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Pregenerated sensors for MAGEA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096644

Ensembl transcript IDs: ENSMUST00000078193.5

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AATGAGGGTACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGATCTTCCTCCTCCTCTaGCGTCTCCATGGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: NEGTTMESVTLSDLGLEGIFLLL*RLHGFL
Trigger: CAGGAAACCATGGAGACGTCAGAGGAGGAGGAAGAT...CCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGTACCCTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR TCA 90 bp GAGGGTACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAACACTCAGTACAGCTATaGGGATACCTGTCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: EGTTMESVTLSDLGLEGKHSVQL*GYLSWA
Trigger: TGCCCAAGACAGGTATCCTCATAGCTGTACTGAGTG...TTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGTACCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR GCA 90 bp ACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAACACTCTCTTGGAGGCTaGAGTATTGGGTGTTACGGG +
Preference number: 4 (lower is better)
Translates to: TTMESVTLSDLGLEGKCQHSLGG*SIGCYG
Trigger: CCCGTAACACCCAATACTGCAGCCTCCAAGAGAGTG...TTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR TCA 90 bp GAGGGTACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAAGCCATACACTTTATTTaGGGTGGTGGTATCTTCCTC +
Preference number: 4 (lower is better)
Translates to: EGTTMESVTLSDLGLEGKAIHFI*GGGIFL
Trigger: GAGGAAGATACCACCACCTCAAATAAAGTGTATGGC...TTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGTACCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR TCA 90 bp ACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAATACCAAACTCCTCAGAGATaGGCTTCCTGGGGTCTTTAT +
Preference number: 4 (lower is better)
Translates to: TMESVTLSDLGLEGKCQYQTPQR*ASWGLY
Trigger: ATAAAGACCCCAGGAAGCTCATCTCTGAGGAGTTTG...GTATTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR CCA 90 bp ACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAATACCCTCTGACGTCTCCATaGTTTCCTGGTCATTGTCTA +
Preference number: 4 (lower is better)
Translates to: TMESVTLSDLGLEGKCQYPLTSP*FPGHCL
Trigger: TAGACAATGACCAGGAAACCATGGAGACGTCAGAGG...GTATTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS TCA 90 bp CATTGTGCAACAAATAAAGTGGGTCTTCCAGGCCCCCTGATCCTTTaGTGGAAGCTTCCTCAGATGGGCTATCAGGGATGGAGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: HCATNKVGLPGPLIL*WKLPQMGYQGWRPV
Trigger: CACTGGCCTCCATCCCTGATAGCCCATCTGAGGAAGCTTCCATCAAAGGATCAGGGGGCCTGGAAGACCCACTTTATTTGTTGCACAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR CAA 90 bp AATGAGGGTACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGGGCCTGAGCACTCTCTaGGAGGCTGCAGTATTGGGT +
Preference number: 5 (lower is better)
Translates to: NEGTTMESVTLSDLGLEGGLSTL*EAAVLG
Trigger: ACCCAATACTGCAGCCTCCAAGAGAGTGCTCAGGCC...CCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGTACCCTCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CCA 90 bp CTTTATTTGAGGTGGTGGTATCTTCCTCCTCCTCTGACGTCTCCATaGTTTCCTGGTCATTGTCTAATTCCTGTTGGGCCTGAGCACTCT +
Preference number: 5 (lower is better)
Translates to: LYLRWWYLPPPLTSP*FPGHCLIPVGPEHS
Trigger: AGAGTGCTCAGGCCCAACAGGAATTAGACAATGACCAGGAAACCATGGAGACGTCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR CAA 90 bp GAGGGTACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAACTAGGAGGATCACTATaGGGCACCTGCCTGTATTTC +
Preference number: 5 (lower is better)
Translates to: EGTTMESVTLSDLGLEGKLGGSL*GTCLYF
Trigger: GAAATACAGGCAGGTGCCCAATAGTGATCCTCCTAG...TTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGTACCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR CAA 90 bp AATGAGGGTACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGATGGTTTCCTGGTCATaGTCTAATTCCTGTTGGGCC +
Preference number: 5 (lower is better)
Translates to: NEGTTMESVTLSDLGLEGMVSWS*SNSCWA
Trigger: GGCCCAACAGGAATTAGACAATGACCAGGAAACCAT...CCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGTACCCTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS-3UTR CAA 90 bp ACAACAATGGAATCAGTGACTCTGTCTGACCTGGGGTTAGAAGGGAAATGCCAAAGCAGGTCAGAGAAGTaGGAGCATCTGTTCAAGATC +
Preference number: 5 (lower is better)
Translates to: TTMESVTLSDLGLEGKCQSRSEK*EHLFKI
Trigger: GATCTTGAACAGATGCTCCAACTTCTCTGACCTGCT...TTGGCATTTCCCTTCTAACCCCAGGTCAGACAGAGTCACTGATTCCATTGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CAA 90 bp GAGGACTCTGGGGAGGACTTGGTATTCCACTGCCATACACTTTATTaGAGGTGGTGGTATCTTCCTCCTCCTCTGACGTCTCCATGGTTT +
Preference number: 6 (lower is better)
Translates to: EDSGEDLVFHCHTLY*RWWYLPPPLTSPWF
Trigger: AAACCATGGAGACGTCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGGAATACCAAGTCCTCCCCAGAGTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS GCA 72 bp GGCCTTGGTCCTGTATATCTCATCTCGCAAAGCCTCTaGATACTTTTCAGGGTAGGCTCTGGGATGAGTCTT +
Preference number: 6 (lower is better)
Translates to: GLGPVYLISQSL*ILFRVGSGMSL
Trigger: AAGACTCATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCTTTGCGAGATGAGATATACAGGACCAAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CAA 72 bp GGGGAGGACTTGGTATTCCACTGCCATACACTTTATTaGAGGTGGTGGTATCTTCCTCCTCCTCTGACGTCT +
Preference number: 6 (lower is better)
Translates to: GEDLVFHCHTLY*RWWYLPPPLTS
Trigger: AGACGTCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGGAATACCAAGTCCTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CCA 72 bp GACTTGGTATTCCACTGCCATACACTTTATTTGAGGTaGTGGTATCTTCCTCCTCCTCTGACGTCTCCATGG +
Preference number: 6 (lower is better)
Translates to: DLVFHCHTLYLR*WYLPPPLTSPW
Trigger: CCATGGAGACGTCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGGAATACCAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CCA 72 bp CAGAGAAGTTGGAGCATCTGTTCAAGATCCAGGCCTTaGTCCTGTATATCTCATCTCGCAAAGCCTCTGCAT +
Preference number: 6 (lower is better)
Translates to: QRSWSICSRSRP*SCISHLAKPLH
Trigger: ATGCAGAGGCTTTGCGAGATGAGATATACAGGACCAAGGCCTGGATCTTGAACAGATGCTCCAACTTCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CAA 72 bp TCAGAGAAGTTGGAGCATCTGTTCAAGATCCAGGCCTaGGTCCTGTATATCTCATCTCGCAAAGCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: SEKLEHLFKIQA*VLYISSRKASA
Trigger: TGCAGAGGCTTTGCGAGATGAGATATACAGGACCAAGGCCTGGATCTTGAACAGATGCTCCAACTTCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CAA 90 bp GTGAGCAGGTCAGAGAAGTTGGAGCATCTGTTCAAGATCCAGGCCTaGGTCCTGTATATCTCATCTCGCAAAGCCTCTGCATACTTTTCA +
Preference number: 6 (lower is better)
Translates to: VSRSEKLEHLFKIQA*VLYISSRKASAYFS
Trigger: TGAAAAGTATGCAGAGGCTTTGCGAGATGAGATATACAGGACCAAGGCCTGGATCTTGAACAGATGCTCCAACTTCTCTGACCTGCTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5
CDS CCA 72 bp TTGGTATTCCACTGCCATACACTTTATTTGAGGTGGTaGTATCTTCCTCCTCCTCTGACGTCTCCATGGTTT +
Preference number: 6 (lower is better)
Translates to: LVFHCHTLYLRW*YLPPPLTSPWF
Trigger: AAACCATGGAGACGTCAGAGGAGGAGGAAGATACCACCACCTCAAATAAAGTGTATGGCAGTGGAATACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000078193.5