RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MAGEB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073069

Ensembl transcript IDs: ENSMUST00000101397.2, ENSMUST00000201779.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATGTTTTAGTAAAAACACAGGCCAAGAATGGATaGATGTTGGTTCTGGTAGGC +
Preference number: 2 (lower is better)
Translates to: CHDNPFSNAMLHNVLVKTQAKNG*MLVLVG
Trigger: GCCTACCAGAACCAACATGCATCCATTCTTGGCCTG...TGTTTTTACTAAAACATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201779.2
3UTR TCA 72 bp ACTGTTGTTTCACCACTGTATGATATCACATTGCCATaGCAATCCCTTCTCCAATGCAATGTTACACAATGT +
Preference number: 3 (lower is better)
Translates to: TVVSPLYDITLP*QSLLQCNVTQC
Trigger: ACATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCAATGTGATATCATACAGTGGTGAAACAACAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201779.2
3UTR-3UTR CAA 90 bp TGCCATGACAATCCCTTCTCCAATGCAATGTTACACAATGTTTTAGTAAAAACAAAGAATGGATGCATGTaGGTTCTGGTAGGCTATGAA +
Preference number: 3 (lower is better)
Translates to: CHDNPFSNAMLHNVLVKTKNGCM*VLVGYE
Trigger: TTCATAGCCTACCAGAACCAACATGCATCCATTCTT...TGTTTTTACTAAAACATTGTGTAACATTGCATTGGAGAAGGGATTGTCATGGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201779.2
CDS-3UTR GCA 90 bp AAAACAAGTCCTAATCTGACAAGTGACAGTTACCTCTTTATGCAGTTAACAAGATGGAATGAACACCCTTaGCTTGAACTCTCCTTCTTG +
Preference number: 4 (lower is better)
Translates to: KTSPNLTSDSYLFMQLTRWNEHP*LELSFL
Trigger: CAAGAAGGAGAGTTCAAGGCAAGGGTGTTCATTCCA...TCTTGTTAACTGCATAAAGAGGTAACTGTCACTTGTCAGATTAGGACTTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201779.2
CDS-3UTR GCA 90 bp AAAACAAGTCCTAATCTGACAAGTGACAGTTACCTCTTTATGCAGTTAACAAGACTTCTTGTTAACTACTaGCAGCATTTCACTCCTTGT +
Preference number: 4 (lower is better)
Translates to: KTSPNLTSDSYLFMQLTRLLVNY*QHFTPC
Trigger: ACAAGGAGTGAAATGCTGGCAGTAGTTAACAAGAAG...TCTTGTTAACTGCATAAAGAGGTAACTGTCACTTGTCAGATTAGGACTTGTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201779.2
CDS GCA 72 bp CTTCCTCTGCAGTGGGCTGAACTACTGGAACCTCCCTaGGTGACTGCTGTCGTTTTGCACGGGAGCGGGTCT +
Preference number: 6 (lower is better)
Translates to: LPLQWAELLEPP*VTAVVLHGSGS
Trigger: AGACCCGCTCCCGTGCAAAACGACAGCAGTCACGCAGGGAGGTTCCAGTAGTTCAGCCCACTGCAGAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101397.2
ENSMUST00000201779.2
CDS GCA 72 bp ACCCTTGCCTTGAACTCTCCTTCTTGGCACCCCTCCTaGCTGATCTCTAAGAGCCAACTGGTAGAGATTAGG +
Preference number: 6 (lower is better)
Translates to: TLALNSPSWHPS*LISKSQLVEIR
Trigger: CCTAATCTCTACCAGTTGGCTCTTAGAGATCAGGCAGGAGGGGTGCCAAGAAGGAGAGTTCAAGGCAAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101397.2
ENSMUST00000201779.2
CDS CAA 90 bp GTGTGTGCTGAATGGAAGTCCCTGCCTGGGTGCCATCTGAACTTTTaGTATCAGGCAGGACAGCAGCATTTCTACCACCTATACCAGAGC +
Preference number: 6 (lower is better)
Translates to: VCAEWKSLPGCHLNF*YQAGQQHFYHLYQS
Trigger: GCTCTGGTATAGGTGGTAGAAATGCTGCTGTCCTGCCTGATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTTCCATTCAGCACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101397.2
ENSMUST00000201779.2
CDS GCA 72 bp GGACAGCAGCATTTCTACCACCTATACCAGAGCCTGTaGAGGATACACCTGCACCAAAAGATCCAGGGGTTT +
Preference number: 6 (lower is better)
Translates to: GQQHFYHLYQSL*RIHLHQKIQGF
Trigger: AAACCCCTGGATCTTTTGGTGCAGGTGTATCCTGCACAGGCTCTGGTATAGGTGGTAGAAATGCTGCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101397.2
ENSMUST00000201779.2
CDS GCA 72 bp TACTACTCAAACTTCCCTCAGTGGAAAGACCCAGTTTaGCTACCAGCAAATAGGAATGAGTGCTGGGATCAA +
Preference number: 6 (lower is better)
Translates to: YYSNFPQWKDPV*LPANRNECWDQ
Trigger: TTGATCCCAGCACTCATTCCTATTTGCTGGTAGGCAAACTGGGTCTTTCCACTGAGGGAAGTTTGAGTAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101397.2
ENSMUST00000201779.2
CDS GCA 72 bp CTCAGGGAATTGCTCCTTATACTTCTTGTTAACTACTaGCAGCATTTCACTCCTTGTAACTGCTTCTTTCAT +
Preference number: 6 (lower is better)
Translates to: LRELLLILLVNY*QHFTPCNCFFH
Trigger: ATGAAAGAAGCAGTTACAAGGAGTGAAATGCTGGCAGTAGTTAACAAGAAGTATAAGGAGCAATTCCCTGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101397.2
ENSMUST00000201779.2