Pregenerated sensors for MAFA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047591Ensembl transcript IDs: ENSMUST00000062002.6
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCTGCGGCTGCACCGCCGGAGCGCGCGTCCCGGGCCTCAGAGTCTaGACCGAGACCGGGGCGGCCTGCGCAAACTTGTCCCCGGCCGTG | + |
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Preference number: 1 (lower is better) Translates to: SCGCTAGARVPGLRV*TETGAACANLSPAV Trigger: CACGGCCGGGGACAAGTTTGCGCAGGCCGCCCCGGTCTCGGTTCAGACTCTGAGGCCCGGGACGCGCGCTCCGGCGGTGCAGCCGCAGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 90 bp | CCGGGAGCTGGTGGCGGCGCGGCCCCGCTGCGGCTGGGCGGAGGTTaGGACGCAGAACTGCGCTCCACGTCTGTACAAGTGGACGCTGCC | + |
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Preference number: 1 (lower is better) Translates to: PGAGGGAAPLRLGGG*DAELRSTSVQVDAA Trigger: GGCAGCGTCCACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGGCCGCGCCGCCACCAGCTCCCGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 90 bp | GGCGGAGGCTACCGGGAGCTGGTGGCGGCGCGGCCCCGCTGCGGCTaGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGTCTGTACAAG | + |
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Preference number: 1 (lower is better) Translates to: GGGYRELVAARPRCG*AEVGTQNCAPRLYK Trigger: CTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGGCCGCGCCGCCACCAGCTCCCGGTAGCCTCCGCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR TCA 90 bp | ACAAGCGGGCTGGAAGGCAGGCAGGGCCGGACCCCTCAGAGCGAATaGGCGAGGAGGGCACATGCGGGCACTCGCCGACCTCCGAGGGCG | + |
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Preference number: 1 (lower is better) Translates to: TSGLEGRQGRTPQSE*ARRAHAGTRRPPRA Trigger: CGCCCTCGGAGGTCGGCGAGTGCCCGCATGTGCCCTCCTCGCTCATTCGCTCTGAGGGGTCCGGCCCTGCCTGCCTTCCAGCCCGCTTGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR GCA 90 bp | GCGGCGCGGCCCCGCTGCGGCTGGGCGGAGGTTGGGACGCAGAACTaGGCTCCACGTCTGTACAAGTGGACGCTGCCGAGGAAGTCAGAC | + |
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Preference number: 1 (lower is better) Translates to: AARPRCGWAEVGTQN*APRLYKWTLPRKSD Trigger: GTCTGACTTCCTCGGCAGCGTCCACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGGCCGCGCCGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 90 bp | TGGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGTCTGTACAAGTaGACGCTGCCGAGGAAGTCAGACCTGGCTCGGACTTCCCTAAGC | + |
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Preference number: 1 (lower is better) Translates to: WAEVGTQNCAPRLYK*TLPRKSDLARTSLS Trigger: GCTTAGGGAAGTCCGAGCCAGGTCTGACTTCCTCGGCAGCGTCCACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CAA 90 bp | ACCGGGAGCTGGTGGCGGCGCGGCCCCGCTGCGGCTGGGCGGAGGTaGGGACGCAGAACTGCGCTCCACGTCTGTACAAGTGGACGCTGC | + |
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Preference number: 2 (lower is better) Translates to: TGSWWRRGPAAAGRR*GRRTALHVCTSGRC Trigger: GCAGCGTCCACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGGCCGCGCCGCCACCAGCTCCCGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR-3UTR GCA 90 bp | TACGCCCAGCTTATAACACCCTCCACCGGGCCTCTCTTCCGGCTAGTCCAAAAAGGCTTGGCGGCGGGGTaGGCAGGGCGGACAGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: YAQLITPSTGPLFRLVQKGLAAG*AGRTGG Trigger: TCCTCCTGTCCGCCCTGCGCACCCCGCCGCCAAGCC...TTTTTGGACTAGCCGGAAGAGAGGCCCGGTGGAGGGTGTTATAAGCTGGGCGTA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 72 bp | CGGCGGGAGAGGCGCACCGCGGTAGGTACCTGGAGCTaGGGCTTGGCGGCGGGGTGCGCAGGGCGGACAGGA | + |
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Preference number: 3 (lower is better) Translates to: RRERRTAVGTWS*GLAAGCAGRTG Trigger: TCCTGTCCGCCCTGCGCACCCCGCCGCCAAGCCCCAGCTCCAGGTACCTACCGCGGTGCGCCTCTCCCGCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 72 bp | TACCGGGAGCTGGTGGCGGCGCGGCCCCGCTGCGGCTaGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGT | + |
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Preference number: 3 (lower is better) Translates to: YRELVAARPRCG*AEVGTQNCAPR Trigger: ACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGGCCGCGCCGCCACCAGCTCCCGGTA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 72 bp | GGTGGCGGCGCGGCCCCGCTGCGGCTGGGCGGAGGTTaGGACGCAGAACTGCGCTCCACGTCTGTACAAGTG | + |
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Preference number: 3 (lower is better) Translates to: GGGAAPLRLGGG*DAELRSTSVQV Trigger: CACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGGCCGCGCCGCCACC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR-3UTR CAA 90 bp | GAGGCAGAAAGAAAGACGACAGAGGAGCGCGGGGCCGGCGGAGGCTACCGGGAGGCGGCTGGGCGGAGGTaGGGACGCAGAACTGCGCTC | + |
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Preference number: 3 (lower is better) Translates to: EAERKTTEERGAGGGYREAAGRR*GRRTAL Trigger: GAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGC...CTCCCGGTAGCCTCCGCCGGCCCCGCGCTCCTCTGTCGTCTTTCTTTCTGCCTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR GCA 72 bp | CCCCGCTGCGGCTGGGCGGAGGTTGGGACGCAGAACTaGGCTCCACGTCTGTACAAGTGGACGCTGCCGAGG | + |
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Preference number: 3 (lower is better) Translates to: PRCGWAEVGTQN*APRLYKWTLPR Trigger: CCTCGGCAGCGTCCACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 72 bp | TTCCTCGGCTTCCTCTACAGGGAGCAGCGAACAGGGTaGGGACAAGCGGGCTGGAAGGCAGGCAGGGCCGGA | + |
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Preference number: 3 (lower is better) Translates to: FLGFLYREQRTG*GQAGWKAGRAG Trigger: TCCGGCCCTGCCTGCCTTCCAGCCCGCTTGTCCCCACCCTGTTCGCTGCTCCCTGTAGAGGAAGCCGAGGAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CCA 72 bp | GTTGGGACGCAGAACTGCGCTCCACGTCTGTACAAGTaGACGCTGCCGAGGAAGTCAGACCTGGCTCGGACT | + |
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Preference number: 3 (lower is better) Translates to: VGTQNCAPRLYK*TLPRKSDLART Trigger: AGTCCGAGCCAGGTCTGACTTCCTCGGCAGCGTCCACTTGTACAGACGTGGAGCGCAGTTCTGCGTCCCAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | GGTGCGCAGGGCGGACAGGAGGACCCCGGCAGCTGCGGCTGCACCGCCGGAGCGTGTGCCCGGGCTGGGTaGGCAGAAGCTGGGCGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GAQGGQEDPGSCGCTAGACARAG*AEAGRR Trigger: TCTTCGCCCAGCTTCTGCGCACCCAGCCCGGGCACA...CGCTCCGGCGGTGCAGCCGCAGCTGCCGGGGTCCTCCTGTCCGCCCTGCGCACC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR TCA 90 bp | CCCTCAGAGCGAATGAGCGAGGAGGGCACATGCGGGCACTCGCCGACCTCCGAGGGTGGCCGCTGCCGATaGGCGCCTCCACCGCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PSERMSEEGTCGHSPTSEGGRCR*APPPRP Trigger: AGGACGCGGTGGAGGCGCTCATCGGCAGCGGCCACC...CTCGGAGGTCGGCGAGTGCCCGCATGTGCCCTCCTCGCTCATTCGCTCTGAGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | CCCGCTGCGGCTGGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGTCTGTACATCCAAGCGCACGTGGTaGCCTGCGCCGCCTCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: PAAAGRRLGRRTALHVCTSKRTW*PAPPPP Trigger: CGGCGGAGGCGGCGCAGGCCACCACGTGCGCTTGGA...TGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | CCCTCAGAGCGAATGAGCGAGGAGGGCACATGCGGGCACTCGCCGACCTCCGAGGTGGGCAGTGTGGTGTaGGCCGTGGTGGTGGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: PSERMSEEGTCGHSPTSEVGSVV*AVVVAG Trigger: GCCGGCCACCACCACGGCGCACACCACACTGCCCAC...CTCGGAGGTCGGCGAGTGCCCGCATGTGCCCTCCTCGCTCATTCGCTCTGAGGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | CCCGCTGCGGCTGGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGTCTGTACACGATGGCCAGTGGGCTaGTGGGCAGCTCTGCGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PAAAGRRLGRRTALHVCTRWPVG*WAALRP Trigger: TGGGCGCAGAGCTGCCCAGCAGCCCACTGGCCATCG...TGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | CCCGCTGCGGCTGGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGTCTGTACATGGCCAGTGGGCTGCTaGGCAGCTCTGCGCCCATCG | + |
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Preference number: 4 (lower is better) Translates to: PAAAGRRLGRRTALHVCTWPVGC*AALRPS Trigger: CGATGGGCGCAGAGCTGCCCAGCAGCCCACTGGCCA...TGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | CGGAGGCAGAAAGAAAGACGACAGAGGAGCGCGGGGCCGGCGGAGGCTACCGGGTGGGTGCGCAGAAGCTaGGCGAAGAGGGCACCGAGG | + |
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Preference number: 4 (lower is better) Translates to: RRQKERRQRSAGPAEATGWVRRS*AKRAPR Trigger: CCTCGGTGCCCTCTTCGCCCAGCTTCTGCGCACCCA...CCCGGTAGCCTCCGCCGGCCCCGCGCTCCTCTGTCGTCTTTCTTTCTGCCTCCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | GACCCCTCAGAGCGAATGAGCGAGGAGGGCACATGCGGGCACTCGCCGACCTCCTGTGCGCCGTGGTGGTaGCCGGCACCCATGTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: DPSERMSEEGTCGHSPTSCAPWW*PAPMSS Trigger: GGACGACATGGGTGCCGGCCACCACCACGGCGCACA...GGAGGTCGGCGAGTGCCCGCATGTGCCCTCCTCGCTCATTCGCTCTGAGGGGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | GAAATAGCAGCGCGGGAGTCCGGGCCAGCCCCAACCCGGCTGAGCACGGCCACCTCGGGGTTCAGGTGGTaGTGGTACCCGCTCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: EIAARESGPAPTRLSTATSGFRW*WYPLIQ Trigger: CTGGATGAGCGGGTACCAGCACCACCTGAACCCCGA...GGTGGCCGTGCTCAGCCGGGTTGGGGCTGGCCCGGACTCCCGCGCTGCTATTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | GAAATAGCAGCGCGGGAGTCCGGGCCAGCCCCAACCCGGCTGAGCACGGCCACCGGGTTCAGGTGGTGCTaGTACCCGCTCATCCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: EIAARESGPAPTRLSTATGFRWC*YPLIQY Trigger: GTACTGGATGAGCGGGTACCAGCACCACCTGAACCC...GGTGGCCGTGCTCAGCCGGGTTGGGGCTGGCCCGGACTCCCGCGCTGCTATTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | CCCTCAGAGCGAATGAGCGAGGAGGGCACATGCGGGCACTCGCCGACCTCCGAGTCCAGAATGTGCCGCTaGTGCACCCGCTTGAAGCGG | + |
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Preference number: 4 (lower is better) Translates to: PSERMSEEGTCGHSPTSESRMCR*CTRLKR Trigger: CCGCTTCAAGCGGGTGCAGCAGCGGCACATTCTGGA...CTCGGAGGTCGGCGAGTGCCCGCATGTGCCCTCCTCGCTCATTCGCTCTGAGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | CTCCACGTCTGTACAAGTGGACGCTGCCGAGGAAGTCAGACCTGGCTCGGACTTTGGTGCGCGCCGTGGTaGCCGCTGCCGATGAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: LHVCTSGRCRGSQTWLGLWCAPW*PLPMSA Trigger: GGCGCTCATCGGCAGCGGCCACCACGGCGCGCACCA...AAGTCCGAGCCAGGTCTGACTTCCTCGGCAGCGTCCACTTGTACAGACGTGGAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | CCCGCTGCGGCTGGGCGGAGGTTGGGACGCAGAACTGCGCTCCACGTCTGTACATGCTCCACCTGGCTCTaGAGCTGGCACTTCTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: PAAAGRRLGRRTALHVCTCSTWL*SWHFSL Trigger: GAGCGAGAAGTGCCAGCTCCAGAGCCAGGTGGAGCA...TGTACAGACGTGGAGCGCAGTTCTGCGTCCCAACCTCCGCCCAGCCGCAGCGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | TACGCCCAGCTTATAACACCCTCCACCGGGCCTCTCTTCCGGCTAGTCCAAAAACGCCTGTGCCCGGGCTaGGTGCGCAGAAGCTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: YAQLITPSTGPLFRLVQKRLCPG*VRRSWA Trigger: CGCCCAGCTTCTGCGCACCCAGCCCGGGCACAGGCG...TTTTTGGACTAGCCGGAAGAGAGGCCCGGTGGAGGGTGTTATAAGCTGGGCGTA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | CAGATACGCCCAGCTTATAACACCCTCCACCGGGCCTCTCTTCCGGCTAGTCCAGTGTGGTGTGCGCCGTaGTGGTGGCCGGCACCCATG | + |
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Preference number: 4 (lower is better) Translates to: QIRPAYNTLHRASLPASPVWCAP*WWPAPM Trigger: CATGGGTGCCGGCCACCACCACGGCGCACACCACAC...TGGACTAGCCGGAAGAGAGGCCCGGTGGAGGGTGTTATAAGCTGGGCGTATCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR TCA 90 bp | TACGCCCAGCTTATAACACCCTCCACCGGGCCTCTCTTCCGGCTAGTCCAAAAAAGGAGCAGGGCGTGCTaGGGGGCGTCGAGGACAGCG | + |
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Preference number: 4 (lower is better) Translates to: YAQLITPSTGPLFRLVQKRSRAC*GASRTA Trigger: CGCTGTCCTCGACGCCCCTCAGCACGCCCTGCTCCT...TTTTTGGACTAGCCGGAAGAGAGGCCCGGTGGAGGGTGTTATAAGCTGGGCGTA 62% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | GACTCAGTGAGAGCCACCTGGGAGCAGCAGAGGACGGAAGGGGAAGGAGCCTCGACCTGGCTCTGGAGCTaGCACTTCTCGCTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: DSVRATWEQQRTEGEGASTWLWS*HFSLSR Trigger: TCTGGAGAGCGAGAAGTGCCAGCTCCAGAGCCAGGT...CGAGGCTCCTTCCCCTTCCGTCCTCTGCTGCTCCCAGGTGGCTCTCACTGAGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CCA 90 bp | ACAGAGCAAGTAAACGGAGGCAGAAAGAAAGACGACAGAGGAGCGCGGGGCCGGACAGGTCCCGCTCCTTaGCCAGACGCCCCACCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TEQVNGGRKKDDRGARGRTGPAP*PDAPPP Trigger: TGGAGGTGGGGCGTCTGGCCAAGGAGCGGGACCTGT...CCGGCCCCGCGCTCCTCTGTCGTCTTTCTTTCTGCCTCCGTTTACTTGCTCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | CTCCACGTCTGTACAAGTGGACGCTGCCGAGGAAGTCAGACCTGGCTCGGACTTAGAATGTGCCGCTGCTaGACCCGCTTGAAGCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: LHVCTSGRCRGSQTWLGLRMCRC*TRLKRH Trigger: GTGCCGCTTCAAGCGGGTGCAGCAGCGGCACATTCT...AAGTCCGAGCCAGGTCTGACTTCCTCGGCAGCGTCCACTTGTACAGACGTGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR GCA 90 bp | CAGATACGCCCAGCTTATAACACCCTCCACCGGGCCTCTCTTCCGGCTAGTCCATCGCTCTCCAGAATGTaGCGCTGCTGCACCCGCTTG | + |
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Preference number: 4 (lower is better) Translates to: QIRPAYNTLHRASLPASPSLSRM*RCCTRL Trigger: CAAGCGGGTGCAGCAGCGGCACATTCTGGAGAGCGA...TGGACTAGCCGGAAGAGAGGCCCGGTGGAGGGTGTTATAAGCTGGGCGTATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| 3UTR CAA 72 bp | CAAAAACCAACAACACAAAATTTCTTTCCCAACGATTaGTCTAGCGTCCTGTTCAGAAGACTCAGTGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: QKPTTQNFFPND*SSVLFRRLSES Trigger: GCTCTCACTGAGTCTTCTGAACAGGACGCTAGACAAATCGTTGGGAAAGAAATTTTGTGTTGTTGGTTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CAA 90 bp | GACCCCTCAGAGCGAATGAGCGAGGAGGGCACATGCGGGCACTCGCCGACCTCCAAGTCGGGTGCGCCTTaGGCCGCCCCGGGGCCAGCC | + |
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Preference number: 5 (lower is better) Translates to: DPSERMSEEGTCGHSPTSKSGAP*AAPGPA Trigger: GGCTGGCCCCGGGGCGGCCAAAGGCGCACCCGACTT...GGAGGTCGGCGAGTGCCCGCATGTGCCCTCCTCGCTCATTCGCTCTGAGGGGTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS GCA 90 bp | GTGATGGTGATGGTGGGCAGAGTGATGATGGTGGGCAGTGTGGTGTaGGCCGTGGTGGTGGCCGGCACCCATGTCGTCCGCGCCGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: VMVMVGRVMMVGSVV*AVVVAGTHVVRAAA Trigger: GGCGGCGGCGCGGACGACATGGGTGCCGGCCACCACCACGGCGCACACCACACTGCCCACCATCATCACTCTGCCCACCATCACCATCAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CAA 90 bp | GAGGCAGAAAGAAAGACGACAGAGGAGCGCGGGGCCGGCGGAGGCTACCGGGAGCGGATGACCTCCTCCTaGCTGAAGCCGCGGAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: EAERKTTEERGAGGGYRERMTSS*LKPRSC Trigger: GCAGCTCCGCGGCTTCAGCAAGGAGGAGGTCATCCG...CTCCCGGTAGCCTCCGCCGGCCCCGCGCTCCTCTGTCGTCTTTCTTTCTGCCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS GCA 90 bp | TACAGGTCCCGCTCCTTGGCCAGACGCCCCACCTCCAGCTTCAGCTaGTCCACCTGGCTCTGGAGCTGGCACTTCTCGCTCTCCAGAATG | + |
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Preference number: 5 (lower is better) Translates to: YRSRSLARRPTSSFS*STWLWSWHFSLSRM Trigger: CATTCTGGAGAGCGAGAAGTGCCAGCTCCAGAGCCAGGTGGAGCAGCTGAAGCTGGAGGTGGGGCGTCTGGCCAAGGAGCGGGACCTGTA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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| CDS-3UTR CAA 90 bp | ACAGAGCAAGTAAACGGAGGCAGAAAGAAAGACGACAGAGGAGCGCGGGGCCGGTACAGGTCCCGCTCCTaGGCCAGACGCCCCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: TEQVNGGRKKDDRGARGRYRSRS*ARRPTS Trigger: GGAGGTGGGGCGTCTGGCCAAGGAGCGGGACCTGTA...CCGGCCCCGCGCTCCTCTGTCGTCTTTCTTTCTGCCTCCGTTTACTTGCTCTGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062002.6 |
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