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Pregenerated sensors for MAGEA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094196

Ensembl transcript IDs: ENSMUST00000079867.6

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGGGAGGACTTGGTATTGCACTGCCATACACTTTATTTGAGGTGGTaGTATCTTCCTCCTCCTCTGATGTCTCCATGGTCTCCTGGTCAT +
Preference number: 5 (lower is better)
Translates to: GEDLVLHCHTLYLRW*YLPPPLMSPWSPGH
Trigger: ATGACCAGGAGACCATGGAGACATCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGCAATACCAAGTCCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS TCA 90 bp TCCACCAAGTCATACACCTTTGTGTTCTGTGCATTGTGCAACAAATaGAGTGGGTCTTCCAGGCCCTCTGATCCTTTGATGGAAGCTTCC +
Preference number: 5 (lower is better)
Translates to: STKSYTFVFCALCNK*SGSSRPSDPLMEAS
Trigger: GGAAGCTTCCATCAAAGGATCAGAGGGCCTGGAAGACCCACTTCATTTGTTGCACAATGCACAGAACACAAAGGTGTATGACTTGGTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS TCA 72 bp ACAAATGAAGTGGGTCTTCCAGGCCCTCTGATCCTTTaGTGGAAGCTTCCTCAGATGGGCTATCAGGGATGG +
Preference number: 6 (lower is better)
Translates to: TNEVGLPGPLIL*WKLPQMGYQGW
Trigger: CCATCCCTGATAGCCCATCTGAGGAAGCTTCCATCAAAGGATCAGAGGGCCTGGAAGACCCACTTCATTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS CAA 90 bp GAGGACTCTGGGGAGGACTTGGTATTGCACTGCCATACACTTTATTaGAGGTGGTGGTATCTTCCTCCTCCTCTGATGTCTCCATGGTCT +
Preference number: 6 (lower is better)
Translates to: EDSGEDLVLHCHTLY*RWWYLPPPLMSPWS
Trigger: AGACCATGGAGACATCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGCAATACCAAGTCCTCCCCAGAGTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS TCA 72 bp ATTGTGCAACAAATGAAGTGGGTCTTCCAGGCCCTCTaGTCCTTTGATGGAAGCTTCCTCAGATGGGCTATC +
Preference number: 6 (lower is better)
Translates to: IVQQMKWVFQAL*SFDGSFLRWAI
Trigger: GATAGCCCATCTGAGGAAGCTTCCATCAAAGGATCAGAGGGCCTGGAAGACCCACTTCATTTGTTGCACAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS TCA 72 bp ATTCCAGGTACCCTTCCTGCACAAACTCCTCAGAGATaGGCTTCCTGGGGTCTTTATGTATGTAAGGATCCC +
Preference number: 6 (lower is better)
Translates to: IPGTLPAQTPQR*ASWGLYVCKDP
Trigger: GGGATCCTTACATACATAAAGACCCCAGGAAGCTCATCTCTGAGGAGTTTGTGCAGGAAGGGTACCTGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS GCA 72 bp CAGAAAGTCCACCAAGTCATACACCTTTGTGTTCTGTaGATTGTGCAACAAATGAAGTGGGTCTTCCAGGCC +
Preference number: 6 (lower is better)
Translates to: QKVHQVIHLCVL*IVQQMKWVFQA
Trigger: GGCCTGGAAGACCCACTTCATTTGTTGCACAATGCACAGAACACAAAGGTGTATGACTTGGTGGACTTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS CCA 72 bp GACTTGGTATTGCACTGCCATACACTTTATTTGAGGTaGTGGTATCTTCCTCCTCCTCTGATGTCTCCATGG +
Preference number: 6 (lower is better)
Translates to: DLVLHCHTLYLR*WYLPPPLMSPW
Trigger: CCATGGAGACATCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGCAATACCAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS TCA 72 bp TCATACACCTTTGTGTTCTGTGCATTGTGCAACAAATaGAGTGGGTCTTCCAGGCCCTCTGATCCTTTGATG +
Preference number: 6 (lower is better)
Translates to: SYTFVFCALCNK*SGSSRPSDPLM
Trigger: CATCAAAGGATCAGAGGGCCTGGAAGACCCACTTCATTTGTTGCACAATGCACAGAACACAAAGGTGTATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6
CDS CAA 90 bp TCATTTGATAGTTTAAAACCAGAAAGTCCACCAAGTCATACACCTTaGTGTTCTGTGCATTGTGCAACAAATGAAGTGGGTCTTCCAGGC +
Preference number: 6 (lower is better)
Translates to: SFDSLKPESPPSHTP*CSVHCATNEVGLPG
Trigger: GCCTGGAAGACCCACTTCATTTGTTGCACAATGCACAGAACACAAAGGTGTATGACTTGGTGGACTTTCTGGTTTTAAACTATCAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079867.6