Pregenerated sensors for MAGEA8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079350Ensembl transcript IDs: ENSMUST00000070141.7
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACTATTATTAACATTTTGAGCTACAGAGAATCCTCAAGTCACCCAAACAGAGTGAAATTGAATGTGTTATaGTCTCTTCCACCCAGCTAT | + |
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Preference number: 2 (lower is better) Translates to: TIINILSYRESSSHPNRVKLNVL*SLPPSY Trigger: ATAGCTGGGTGGAAGAGAGCATAACACATTCAATTT...CACTCTGTTTGGGTGACTTGAGGATTCTCTGTAGCTCAAAATGTTAATAATAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | GCAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAGTACCCTGTGATGTCACCATaGTCTCCTGGTCATTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: AMESVTLSDLGLEGKCQYPVMSP*SPGHCL Trigger: TAGACAATGACCAGGAGACCATGGTGACATCACAGG...GTACTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | GCAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAGTACGCAGGTCAGAGAAGTTaGAGCATCTGTTCAAGATCC | + |
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Preference number: 4 (lower is better) Translates to: AMESVTLSDLGLEGKCQYAGQRS*SICSRS Trigger: GGATCTTGAACAGATGCTCCAACTTCTCTGACCTGC...GTACTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | GCAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAGTACGTCACCATGGTCTCCTaGTCATTGTCTAATTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: AMESVTLSDLGLEGKCQYVTMVS*SLSNSC Trigger: ACAGGAATTAGACAATGACCAGGAGACCATGGTGAC...GTACTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | AGAGTGAAAATTGAATGTGTTATGCTCTCTTCCACCCAGCTATCCAATGAGGGTTTCTGCAAAAGCCCTTaGGCCCCACAGGAACCCATA | + |
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Preference number: 4 (lower is better) Translates to: RVKIECVMLSSTQLSNEGFCKSP*APQEPI Trigger: TATGGGTTCCTGTGGGGCCCAAGGGCTTTTGCAGAA...ACCCTCATTGGATAGCTGGGTGGAAGAGAGCATAACACATTCAATTTTCACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR GCA 90 bp | GCAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAGTACCTGTCTATCTCATCTTaGAATGCCTCTGCATACTTT | + |
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Preference number: 4 (lower is better) Translates to: AMESVTLSDLGLEGKCQYLSISS*NASAYF Trigger: AAAGTATGCAGAGGCATTGCAAGATGAGATAGACAG...GTACTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | ACTATTATTAACATTTTGAGCTACAGAGAATCCTCAAGTCACCCAAACAGAGTGATGGGCTATCAGGGATaGAGGCCAGTGCCACACAGG | + |
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Preference number: 4 (lower is better) Translates to: TIINILSYRESSSHPNRVMGYQG*RPVPHR Trigger: CCTGTGTGGCACTGGCCTCCATCCCTGATAGCCCAT...CACTCTGTTTGGGTGACTTGAGGATTCTCTGTAGCTCAAAATGTTAATAATAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | CCAAACAGAGTGAAAATTGAATGTGTTATGCTCTCTTCCACCCAGCTATCCAATGTCTTGGGCATACCCTaGACATCAGTCATCATGCCA | + |
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Preference number: 4 (lower is better) Translates to: PNRVKIECVMLSSTQLSNVLGIP*TSVIMP Trigger: TGGCATGATGACTGATGTCCAGGGTATGCCCAAGAC...ATTGGATAGCTGGGTGGAAGAGAGCATAACACATTCAATTTTCACTCTGTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR TCA 90 bp | AGAGTGAAAATTGAATGTGTTATGCTCTCTTCCACCCAGCTATCCAATGAGGGTACCATACACTTTATTTaGGGTGGTGGTAACTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RVKIECVMLSSTQLSNEGTIHFI*GGGNFL Trigger: GAGGAAGTTACCACCACCTCAAATAAAGTGTATGGT...ACCCTCATTGGATAGCTGGGTGGAAGAGAGCATAACACATTCAATTTTCACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR GCA 90 bp | CCAAACAGAGTGAAAATTGAATGTGTTATGCTCTCTTCCACCCAGCTATCCAATATCTTGCAATGCCTCTaGATACTTTTCAGGGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: PNRVKIECVMLSSTQLSNILQCL*ILFRVG Trigger: GCCTACCCTGAAAAGTATGCAGAGGCATTGCAAGAT...ATTGGATAGCTGGGTGGAAGAGAGCATAACACATTCAATTTTCACTCTGTTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CCA 90 bp | ACTATTATTAACATTTTGAGCTACAGAGAATCCTCAAGTCACCCAAACAGAGTGTGGAGGTTGCAGTATTaGATGTTATGGGAGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TIINILSYRESSSHPNRVWRLQY*MLWESA Trigger: GGCTGACTCCCATAACATCCAATACTGCAACCTCCA...CACTCTGTTTGGGTGACTTGAGGATTCTCTGTAGCTCAAAATGTTAATAATAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR GCA 90 bp | AGAGTGAAAATTGAATGTGTTATGCTCTCTTCCACCCAGCTATCCAATGAGGGTACTTTCCAACATTTCTaGTTTGGTAGGAAATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: RVKIECVMLSSTQLSNEGTFQHF*FGRKCL Trigger: AAGGCATTTCCTACCAAAGCAGAAATGTTGGAAAGT...ACCCTCATTGGATAGCTGGGTGGAAGAGAGCATAACACATTCAATTTTCACTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS TCA 90 bp | CCTGCCTGTATTCCAGGTACCCTTCCTGCACAAACTCCTCAGAGATaGGCTTCCTGGGGTCTTTATGTATGTAAGGATTCCTCCCACCAC | + |
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Preference number: 5 (lower is better) Translates to: PACIPGTLPAQTPQR*ASWGLYVCKDSSHH Trigger: GTGGTGGGAGGAATCCTTACATACATAAAGACCCCAGGAAGCTCATCTCTGAGGAGTTTGTGCAGGAAGGGTACCTGGAATACAGGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CAA 90 bp | GCAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAGTACATGGTCTCCTGGTCATaGTCTAATTCCTGTTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: AMESVTLSDLGLEGKCQYMVSWS*SNSCWA Trigger: GGCCCAACAGGAATTAGACAATGACCAGGAGACCAT...GTACTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS GCA 90 bp | TCTGTTCAAGATCCACGCCTTGGTCCTGTCTATCTCATCTTGCAATaGCTCTGCATACTTTTCAGGGTAGGCTCTGGGATGAGTCTTATT | + |
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Preference number: 5 (lower is better) Translates to: SVQDPRLGPVYLILQ*LCILFRVGSGMSLI Trigger: AATAAGACTCATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCATTGCAAGATGAGATAGACAGGACCAAGGCGTGGATCTTGAACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CAA 90 bp | ACTATTATTAACATTTTGAGCTACAGAGAATCCTCAAGTCACCCAAACAGAGTGGGCCTGAGCACTCTCTaGGAGGTTGCAGTATTGGAT | + |
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Preference number: 5 (lower is better) Translates to: TIINILSYRESSSHPNRVGLSTL*EVAVLD Trigger: ATCCAATACTGCAACCTCCAAGAGAGTGCTCAGGCC...CACTCTGTTTGGGTGACTTGAGGATTCTCTGTAGCTCAAAATGTTAATAATAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CAA 90 bp | ACTATTATTAACATTTTGAGCTACAGAGAATCCTCAAGTCACCCAAACAGAGTGCTAGGAGGATCACTATaGGGCACCTGCCTGTATTCC | + |
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Preference number: 5 (lower is better) Translates to: TIINILSYRESSSHPNRVLGGSL*GTCLYS Trigger: GGAATACAGGCAGGTGCCCAATAGTGATCCTCCTAG...CACTCTGTTTGGGTGACTTGAGGATTCTCTGTAGCTCAAAATGTTAATAATAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS-3UTR CAA 90 bp | ACTATTATTAACATTTTGAGCTACAGAGAATCCTCAAGTCACCCAAACAGAGTGTCCAACATTTCTGCTTaGGTAGGAAATGCCTTCATT | + |
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Preference number: 5 (lower is better) Translates to: TIINILSYRESSSHPNRVSNISA*VGNAFI Trigger: AATGAAGGCATTTCCTACCAAAGCAGAAATGTTGGA...CACTCTGTTTGGGTGACTTGAGGATTCTCTGTAGCTCAAAATGTTAATAATAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS GCA 72 bp | GATCCACGCCTTGGTCCTGTCTATCTCATCTTGCAATaGCTCTGCATACTTTTCAGGGTAGGCTCTGGGATG | + |
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Preference number: 6 (lower is better) Translates to: DPRLGPVYLILQ*LCILFRVGSGM Trigger: CATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCATTGCAAGATGAGATAGACAGGACCAAGGCGTGGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS GCA 72 bp | CGCCTTGGTCCTGTCTATCTCATCTTGCAATGCCTCTaGATACTTTTCAGGGTAGGCTCTGGGATGAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: RLGPVYLILQCL*ILFRVGSGMSL Trigger: AAGACTCATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCATTGCAAGATGAGATAGACAGGACCAAGGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS CCA 72 bp | CAGAGAAGTTGGAGCATCTGTTCAAGATCCACGCCTTaGTCCTGTCTATCTCATCTTGCAATGCCTCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: QRSWSICSRSTP*SCLSHLAMPLH Trigger: ATGCAGAGGCATTGCAAGATGAGATAGACAGGACCAAGGCGTGGATCTTGAACAGATGCTCCAACTTCTCTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS CAA 72 bp | TCAGAGAAGTTGGAGCATCTGTTCAAGATCCACGCCTaGGTCCTGTCTATCTCATCTTGCAATGCCTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SEKLEHLFKIHA*VLSISSCNASA Trigger: TGCAGAGGCATTGCAAGATGAGATAGACAGGACCAAGGCGTGGATCTTGAACAGATGCTCCAACTTCTCTGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS CAA 90 bp | GTAAGCAGGTCAGAGAAGTTGGAGCATCTGTTCAAGATCCACGCCTaGGTCCTGTCTATCTCATCTTGCAATGCCTCTGCATACTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: VSRSEKLEHLFKIHA*VLSISSCNASAYFS Trigger: TGAAAAGTATGCAGAGGCATTGCAAGATGAGATAGACAGGACCAAGGCGTGGATCTTGAACAGATGCTCCAACTTCTCTGACCTGCTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS TCA 72 bp | ATGGTCTCCTGGTCATTGTCTAATTCCTGTTGGGCCTaGGCACTCTCTTGGAGGTTGCAGTATTGGATGTTA | + |
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Preference number: 6 (lower is better) Translates to: MVSWSLSNSCWA*ALSWRLQYWML Trigger: TAACATCCAATACTGCAACCTCCAAGAGAGTGCTCAGGCCCAACAGGAATTAGACAATGACCAGGAGACCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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| CDS CAA 90 bp | TCATTTCATAGTTTAAAACCAGAAAGTCCACCAAGTCATACACCTTaGTGTTCTGTGCATTGTGCAACAAATAAAGTGGGTCTTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SFHSLKPESPPSHTP*CSVHCATNKVGLPG Trigger: GCCTGGAAGACCCACTTTATTTGTTGCACAATGCACAGAACACAAAGGTGTATGACTTGGTGGACTTTCTGGTTTTAAACTATGAAATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070141.7 |
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