Pregenerated sensors for MADCAM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020310Ensembl transcript IDs: ENSMUST00000020554.8, ENSMUST00000217748.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGCCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCGAGACTGTTCGGGTCTaGAGGCCAGATGTTGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: GHTIILMPQILQLVTLCLETVRV*RPDVVG Trigger: GCCCACAACATCTGGCCTGCAGACCCGAACAGTCTC...GAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | GTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCCAAATCCTGACGCTTAGCCATGCCTaGGCCCCAGCCTCCCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: VLTTKERGHTIILMPQILTLSHA*APASLL Trigger: CAAGAGGGAGGCTGGGGCCCAGGCATGGCTAAGCGT...CAGGATTTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR TCA 90 bp | GCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCCTTTAGTCTGGCATAATGGAAGGACTGTCCTCTGCTaGGCTGGTAGGGTACTAGGG | + |
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Preference number: 4 (lower is better) Translates to: APNPAAGHSLPPLVWHNGRTVLC*AGRVLG Trigger: CCCTAGTACCCTACCAGCTCAGCAGAGGACAGTCCT...TCCATTATGCCAGACTAAAGGAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | GCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCCTTTAGTCTGGCATAATGGAGTGCAGGACACCACCTaGTCCTGTCCAGGTACAAGG | + |
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Preference number: 4 (lower is better) Translates to: APNPAAGHSLPPLVWHNGVQDTT*SCPGTR Trigger: CCTTGTACCTGGACAGGACCAGGTGGTGTCCTGCAC...TCCATTATGCCAGACTAAAGGAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | CCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCCTCTCCTCTTCTTGCTCTaGTTCCAGGGCTTGGGCACC | + |
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Preference number: 4 (lower is better) Translates to: PHYHLDAPNPAAGHSLPPLLFLL*FQGLGT Trigger: GGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAG...AGGAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| 3UTR CAA 72 bp | GTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTaGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: VLTTKERGHTII*MPQILQLVTLC Trigger: GCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR TCA 90 bp | GGCTTTTATTTAGCTCTGGGCCAGCAGGCAGAAAAGCCCAGAAGTCAGGAGAAAAGGACTGTCCTCTGCTaGGCTGGTAGGGTACTAGGG | + |
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Preference number: 4 (lower is better) Translates to: GFYLALGQQAEKPRSQEKRTVLC*AGRVLG Trigger: CCCTAGTACCCTACCAGCTCAGCAGAGGACAGTCCT...TTTCTCCTGACTTCTGGGCTTTTCTGCCTGCTGGCCCAGAGCTAAATAAAAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR TCA 90 bp | CCAGCAGGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACAGGAGTGCCTGTGTCTaGCAGCATGCCCCGTACAGA | + |
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Preference number: 4 (lower is better) Translates to: PAGRKAQKSGETYRCADHRSACV*QHAPYR Trigger: TCTGTACGGGGCATGCTGTCAGACACAGGCACTCCT...GTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCCTGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR GCA 90 bp | CCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCCTCTGTGTCTGACAGCATaGCCCGTACAGAGAGGATAC | + |
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Preference number: 4 (lower is better) Translates to: PHYHLDAPNPAAGHSLPPLCLTA*PVQRGY Trigger: GTATCCTCTCTGTACGGGGCATGCTGTCAGACACAG...AGGAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | AAGAGGCCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCACACACACAGGAGTaGCTGTGTCTGACAGCATGC | + |
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Preference number: 4 (lower is better) Translates to: KRPHYHLDAPNPAAGHSLPHTQE*LCLTAC Trigger: GCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGG...CAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGGCCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | CTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCGCACCCTCCAGTCTCTaGTCTCCCAGTAGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LIDVLTTKERGHTIILMPAPSSL*SPSSRA Trigger: TGCCCTGCTACTGGGAGAGCAGAGACTGGAGGGTGC...GGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | GGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGGAGCACCCTCCAGTCTCTaGTCTCCCAGTAGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GRKAQKSGETYRCADHQGAPSSL*SPSSRA Trigger: TGCCCTGCTACTGGGAGAGCAGAGACTGGAGGGTGC...TCCTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | CCAGCAGGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACGGCAAGGAAGACCAGTaGAAGCAGCCCCAGCACCAA | + |
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Preference number: 4 (lower is better) Translates to: PAGRKAQKSGETYRCADHGKEDQ*KQPQHQ Trigger: TTGGTGCTGGGGCTGCTTGCACTGGTCTTCCTTGCC...GTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCCTGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR CCA 90 bp | CCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCCTGACGACGGTGGAGGCTaGAATCTCCTTTCTATGGGT | + |
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Preference number: 4 (lower is better) Translates to: PHYHLDAPNPAAGHSLPPDDGGG*NLLSMG Trigger: ACCCATAGAAAGGAGATTCCAGCCTCCACCGTCGTC...AGGAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217748.2 |
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| CDS-3UTR TCA 90 bp | ATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCCAAAGGACATGCTGCAGGTaGTCTGGAGGGATGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: IDVLTTKERGHTIILMPQRTCCR*SGGMCP Trigger: TGGGCACATCCCTCCAGATCACCTGCAGCATGTCCT...TTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | CACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCTGTGTCTGACAGCATaGCCCGTACAGAGAGGATAC | + |
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Preference number: 4 (lower is better) Translates to: HQGKRPHYHLDAPNPAAGLCLTA*PVQRGY Trigger: GTATCCTCTCTGTACGGGGCATGCTGTCAGACACAG...ACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | CTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCGAGACTGTTCGGGTCTaGAGGCCAGATGTTGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LIDVLTTKERGHTIILMPETVRV*RPDVVG Trigger: GCCCACAACATCTGGCCTGCAGACCCGAACAGTCTC...GGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | GTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCCAAATCCTGCACCACCAGCTGGTCTaGGAAGGCATACACAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: VLTTKERGHTIILMPQILHHQLV*EGIHKD Trigger: ATCCTTGTGTATGCCTTCCCAGACCAGCTGGTGGTG...CAGGATTTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | AAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCGTGCAGGACACCACCTaGTCCTGTCCAGGTACAAGG | + |
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Preference number: 4 (lower is better) Translates to: KPRSQEKLIDVLTTKERGVQDTT*SCPGTR Trigger: CCTTGTACCTGGACAGGACCAGGTGGTGTCCTGCAC...GCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | CAGGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGCTCCTCTTCTTGCTCTaGTTCCAGGGCTTGGGCACC | + |
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Preference number: 4 (lower is better) Translates to: QAEKPRSQEKLIDVLTTKLLFLL*FQGLGT Trigger: GGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAG...CTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR TCA 90 bp | ACTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCAGGACATGCTGCAGGTaGTCTGGAGGGATGTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: TYRCADHQGKRPHYHLDARTCCR*SGGMCP Trigger: TGGGCACATCCCTCCAGATCACCTGCAGCATGTCCT...GGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | ATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCCAACCACACACACAGGAGTaGCTGTGTCTGACAGCATGC | + |
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Preference number: 4 (lower is better) Translates to: IDVLTTKERGHTIILMPQPHTQE*LCLTAC Trigger: GCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGG...TTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | TTATTTAGCTCTGGGCCAGCAGGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTTGTGGGCCGTaGAGGACACCACCTGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LFSSGPAGRKAQKSGETYRCCGP*RTPPGP Trigger: AGGACCAGGTGGTGTCCTGCACGGCCCACAACATCT...ATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCCTGCTGGCCCAGAGCTAAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR GCA 90 bp | CACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCCTTTGTATCTCCTCTTCTTaGTCTGGTTCCAGGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: HTIILMPQILQLVTLCLLCISSS*SGSRAW Trigger: CCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACA...AAGGAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | AAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCATCTTCACGGAGTGCTaGAAGCTTCGACTCCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: KPRSQEKLIDVLTTKERGIFTEC*KLRLPQ Trigger: CTGCGGGAGTCGAAGCTTCCAGCACTCCGTGAAGAT...GCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | GAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGGCAAGGAAGACCAGTaGAAGCAGCCCCAGCACCAA | + |
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Preference number: 4 (lower is better) Translates to: ETYRCADHQGKRPHYHLDGKEDQ*KQPQHQ Trigger: TTGGTGCTGGGGCTGCTTGCACTGGTCTTCCTTGCC...ATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CCA 90 bp | GGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGGAGAATTCGGGGTCACCTaGCCAGGAACATACAGATTG | + |
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Preference number: 4 (lower is better) Translates to: GRKAQKSGETYRCADHQGEFGVT*PGTYRL Trigger: CAATCTGTATGTTCCTGGCCAGGTGACCCCGAATTC...TCCTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR CCA 90 bp | GAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATATCTTCACGGAGTGCTaGAAGCTTCGACTCCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: ETYRCADHQGKRPHYHLDIFTEC*KLRLPQ Trigger: CTGCGGGAGTCGAAGCTTCCAGCACTCCGTGAAGAT...ATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR GCA 90 bp | GAGAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGTGTATCTCCTCTTCTTaGTCTGGTTCCAGGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: EKLIDVLTTKERGHTIILCISSS*SGSRAW Trigger: CCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACA...CAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 90 bp | GGAACATACAGATTGGTCACCTGCCCGCCAGGGTCCTGGCGGCACTaGAACCAGCCCTCTACCATGGGACCTGGGGGCAGCACGCTTAGC | + |
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Preference number: 5 (lower is better) Translates to: GTYRLVTCPPGSWRH*NQPSTMGPGGSTLS Trigger: GCTAAGCGTGCTGCCCCCAGGTCCCATGGTAGAGGGCTGGTTCCAGTGCCGCCAGGACCCTGGCGGGCAGGTGACCAATCTGTATGTTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 90 bp | GGGAGGGTCTGTACACTGCCCAAGCTGGTGTCCAGACCACGCCAGTaGACCCGGGCTACACCCTCGTCACAGGACATGCTGCAGGTGATC | + |
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Preference number: 5 (lower is better) Translates to: GRVCTLPKLVSRPRQ*TRATPSSQDMLQVI Trigger: GATCACCTGCAGCATGTCCTGTGACGAGGGTGTAGCCCGGGTGCACTGGCGTGGTCTGGACACCAGCTTGGGCAGTGTACAGACCCTCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 90 bp | TGCCCCGTACAGAGAGGATACTGCTGCCTGGGAGGGTCTGTACACTaGCCAAGCTGGTGTCCAGACCACGCCAGTGCACCCGGGCTACAC | + |
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Preference number: 5 (lower is better) Translates to: CPVQRGYCCLGGSVH*PSWCPDHASAPGLH Trigger: GTGTAGCCCGGGTGCACTGGCGTGGTCTGGACACCAGCTTGGGCAGTGTACAGACCCTCCCAGGCAGCAGTATCCTCTCTGTACGGGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 90 bp | TTCGGGTCTGCAGGCCAGATGTTGTGGGCCGTGCAGGACACCACCTaGTCCTGTCCAGGTACAAGGAACTCCGGGGACACCACCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: FGSAGQMLWAVQDTT*SCPGTRNSGDTTSW Trigger: CCAGCTGGTGGTGTCCCCGGAGTTCCTTGTACCTGGACAGGACCAGGTGGTGTCCTGCACGGCCCACAACATCTGGCCTGCAGACCCGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS TCA 90 bp | GCCAGTGCACCCGGGCTACACCCTCGTCACAGGACATGCTGCAGGTaGTCTGGAGGGATGTGCCCATGGCCACAGCTACCTCAGACTCAG | + |
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Preference number: 5 (lower is better) Translates to: ASAPGLHPRHRTCCR*SGGMCPWPQLPQTQ Trigger: CTGAGTCTGAGGTAGCTGTGGCCATGGGCACATCCCTCCAGATCACCTGCAGCATGTCCTGTGACGAGGGTGTAGCCCGGGTGCACTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS TCA 90 bp | GCTTCGACTCCCGCAGGAGCCCACACACACAGGAGTGCCTGTGTCTaGCAGCATGCCCCGTACAGAGAGGATACTGCTGCCTGGGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: ASTPAGAHTHRSACV*QHAPYREDTAAWEG Trigger: ACCCTCCCAGGCAGCAGTATCCTCTCTGTACGGGGCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGGGCTCCTGCGGGAGTCGAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 90 bp | CAAAGGAGAGACTGTTCGGGTCTGCAGGCCAGATGTTGTGGGCCGTaGAGGACACCACCTGGTCCTGTCCAGGTACAAGGAACTCCGGGG | + |
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Preference number: 5 (lower is better) Translates to: QRRDCSGLQARCCGP*RTPPGPVQVQGTPG Trigger: CCCCGGAGTTCCTTGTACCTGGACAGGACCAGGTGGTGTCCTGCACGGCCCACAACATCTGGCCTGCAGACCCGAACAGTCTCTCCTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 90 bp | GGCGGTAGGCAAGGAAGACCAGTGCAAGCAGCCCCAGCACCAAGCTaGCAATCCATAGGACGACGGTGGAGGAGGAATTCGGGGTCACCT | + |
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Preference number: 5 (lower is better) Translates to: GGRQGRPVQAAPAPS*QSIGRRWRRNSGSP Trigger: AGGTGACCCCGAATTCCTCCTCCACCGTCGTCCTATGGATTGGCAGCTTGGTGCTGGGGCTGCTTGCACTGGTCTTCCTTGCCTACCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CCA 90 bp | CTGCCAATCCATAGGACGACGGTGGAGGAGGAATTCGGGGTCACCTaGCCAGGAACATACAGATTGGTCACCTGCCCGCCAGGGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LPIHRTTVEEEFGVT*PGTYRLVTCPPGSW Trigger: CCAGGACCCTGGCGGGCAGGTGACCAATCTGTATGTTCCTGGCCAGGTGACCCCGAATTCCTCCTCCACCGTCGTCCTATGGATTGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 90 bp | AGTGCTGGAAGCTTCGACTCCCGCAGGAGCCCACACACACAGGAGTaGCTGTGTCTGACAGCATGCCCCGTACAGAGAGGATACTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SAGSFDSRRSPHTQE*LCLTACPVQRGYCC Trigger: GCAGCAGTATCCTCTCTGTACGGGGCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGGGCTCCTGCGGGAGTCGAAGCTTCCAGCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 90 bp | ACCACCAGCTGGTCTGGGAAGGCATACACAAGGATCTTCACGGAGTaGTGGAAGCTTCGACTCCCGCAGGAGCCCACACACACAGGAGTG | + |
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Preference number: 5 (lower is better) Translates to: TTSWSGKAYTRIFTE*WKLRLPQEPTHTGV Trigger: CACTCCTGTGTGTGTGGGCTCCTGCGGGAGTCGAAGCTTCCAGCACTCCGTGAAGATCCTTGTGTATGCCTTCCCAGACCAGCTGGTGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 90 bp | ACCAGCTGGTCTGGGAAGGCATACACAAGGATCTTCACGGAGTGCTaGAAGCTTCGACTCCCGCAGGAGCCCACACACACAGGAGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: TSWSGKAYTRIFTEC*KLRLPQEPTHTGVP Trigger: AGGCACTCCTGTGTGTGTGGGCTCCTGCGGGAGTCGAAGCTTCCAGCACTCCGTGAAGATCCTTGTGTATGCCTTCCCAGACCAGCTGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 90 bp | CCCTCAGCCTCTTGTATCTCCTCTTCTTGCTCTGGTTCCAGGGCTTaGGCACCCTCCAGTCTCTGCTCTCCCAGTAGCAGGGCAAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: PSASCISSSCSGSRA*APSSLCSPSSRAKE Trigger: CTCCTTTGCCCTGCTACTGGGAGAGCAGAGACTGGAGGGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 90 bp | ATTCGGAACAGTGGTGTGCCCTCAGCCTCTTGTATCTCCTCTTCTTaGTCTGGTTCCAGGGCTTGGGCACCCTCCAGTCTCTGCTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: IRNSGVPSASCISSS*SGSRAWAPSSLCSP Trigger: GGGAGAGCAGAGACTGGAGGGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACACCACTGTTCCGAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 90 bp | GGCGGTAGGCAAGGAAGACCAGTGCAAGCAGCCCCAGCACCAAGCTaGCAATCCATAGGACGACGGTGGAGGCTGGAATCTCCTTTCTAT | + |
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Preference number: 5 (lower is better) Translates to: GGRQGRPVQAAPAPS*QSIGRRWRLESPFY Trigger: ATAGAAAGGAGATTCCAGCCTCCACCGTCGTCCTATGGATTGGCAGCTTGGTGCTGGGGCTGCTTGCACTGGTCTTCCTTGCCTACCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217748.2 |
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| CDS CCA 90 bp | GTCCTGTCCAGGTACAAGGAACTCCGGGGACACCACCAGCTGGTCTaGGAAGGCATACACAAGGATCTTCACGGAGTGCTGGAAGCTTCG | + |
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Preference number: 5 (lower is better) Translates to: VLSRYKELRGHHQLV*EGIHKDLHGVLEAS Trigger: CGAAGCTTCCAGCACTCCGTGAAGATCCTTGTGTATGCCTTCCCAGACCAGCTGGTGGTGTCCCCGGAGTTCCTTGTACCTGGACAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CAA 90 bp | CTGGGCCAGCAGGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGGGTAGGGTGGTGATGTaGAGCCCAGTGGAGACTGCC | + |
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Preference number: 5 (lower is better) Translates to: LGQQAEKPRSQEKLIDVLGRVVM*SPVETA Trigger: GGCAGTCTCCACTGGGCTCAACATCACCACCCTACC...CAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCCTGCTGGCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR CAA 90 bp | GGCCACACTATCATCTTGATGCCCCAAATCCTGCAGCTGGTCACTCTCTGCCTCTTGTATCTCCTCTTCTaGCTCTGGTTCCAGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: GHTIILMPQILQLVTLCLLYLLF*LWFQGL Trigger: CAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAA...GAGGCAGAGAGTGACCAGCTGCAGGATTTGGGGCATCAAGATGATAGTGTGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CAA 90 bp | AAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCTGGGTCAGCACCAGTTaGGGCAGCTGCATGGTGACC | + |
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Preference number: 5 (lower is better) Translates to: KPRSQEKLIDVLTTKERGWVSTS*GSCMVT Trigger: GGTCACCATGCAGCTGCCCAAACTGGTGCTGACCCA...GCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CAA 90 bp | TTATTTAGCTCTGGGCCAGCAGGCAGAAAAGCCCAGAAGTCAGGAGAAACTTATCCCTCTTGTGGTAGGTaGCCAGGTCGCCAGGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LFSSGPAGRKAQKSGETYPSCGR*PGRQEP Trigger: TGGCTCCTGGCGACCTGGCAACCTACCACAAGAGGG...ATAAGTTTCTCCTGACTTCTGGGCTTTTCTGCCTGCTGGCCCAGAGCTAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS-3UTR CAA 90 bp | GTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATGCCCCAAATCCTGTTGTATCTCCTCTTCTaGCTCTGGTTCCAGGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: VLTTKERGHTIILMPQILLYLLF*LWFQGL Trigger: CAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAA...CAGGATTTGGGGCATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CAA 90 bp | AAGCCCAGAAGTCAGGAGAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCTGTGCCCTCAGCCTCTaGTATCTCCTCTTCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: KPRSQEKLIDVLTTKERGCALSL*YLLFLL Trigger: GAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACA...GCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTCTCCTGACTTCTGGGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS-3UTR CAA 90 bp | GAAACTTATAGATGTGCTGACCACCAAGGAAAGAGGCCACACTATCATCTTGATTGGGTCAGCACCAGTTaGGGCAGCTGCATGGTGACC | + |
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Preference number: 5 (lower is better) Translates to: ETYRCADHQGKRPHYHLDWVSTS*GSCMVT Trigger: GGTCACCATGCAGCTGCCCAAACTGGTGCTGACCCA...ATCAAGATGATAGTGTGGCCTCTTTCCTTGGTGGTCAGCACATCTATAAGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 72 bp | CAGGGTCCTGGCGGCACTGGAACCAGCCCTCTACCATaGGACCTGGGGGCAGCACGCTTAGCCATGCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: QGPGGTGTSPLP*DLGAARLAMPG Trigger: CCCAGGCATGGCTAAGCGTGCTGCCCCCAGGTCCCATGGTAGAGGGCTGGTTCCAGTGCCGCCAGGACCCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CCA 72 bp | AGATTGGTCACCTGCCCGCCAGGGTCCTGGCGGCACTaGAACCAGCCCTCTACCATGGGACCTGGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RLVTCPPGSWRH*NQPSTMGPGGS Trigger: GCTGCCCCCAGGTCCCATGGTAGAGGGCTGGTTCCAGTGCCGCCAGGACCCTGGCGGGCAGGTGACCAATCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 72 bp | CCATGCCTGGGCCCCAGCCTCCCTCTTGTGGTAGGTTaGCAGGTCGCCAGGAGCCAAGGTCCAGCGCACAGT | + |
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Preference number: 6 (lower is better) Translates to: PCLGPSLPLVVG*QVARSQGPAHS Trigger: ACTGTGCGCTGGACCTTGGCTCCTGGCGACCTGGCAACCTACCACAAGAGGGAGGCTGGGGCCCAGGCATGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 72 bp | GGGGTCACCTGGCCAGGAACATACAGATTGGTCACCTaGCCGCCAGGGTCCTGGCGGCACTGGAACCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: GVTWPGTYRLVT*PPGSWRHWNQP Trigger: GGGCTGGTTCCAGTGCCGCCAGGACCCTGGCGGGCAGGTGACCAATCTGTATGTTCCTGGCCAGGTGACCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CCA 72 bp | GCAGGCCAGATGTTGTGGGCCGTGCAGGACACCACCTaGTCCTGTCCAGGTACAAGGAACTCCGGGGACACC | + |
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Preference number: 6 (lower is better) Translates to: AGQMLWAVQDTT*SCPGTRNSGDT Trigger: GGTGTCCCCGGAGTTCCTTGTACCTGGACAGGACCAGGTGGTGTCCTGCACGGCCCACAACATCTGGCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CAA 72 bp | GAGGAATTCGGGGTCACCTGGCCAGGAACATACAGATaGGTCACCTGCCCGCCAGGGTCCTGGCGGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: EEFGVTWPGTYR*VTCPPGSWRHW Trigger: CCAGTGCCGCCAGGACCCTGGCGGGCAGGTGACCAATCTGTATGTTCCTGGCCAGGTGACCCCGAATTCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS TCA 72 bp | CCCGGGCTACACCCTCGTCACAGGACATGCTGCAGGTaGTCTGGAGGGATGTGCCCATGGCCACAGCTACCT | + |
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Preference number: 6 (lower is better) Translates to: PGLHPRHRTCCR*SGGMCPWPQLP Trigger: AGGTAGCTGTGGCCATGGGCACATCCCTCCAGATCACCTGCAGCATGTCCTGTGACGAGGGTGTAGCCCGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS TCA 72 bp | CCCGCAGGAGCCCACACACACAGGAGTGCCTGTGTCTaGCAGCATGCCCCGTACAGAGAGGATACTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PAGAHTHRSACV*QHAPYREDTAA Trigger: GGCAGCAGTATCCTCTCTGTACGGGGCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGGGCTCCTGCGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 72 bp | CAGAGAGGATACTGCTGCCTGGGAGGGTCTGTACACTaGCCAAGCTGGTGTCCAGACCACGCCAGTGCACCC | + |
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Preference number: 6 (lower is better) Translates to: QRGYCCLGGSVH*PSWCPDHASAP Trigger: GGGTGCACTGGCGTGGTCTGGACACCAGCTTGGGCAGTGTACAGACCCTCCCAGGCAGCAGTATCCTCTCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 72 bp | GGAACATACAGATTGGTCACCTGCCCGCCAGGGTCCTaGCGGCACTGGAACCAGCCCTCTACCATGGGACCT | + |
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Preference number: 6 (lower is better) Translates to: GTYRLVTCPPGS*RHWNQPSTMGP Trigger: AGGTCCCATGGTAGAGGGCTGGTTCCAGTGCCGCCAGGACCCTGGCGGGCAGGTGACCAATCTGTATGTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CCA 72 bp | AGGAATTCGGGGTCACCTGGCCAGGAACATACAGATTaGTCACCTGCCCGCCAGGGTCCTGGCGGCACTGGA | + |
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Preference number: 6 (lower is better) Translates to: RNSGSPGQEHTD*SPARQGPGGTG Trigger: TCCAGTGCCGCCAGGACCCTGGCGGGCAGGTGACCAATCTGTATGTTCCTGGCCAGGTGACCCCGAATTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 72 bp | AGCCCACACACACAGGAGTGCCTGTGTCTGACAGCATaGCCCGTACAGAGAGGATACTGCTGCCTGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: SPHTQECLCLTA*PVQRGYCCLGG Trigger: CCCTCCCAGGCAGCAGTATCCTCTCTGTACGGGGCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 72 bp | AGCTTCGACTCCCGCAGGAGCCCACACACACAGGAGTaGCTGTGTCTGACAGCATGCCCCGTACAGAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SFDSRRSPHTQE*LCLTACPVQRG Trigger: TCCTCTCTGTACGGGGCATGCTGTCAGACACAGGCACTCCTGTGTGTGTGGGCTCCTGCGGGAGTCGAAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 72 bp | GACTGTTCGGGTCTGCAGGCCAGATGTTGTGGGCCGTaGAGGACACCACCTGGTCCTGTCCAGGTACAAGGA | + |
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Preference number: 6 (lower is better) Translates to: DCSGLQARCCGP*RTPPGPVQVQG Trigger: TCCTTGTACCTGGACAGGACCAGGTGGTGTCCTGCACGGCCCACAACATCTGGCCTGCAGACCCGAACAGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CAA 72 bp | GCAAAGGAGAGACTGTTCGGGTCTGCAGGCCAGATGTaGTGGGCCGTGCAGGACACCACCTGGTCCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: AKERLFGSAGQM*WAVQDTTWSCP Trigger: TGGACAGGACCAGGTGGTGTCCTGCACGGCCCACAACATCTGGCCTGCAGACCCGAACAGTCTCTCCTTTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 72 bp | CATAGGACGACGGTGGAGGAGGAATTCGGGGTCACCTaGCCAGGAACATACAGATTGGTCACCTGCCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: HRTTVEEEFGVT*PGTYRLVTCPP Trigger: TGGCGGGCAGGTGACCAATCTGTATGTTCCTGGCCAGGTGACCCCGAATTCCTCCTCCACCGTCGTCCTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CAA 90 bp | CCGCCAGCGTTGTGTCATTCGGAACAGTGGTGTGCCCTCAGCCTCTaGTATCTCCTCTTCTTGCTCTGGTTCCAGGGCTTGGGCACCCTC | + |
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Preference number: 6 (lower is better) Translates to: PPALCHSEQWCALSL*YLLFLLWFQGLGTL Trigger: GAGGGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACACCACTGTTCCGAATGACACAACGCTGGCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CAA 90 bp | GGGCTAAGCTTGGGGTATGGAGGGGCAGAAGGTAGGGTGGTGATGTaGAGCCCAGTGGAGACTGCCTCAGCAGTACTTGATGAGGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: GLSLGYGGAEGRVVM*SPVETASAVLDEVR Trigger: CCTGACCTCATCAAGTACTGCTGAGGCAGTCTCCACTGGGCTCAACATCACCACCCTACCTTCTGCCCCTCCATACCCCAAGCTTAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 72 bp | AGTGGTGTGCCCTCAGCCTCTTGTATCTCCTCTTCTTaGTCTGGTTCCAGGGCTTGGGCACCCTCCAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SGVPSASCISSS*SGSRAWAPSSL Trigger: GAGACTGGAGGGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACACCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS GCA 72 bp | CAAGGAAGACCAGTGCAAGCAGCCCCAGCACCAAGCTaGCAATCCATAGGACGACGGTGGAGGAGGAATTCG | + |
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Preference number: 6 (lower is better) Translates to: QGRPVQAAPAPS*QSIGRRWRRNS Trigger: CGAATTCCTCCTCCACCGTCGTCCTATGGATTGGCAGCTTGGTGCTGGGGCTGCTTGCACTGGTCTTCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 72 bp | CAAGGAAGACCAGTGCAAGCAGCCCCAGCACCAAGCTaGCAATCCATAGGACGACGGTGGAGGCTGGAATCT | + |
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Preference number: 6 (lower is better) Translates to: QGRPVQAAPAPS*QSIGRRWRLES Trigger: AGATTCCAGCCTCCACCGTCGTCCTATGGATTGGCAGCTTGGTGCTGGGGCTGCTTGCACTGGTCTTCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000217748.2 |
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| CDS CCA 72 bp | TGTGCCCTCAGCCTCTTGTATCTCCTCTTCTTGCTCTaGTTCCAGGGCTTGGGCACCCTCCAGTCTCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: CALSLLYLLFLL*FQGLGTLQSLL Trigger: GAGCAGAGACTGGAGGGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CAA 72 bp | CAAGGTCCCTCAGAGCTCAGAGTCCTAGGGCTAAGCTaGGGGTATGGAGGGGCAGAAGGTAGGGTGGTGATG | + |
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Preference number: 6 (lower is better) Translates to: QGPSELRVLGLS*GYGGAEGRVVM Trigger: CATCACCACCCTACCTTCTGCCCCTCCATACCCCAAGCTTAGCCCTAGGACTCTGAGCTCTGAGGGACCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CCA 72 bp | AGGTACAAGGAACTCCGGGGACACCACCAGCTGGTCTaGGAAGGCATACACAAGGATCTTCACGGAGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: RYKELRGHHQLV*EGIHKDLHGVL Trigger: CAGCACTCCGTGAAGATCCTTGTGTATGCCTTCCCAGACCAGCTGGTGGTGTCCCCGGAGTTCCTTGTACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 72 bp | TGTCCAGGTACAAGGAACTCCGGGGACACCACCAGCTaGTCTGGGAAGGCATACACAAGGATCTTCACGGAG | + |
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Preference number: 6 (lower is better) Translates to: CPGTRNSGDTTS*SGKAYTRIFTE Trigger: CTCCGTGAAGATCCTTGTGTATGCCTTCCCAGACCAGCTGGTGGTGTCCCCGGAGTTCCTTGTACCTGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 72 bp | TCTTGTATCTCCTCTTCTTGCTCTGGTTCCAGGGCTTaGGCACCCTCCAGTCTCTGCTCTCCCAGTAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SCISSSCSGSRA*APSSLCSPSSR Trigger: CCTGCTACTGGGAGAGCAGAGACTGGAGGGTGCCCAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CAA 72 bp | TTGGGGTATGGAGGGGCAGAAGGTAGGGTGGTGATGTaGAGCCCAGTGGAGACTGCCTCAGCAGTACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: LGYGGAEGRVVM*SPVETASAVLD Trigger: ATCAAGTACTGCTGAGGCAGTCTCCACTGGGCTCAACATCACCACCCTACCTTCTGCCCCTCCATACCCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS GCA 72 bp | GTAACCGCCAGCGTTGTGTCATTCGGAACAGTGGTGTaGCCTCAGCCTCTTGTATCTCCTCTTCTTGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: VTASVVSFGTVV*PQPLVSPLLAL Trigger: CAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACACCACTGTTCCGAATGACACAACGCTGGCGGTTAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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| CDS CCA 72 bp | GAGGTCTGGCTCTGTAGTACTGGAATCTCCTTTCTATaGGTCAGCACCAGTTTGGGCAGCTGCATGGTGACC | + |
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Preference number: 6 (lower is better) Translates to: EVWLCSTGISFL*VSTSLGSCMVT Trigger: GGTCACCATGCAGCTGCCCAAACTGGTGCTGACCCATAGAAAGGAGATTCCAGTACTACAGAGCCAGACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020554.8 |
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| CDS CAA 72 bp | TTGTGTCATTCGGAACAGTGGTGTGCCCTCAGCCTCTaGTATCTCCTCTTCTTGCTCTGGTTCCAGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LCHSEQWCALSL*YLLFLLWFQGL Trigger: CAAGCCCTGGAACCAGAGCAAGAAGAGGAGATACAAGAGGCTGAGGGCACACCACTGTTCCGAATGACACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020554.8 ENSMUST00000217748.2 |
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