Pregenerated sensors for MAGEB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074881Ensembl transcript IDs: ENSMUST00000104936.4
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATATAACAGGCCAAGAATaGATGCATGCTGGTTCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: CMISHCHDNPFSNAMLHNITGQE*MHAGSG Trigger: ACCAGAACCAGCATGCATCCATTCTTGGCCTGTTAT...ATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| 3UTR GCA 72 bp | ACTTCACTGTTGTTTCACCACTGTATGATATCACATTaGCATGACAATCCCTTCTCCAATGCAATGTTACAC | + |
|
Preference number: 3 (lower is better) Translates to: TSLLFHHCMISH*HDNPFSNAMLH Trigger: GTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTGGTGAAACAACAGTGAAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR TCA 90 bp | CACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACGGGTTTTTCACACCCTaGGGAGCAGAACCACCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: HCMISHCHDNPFSNAMLHGFFTP*GAEPPG Trigger: CCCTGGTGGTTCTGCTCCTCAGGGTGTGAAAAACCC...GTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR TCA 90 bp | AAAATAGCCTCCATTCTACTAATGTATAACAGGCCAAGAATGGATGCATGCTGGTTGAACCTCCCTGCGTaGCTGCTGTCGTTTAGCACG | + |
|
Preference number: 4 (lower is better) Translates to: KIASILLMYNRPRMDACWLNLPA*LLSFST Trigger: CGTGCTAAACGACAGCAGTCACGCAGGGAGGTTCAA...CCAGCATGCATCCATTCTTGGCCTGTTATACATTAGTAGAATGGAGGCTATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | CACCACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTAAGACCCTGCTTCCTCTaGAGTGGGCTGAACTACTTG | + |
|
Preference number: 4 (lower is better) Translates to: HHCMISHCHDNPFSNAMLRPCFL*SGLNYL Trigger: CAAGTAGTTCAGCCCACTGCAGAGGAAGCAGGGTCT...TAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | CACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACTCTTGGCACCCCTCCTaGCTGATCTCTAAGAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: HCMISHCHDNPFSNAMLHSWHPS*LISKSQ Trigger: TTGGCTCTTAGAGATCAGGCAGGAGGGGTGCCAAGA...GTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | AAAATAGCCTCCATTCTACTAATGTATAACAGGCCAAGAATGGATGCATGCTGGCTATACCAGAGCCTGTaGAGGATACACCTGCACCAA | + |
|
Preference number: 4 (lower is better) Translates to: KIASILLMYNRPRMDACWLYQSL*RIHLHQ Trigger: TTGGTGCAGGTGTATCCTGCACAGGCTCTGGTATAG...CCAGCATGCATCCATTCTTGGCCTGTTATACATTAGTAGAATGGAGGCTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR CCA 90 bp | AAAATAGCCTCCATTCTACTAATGTATAACAGGCCAAGAATGGATGCATGCTGGCTGCTTCCTCTGCAGTaGGCTGAACTACTTGAACCT | + |
|
Preference number: 4 (lower is better) Translates to: KIASILLMYNRPRMDACWLLPLQ*AELLEP Trigger: AGGTTCAAGTAGTTCAGCCCACTGCAGAGGAAGCAG...CCAGCATGCATCCATTCTTGGCCTGTTATACATTAGTAGAATGGAGGCTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | CACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACTATACCCCCACTCCATaGAGAAATTGCCAGACCTCT | + |
|
Preference number: 4 (lower is better) Translates to: HCMISHCHDNPFSNAMLHYTPTP*RNCQTS Trigger: AGAGGTCTGGCAATTTCTGCATGGAGTGGGGGTATA...GTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR CCA 90 bp | AAAATAGCCTCCATTCTACTAATGTATAACAGGCCAAGAATGGATGCATGCTGGTCAAACTTCCCTCAGTaGAAAGACCCAGTTTGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: KIASILLMYNRPRMDACWSNFPQ*KDPVCP Trigger: TGGGCAAACTGGGTCTTTCCACTGAGGGAAGTTTGA...CCAGCATGCATCCATTCTTGGCCTGTTATACATTAGTAGAATGGAGGCTATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR CCA 90 bp | TGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATTTGAACTCTACTTCTTaGCACCCCTCCTGCCTGATC | + |
|
Preference number: 4 (lower is better) Translates to: CMISHCHDNPFSNAMLHNLNSTS*HPSCLI Trigger: GATCAGGCAGGAGGGGTGCCAAGAAGTAGAGTTCAA...ATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | TGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATAAGTCCCTGCCTGGGTaGCATCTGAACTTTTTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: CMISHCHDNPFSNAMLHNKSLPG*HLNFLY Trigger: ATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTT...ATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | ATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATGTTTTAACTCCATGCAGAAATTaGCAGACCTCTTGCTCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: ISHCHDNPFSNAMLHNVLTPCRN*QTSCSV Trigger: CACTGAGCAAGAGGTCTGGCAATTTCTGCATGGAGT...TAAAACATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | TGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATTCGCCAAAGATCAAGTaGTTCTTCCCAGCATATACC | + |
|
Preference number: 4 (lower is better) Translates to: CMISHCHDNPFSNAMLHNSPKIK*FFPAYT Trigger: GGTATATGCTGGGAAGAAGCACTTGATCTTTGGCGA...ATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | CACCACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACTTCTTGTTAACTACTaGCAGCATTTCACTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: HHCMISHCHDNPFSNAMLLLVNY*QHFTSC Trigger: ACAAGAAGTGAAATGCTGGCAGTAGTTAACAAGAAG...TAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTGGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR GCA 90 bp | TGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATGCAAATAGGAATGAGTaGTGGGATCAATTTCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: CMISHCHDNPFSNAMLHNANRNE*WDQFPS Trigger: TGAAGGAAATTGATCCCAGCACTCATTCCTATTTGC...ATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 90 bp | AGTAGCATTTCTACCACCTATACCAGAGCCTGTGCAGGATACACCTaGACCAAAAGATCCAGGGTTTTTCACACCCTGAGGAGCAGAACC | + |
|
Preference number: 5 (lower is better) Translates to: SSISTTYTRACAGYT*TKRSRVFHTLRSRT Trigger: GGTTCTGCTCCTCAGGGTGTGAAAAACCCTGGATCTTTTGGTGCAGGTGTATCCTGCACAGGCTCTGGTATAGGTGGTAGAAATGCTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 90 bp | TGCACTACATCTCTTATAAACTCCTCAGGCTCGCCAAAGATCAAGTaGTTCTTCCCAGCATATACCCCCACTCCATGCAGAAATTGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: CTTSLINSSGSPKIK*FFPAYTPTPCRNCQ Trigger: CTGGCAATTTCTGCATGGAGTGGGGGTATATGCTGGGAAGAAGCACTTGATCTTTGGCGAGCCTGAGGAGTTTATAAGAGATGTAGTGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS TCA 90 bp | ATCTTTCAGTGTGTGCTGAATGGAAGTCCCTGCCTGGGTGCCATCTaGACTTTTTGTATCAGGCAGGACAGTAGCATTTCTACCACCTAT | + |
|
Preference number: 5 (lower is better) Translates to: IFQCVLNGSPCLGAI*TFCIRQDSSISTTY Trigger: ATAGGTGGTAGAAATGCTACTGTCCTGCCTGATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTTCCATTCAGCACACACTGAAAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 90 bp | CCTCAGTGGAAAGACCCAGTTTGCCCACCAGCAAATAGGAATGAGTaGTGGGATCAATTTCCTTCAACTCAAGACCAAAGACCAATTCTA | + |
|
Preference number: 5 (lower is better) Translates to: PQWKDPVCPPANRNE*WDQFPSTQDQRPIL Trigger: TAGAATTGGTCTTTGGTCTTGAGTTGAAGGAAATTGATCCCAGCACTCATTCCTATTTGCTGGTGGGCAAACTGGGTCTTTCCACTGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR CAA 90 bp | AAAATAGCCTCCATTCTACTAATGTATAACAGGCCAAGAATGGATGCATGCTGGCACATTAGAGGACTTTaGGGATGGGGCCTTGGAATG | + |
|
Preference number: 5 (lower is better) Translates to: KIASILLMYNRPRMDACWHIRGL*GWGLGM Trigger: CATTCCAAGGCCCCATCCCAAAAGTCCTCTAATGTG...CCAGCATGCATCCATTCTTGGCCTGTTATACATTAGTAGAATGGAGGCTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR CAA 90 bp | CACCACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTAATGAACACCCTTGCCTaGAACTCTACTTCTTGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: HHCMISHCHDNPFSNAMLMNTLA*NSTSWH Trigger: GTGCCAAGAAGTAGAGTTCAAGGCAAGGGTGTTCAT...TAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS-3UTR CAA 90 bp | CACCACTGTATGATATCACATTGCCATGACAATCCCTTCTCCAATGCAATGTTACTAGGGACTGTGCCATaGACTTTAGCTAAAACTTTC | + |
|
Preference number: 5 (lower is better) Translates to: HHCMISHCHDNPFSNAMLLGTVP*TLAKTF Trigger: GAAAGTTTTAGCTAAAGTCAATGGCACAGTCCCTAG...TAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS TCA 72 bp | CTCTGCAGTGGGCTGAACTACTTGAACCTCCCTGCGTaGCTGCTGTCGTTTAGCACGGGAGCGGCTCTTACT | + |
|
Preference number: 6 (lower is better) Translates to: LCSGLNYLNLPA*LLSFSTGAALT Trigger: AGTAAGAGCCGCTCCCGTGCTAAACGACAGCAGTCACGCAGGGAGGTTCAAGTAGTTCAGCCCACTGCAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 72 bp | GCTGGACCCAGCACTCAGGTCAACAGGAGAAGACCCTaGTTCCTCTGCAGTGGGCTGAACTACTTGAACCTC | + |
|
Preference number: 6 (lower is better) Translates to: AGPSTQVNRRRP*FLCSGLNYLNL Trigger: GAGGTTCAAGTAGTTCAGCCCACTGCAGAGGAAGCAGGGTCTTCTCCTGTTGACCTGAGTGCTGGGTCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS CCA 72 bp | TTTTCACACCCTGAGGAGCAGAACCACCAGGGAAGCTaGACCCAGCACTCAGGTCAACAGGAGAAGACCCTG | + |
|
Preference number: 6 (lower is better) Translates to: FSHPEEQNHQGS*TQHSGQQEKTL Trigger: CAGGGTCTTCTCCTGTTGACCTGAGTGCTGGGTCCAGCTTCCCTGGTGGTTCTGCTCCTCAGGGTGTGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 72 bp | TCTACCACCTATACCAGAGCCTGTGCAGGATACACCTaGACCAAAAGATCCAGGGTTTTTCACACCCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: STTYTRACAGYT*TKRSRVFHTLR Trigger: CCTCAGGGTGTGAAAAACCCTGGATCTTTTGGTGCAGGTGTATCCTGCACAGGCTCTGGTATAGGTGGTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 72 bp | ACCCTTGCCTTGAACTCTACTTCTTGGCACCCCTCCTaGCTGATCTCTAAGAGCCAACTGGTAGAGATTAGG | + |
|
Preference number: 6 (lower is better) Translates to: TLALNSTSWHPS*LISKSQLVEIR Trigger: CCTAATCTCTACCAGTTGGCTCTTAGAGATCAGGCAGGAGGGGTGCCAAGAAGTAGAGTTCAAGGCAAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS CCA 72 bp | CTTGGAATGAACACCCTTGCCTTGAACTCTACTTCTTaGCACCCCTCCTGCCTGATCTCTAAGAGCCAACTG | + |
|
Preference number: 6 (lower is better) Translates to: LGMNTLALNSTS*HPSCLISKSQL Trigger: CAGTTGGCTCTTAGAGATCAGGCAGGAGGGGTGCCAAGAAGTAGAGTTCAAGGCAAGGGTGTTCATTCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS TCA 72 bp | TGTGTGCTGAATGGAAGTCCCTGCCTGGGTGCCATCTaGACTTTTTGTATCAGGCAGGACAGTAGCATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: CVLNGSPCLGAI*TFCIRQDSSIS Trigger: AGAAATGCTACTGTCCTGCCTGATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTTCCATTCAGCACACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 72 bp | TCTCTTATAAACTCCTCAGGCTCGCCAAAGATCAAGTaGTTCTTCCCAGCATATACCCCCACTCCATGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: SLINSSGSPKIK*FFPAYTPTPCR Trigger: TCTGCATGGAGTGGGGGTATATGCTGGGAAGAAGCACTTGATCTTTGGCGAGCCTGAGGAGTTTATAAGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 72 bp | TACTACTCAAACTTCCCTCAGTGGAAAGACCCAGTTTaGCCACCAGCAAATAGGAATGAGTGCTGGGATCAA | + |
|
Preference number: 6 (lower is better) Translates to: YYSNFPQWKDPV*PPANRNECWDQ Trigger: TTGATCCCAGCACTCATTCCTATTTGCTGGTGGGCAAACTGGGTCTTTCCACTGAGGGAAGTTTGAGTAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||
| CDS GCA 72 bp | CTCAGGGAATTGCTCCTTATACTTCTTGTTAACTACTaGCAGCATTTCACTTCTTGTAACTGCTTCTTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LRELLLILLVNY*QHFTSCNCFFH Trigger: ATGAAAGAAGCAGTTACAAGAAGTGAAATGCTGGCAGTAGTTAACAAGAAGTATAAGGAGCAATTCCCTGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104936.4 |
||