Pregenerated sensors for MAGEB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062162Ensembl transcript IDs: ENSMUST00000072269.2, ENSMUST00000099471.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCACTCTGGTCAACAGGAGAAGACCCTGCTTCCTCTGCAGTGGGCTaGACTACTGGAACCTCCCTGCGTGACTGCTGTCGTTTTGCACGG | + |
|
Preference number: 5 (lower is better) Translates to: ALWSTGEDPASSAVG*TTGTSLRDCCRFAR Trigger: CCGTGCAAAACGACAGCAGTCACGCAGGGAGGTTCCAGTAGTTCAGCCCACTGCAGAGGAAGCAGGGTCTTCTCCTGTTGACCAGAGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS CCA 90 bp | ACCCAGCACTCTGGTCAACAGGAGAAGACCCTGCTTCCTCTGCAGTaGGCTGAACTACTGGAACCTCCCTGCGTGACTGCTGTCGTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: TQHSGQQEKTLLPLQ*AELLEPPCVTAVVL Trigger: CAAAACGACAGCAGTCACGCAGGGAGGTTCCAGTAGTTCAGCCCACTGCAGAGGAAGCAGGGTCTTCTCCTGTTGACCAGAGTGCTGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS GCA 90 bp | AAGACCCTGCTTCCTCTGCAGTGGGCTGAACTACTGGAACCTCCCTaGGTGACTGCTGTCGTTTTGCACGGGAGCGGGTCTTACTCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: KTLLPLQWAELLEPP*VTAVVLHGSGSYSF Trigger: AAAAGAGTAAGACCCGCTCCCGTGCAAAACGACAGCAGTCACGCAGGGAGGTTCCAGTAGTTCAGCCCACTGCAGAGGAAGCAGGGTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS GCA 90 bp | CGCACTACATCTCTTATAAACTCCTCAGGCTCGCCAAAGATCAAGTaGTTCTTCCCAGCATATACCCCCACTCCATGCAGAAATTGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: RTTSLINSSGSPKIK*FFPAYTPTPCRNCQ Trigger: CTGGCAATTTCTGCATGGAGTGGGGGTATATGCTGGGAAGAAGCACTTGATCTTTGGCGAGCCTGAGGAGTTTATAAGAGATGTAGTGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS TCA 90 bp | ATCTTTCAGTGTGTGCTGAATGGAAGTCCCTGCCTGGGTGCCATCTaGACTTTTTGTATCAGGCAGGACAGCAGCATTTCTACCACCTAT | + |
|
Preference number: 5 (lower is better) Translates to: IFQCVLNGSPCLGAI*TFCIRQDSSISTTY Trigger: ATAGGTGGTAGAAATGCTGCTGTCCTGCCTGATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTTCCATTCAGCACACACTGAAAGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS CCA 72 bp | GGAGCAGAACCACCAGGGAAGCTGGACCCAGCACTCTaGTCAACAGGAGAAGACCCTGCTTCCTCTGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: GAEPPGKLDPAL*STGEDPASSAV Trigger: CACTGCAGAGGAAGCAGGGTCTTCTCCTGTTGACCAGAGTGCTGGGTCCAGCTTCCCTGGTGGTTCTGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS CCA 72 bp | CTTGGAATGAACACCCTTGCCTTGAACTCTCCTTCTTaGCACCCCTCCTGCCTGATCTCTAAGAGCCAACTG | + |
|
Preference number: 6 (lower is better) Translates to: LGMNTLALNSPS*HPSCLISKSQL Trigger: CAGTTGGCTCTTAGAGATCAGGCAGGAGGGGTGCCAAGAAGGAGAGTTCAAGGCAAGGGTGTTCATTCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS TCA 72 bp | TGTGTGCTGAATGGAAGTCCCTGCCTGGGTGCCATCTaGACTTTTTGTATCAGGCAGGACAGCAGCATTTCT | + |
|
Preference number: 6 (lower is better) Translates to: CVLNGSPCLGAI*TFCIRQDSSIS Trigger: AGAAATGCTGCTGTCCTGCCTGATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTTCCATTCAGCACACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS CAA 72 bp | GAATGGAAGTCCCTGCCTGGGTGCCATCTGAACTTTTaGTATCAGGCAGGACAGCAGCATTTCTACCACCTA | + |
|
Preference number: 6 (lower is better) Translates to: EWKSLPGCHLNF*YQAGQQHFYHL Trigger: TAGGTGGTAGAAATGCTGCTGTCCTGCCTGATACAAAAAGTTCAGATGGCACCCAGGCAGGGACTTCCATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||
| CDS CCA 72 bp | GACCCAGTTTGCCTACCAGCAAATAGGAATGAGTGCTaGGATCAATTTCCTTCAACTCAAGACCAAAGACTA | + |
|
Preference number: 6 (lower is better) Translates to: DPVCLPANRNEC*DQFPSTQDQRL Trigger: TAGTCTTTGGTCTTGAGTTGAAGGAAATTGATCCCAGCACTCATTCCTATTTGCTGGTAGGCAAACTGGGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072269.2 ENSMUST00000099471.3 |
||