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Pregenerated sensors for MAGEA4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033343

Ensembl transcript IDs: ENSMUST00000048675.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGTGCATTGTACAACATGCACAGTGGGTCTTCCTGTTCCTCTACTTaGTTGGTGGAAGCTTCCTCAGATGGGCCTTCAGGAACAGAGGCT +
Preference number: 5 (lower is better)
Translates to: CALYNMHSGSSCSST*LVEASSDGPSGTEA
Trigger: AGCCTCTGTTCCTGAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTTGTACAATGCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS TCA 90 bp AGGACTCTGGGGAGGACTTGGTATTCCACTACTGTACACCTTCTTTaGGGTGGGAGTGGCTTCCTCTTCATCTACCACAGCTATTGTAGC +
Preference number: 5 (lower is better)
Translates to: RTLGRTWYSTTVHLL*GGSGFLFIYHSYCS
Trigger: GCTACAATAGCTGTGGTAGATGAAGAGGAAGCCACTCCCACCTCAAAGAAGGTGTACAGTAGTGGAATACCAAGTCCTCCCCAGAGTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CCA 90 bp ATAGGTGAGCCCCAGGGCAGGGACAAGGATATAGGATTGGACAAATaGGTCCACTTCTATCATGCCAATGCCAGAGACCAGCTTAAAGCA +
Preference number: 5 (lower is better)
Translates to: IGEPQGRDKDIGLDK*VHFYHANARDQLKA
Trigger: TGCTTTAAGCTGGTCTCTGGCATTGGCATGATAGAAGTGGACCCATTTGTCCAATCCTATATCCTTGTCCCTGCCCTGGGGCTCACCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS GCA 90 bp AGGTTGCCAATTCATATAACTTTATGTTCTGTGCATTGTACAACATaGACAGTGGGTCTTCCTGTTCCTCTACTTGGTTGGTGGAAGCTT +
Preference number: 5 (lower is better)
Translates to: RLPIHITLCSVHCTT*TVGLPVPLLGWWKL
Trigger: AAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTTGTACAATGCACAGAACATAAAGTTATATGAATTGGCAACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS GCA 90 bp TTATTCAGCATTTTCCAGATAATCTCCTCACTGACACAGTTTCCTTaGGTGAAAATAGCACCAAGAACAACTATTAGGATACCTGTCTTG +
Preference number: 5 (lower is better)
Translates to: LFSIFQIISSLTQFP*VKIAPRTTIRIPVL
Trigger: CAAGACAGGTATCCTAATAGTTGTTCTTGGTGCTATTTTCACGCAAGGAAACTGTGTCAGTGAGGAGATTATCTGGAAAATGCTGAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CCA 72 bp TGCACAGTGGGTCTTCCTGTTCCTCTACTTGGTTGGTaGAAGCTTCCTCAGATGGGCCTTCAGGAACAGAGG +
Preference number: 6 (lower is better)
Translates to: CTVGLPVPLLGW*KLPQMGLQEQR
Trigger: CCTCTGTTCCTGAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CCA 72 bp ACATGCACAGTGGGTCTTCCTGTTCCTCTACTTGGTTaGTGGAAGCTTCCTCAGATGGGCCTTCAGGAACAG +
Preference number: 6 (lower is better)
Translates to: TCTVGLPVPLLG*WKLPQMGLQEQ
Trigger: CTGTTCCTGAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CAA 72 bp GTACAACATGCACAGTGGGTCTTCCTGTTCCTCTACTaGGTTGGTGGAAGCTTCCTCAGATGGGCCTTCAGG +
Preference number: 6 (lower is better)
Translates to: VQHAQWVFLFLY*VGGSFLRWAFR
Trigger: CCTGAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS TCA 72 bp GGGAGGACTTGGTATTCCACTACTGTACACCTTCTTTaGGGTGGGAGTGGCTTCCTCTTCATCTACCACAGC +
Preference number: 6 (lower is better)
Translates to: GRTWYSTTVHLL*GGSGFLFIYHS
Trigger: GCTGTGGTAGATGAAGAGGAAGCCACTCCCACCTCAAAGAAGGTGTACAGTAGTGGAATACCAAGTCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CCA 72 bp TACAACATGCACAGTGGGTCTTCCTGTTCCTCTACTTaGTTGGTGGAAGCTTCCTCAGATGGGCCTTCAGGA +
Preference number: 6 (lower is better)
Translates to: YNMHSGSSCSST*LVEASSDGPSG
Trigger: TCCTGAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CAA 72 bp AACATGCACAGTGGGTCTTCCTGTTCCTCTACTTGGTaGGTGGAAGCTTCCTCAGATGGGCCTTCAGGAACA +
Preference number: 6 (lower is better)
Translates to: NMHSGSSCSSTW*VEASSDGPSGT
Trigger: TGTTCCTGAAGGCCCATCTGAGGAAGCTTCCACCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS TCA 72 bp GTGGCTTCCTCTTCATCTACCACAGCTATTGTAGCCTaGACATTGTCTAACTCCCTTTGGCTCCGAGCACTG +
Preference number: 6 (lower is better)
Translates to: VASSSSTTAIVA*TLSNSLWLRAL
Trigger: CAGTGCTCGGAGCCAAAGGGAGTTAGACAATGTTCAGGCTACAATAGCTGTGGTAGATGAAGAGGAAGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CCA 72 bp GACTTGGTATTCCACTACTGTACACCTTCTTTGAGGTaGGAGTGGCTTCCTCTTCATCTACCACAGCTATTG +
Preference number: 6 (lower is better)
Translates to: DLVFHYCTPSLR*EWLPLHLPQLL
Trigger: CAATAGCTGTGGTAGATGAAGAGGAAGCCACTCCCACCTCAAAGAAGGTGTACAGTAGTGGAATACCAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS GCA 72 bp ATTCATATAACTTTATGTTCTGTGCATTGTACAACATaGACAGTGGGTCTTCCTGTTCCTCTACTTGGTTGG +
Preference number: 6 (lower is better)
Translates to: IHITLCSVHCTT*TVGLPVPLLGW
Trigger: CCAACCAAGTAGAGGAACAGGAAGACCCACTGTGCATGTTGTACAATGCACAGAACATAAAGTTATATGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS CAA 72 bp AAGGTTGCCAATTCATATAACTTTATGTTCTGTGCATaGTACAACATGCACAGTGGGTCTTCCTGTTCCTCT +
Preference number: 6 (lower is better)
Translates to: KVANSYNFMFCA*YNMHSGSSCSS
Trigger: AGAGGAACAGGAAGACCCACTGTGCATGTTGTACAATGCACAGAACATAAAGTTATATGAATTGGCAACCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2
CDS GCA 72 bp CTCCTCATACTCTCTACCAATACTTTCCAGCATTTCTaGTTTGGTAGTAAATGCCTTCATTTGATATTTGAA +
Preference number: 6 (lower is better)
Translates to: LLILSTNTFQHF*FGSKCLHLIFE
Trigger: TTCAAATATCAAATGAAGGCATTTACTACCAAAGCAGAAATGCTGGAAAGTATTGGTAGAGAGTATGAGGAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048675.2