Pregenerated sensors for MAGEC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045330

Ensembl transcript IDs: ENSMUST00000051414.2, ENSMUST00000178085.8

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	ATTTTGACTGCTCTATTCAAAGTTAGAGTGAATCCATaGCAAAAGGGATCCCTCACACTGGATAAGAGAAAC	+
Preference number: 3 (lower is better) Translates to: ILTALFKVRVNP*QKGSLTLDKRN Trigger: GTTTCTCTTATCCAGTGTGAGGGATCCCTTTTGGCATGGATTCACTCTAACTTTGAATAGAGCAGTCAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS CCA 90 bp	GTCATCTCCAAGCATTTAGAAGCTTCGATGAAAATGACAGGAAAGTaGTTCTCATATTCCTTAGTGACAACCTCATGCATCTCAGTTAAT	+
Preference number: 5 (lower is better) Translates to: VISKHLEASMKMTGK*FSYSLVTTSCISVN Trigger: ATTAACTGAGATGCATGAGGTTGTCACTAAGGAATATGAGAACCACTTTCCTGTCATTTTCATCGAAGCTTCTAAATGCTTGGAGATGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS CCA 72 bp	TCCCTCTCTCTCATCTTTCTCGGCTGTGGGAAGTACTaGGAACACCACATCATCGTCATCAGTTTCCGTTGG	+
Preference number: 6 (lower is better) Translates to: SLSLIFLGCGKY*EHHIIVISFRW Trigger: CCAACGGAAACTGATGACGATGATGTGGTGTTCCCAGTACTTCCCACAGCCGAGAAAGATGAGAGAGAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS CCA 72 bp	AACACCACATCATCGTCATCAGTTTCCGTTGGATTCTaGAAGTTGACACCTTCTTCCAGACTGAGGCGTGGG	+
Preference number: 6 (lower is better) Translates to: NTTSSSSVSVGF*KLTPSSRLRRG Trigger: CCCACGCCTCAGTCTGGAAGAAGGTGTCAACTTCCAGAATCCAACGGAAACTGATGACGATGATGTGGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS GCA 72 bp	CCTTCTCGACGTTATCTTCCTCTGTCTCCTGCTTATTaGCATCTTCATCTTCCTTTAGGACCTCCTCCTCTC	+
Preference number: 6 (lower is better) Translates to: PSRRYLPLSPAY*HLHLPLGPPPL Trigger: GAGAGGAGGAGGTCCTAAAGGAAGATGAAGATGGCAATAAGCAGGAGACAGAGGAAGATAACGTCGAGAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS TCA 72 bp	GCTGTCACTCAGCGTATCCTCATAGGTAAGGTTCAGTaGGTTGACCAAGACATAAGCACTGCTTACCAGATC	+
Preference number: 6 (lower is better) Translates to: AVTQRILIGKVQ*VDQDISTAYQI Trigger: GATCTGGTAAGCAGTGCTTATGTCTTGGTCAACTCACTGAACCTTACCTATGAGGATACGCTGAGTGACAGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS GCA 72 bp	TCGTCTTCCTTCTCGACGTTATCTTCCTCTGTCTCCTaGTTATTGCCATCTTCATCTTCCTTTAGGACCTCC	+
Preference number: 6 (lower is better) Translates to: SSSFSTLSSSVS*LLPSSSSFRTS Trigger: GGAGGTCCTAAAGGAAGATGAAGATGGCAATAAGCAGGAGACAGAGGAAGATAACGTCGAGAAGGAAGACGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8
CDS CCA 72 bp	TACTGGGAACACCACATCATCGTCATCAGTTTCCGTTaGATTCTGGAAGTTGACACCTTCTTCCAGACTGAG	+
Preference number: 6 (lower is better) Translates to: YWEHHIIVISFR*ILEVDTFFQTE Trigger: CTCAGTCTGGAAGAAGGTGTCAACTTCCAGAATCCAACGGAAACTGATGACGATGATGTGGTGTTCCCAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051414.2 ENSMUST00000178085.8

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