS
Trigger: TGAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAAGCCTGCTCGTTCAATaGTTTCAGGGTATACATCAG +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRSLLVQ*FQGIHQ
Trigger: CTGATGTATACCCTGAAATCATTGAACGAGCAGGCT...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACTCTTGTTTTCAGTTaGCAGAACTTGGGTCTCACT +
Preference number: 4 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSTLVFS*QNLGLT
Trigger: AGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGT...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CCA 90 bp ACAAGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCATGGGAATCTTTGTCTaGTCTTTAGCCAACAGGTAC +
Preference number: 4 (lower is better)
Translates to: TSHSKTTAVSLHTFQAYLMGIFV*SLANRY
Trigger: GTACCTGTTGGCTAAAGACCAGACAAAGATTCCCAT...GAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGATGGGAATCTTTGTCTaGTCTTTAGCCAACAGGTAC +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVMGIFV*SLANRY
Trigger: GTACCTGTTGGCTAAAGACCAGACAAAGATTCCCAT...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGTTGGCTCTAAGGTACTaGGAAGAATATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVLALRY*EEYTSG
Trigger: ACCACTTGTATATTCTTCTCAGTACCTTAGAGCCAA...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR TCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGATTGGCTCTAAGGTACTaGGAAGAATATACAAGTGGT +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRLALRY*EEYTSG
Trigger: ACCACTTGTATATTCTTCTCAGTACCTTAGAGCCAA...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGTTGGGATCCTTCTTTTaGACCTTACAAGCAAACTTG +
Preference number: 4 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLLGSFF*TLQANL
Trigger: CAAGTTTGCTTGTAAGGTGCAAAAGAAGGATCCCAA...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR GCA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGATTGGGATCCTTCTTTTaGACCTTACAAGCAAACTTG +
Preference number: 4 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRLGSFF*TLQANL
Trigger: CAAGTTTGCTTGTAAGGTGCAAAAGAAGGATCCCAA...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
3UTR CAA 72 bp CAATCTGCAAACACAAGTAAAGGAAAAATCAGTCAGTaGATATCTAGCAAACAAGCCACAGTAAAACCACAG +
Preference number: 4 (lower is better)
Translates to: QSANTSKGKISQ*ISSKQATVKPQ
Trigger: CTGTGGTTTTACTGTGGCTTGTTTGCTAGATATCAACTGACTGATTTTTCCTTTACTTGTGTTTGCAGATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp TCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGCCCCAGTCAGCTTCGTCCCAGTaGCAGGGCCCAGCGGCATTC +
Preference number: 5 (lower is better)
Translates to: SLHTFQAYLQPSRPHEPQSASSQ*QGPAAF
Trigger: GAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGA...CTGGGGCTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS TCA 90 bp TTGCAGGGCCCAGCGGCATTCTCAGAGCCAAGCCCAATGCCCATCTaGGCTCTAATCTCAGCCCTCGCCTTGGCTTCGGCAGCAGCCTCA +
Preference number: 5 (lower is better)
Translates to: LQGPAAFSEPSPMPI*ALISALALASAAAS
Trigger: TGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCTTGGCTCTGAGAATGCCGCTGGGCCCTGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 90 bp GGATCCGGGCCTTTGCCCAGGGTCCAATATCAGCTTCGTCCCAGTTaGAGGGCCCAGCGGCATTCTCAGAGCCAAGCCCAATGCCCATCT +
Preference number: 5 (lower is better)
Translates to: GSGPLPRVQYQLRPS*RAQRHSQSQAQCPS
Trigger: AGATGGGCATTGGGCTTGGCTCTGAGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 90 bp TGCGGGCCCAAAAGGCTATGGGTCCCCTTGAAGCTCTGCGAGCCATaGAGGCCATTAGGGCCTTTGAGACCCTTCGACCACCTGTGGCTT +
Preference number: 5 (lower is better)
Translates to: CGPKRLWVPLKLCEP*RPLGPLRPFDHLWL
Trigger: AAGCCACAGGTGGTCGAAGGGTCTCAAAGGCCCTAATGGCCTCCATGGCTCGCAGAGCTTCAAGGGGACCCATAGCCTTTTGGGCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS GCA 90 bp TTGGGCTTTGGCTTTAGTTTCAGCTCCTGCCTGGATCCGGGCCTTTaGCCAGGGTCCAATATCAGCTTCGTCCCAGTTGCAGGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: LGFGFSFSSCLDPGL*PGSNISFVPVAGPS
Trigger: GCTGGGCCCTGCAACTGGGACGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAAGCCAAAGCCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGTCAGCTTCGTCCCAGTaGCAGGGCCCAGCGGCATTC +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWSASSQ*QGPAAF
Trigger: GAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGA...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 90 bp GCACCACCACTTCCTTGGGCTTTGGCTTTAGTTTCAGCTCCTGCCTaGATCCGGGCCTTTGCCCAGGGTCCAATATCAGCTTCGTCCCAG +
Preference number: 5 (lower is better)
Translates to: APPLPWALALVSAPA*IRAFAQGPISASSQ
Trigger: CTGGGACGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGAGGCTATGGGTCCCCTaGAAGCTCTGCGAGCCATGG +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWRLWVP*KLCEPW
Trigger: CCATGGCTCGCAGAGCTTCAAGGGGACCCATAGCCT...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGCTCTTCTTCGGGCCTaGCCTCTGCGAGCTCTAGGT +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWALLRA*PLRALG
Trigger: ACCTAGAGCTCGCAGAGGCAAGGCCCGAAGAAGAGC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGGCAGTCAGGCTGGAGTaGTTACTGAAGCCACCACTG +
Preference number: 5 (lower is better)
Translates to: AVSLHTFQAYLQPSRPHEAVRLE*LLKPPL
Trigger: CAGTGGTGGCTTCAGTAACAACTCCAGCCTGACTGC...CTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS CCA 90 bp GAGCCATGGAGGCCATTAGGGCCTTTGAGACCCTTCGACCACCTGTaGCTTCTGAAGCCTGACTCTGGTCACTGTTGCCATCCTCTTCTC +
Preference number: 5 (lower is better)
Translates to: EPWRPLGPLRPFDHL*LLKPDSGHCCHPLL
Trigger: GAGAAGAGGATGGCAACAGTGACCAGAGTCAGGCTTCAGAAGCCACAGGTGGTCGAAGGGTCTCAAAGGCCCTAATGGCCTCCATGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS-3UTR CAA 90 bp AAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCTGGATCCGGGCCTTaGCCCAGGGTCCAATATCAG +
Preference number: 5 (lower is better)
Translates to: KTTAVSLHTFQAYLQPSRPGSGP*PRVQYQ
Trigger: CTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGG...GCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS GCA 90 bp GGCTTCGGCAGCAGCCTCAGCTGCAGCCTTCAAATCTGCTTCCATTaGCTCTCGGTACTGAGCTGCCCATTCCTTGGGATCCTTCTTTTG +
Preference number: 5 (lower is better)
Translates to: GFGSSLSCSLQICFH*LSVLSCPFLGILLL
Trigger: CAAAAGAAGGATCCCAAGGAATGGGCAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGCAGCTGAGGCTGCTGCCGAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 90 bp GTCTTGGTGTCAGCTGCTGGACTCTTGTTTTCAGTTGCCAGAACTTaGGTCTCACTCAGCTGTGTGGTAGGTGAGGCCTGGGTGGCAGCT +
Preference number: 5 (lower is better)
Translates to: VLVSAAGLLFSVART*VSLSCVVGEAWVAA
Trigger: AGCTGCCACCCAGGCCTCACCTACCACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS-3UTR CAA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGATCTCAGCCCTCGCCTaGGCTTCGGCAGCAGCCTCA +
Preference number: 5 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTISALA*ASAAAS
Trigger: TGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGAT...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACTCAGCTTCGTCCCAGTaGCAGGGCCCAGCGGCATTC +
Preference number: 5 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHSASSQ*QGPAAF
Trigger: GAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGA...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS TCA 90 bp ATTAGGGCCTTTGAGACCCTTCGACCACCTGTGGCTTCTGAAGCCTaGCTCTGGTCACTGTTGCCATCCTCTTCTCCATCCGGGTGTTTC +
Preference number: 5 (lower is better)
Translates to: IRAFETLRPPVASEA*LWSLLPSSSPSGCF
Trigger: GAAACACCCGGATGGAGAAGAGGATGGCAACAGTGACCAGAGTCAGGCTTCAGAAGCCACAGGTGGTCGAAGGGTCTCAAAGGCCCTAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS GCA 90 bp CCACAGCTGACCTTTTTGGTCGGGGTTGTAGGCATTGTCATAGCCTaGAGGTCAGACTTCTGCGTCTTGGTGTCAGCTGCTGGACTCTTG +
Preference number: 5 (lower is better)
Translates to: PQLTFLVGVVGIVIA*RSDFCVLVSAAGLL
Trigger: CAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCAGGCTATGACAATGCCTACAACCCCGACCAAAAAGGTCAGCTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS GCA 90 bp CCCTTCGACCACCTGTGGCTTCTGAAGCCTGACTCTGGTCACTGTTaGCATCCTCTTCTCCATCCGGGTGTTTCCCCTTTTGGGTATTCT +
Preference number: 5 (lower is better)
Translates to: PFDHLWLLKPDSGHC*HPLLHPGVSPFGYS
Trigger: AGAATACCCAAAAGGGGAAACACCCGGATGGAGAAGAGGATGGCAACAGTGACCAGAGTCAGGCTTCAGAAGCCACAGGTGGTCGAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CCA 90 bp CTGAGAGGCAGGAGCCTCAGTCTCCGGAGCCTTTGTATTGACCTTTaGATCGGTACCACAGCTGACCTTTTTGGTCGGGGTTGTAGGCAT +
Preference number: 5 (lower is better)
Translates to: LRGRSLSLRSLCIDL*IGTTADLFGRGCRH
Trigger: ATGCCTACAACCCCGACCAAAAAGGTCAGCTGTGGTACCGATCCAAAGGTCAATACAAAGGCTCCGGAGACTGAGGCTCCTGCCTCTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS-3UTR CAA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACACGCCTCTGGGGCCTTaGAGACCTCTGTCGCCTTTG +
Preference number: 5 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHTPLGP*RPLSPL
Trigger: CAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCGT...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCCCATGAGTCAGCTGCTGGACTCTaGTTTTCAGTTGCCAGAACT +
Preference number: 5 (lower is better)
Translates to: AVSLHTFQAYLQPSRPHESAAGL*FSVART
Trigger: AGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGA...CTCATGGGGGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp AAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCTTCTTGGCTTTGACCTaGGGCCGAGTATCCTGGTTC +
Preference number: 5 (lower is better)
Translates to: KPQQCLCTRSRLISNPAAFLALT*GRVSWF
Trigger: GAACCAGGATACTCGGCCCAAGGTCAAAGCCAAGAA...GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGTTCTTGGCTTTGACCTaGGGCCGAGTATCCTGGTTC +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWFLALT*GRVSWF
Trigger: GAACCAGGATACTCGGCCCAAGGTCAAAGCCAAGAA...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCAGGCTATGGGTCCCCTaGAAGCTCTGCGAGCCATGG +
Preference number: 5 (lower is better)
Translates to: SKTTAVSLHTFQAYLQPSRLWVP*KLCEPW
Trigger: CCATGGCTCGCAGAGCTTCAAGGGGACCCATAGCCT...GCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACAGCCAACCGAGTCCTaGATGCCCTGCGGGCCCAAA +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQQPTES*MPCGPK
Trigger: TTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTG...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTCAGCCAACCGAGTCCTaGATGCCCTGCGGGCCCAAA +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSQPTES*MPCGPK
Trigger: TTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTG...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACGCTCTTCTTCGGGCCTaGCCTCTGCGAGCTCTAGGT +
Preference number: 5 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHALLRA*PLRALG
Trigger: ACCTAGAGCTCGCAGAGGCAAGGCCCGAAGAAGAGC...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAAATCTCAGCCCTCGCCTaGGCTTCGGCAGCAGCCTCA +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQISALA*ASAAAS
Trigger: TGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGAT...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGGCACCACCACTTCCTaGGGCTTTGGCTTTAGTTTC +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWGTTTS*GFGFSF
Trigger: GAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGCC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGGCACCAGAGCTGCTGTaGGTACTGGCCCCAGCTCCA +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVAPELL*VLAPAP
Trigger: TGGAGCTGGGGCCAGTACCAACAGCAGCTCTGGTGC...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 90 bp TGGTCACTGTTGCCATCCTCTTCTCCATCCGGGTGTTTCCCCTTTTaGGTATTCTTGGCTTTGACCTTGGGCCGAGTATCCTGGTTCTCC +
Preference number: 5 (lower is better)
Translates to: WSLLPSSSPSGCFPF*VFLALTLGRVSWFS
Trigger: GGAGAACCAGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCCAAAAGGGGAAACACCCGGATGGAGAAGAGGATGGCAACAGTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGTGCCTTTTCTGCCTTaGGTGTTTCTGAGACCTCCA +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWVPFLP*VFLRPP
Trigger: TGGAGGTCTCAGAAACACCAAAGGCAGAAAAGGCAC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCGGTTCCCAGAGGCTTTaGGAGCCTTTGCAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: SKTTAVSLHTFQAYLQPSGSQRL*EPLQPL
Trigger: CAGAGGCTGCAAAGGCTCCAAAAGCCTCTGGGAACC...GCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCCTCTGGGGCCTTaGAGACCTCTGTCGCCTTTG +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSTPLGP*RPLSPL
Trigger: CAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCGT...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCCGCCCGGGTGTTTCCCCTTTaGGGTATTCTTGGCTTTGAC +
Preference number: 5 (lower is better)
Translates to: KPQQCLCTRSRLISNPAARVFPL*GILGFD
Trigger: GTCAAAGCCAAGAATACCCAAAAGGGGAAACACCCG...GGCGGCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp AGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAACCCAGCAGGCCATTAGGGCCTTaGAGACCCTTCGACCACCTG +
Preference number: 5 (lower is better)
Translates to: SKTTAVSLHTFQAYLQPSRPLGP*RPFDHL
Trigger: CAGGTGGTCGAAGGGTCTCAAAGGCCCTAATGGCCT...GCTGGGTTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCAGCCAACCGAGTCCTaGATGCCCTGCGGGCCCAAA +
Preference number: 5 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLQPTES*MPCGPK
Trigger: TTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAAGCTCTTCTTCGGGCCTaGCCTCTGCGAGCTCTAGGT +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQALLRA*PLRALG
Trigger: ACCTAGAGCTCGCAGAGGCAAGGCCCGAAGAAGAGC...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGTCAAATCTGCTTCCATaGCCTCTCGGTACTGAGCTG +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWSNLLP*PLGTEL
Trigger: CAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGA...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAATCTCAGCCCTCGCCTaGGCTTCGGCAGCAGCCTCA +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRISALA*ASAAAS
Trigger: TGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAGAT...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCCTGGATCCGGGCCTTaGCCCAGGGTCCAATATCAG +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVPGSGP*PRVQYQ
Trigger: CTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGGCACCAGAGCTGCTGTaGGTACTGGCCCCAGCTCCA +
Preference number: 5 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLAPELL*VLAPAP
Trigger: TGGAGCTGGGGCCAGTACCAACAGCAGCTCTGGTGC...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS TCA 90 bp GCCTCAGCTGCAGCCTTCAAATCTGCTTCCATTGCCTCTCGGTACTaGGCTGCCCATTCCTTGGGATCCTTCTTTTGCACCTTACAAGCA +
Preference number: 5 (lower is better)
Translates to: ASAAAFKSASIASRY*AAHSLGSFFCTLQA
Trigger: TGCTTGTAAGGTGCAAAAGAAGGATCCCAAGGAATGGGCAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGCAGCTGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 90 bp TTGGTCGGGGTTGTAGGCATTGTCATAGCCTGCAGGTCAGACTTCTaGGTCTTGGTGTCAGCTGCTGGACTCTTGTTTTCAGTTGCCAGA +
Preference number: 5 (lower is better)
Translates to: LVGVVGIVIACRSDF*VLVSAAGLLFSVAR
Trigger: TCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCAGGCTATGACAATGCCTACAACCCCGACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGGTTCCCAGAGGCTTTaGGAGCCTTTGCAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSGSQRL*EPLQPL
Trigger: CAGAGGCTGCAAAGGCTCCAAAAGCCTCTGGGAACC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACCCTGGGACTCTTGTTTTCAGTaGCCAGAACTTGGGTCTCAC +
Preference number: 5 (lower is better)
Translates to: DSGCLECCIEYVSESAPWDSCFQ*PELGSH
Trigger: GTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTC...CCAGGGTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTAGGCCATTAGGGCCTTaGAGACCCTTCGACCACCTG +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSRPLGP*RPFDHL
Trigger: CAGGTGGTCGAAGGGTCTCAAAGGCCCTAATGGCCT...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGAGGCCATTAGGGCCTTaGAGACCCTTCGACCACCTG +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRPLGP*RPFDHL
Trigger: CAGGTGGTCGAAGGGTCTCAAAGGCCCTAATGGCCT...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGACCTGGATCCGGGCCTTaGCCCAGGGTCCAATATCAG +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRPGSGP*PRVQYQ
Trigger: CTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGG...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 90 bp CATTGTCATAGCCTGCAGGTCAGACTTCTGCGTCTTGGTGTCAGCTaGTGGACTCTTGTTTTCAGTTGCCAGAACTTGGGTCTCACTCAG +
Preference number: 5 (lower is better)
Translates to: HCHSLQVRLLRLGVS*WTLVFSCQNLGLTQ
Trigger: CTGAGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCAGGCTATGACAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAAAGACCTCTGTCGCCTTaGGGTTCCCAGAGGCTTTTG +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQRPLSP*GSQRLL
Trigger: CAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTCT...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGAGACCTCTGTCGCCTTaGGGTTCCCAGAGGCTTTTG +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRPLSP*GSQRLL
Trigger: CAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTCT...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAATCAGACTTCTGCGTCTaGGTGTCAGCTGCTGGACTC +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQSDFCV*VSAAGL
Trigger: GAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGA...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGTCAGACTTCTGCGTCTaGGTGTCAGCTGCTGGACTC +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVSDFCV*VSAAGL
Trigger: GAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGA...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACGTGCCTTTTCTGCCTTaGGTGTTTCTGAGACCTCCA +
Preference number: 5 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHVPFLP*VFLRPP
Trigger: TGGAGGTCTCAGAAACACCAAAGGCAGAAAAGGCAC...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTCAGTTGCCAGAACTaGGGTCTCACTCAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTFSCQN*GLTQLC
Trigger: ACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGAA...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGATCAGACTTCTGCGTCTaGGTGTCAGCTGCTGGACTC +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRSDFCV*VSAAGL
Trigger: GAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGA...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTCCGGAGCCTTTGTATaGACCTTTGGATCGGTACCA +
Preference number: 5 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTSGAFV*TFGSVP
Trigger: TGGTACCGATCCAAAGGTCAATACAAAGGCTCCGGA...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTTCTTGGCTTTGACCTaGGGCCGAGTATCCTGGTTC +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSFLALT*GRVSWF
Trigger: GAACCAGGATACTCGGCCCAAGGTCAAAGCCAAGAA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGCCACTTCCTTGGGCTTaGGCTTTAGTTTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: VSTSVDLIVAAWSAALSTPLPWA*ALVSAP
Trigger: AGGAGCTGAAACTAAAGCCAAAGCCCAAGGAAGTGG...CGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTGGCACCACCACTTCCTaGGGCTTTGGCTTTAGTTTC +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSGTTTS*GFGFSF
Trigger: GAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGCC...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGCAGTCAGGCTGGAGTaGTTACTGAAGCCACCACTG +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRAVRLE*LLKPPL
Trigger: CAGTGGTGGCTTCAGTAACAACTCCAGCCTGACTGC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAATTCAGTTGCCAGAACTaGGGTCTCACTCAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQFSCQN*GLTQLC
Trigger: ACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGAA...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACGACTCTTGTTTTCAGTaGCCAGAACTTGGGTCTCAC +
Preference number: 5 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHDSCFQ*PELGSH
Trigger: GTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTC...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCACTCAGCTGCTGGACTCTaGTTTTCAGTTGCCAGAACT +
Preference number: 5 (lower is better)
Translates to: DLIVAAWSAALSTFLRVHSAAGL*FSVART
Trigger: AGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGA...GTGCACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGTCCGGAGCCTTTGTATaGACCTTTGGATCGGTACCA +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVSGAFV*TFGSVP
Trigger: TGGTACCGATCCAAAGGTCAATACAAAGGCTCCGGA...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCGGGTGTTTCCCCTTTaGGGTATTCTTGGCTTTGAC +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVRVFPL*GILGFD
Trigger: GTCAAAGCCAAGAATACCCAAAAGGGGAAACACCCG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCAATCAAATCTGCTTCCATaGCCTCTCGGTACTGAGCTG +
Preference number: 5 (lower is better)
Translates to: SHSKTTAVSLHTFQAYLQSNLLP*PLGTEL
Trigger: CAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGA...TTGGAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp ACAAGCCACAGTAAAACCACAGCAGTGTCTTTGCACACGTTCCAGGCTTATCTCCCACTTCCTTGGGCTTaGGCTTTAGTTTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: TSHSKTTAVSLHTFQAYLPLPWA*ALVSAP
Trigger: AGGAGCTGAAACTAAAGCCAAAGCCCAAGGAAGTGG...GAGATAAGCCTGGAACGTGTGCAAAGACACTGCTGTGGTTTTACTGTGGCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026302.13
CDS-3UTR CAA 90 bp GTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCCACTTCCTTGGGCTTaGGCTTTAGTTTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: VDLIVAAWSAALSTFLRVPLPWA*ALVSAP
Trigger: AGGAGCTGAAACTAAAGCCAAAGCCCAAGGAAGTGG...CACTCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGGCACCACCACTTCCTaGGGCTTTGGCTTTAGTTTC +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRGTTTS*GFGFSF
Trigger: GAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGCC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGTGCCTTTTCTGCCTTaGGTGTTTCTGAGACCTCCA +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRVPFLP*VFLRPP
Trigger: TGGAGGTCTCAGAAACACCAAAGGCAGAAAAGGCAC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGTTCAGTTGCCAGAACTaGGGTCTCACTCAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLFSCQN*GLTQLC
Trigger: ACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGAA...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp AGAGTGTCGACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTTCAGCTGCTGGACTCTaGTTTTCAGTTGCCAGAACT +
Preference number: 5 (lower is better)
Translates to: RVSTSVDLIVAAWSAALSSAAGL*FSVART
Trigger: AGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGA...ACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGTCGACACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGATCCGGAGCCTTTGTATaGACCTTTGGATCGGTACCA +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRSGAFV*TFGSVP
Trigger: TGGTACCGATCCAAAGGTCAATACAAAGGCTCCGGA...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGCGGGTGTTTCCCCTTTaGGGTATTCTTGGCTTTGAC +
Preference number: 5 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLRVFPL*GILGFD
Trigger: GTCAAAGCCAAGAATACCCAAAAGGGGAAACACCCG...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp ACTTCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGTCAAATCTGCTTCCATaGCCTCTCGGTACTGAGCTG +
Preference number: 5 (lower is better)
Translates to: TSVDLIVAAWSAALSTFLSNLLP*PLGTEL
Trigger: CAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGA...CAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS-3UTR CAA 90 bp TCAGTTGATTTGATAGTGGCTGCCTGGAGTGCTGCATTGAGTACGTTTCTGAGAGACTCTTGTTTTCAGTaGCCAGAACTTGGGTCTCAC +
Preference number: 5 (lower is better)
Translates to: SVDLIVAAWSAALSTFLRDSCFQ*PELGSH
Trigger: GTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTC...TCTCAGAAACGTACTCAATGCAGCACTCCAGGCAGCCACTATCAAATCAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026302.13
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 90 bp ATGATGTCCTTCAGCATATCTGAGCGTCTGATGGGAATCTTTGTCTaGTCTTTAGCCAACAGGTACTTCACCAAGTCATTTGCCCTTCCT +
Preference number: 5 (lower is better)
Translates to: MMSFSISERLMGIFV*SLANRYFTKSFALP
Trigger: AGGAAGGGCAAATGACTTGGTGAAGTACCTGTTGGCTAAAGACCAGACAAAGATTCCCATCAGACGCTCAGATATGCTGAAGGACATCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CAA 72 bp GCAAAGCTCTCCGAGCCCAGGCAGCCAACCGAGTCCTaGATGCCCTGCGGGCCCAAAAGGCTATGGGTCCCC +
Preference number: 6 (lower is better)
Translates to: AKLSEPRQPTES*MPCGPKRLWVP
Trigger: GGGGACCCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTGCCTGGGCTCGGAGAGCTTTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS TCA 72 bp CAAAGCTCTCCGAGCCCAGGCAGCCAACCGAGTCCTTaGTGCCCTGCGGGCCCAAAAGGCTATGGGTCCCCT +
Preference number: 6 (lower is better)
Translates to: QSSPSPGSQPSP*CPAGPKGYGSP
Trigger: AGGGGACCCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTGCCTGGGCTCGGAGAGCTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CAA 90 bp TCAGGGAGAGCAAAGCTCTCCGAGCCCAGGCAGCCAACCGAGTCCTaGATGCCCTGCGGGCCCAAAAGGCTATGGGTCCCCTTGAAGCTC +
Preference number: 6 (lower is better)
Translates to: SGRAKLSEPRQPTES*MPCGPKRLWVPLKL
Trigger: GAGCTTCAAGGGGACCCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTCGGTTGGCTGCCTGGGCTCGGAGAGCTTTGCTCTCCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS TCA 72 bp TGCCAGAACTTGGGTCTCACTCAGCTGTGTGGTAGGTaGGGCCTGGGTGGCAGCTGCCTCAGACGCCTCTGG +
Preference number: 6 (lower is better)
Translates to: CQNLGLTQLCGR*GLGGSCLRRLW
Trigger: CCAGAGGCGTCTGAGGCAGCTGCCACCCAGGCCTCACCTACCACACAGCTGAGTGAGACCCAAGTTCTGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS TCA 72 bp AGCTCTTCTTCGGGCCTTGCCTCTGCGAGCTCTAGGTaGCCTCAGGGAGAGCAAAGCTCTCCGAGCCCAGGC +
Preference number: 6 (lower is better)
Translates to: SSSSGLASASSR*PQGEQSSPSPG
Trigger: GCCTGGGCTCGGAGAGCTTTGCTCTCCCTGAGGTCACCTAGAGCTCGCAGAGGCAAGGCCCGAAGAAGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CCA 72 bp ACTTGGGTCTCACTCAGCTGTGTGGTAGGTGAGGCCTaGGTGGCAGCTGCCTCAGACGCCTCTGGGGCCTTT +
Preference number: 6 (lower is better)
Translates to: TWVSLSCVVGEA*VAAASDASGAF
Trigger: AAAGGCCCCAGAGGCGTCTGAGGCAGCTGCCACCCAGGCCTCACCTACCACACAGCTGAGTGAGACCCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CCA 72 bp ACCGAGTCCTTGATGCCCTGCGGGCCCAAAAGGCTATaGGTCCCCTTGAAGCTCTGCGAGCCATGGAGGCCA +
Preference number: 6 (lower is better)
Translates to: TESLMPCGPKRL*VPLKLCEPWRP
Trigger: TGGCCTCCATGGCTCGCAGAGCTTCAAGGGGACCCATAGCCTTTTGGGCCCGCAGGGCATCAAGGACTCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CCA 72 bp TGGCACTGCCACTGGCACCAACACTGGTACCAGTACTaGCACCGGCACCAGCACTGGCATTGGCACCACCAC +
Preference number: 6 (lower is better)
Translates to: WHCHWHQHWYQY*HRHQHWHWHHH
Trigger: GTGGTGGTGCCAATGCCAGTGCTGGTGCCGGTGCCAGTACTGGTACCAGTGTTGGTGCCAGTGGCAGTGCCA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CAA 90 bp TGGATCCGGGCCTTTGCCCAGGGTCCAATATCAGCTTCGTCCCAGTaGCAGGGCCCAGCGGCATTCTCAGAGCCAAGCCCAATGCCCATC +
Preference number: 6 (lower is better)
Translates to: WIRAFAQGPISASSQ*QGPAAFSEPSPMPI
Trigger: GATGGGCATTGGGCTTGGCTCTGAGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CAA 72 bp GCCTTTGCCCAGGGTCCAATATCAGCTTCGTCCCAGTaGCAGGGCCCAGCGGCATTCTCAGAGCCAAGCCCA +
Preference number: 6 (lower is better)
Translates to: AFAQGPISASSQ*QGPAAFSEPSP
Trigger: TGGGCTTGGCTCTGAGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGATATTGGACCCTGGGCAAAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS TCA 72 bp CCAGCGGCATTCTCAGAGCCAAGCCCAATGCCCATCTaGGCTCTAATCTCAGCCCTCGCCTTGGCTTCGGCA +
Preference number: 6 (lower is better)
Translates to: PAAFSEPSPMPI*ALISALALASA
Trigger: TGCCGAAGCCAAGGCGAGGGCTGAGATTAGAGCTCAGATGGGCATTGGGCTTGGCTCTGAGAATGCCGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 72 bp CTCAGCCCTCGCCTTGGCTTCGGCAGCAGCCTCAGCTaGAGCCTTCAAATCTGCTTCCATTGCCTCTCGGTA +
Preference number: 6 (lower is better)
Translates to: LSPRLGFGSSLS*SLQICFHCLSV
Trigger: TACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGCAGCTGAGGCTGCTGCCGAAGCCAAGGCGAGGGCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 72 bp CCTTTGCCCAGGGTCCAATATCAGCTTCGTCCCAGTTaGAGGGCCCAGCGGCATTCTCAGAGCCAAGCCCAA +
Preference number: 6 (lower is better)
Translates to: PLPRVQYQLRPS*RAQRHSQSQAQ
Trigger: TTGGGCTTGGCTCTGAGAATGCCGCTGGGCCCTGCAACTGGGACGAAGCTGATATTGGACCCTGGGCAAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 72 bp GTTCTCCTGAACCTGGACAGCTGTACCCTCAGGCTCTaGTTCATCTGTCCCAGCCTGAGAGGCAGGAGCCTC +
Preference number: 6 (lower is better)
Translates to: VLLNLDSCTLRL*FICPSLRGRSL
Trigger: GAGGCTCCTGCCTCTCAGGCTGGGACAGATGAACCAGAGCCTGAGGGTACAGCTGTCCAGGTTCAGGAGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CAA 72 bp CAGACGCCTCTGGGGCCTTTGAGACCTCTGTCGCCTTaGGGTTCCCAGAGGCTTTTGGAGCCTTTGCAGCCT +
Preference number: 6 (lower is better)
Translates to: QTPLGPLRPLSP*GSQRLLEPLQP
Trigger: AGGCTGCAAAGGCTCCAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTCTCAAAGGCCCCAGAGGCGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 72 bp TGGGATGACTGTAGCTTCGCAGCTCTTCTTCGGGCCTaGCCTCTGCGAGCTCTAGGTGACCTCAGGGAGAGC +
Preference number: 6 (lower is better)
Translates to: WDDCSFAALLRA*PLRALGDLRES
Trigger: GCTCTCCCTGAGGTCACCTAGAGCTCGCAGAGGCAAGGCCCGAAGAAGAGCTGCGAAGCTACAGTCATCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CAA 90 bp TCAGGTTCCTGGGATGACTGTAGCTTCGCAGCTCTTCTTCGGGCCTaGCCTCTGCGAGCTCTAGGTGACCTCAGGGAGAGCAAAGCTCTC +
Preference number: 6 (lower is better)
Translates to: SGSWDDCSFAALLRA*PLRALGDLRESKAL
Trigger: GAGAGCTTTGCTCTCCCTGAGGTCACCTAGAGCTCGCAGAGGCAAGGCCCGAAGAAGAGCTGCGAAGCTACAGTCATCCCAGGAACCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS TCA 72 bp CAACAGGTCCTGCATCACGGAGCCGCTGTCCTTTTCTaGAGCTTTGCCCTGAGAGCGAGCTGGATCTGCACC +
Preference number: 6 (lower is better)
Translates to: QQVLHHGAAVLF*SFALRASWICT
Trigger: GGTGCAGATCCAGCTCGCTCTCAGGGCAAAGCTTCAGAAAAGGACAGCGGCTCCGTGATGCAGGACCTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CCA 72 bp CAACACTGGTACCAGTACTGGCACCGGCACCAGCACTaGCATTGGCACCACCACTTCCTTGGGCTTTGGCTT +
Preference number: 6 (lower is better)
Translates to: QHWYQYWHRHQH*HWHHHFLGLWL
Trigger: AAGCCAAAGCCCAAGGAAGTGGTGGTGCCAATGCCAGTGCTGGTGCCGGTGCCAGTACTGGTACCAGTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 72 bp GGCTTTAGTTTCAGCTCCTGCCTGGATCCGGGCCTTTaGCCAGGGTCCAATATCAGCTTCGTCCCAGTTGCA +
Preference number: 6 (lower is better)
Translates to: GFSFSSCLDPGL*PGSNISFVPVA
Trigger: TGCAACTGGGACGAAGCTGATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CCA 72 bp AAAAGGCTATGGGTCCCCTTGAAGCTCTGCGAGCCATaGAGGCCATTAGGGCCTTTGAGACCCTTCGACCAC +
Preference number: 6 (lower is better)
Translates to: KRLWVPLKLCEP*RPLGPLRPFDH
Trigger: GTGGTCGAAGGGTCTCAAAGGCCCTAATGGCCTCCATGGCTCGCAGAGCTTCAAGGGGACCCATAGCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CAA 72 bp ACCGGCACCAGCACTGGCATTGGCACCACCACTTCCTaGGGCTTTGGCTTTAGTTTCAGCTCCTGCCTGGAT +
Preference number: 6 (lower is better)
Translates to: TGTSTGIGTTTS*GFGFSFSSCLD
Trigger: ATCCAGGCAGGAGCTGAAACTAAAGCCAAAGCCCAAGGAAGTGGTGGTGCCAATGCCAGTGCTGGTGCCGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CAA 90 bp CCGGAGCCTCTGTCGCCTTTGGGTTCCCAGAGGCTTTTGGAGCCTTaGCAGCCTCTGAAACCTCTGGTGCCTTTTCTGCCTTTGGTGTTT +
Preference number: 6 (lower is better)
Translates to: PEPLSPLGSQRLLEP*QPLKPLVPFLPLVF
Trigger: AAACACCAAAGGCAGAAAAGGCACCAGAGGTTTCAGAGGCTGCAAAGGCTCCAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGCTCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000147152.3
CDS GCA 72 bp ACCACTTCCTTGGGCTTTGGCTTTAGTTTCAGCTCCTaGCTGGATCCGGGCCTTTGCCCAGGGTCCAATATC +
Preference number: 6 (lower is better)
Translates to: TTSLGFGFSFSS*LDPGLCPGSNI
Trigger: GATATTGGACCCTGGGCAAAGGCCCGGATCCAGGCAGGAGCTGAAACTAAAGCCAAAGCCCAAGGAAGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS CAA 72 bp AAGAGCCCAAATGTGAGACTGGCAGTCAGGCTGGAGTaGTTACTGAAGCCACCACTGGCACCAGCACTGGCA +
Preference number: 6 (lower is better)
Translates to: KSPNVRLAVRLE*LLKPPLAPALA
Trigger: TGCCAGTGCTGGTGCCAGTGGTGGCTTCAGTAACAACTCCAGCCTGACTGCCAGTCTCACATTTGGGCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS TCA 72 bp TTTGAGACCCTTCGACCACCTGTGGCTTCTGAAGCCTaGCTCTGGTCACTGTTGCCATCCTCTTCTCCATCC +
Preference number: 6 (lower is better)
Translates to: FETLRPPVASEA*LWSLLPSSSPS
Trigger: GGATGGAGAAGAGGATGGCAACAGTGACCAGAGTCAGGCTTCAGAAGCCACAGGTGGTCGAAGGGTCTCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CCA 72 bp TTTTCTGCCTTTGGTGTTTCTGAGACCTCCAAGTTCTaGGTCACGGTCAACAGGTCCTGCATCACGGAGCCG +
Preference number: 6 (lower is better)
Translates to: FSAFGVSETSKF*VTVNRSCITEP
Trigger: CGGCTCCGTGATGCAGGACCTGTTGACCGTGACCCAGAACTTGGAGGTCTCAGAAACACCAAAGGCAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS CCA 72 bp AGGAGCCTCAGTCTCCGGAGCCTTTGTATTGACCTTTaGATCGGTACCACAGCTGACCTTTTTGGTCGGGGT +
Preference number: 6 (lower is better)
Translates to: RSLSLRSLCIDL*IGTTADLFGRG
Trigger: ACCCCGACCAAAAAGGTCAGCTGTGGTACCGATCCAAAGGTCAATACAAAGGCTCCGGAGACTGAGGCTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 90 bp GCCTGCAGGTCAGACTTCTGCGTCTTGGTGTCAGCTGCTGGACTCTaGTTTTCAGTTGCCAGAACTTGGGTCTCACTCAGCTGTGTGGTA +
Preference number: 6 (lower is better)
Translates to: ACRSDFCVLVSAAGL*FSVARTWVSLSCVV
Trigger: TACCACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS TCA 72 bp CATCCGGGTGTTTCCCCTTTTGGGTATTCTTGGCTTTaGCCTTGGGCCGAGTATCCTGGTTCTCCTGAACCT +
Preference number: 6 (lower is better)
Translates to: HPGVSPFGYSWL*PWAEYPGSPEP
Trigger: AGGTTCAGGAGAACCAGGATACTCGGCCCAAGGTCAAAGCCAAGAATACCCAAAAGGGGAAACACCCGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000143843.8
ENSMUST00000147152.3
CDS TCA 72 bp GCAGCCTTCAAATCTGCTTCCATTGCCTCTCGGTACTaGGCTGCCCATTCCTTGGGATCCTTCTTTTGCACC +
Preference number: 6 (lower is better)
Translates to: AAFKSASIASRY*AAHSLGSFFCT
Trigger: GGTGCAAAAGAAGGATCCCAAGGAATGGGCAGCTCAGTACCGAGAGGCAATGGAAGCAGATTTGAAGGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 72 bp CGTCTTGGTGTCAGCTGCTGGACTCTTGTTTTCAGTTaGCAGAACTTGGGTCTCACTCAGCTGTGTGGTAGG +
Preference number: 6 (lower is better)
Translates to: RLGVSCWTLVFS*QNLGLTQLCGR
Trigger: CCTACCACACAGCTGAGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 90 bp TTGAGACCTCTGTCGCCTTTGGGTTCCCAGAGGCTTTTGGAGCCTTaGCAGCCTCTGAAACCTCTGGTGCCTTTTCTGCCTTTGGTGTTT +
Preference number: 6 (lower is better)
Translates to: LRPLSPLGSQRLLEP*QPLKPLVPFLPLVF
Trigger: AAACACCAAAGGCAGAAAAGGCACCAGAGGTTTCAGAGGCTGCAAAGGCTCCAAAAGCCTCTGGGAACCCAAAGGCGACAGAGGTCTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 90 bp GGGGTTGTAGGCATTGTCATAGCCTGCAGGTCAGACTTCTGCGTCTaGGTGTCAGCTGCTGGACTCTTGTTTTCAGTTGCCAGAACTTGG +
Preference number: 6 (lower is better)
Translates to: GVVGIVIACRSDFCV*VSAAGLLFSVARTW
Trigger: CCAAGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCAGGCTATGACAATGCCTACAACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 90 bp GGAGCCTTTGTATTGACCTTTGGATCGGTACCACAGCTGACCTTTTaGGTCGGGGTTGTAGGCATTGTCATAGCCTGCAGGTCAGACTTC +
Preference number: 6 (lower is better)
Translates to: GAFVLTFGSVPQLTF*VGVVGIVIACRSDF
Trigger: GAAGTCTGACCTGCAGGCTATGACAATGCCTACAACCCCGACCAAAAAGGTCAGCTGTGGTACCGATCCAAAGGTCAATACAAAGGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 72 bp TCAGACTTCTGCGTCTTGGTGTCAGCTGCTGGACTCTaGTTTTCAGTTGCCAGAACTTGGGTCTCACTCAGC +
Preference number: 6 (lower is better)
Translates to: SDFCVLVSAAGL*FSVARTWVSLS
Trigger: GCTGAGTGAGACCCAAGTTCTGGCAACTGAAAACAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CAA 72 bp GTATTGACCTTTGGATCGGTACCACAGCTGACCTTTTaGGTCGGGGTTGTAGGCATTGTCATAGCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: VLTFGSVPQLTF*VGVVGIVIACR
Trigger: CCTGCAGGCTATGACAATGCCTACAACCCCGACCAAAAAGGTCAGCTGTGGTACCGATCCAAAGGTCAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS TCA 72 bp CTCATCAGTAATGAGTTTCTTCACATCTCCAAAGAGTaGGTGATGAATCCCAGGGCGCAGCCCCAACTTGCG +
Preference number: 6 (lower is better)
Translates to: LISNEFLHISKE*VMNPRAQPQLA
Trigger: CGCAAGTTGGGGCTGCGCCCTGGGATTCATCACTCACTCTTTGGAGATGTGAAGAAACTCATTACTGATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
CDS GCA 72 bp GTTGTAGGCATTGTCATAGCCTGCAGGTCAGACTTCTaGGTCTTGGTGTCAGCTGCTGGACTCTTGTTTTCA +
Preference number: 6 (lower is better)
Translates to: VVGIVIACRSDF*VLVSAAGLLFS
Trigger: TGAAAACAAGAGTCCAGCAGCTGACACCAAGACGCAGAAGTCTGACCTGCAGGCTATGACAATGCCTACAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8
ENSMUST00000129768.8
ENSMUST00000131241.2
ENSMUST00000143843.8
CDS CCA 72 bp TTCAGCATATCTGAGCGTCTGATGGGAATCTTTGTCTaGTCTTTAGCCAACAGGTACTTCACCAAGTCATTT +
Preference number: 6 (lower is better)
Translates to: FSISERLMGIFV*SLANRYFTKSF
Trigger: AAATGACTTGGTGAAGTACCTGTTGGCTAAAGACCAGACAAAGATTCCCATCAGACGCTCAGATATGCTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026302.13
ENSMUST00000112697.10
ENSMUST00000112699.9
ENSMUST00000112700.8