Pregenerated sensors for MAGEA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031179Ensembl transcript IDs: ENSMUST00000033522.15
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTaGGGGTCTACCACTTATTTTACTGTTCTGCCTGACCATAAATTG | + |
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Preference number: 1 (lower is better) Translates to: SKKGMGYTLFPIPLI*GSTTYFTVLPDHKL Trigger: CAATTTATGGTCAGGCAGAACAGTAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| 3UTR CCA 72 bp | GGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTaGGGGTCTACCACTTATTTTACTGTTCTGCCTGAC | + |
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Preference number: 3 (lower is better) Translates to: GMGYTLFPIPLI*GSTTYFTVLPD Trigger: GTCAGGCAGAACAGTAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| 3UTR CCA 72 bp | ATCCTAAGTCACCCAAACAGAACAGTAAGAAAGGAATaGGTTACACTCTCTTTCCAATACCTCTCATTTGGG | + |
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Preference number: 3 (lower is better) Translates to: ILSHPNRTVRKE*VTLSFQYLSFG Trigger: CCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTGTTTGGGTGACTTAGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR GCA 90 bp | TGGGGGTCTACCACTTATTTTACTGTTCTGCCTGACCATAAATTGCTAGTGCACGGCTTCCACCTCCTCTaGCTCAGCTATAGGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: WGSTTYFTVLPDHKLLVHGFHLL*LSYRVL Trigger: CAGGACCCTATAGCTGAGGCAGAGGAGGTGGAAGCC...GTGCACTAGCAATTTATGGTCAGGCAGAACAGTAAAATAAGTGGTAGACCCCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CCA 90 bp | AAACAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTCTGGGGCGGTGGCAATaGCTTCCACCTCCTCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: KQNSKKGMGYTLFPIPLILGRWQ*LPPPLP Trigger: AGGCAGAGGAGGTGGAAGCCATTGCCACCGCCCCAG...AATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CCA 90 bp | AAACAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTAGCAGGCACATCCCCTaGGGCGGTGGCAATGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: KQNSKKGMGYTLFPIPLISRHIP*GGGNGF Trigger: GAAGCCATTGCCACCGCCCCAGGGGATGTGCCTGCT...AATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR TCA 90 bp | AAACAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTGGAGAGGGGTCTCCCTaGGCACTCTGGGGAGAACTA | + |
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Preference number: 4 (lower is better) Translates to: KQNSKKGMGYTLFPIPLIGEGSP*ALWGEL Trigger: TAGTTCTCCCCAGAGTGCTCAGGGAGACCCCTCTCC...AATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CCA 90 bp | AAACAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTCAGCTATAGGGTCCTaGGTACTCCCGGGGCCCCTT | + |
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Preference number: 4 (lower is better) Translates to: KQNSKKGMGYTLFPIPLISAIGS*VLPGPL Trigger: AAGGGGCCCCGGGAGTACCCAGGACCCTATAGCTGA...AATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR TCA 90 bp | AAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTGGATGTCCCATAGGTTaGAGTTCTGGTTGTTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: KGMGYTLFPIPLIWGSTTGCPIG*SSGCSQ Trigger: CTGAGAACAACCAGAACTTCAACCTATGGGACATCC...AGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR GCA 90 bp | TGGGTTACACTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTTATTTTACAAAGCAAGGAGGATTaGTGTTGGGCACCTGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: WVTLSFQYLSFGGLPLILQSKED*CWAPAC Trigger: ACAGGCAGGTGCCCAACAGCAATCCTCCTTGCTTTG...TAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR TCA 90 bp | AAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTTCCCCAAATATGAAATaGTCGATTCCAGCCTGCATC | + |
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Preference number: 4 (lower is better) Translates to: KGMGYTLFPIPLIWGSTTSPNMK*SIPACI Trigger: GATGCAGGCTGGAATCGATCATTTCATATTTGGGGA...AGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CCA 90 bp | CAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTGGAAGGAGGATTGCTGTTaGGCACCTGCCTGTATTCCA | + |
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Preference number: 4 (lower is better) Translates to: QNSKKGMGYTLFPIPLIWKEDCC*APACIP Trigger: TGGAATACAGGCAGGTGCCCAACAGCAATCCTCCTT...CCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| 3UTR CAA 72 bp | TCTACCACTTATTTTACTGTTCTGCCTGACCATAAATaGCTAGTGCACTACAGGTTGTGCTGGTCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: STTYFTVLPDHK*LVHYRLCWSEQ Trigger: CTGCTCTGACCAGCACAACCTGTAGTGCACTAGCAATTTATGGTCAGGCAGAACAGTAAAATAAGTGGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR TCA 90 bp | CAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTGGTGGGCTCCCCAAATATaGAATGATCGATTCCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QNSKKGMGYTLFPIPLIWWAPQI*NDRFQP Trigger: AGGCTGGAATCGATCATTTCATATTTGGGGAGCCCA...CCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR GCA 90 bp | TGGGTTACACTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTTATTTTAAGGATATTCATTGCATaGCAGAATACCTCCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: WVTLSFQYLSFGGLPLILRIFIA*QNTSSL Trigger: CAGAGAGGAGGTATTCTGGCATGCAATGAATATCCT...TAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS CCA 90 bp | GCGGTGGCAATGGCTTCCACCTCCTCTGCCTCAGCTATAGGGTCCTaGGTACTCCCGGGGCCCCTTTCTTCAGTTTGGGCCCGAGGGATG | + |
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Preference number: 5 (lower is better) Translates to: AVAMASTSSASAIGS*VLPGPLSSVWARGM Trigger: CATCCCTCGGGCCCAAACTGAAGAAAGGGGCCCCGGGAGTACCCAGGACCCTATAGCTGAGGCAGAGGAGGTGGAAGCCATTGCCACCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CAA 90 bp | CTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTTATTTTACTGTTCTGCTCAAAGCAAGGAGGATaGCTGTTGGGCACCTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: LSFQYLSFGGLPLILLFCSKQGG*LLGTCL Trigger: CAGGCAGGTGCCCAACAGCAATCCTCCTTGCTTTGA...GCAGAACAGTAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CAA 90 bp | CTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTTATTTTACTGTTCTGCTCCCTAGGATATTCATaGCATGCCAGAATACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LSFQYLSFGGLPLILLFCSLGYS*HARIPP Trigger: AGGAGGTATTCTGGCATGCAATGAATATCCTAGGGA...GCAGAACAGTAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CAA 90 bp | TGGGTTACACTCTCTTTCCAATACCTCTCATTTGGGGGTCTACCACTTATTTTAATAACCAGACCTGTCTaGGGTACACCTATAACTCCA | + |
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Preference number: 5 (lower is better) Translates to: WVTLSFQYLSFGGLPLILITRPV*GTPITP Trigger: TGGAGTTATAGGTGTACCCAAGACAGGTCTGGTTAT...TAAAATAAGTGGTAGACCCCCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS-3UTR CAA 90 bp | CAGAACAGTAAGAAAGGAATGGGTTACACTCTCTTTCCAATACCTCTCATTTGGTCCTCTCTGACACAATaGTTCTCTATAAAGATGACA | + |
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Preference number: 5 (lower is better) Translates to: QNSKKGMGYTLFPIPLIWSSLTQ*FSIKMT Trigger: TGTCATCTTTATAGAGAACAATTGTGTCAGAGAGGA...CCAAATGAGAGGTATTGGAAAGAGAGTGTAACCCATTCCTTTCTTACTGTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS CCA 72 bp | GGGAGAACTAGGTGTCCCTCCAGCAGGCACATCCCCTaGGGCGGTGGCAATGGCTTCCACCTCCTCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: GRTRCPSSRHIP*GGGNGFHLLCL Trigger: GAGGCAGAGGAGGTGGAAGCCATTGCCACCGCCCCAGGGGATGTGCCTGCTGGAGGGACACCTAGTTCTCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS CCA 72 bp | GGGTCCTGGGTACTCCCGGGGCCCCTTTCTTCAGTTTaGGCCCGAGGGATGTCCCATAGGTTGAAGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: GSWVLPGPLSSV*ARGMSHRLKFW Trigger: CCAGAACTTCAACCTATGGGACATCCCTCGGGCCCAAACTGAAGAAAGGGGCCCCGGGAGTACCCAGGACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS CCA 72 bp | ATGGCTTCCACCTCCTCTGCCTCAGCTATAGGGTCCTaGGTACTCCCGGGGCCCCTTTCTTCAGTTTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: MASTSSASAIGS*VLPGPLSSVWA Trigger: GGCCCAAACTGAAGAAAGGGGCCCCGGGAGTACCCAGGACCCTATAGCTGAGGCAGAGGAGGTGGAAGCCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS GCA 72 bp | TCGATTCCAGCCTGCATCCCTAGGATATTCATTGCATaGCAGAATACCTCCTCTCTGACACAATTGTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SIPACIPRIFIA*QNTSSLTQLFS Trigger: AGAGAACAATTGTGTCAGAGAGGAGGTATTCTGGCATGCAATGAATATCCTAGGGATGCAGGCTGGAATCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS CAA 72 bp | AAGATGACACATAGGACAAGTATAACCAGACCTGTCTaGGGTACACCTATAACTCCATGTAGCATCCCGTCA | + |
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Preference number: 6 (lower is better) Translates to: KMTHRTSITRPV*GTPITPCSIPS Trigger: TGACGGGATGCTACATGGAGTTATAGGTGTACCCAAGACAGGTCTGGTTATACTTGTCCTATGTGTCATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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| CDS CAA 90 bp | CCTAGGATATTCATTGCATGCCAGAATACCTCCTCTCTGACACAATaGTTCTCTATAAAGATGACACATAGGACAAGTATAACCAGACCT | + |
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Preference number: 6 (lower is better) Translates to: PRIFIACQNTSSLTQ*FSIKMTHRTSITRP Trigger: AGGTCTGGTTATACTTGTCCTATGTGTCATCTTTATAGAGAACAATTGTGTCAGAGAGGAGGTATTCTGGCATGCAATGAATATCCTAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033522.15 |
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