Pregenerated sensors for MAGEB11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091497

Ensembl transcript IDs: ENSMUST00000172155.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTTGGGAAGTTTCAGCTTACTGATAAGATCATACACTCGCCGGCTTaGTTCGACTTCCCTCAGTTCAACTGCAAAGACATCTGCAAGTCT	+
Preference number: 5 (lower is better) Translates to: VGKFQLTDKIIHSPA*FDFPQFNCKDICKS Trigger: AGACTTGCAGATGTCTTTGCAGTTGAACTGAGGGAAGTCGAATCAAGCCGGCGAGTGTATGATCTTATCAGTAAGCTGAAACTTCCCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS TCA 90 bp	TTAAACTTCAACATTGGAGAAAGCAAGCCGTGGACACATCACAAATaGAAATGCCCTATCTTTGAGATGAATGGCAGAGCTGACATTATG	+
Preference number: 5 (lower is better) Translates to: LNFNIGESKPWTHHK*KCPIFEMNGRADIM Trigger: CATAATGTCAGCTCTGCCATTCATCTCAAAGATAGGGCATTTTCATTTGTGATGTGTCCACGGCTTGCTTTCTCCAATGTTGAAGTTTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS CAA 90 bp	AGGAAACCAGTCTTTGGGAAGCCCTGGCCAGCACGAACCCTCCCATaGTTGGGAAGTTTCAGCTTACTGATAAGATCATACACTCGCCGG	+
Preference number: 6 (lower is better) Translates to: RKPVFGKPWPARTLP*LGSFSLLIRSYTRR Trigger: CCGGCGAGTGTATGATCTTATCAGTAAGCTGAAACTTCCCAACAATGGGAGGGTTCGTGCTGGCCAGGGCTTCCCAAAGACTGGTTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS TCA 72 bp	CTGCAAAGACATCTGCAAGTCTTTCAGCAGCTTTCCTaGGGATCTCGGGGAAGTCATCCATTTCCTCCTCAT	+
Preference number: 6 (lower is better) Translates to: LQRHLQVFQQLS*GSRGSHPFPPH Trigger: ATGAGGAGGAAATGGATGACTTCCCCGAGATCCTCAGGAAAGCTGCTGAAAGACTTGCAGATGTCTTTGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS TCA 72 bp	TTTCAGCTTACTGATAAGATCATACACTCGCCGGCTTaGTTCGACTTCCCTCAGTTCAACTGCAAAGACATC	+
Preference number: 6 (lower is better) Translates to: FQLTDKIIHSPA*FDFPQFNCKDI Trigger: GATGTCTTTGCAGTTGAACTGAGGGAAGTCGAATCAAGCCGGCGAGTGTATGATCTTATCAGTAAGCTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS TCA 72 bp	AACATTGGAGAAAGCAAGCCGTGGACACATCACAAATaGAAATGCCCTATCTTTGAGATGAATGGCAGAGCT	+
Preference number: 6 (lower is better) Translates to: NIGESKPWTHHK*KCPIFEMNGRA Trigger: AGCTCTGCCATTCATCTCAAAGATAGGGCATTTTCATTTGTGATGTGTCCACGGCTTGCTTTCTCCAATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS GCA 72 bp	TCGGGGAAGTCATCCATTTCCTCCTCATCAATAACCTaGATCATATCTTCTATTGTAGTAAGCTGCTTTGTT	+
Preference number: 6 (lower is better) Translates to: SGKSSISSSSIT*IISSIVVSCFV Trigger: AACAAAGCAGCTTACTACAATAGAAGATATGATGCAGGTTATTGATGAGGAGGAAATGGATGACTTCCCCGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172155.2
CDS TCA 72 bp	GTCTTCAGCATCCTCAAGATCAATAAAACTGTCATCTaGTATCGAAAAGAGATCAACAGTTACTGTGGAAAC	+
Preference number: 6 (lower is better) Translates to: VFSILKINKTVI*YRKEINSYCGN Trigger: GTTTCCACAGTAACTGTTGATCTCTTTTCGATATCAGATGACAGTTTTATTGATCTTGAGGATGCTGAAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172155.2

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