Pregenerated sensors for MAD2L1BP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034509Ensembl transcript IDs: ENSMUST00000171172.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAATTATCACAGCCCCAGCCACACACCATCAGTCAGCAGGAAGTCTaGGGAGAGAAGGCACATGGCCAGGACAGAGCCTTCCTCCTCCCT | + |
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Preference number: 1 (lower is better) Translates to: QLSQPQPHTISQQEV*GEKAHGQDRAFLLP Trigger: AGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCCCAGACTTCCTGCTGACTGATGGTGTGTGGCTGGGGCTGTGATAATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR GCA 90 bp | CATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGATGGGTaGCCTAGCATGAGAATGGGAGAGAATTCAGCCATTGTCCTTATA | + |
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Preference number: 1 (lower is better) Translates to: HGQDRAFLLPQWEDG*PSMRMGENSAIVLI Trigger: TATAAGGACAATGGCTGAATTCTCTCCCATTCTCATGCTAGGGCACCCATCTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR-3UTR TCA 90 bp | ACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCAGGGGCCTCTGGGAATGGGTGCCCTAGCATaGGAATGGGAGAGAATTCAG | + |
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Preference number: 2 (lower is better) Translates to: TALLSTPKQILLAQGPLGMGALA*EWERIQ Trigger: CTGAATTCTCTCCCATTCTCATGCTAGGGCACCCAT...TCCCAGAGGCCCCTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR-3UTR CCA 90 bp | TTCGGGGGACTTTGCTTGATGACAATTATCACAGCCCCAGCCACACACCATCAGGGGAGAGAAGGCACATaGCCAGGACAGAGCCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: FGGLCLMTIITAPATHHQGREGT*PGQSLP Trigger: AGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCC...CTGATGGTGTGTGGCTGGGGCTGTGATAATTGTCATCAAGCAAAGTCCCCCGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR-3UTR GCA 90 bp | CCTCCATTATTAGAGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGCAGTGGGAAGATGGGTaGCCTAGCATGAGAATGGGA | + |
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Preference number: 2 (lower is better) Translates to: PPLLEGSTDTALLSTPKQQWEDG*PSMRMG Trigger: TCCCATTCTCATGCTAGGGCACCCATCTTCCCACTG...CTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCTCTAATAATGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR CCA 72 bp | CAGCCCCAGCCACACACCATCAGTCAGCAGGAAGTCTaGGGAGAGAAGGCACATGGCCAGGACAGAGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: QPQPHTISQQEV*GEKAHGQDRAF Trigger: GAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCCCAGACTTCCTGCTGACTGATGGTGTGTGGCTGGGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR CCA 72 bp | GCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTaGGAAGATGGGTGCCCTAGCATGAGAATGGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: AHGQDRAFLLPQ*EDGCPSMRMGE Trigger: CTCTCCCATTCTCATGCTAGGGCACCCATCTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR CCA 72 bp | ACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTaGCGCAGGGGCCTCTGGGAGCCAATCACTGATTCG | + |
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Preference number: 3 (lower is better) Translates to: TQPCFLLPNRSS*RRGLWEPITDS Trigger: CGAATCAGTGATTGGCTCCCAGAGGCCCCTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR TCA 72 bp | ATCCTCCTGGCGCAGGGGCCTCTGGGAGCCAATCACTaGTTCGGGGGACTTTGCTTGATGACAATTATCACA | + |
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Preference number: 3 (lower is better) Translates to: ILLAQGPLGANH*FGGLCLMTIIT Trigger: TGTGATAATTGTCATCAAGCAAAGTCCCCCGAATCAGTGATTGGCTCCCAGAGGCCCCTGCGCCAGGAGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR GCA 72 bp | GACAGAGCCTTCCTCCTCCCTCAGTGGGAAGATGGGTaGCCTAGCATGAGAATGGGAGAGAATTCAGCCATT | + |
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Preference number: 3 (lower is better) Translates to: DRAFLLPQWEDG*PSMRMGENSAI Trigger: AATGGCTGAATTCTCTCCCATTCTCATGCTAGGGCACCCATCTTCCCACTGAGGGAGGAGGAAGGCTCTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR TCA 72 bp | TCCTCCTCCCTCAGTGGGAAGATGGGTGCCCTAGCATaGGAATGGGAGAGAATTCAGCCATTGTCCTTATAC | + |
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Preference number: 3 (lower is better) Translates to: SSSLSGKMGALA*EWERIQPLSLY Trigger: GTATAAGGACAATGGCTGAATTCTCTCCCATTCTCATGCTAGGGCACCCATCTTCCCACTGAGGGAGGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR TCA 72 bp | CAGGGAAGGACCACCTCCATTATTAGAGGGATCTACTaGCACAGCCTTGCTTTCTACTCCCAAACAGATCCT | + |
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Preference number: 3 (lower is better) Translates to: QGRTTSIIRGIY*HSLAFYSQTDP Trigger: AGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCTCTAATAATGGAGGTGGTCCTTCCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | GGGGAGAGAAGGCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGCGGCACCAGGTCTCTTaGGCAAAAGGGCTCCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GERRHMARTEPSSSLSGKRHQVS*AKGLRR Trigger: CCTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCCG...CTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | AGAGAAGGCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGATGGAGGGCTCCGCAGGATTaGAAGGTTCCTGGGCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: REGTWPGQSLPPPSVGRWRAPQD*KVPGLA Trigger: CGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCT...CCATCTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | GGGAGAGAAGGCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGATGGCAGCAGTCTTCCTaGCTCACAGGCCCGGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: GREGTWPGQSLPPPSVGRWQQSS*LTGPGN Trigger: GTTTCCCGGGCCTGTGAGCCAGGAAGACTGCTGCCA...TCTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR TCA 90 bp | ACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCAGGGGCCTCTGGTCCGCCAAAGCCTGCTaGCACTTCCTGTTCCTCGCC | + |
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Preference number: 4 (lower is better) Translates to: TQPCFLLPNRSSWRRGLWSAKAC*HFLFLA Trigger: GGCGAGGAACAGGAAGTGTCAGCAGGCTTTGGCGGA...CCAGAGGCCCCTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR TCA 90 bp | GGCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGATGGGTGCCCCCAAATGTAATCCTCTaGAGCCATGGCTGGGACGGA | + |
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Preference number: 4 (lower is better) Translates to: GTWPGQSLPPPSVGRWVPPNVIL*SHGWDG Trigger: TCCGTCCCAGCCATGGCTTCAGAGGATTACATTTGG...GGGCACCCATCTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | ACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCAGGGGCCTCTGGGTTTGTGGCCCCGGCTaGGCACCCGGTAGTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: TQPCFLLPNRSSWRRGLWVCGPG*APGSSV Trigger: AACTGAACTACCGGGTGCCCAGCCGGGGCCACAAAC...CCAGAGGCCCCTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR TCA 90 bp | GACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCAGGGGCCTCTGCCTGGGCTGGCGGGATaGCAGTCTCAAGATCTACTT | + |
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Preference number: 4 (lower is better) Translates to: DTALLSTPKQILLAQGPLPGLAG*QSQDLL Trigger: AAGTAGATCTTGAGACTGTCATCCCGCCAGCCCAGG...CAGAGGCCCCTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR TCA 90 bp | GGGAGAGAAGGCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGAGGAAGGTCTGCCACATaGCAGTGTCACGGTGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: GREGTWPGQSLPPPSVGRGRSAT*QCHGEF Trigger: AAACTCACCGTGACACTGTCATGTGGCAGACCTTCC...TCTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR GCA 90 bp | TCAGTCAGCAGGAAGTCTGGGGAGAGAAGGCACATGGCCAGGACAGAGCCTTCCCCAAGCTTTCTTCCTTaGTGTGTCCTCTGCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SVSRKSGERRHMARTEPSPSFLP*CVLCLG Trigger: CCCCAGGCAGAGGACACAGCAAGGAAGAAAGCTTGG...GGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCCCAGACTTCCTGCTGACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | AGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCGCTGTGTTCAGGCCCTaGTCCACACCGAATGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: RDLLTQPCFLLPNRSSWRAVFRP*STPNGA Trigger: GGCTCCATTCGGTGTGGACCAGGGCCTGAACACAGC...GCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR GCA 90 bp | AGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCCCTTGCTGTGTCCTCTaGCTGGGGAACTTTCCGGTA | + |
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Preference number: 4 (lower is better) Translates to: RDLLTQPCFLLPNRSSWRPCCVL*LGNFPV Trigger: TACCGGAAAGTTCCCCAGGCAGAGGACACAGCAAGG...GCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR GCA 90 bp | CACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCAGGGGCCTCTGGGCGCTGGTACAGGATATaGTTGAGAAGTTCACAAGTA | + |
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Preference number: 4 (lower is better) Translates to: HSLAFYSQTDPPGAGASGRWYRI*LRSSQV Trigger: TACTTGTGAACTTCTCAAGCATATCCTGTACCAGCG...CCCAGAGGCCCCTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | CACACACCATCAGTCAGCAGGAAGTCTGGGGAGAGAAGGCACATGGCCAGGACAAAGGATCAACACTTGTaGTACGAGTGTCCGGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: HTPSVSRKSGERRHMARTKDQHL*YECPGK Trigger: TTTGCCCGGACACTCGTACCACAAGTGTTGATCCTT...TGTCCTGGCCATGTGCCTTCTCTCCCCAGACTTCCTGCTGACTGATGGTGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | AGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGGCGCCTGCAGTTCGCTAAATaGATCCGCCAAGAAGATGGC | + |
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Preference number: 4 (lower is better) Translates to: RDLLTQPCFLLPNRSSWRLQFAK*IRQEDG Trigger: GCCATCTTCTTGGCGGATCCATTTAGCGAACTGCAG...GCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | ATTATCATCCTGATAACAGTTCTGAAAATCCATAGCATGAAGCAGGGAAGGACCGTCACGGTGAGTTTGTaGCCCCGGCTGGGCACCCGG | + |
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Preference number: 4 (lower is better) Translates to: IIILITVLKIHSMKQGRTVTVSL*PRLGTR Trigger: CCGGGTGCCCAGCCGGGGCCACAAACTCACCGTGAC...GGTCCTTCCCTGCTTCATGCTATGGATTTTCAGAACTGTTATCAGGATGATAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| 3UTR CAA 72 bp | CCACCTCCATTATTAGAGGGATCTACTGACACAGCCTaGCTTTCTACTCCCAAACAGATCCTCCTGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: PPPLLEGSTDTA*LSTPKQILLAQ Trigger: CTGCGCCAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCTCTAATAATGGAGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR TCA 90 bp | TTAGAGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGCCAAGAAGATGGCTCTaGAGAGACGACGCAAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: LEGSTDTALLSTPKQILLPRRWL*RDDASK Trigger: CTTGCTTGCGTCGTCTCTTCAGAGCCATCTTCTTGG...CAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCTCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR TCA 90 bp | ATTATCATCCTGATAACAGTTCTGAAAATCCATAGCATGAAGCAGGGAAGGACCATGACAGTGTCACGGTaGGTTTGTGGCCCCGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: IIILITVLKIHSMKQGRTMTVSR*VCGPGW Trigger: CCAGCCGGGGCCACAAACTCACCGTGACACTGTCAT...GGTCCTTCCCTGCTTCATGCTATGGATTTTCAGAACTGTTATCAGGATGATAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR GCA 90 bp | CAATTATCACAGCCCCAGCCACACACCATCAGTCAGCAGGAAGTCTGGGGAGAGTTTAAGTGTCACTGGTaGCTGGAACCAAATGTAATC | + |
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Preference number: 4 (lower is better) Translates to: QLSQPQPHTISQQEVWGEFKCHW*LEPNVI Trigger: GATTACATTTGGTTCCAGGCACCAGTGACACTTAAA...CTCTCCCCAGACTTCCTGCTGACTGATGGTGTGTGGCTGGGGCTGTGATAATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | TTAGAGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGATCCTCCTGATACCAATCCAAATTTaGGGCAGCAGCAGGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: LEGSTDTALLSTPKQILLIPIQI*GSSRGQ Trigger: CTGTCCCCTGCTGCTGCCCCAAATTTGGATTGGTAT...CAGGAGGATCTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CCA 90 bp | TTGATGACAATTATCACAGCCCCAGCCACACACCATCAGTCAGCAGGAAGTCTGACCTTTAAGTGTCACTaGTGCCTGGAACCAAATGTA | + |
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Preference number: 4 (lower is better) Translates to: LMTIITAPATHHQSAGSLTFKCH*CLEPNV Trigger: TACATTTGGTTCCAGGCACCAGTGACACTTAAAGGT...CAGACTTCCTGCTGACTGATGGTGTGTGGCTGGGGCTGTGATAATTGTCATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 90 bp | TTCCTGGCTCACAGGCCCGGGAAACACCACCGGCACCAGGTCTCTTaGGCAAAAGGGCTCCGCAGGATTGGAAGGTTCCTGGGCTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: FLAHRPGKHHRHQVS*AKGLRRIGRFLGWR Trigger: CCGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCCGGTGGTGTTTCCCGGGCCTGTGAGCCAGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CAA 90 bp | GGGGAGAGAAGGCACATGGCCAGGACAGAGCCTTCCTCCTCCCTCAGTGGGAAGAGTGTCACGGTGAGTTaGTGGCCCCGGCTGGGCACC | + |
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Preference number: 5 (lower is better) Translates to: GERRHMARTEPSSSLSGKSVTVS*WPRLGT Trigger: GGTGCCCAGCCGGGGCCACAAACTCACCGTGACACT...CTTCCCACTGAGGGAGGAGGAAGGCTCTGTCCTGGCCATGTGCCTTCTCTCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 90 bp | CCAGCTCCGCCAAAGCCTGCTGACACTTCCTGTTCCTCGCCTCCGTaGCGAGCCAAGCTTTCTTCCTTGCTGTGTCCTCTGCCTGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: PAPPKPADTSCSSPP*RAKLSSLLCPLPGE Trigger: TTCCCCAGGCAGAGGACACAGCAAGGAAGAAAGCTTGGCTCGCCACGGAGGCGAGGAACAGGAAGTGTCAGCAGGCTTTGGCGGAGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 90 bp | AAGCCATGGCTGGGACGGAAGGTCTGCCACATGACAGTGTCACGGTaGGTTTGTGGCCCCGGCTGGGCACCCGGTAGTTCAGTTTCGGTT | + |
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Preference number: 5 (lower is better) Translates to: KPWLGRKVCHMTVSR*VCGPGWAPGSSVSV Trigger: AACCGAAACTGAACTACCGGGTGCCCAGCCGGGGCCACAAACTCACCGTGACACTGTCATGTGGCAGACCTTCCGTCCCAGCCATGGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS GCA 90 bp | CCTCGCCTCCGTGGCGAGCCAAGCTTTCTTCCTTGCTGTGTCCTCTaGCTGGGGAACTTTCCGGTAGAAGTGCTTCAGCTGTTCATAGGG | + |
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Preference number: 5 (lower is better) Translates to: PRLRGEPSFLPCCVL*LGNFPVEVLQLFIG Trigger: CCCTATGAACAGCTGAAGCACTTCTACCGGAAAGTTCCCCAGGCAGAGGACACAGCAAGGAAGAAAGCTTGGCTCGCCACGGAGGCGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 90 bp | ACACTTGTGGTACGAGTGTCCGGGCAAAGAAGTCTCGTAGGTGACTaGGGACGCTCTCCAGCTCCGCCAAAGCCTGCTGACACTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: TLVVRVSGQRSLVGD*GRSPAPPKPADTSC Trigger: ACAGGAAGTGTCAGCAGGCTTTGGCGGAGCTGGAGAGCGTCCTCAGTCACCTACGAGACTTCTTTGCCCGGACACTCGTACCACAAGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CAA 90 bp | TTGATGACAATTATCACAGCCCCAGCCACACACCATCAGTCAGCAGGAAGTCTGCCGGCACCAGGTCTCTaGGGCAAAAGGGCTCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: LMTIITAPATHHQSAGSLPAPGL*GKRAPQ Trigger: CTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCCGG...CAGACTTCCTGCTGACTGATGGTGTGTGGCTGGGGCTGTGATAATTGTCATCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 90 bp | ACGACGCAAGCAAGCCGCTGTGTTCAGGCCCTGGTCCACACCGAATaGAGCCAGCCTGGACAGGTCAAGTTCATAGAATTCTTTAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: TTQASRCVQALVHTE*SQPGQVKFIEFFRA Trigger: AGCCCTAAAGAATTCTATGAACTTGACCTGTCCAGGCTGGCTCCATTCGGTGTGGACCAGGGCCTGAACACAGCGGCTTGCTTGCGTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 90 bp | GTCTCTTGGGCAAAAGGGCTCCGCAGGATTGGAAGGTTCCTGGGCTaGCGGGATGACAGTCTCAAGATCTACTTCAGGAGCATGAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: VSWAKGLRRIGRFLG*RDDSLKIYFRSMSF Trigger: GAAACTCATGCTCCTGAAGTAGATCTTGAGACTGTCATCCCGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAGAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CAA 90 bp | TTCGGGGGACTTTGCTTGATGACAATTATCACAGCCCCAGCCACACACCATCAGGCCAAGCTTTCTTCCTaGCTGTGTCCTCTGCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: FGGLCLMTIITAPATHHQAKLSS*LCPLPG Trigger: CCCAGGCAGAGGACACAGCAAGGAAGAAAGCTTGGC...CTGATGGTGTGTGGCTGGGGCTGTGATAATTGTCATCAAGCAAAGTCCCCCGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 90 bp | TTCAGGAGCATGAGTTTCTTCCGGCTTCTCATACCAATCCAAATTTaGGGCAGCAGCAGGGGACAGTTCGGACATATCCTCCTCACCGGA | + |
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Preference number: 5 (lower is better) Translates to: FRSMSFFRLLIPIQI*GSSRGQFGHILLTG Trigger: TCCGGTGAGGAGGATATGTCCGAACTGTCCCCTGCTGCTGCCCCAAATTTGGATTGGTATGAGAAGCCGGAAGAAACTCATGCTCCTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 90 bp | TCCTGGGCTGGCGGGATGACAGTCTCAAGATCTACTTCAGGAGCATaGGTTTCTTCCGGCTTCTCATACCAATCCAAATTTGGGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: SWAGGMTVSRSTSGA*VSSGFSYQSKFGAA Trigger: TGCTGCCCCAAATTTGGATTGGTATGAGAAGCCGGAAGAAACTCATGCTCCTGAAGTAGATCTTGAGACTGTCATCCCGCCAGCCCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CAA 90 bp | CCTCCATTATTAGAGGGATCTACTGACACAGCCTTGCTTTCTACTCCCAAACAGCATACCAATCCAAATTaGGGGCAGCAGCAGGGGACA | + |
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Preference number: 5 (lower is better) Translates to: PPLLEGSTDTALLSTPKQHTNPN*GQQQGT Trigger: TGTCCCCTGCTGCTGCCCCAAATTTGGATTGGTATG...CTGTTTGGGAGTAGAAAGCAAGGCTGTGTCAGTAGATCCCTCTAATAATGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CAA 90 bp | ATAACAGTTCTGAAAATCCATAGCATGAAGCAGGGAAGGACCACCTCCATTATTGTAGTTCAGTTTCGGTaGAAACCAATCTTCTCCACA | + |
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Preference number: 5 (lower is better) Translates to: ITVLKIHSMKQGRTTSIIVVQFR*KPIFST Trigger: TGTGGAGAAGATTGGTTTCAACCGAAACTGAACTAC...AATAATGGAGGTGGTCCTTCCCTGCTTCATGCTATGGATTTTCAGAACTGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS-3UTR CAA 90 bp | ATTATCATCCTGATAACAGTTCTGAAAATCCATAGCATGAAGCAGGGAAGGACCTGGTACAGGATATGCTaGAGAAGTTCACAAGTAAAC | + |
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Preference number: 5 (lower is better) Translates to: IIILITVLKIHSMKQGRTWYRIC*RSSQVN Trigger: GTTTACTTGTGAACTTCTCAAGCATATCCTGTACCA...GGTCCTTCCCTGCTTCATGCTATGGATTTTCAGAACTGTTATCAGGATGATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 90 bp | CTTCCTGGCTCACAGGCCCGGGAAACACCACCGGCACCAGGTCTCTaGGGCAAAAGGGCTCCGCAGGATTGGAAGGTTCCTGGGCTGGCG | + |
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Preference number: 6 (lower is better) Translates to: LPGSQARETPPAPGL*GKRAPQDWKVPGLA Trigger: CGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCCGGTGGTGTTTCCCGGGCCTGTGAGCCAGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 72 bp | CTGGGACGGAAGGTCTGCCACATGACAGTGTCACGGTaGGTTTGTGGCCCCGGCTGGGCACCCGGTAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LGRKVCHMTVSR*VCGPGWAPGSS Trigger: TGAACTACCGGGTGCCCAGCCGGGGCCACAAACTCACCGTGACACTGTCATGTGGCAGACCTTCCGTCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 72 bp | AAGAGACGACGCAAGCAAGCCGCTGTGTTCAGGCCCTaGTCCACACCGAATGGAGCCAGCCTGGACAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: KRRRKQAAVFRP*STPNGASLDRS Trigger: TGACCTGTCCAGGCTGGCTCCATTCGGTGTGGACCAGGGCCTGAACACAGCGGCTTGCTTGCGTCGTCTCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 72 bp | GGCACCAGGTCTCTTGGGCAAAAGGGCTCCGCAGGATaGGAAGGTTCCTGGGCTGGCGGGATGACAGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: GTRSLGQKGSAG*EGSWAGGMTVS Trigger: TGAGACTGTCATCCCGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 72 bp | TCACAGGCCCGGGAAACACCACCGGCACCAGGTCTCTaGGGCAAAAGGGCTCCGCAGGATTGGAAGGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SQARETPPAPGL*GKRAPQDWKVP Trigger: AGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCCGGTGGTGTTTCCCGGGCCTGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 72 bp | GTGGCCCCGGCTGGGCACCCGGTAGTTCAGTTTCGGTaGAAACCAATCTTCTCCACAGTCACGGTGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: VAPAGHPVVQFR*KPIFSTVTVAL Trigger: CAGGGCCACCGTGACTGTGGAGAAGATTGGTTTCAACCGAAACTGAACTACCGGGTGCCCAGCCGGGGCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 72 bp | GTACGAGTGTCCGGGCAAAGAAGTCTCGTAGGTGACTaGGGACGCTCTCCAGCTCCGCCAAAGCCTGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: VRVSGQRSLVGD*GRSPAPPKPAD Trigger: GTCAGCAGGCTTTGGCGGAGCTGGAGAGCGTCCTCAGTCACCTACGAGACTTCTTTGCCCGGACACTCGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 72 bp | TGTGGTACGAGTGTCCGGGCAAAGAAGTCTCGTAGGTaGCTGAGGACGCTCTCCAGCTCCGCCAAAGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: CGTSVRAKKSRR*LRTLSSSAKAC Trigger: GCAGGCTTTGGCGGAGCTGGAGAGCGTCCTCAGTCACCTACGAGACTTCTTTGCCCGGACACTCGTACCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 90 bp | AACACCACCGGCACCAGGTCTCTTGGGCAAAAGGGCTCCGCAGGATaGGAAGGTTCCTGGGCTGGCGGGATGACAGTCTCAAGATCTACT | + |
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Preference number: 6 (lower is better) Translates to: NTTGTRSLGQKGSAG*EGSWAGGMTVSRST Trigger: AGTAGATCTTGAGACTGTCATCCCGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAGAGACCTGGTGCCGGTGGTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 90 bp | GGTGAGTTTGTGGCCCCGGCTGGGCACCCGGTAGTTCAGTTTCGGTaGAAACCAATCTTCTCCACAGTCACGGTGGCCCTGAACCATGAC | + |
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Preference number: 6 (lower is better) Translates to: GEFVAPAGHPVVQFR*KPIFSTVTVALNHD Trigger: GTCATGGTTCAGGGCCACCGTGACTGTGGAGAAGATTGGTTTCAACCGAAACTGAACTACCGGGTGCCCAGCCGGGGCCACAAACTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 72 bp | GCAAGCCGCTGTGTTCAGGCCCTGGTCCACACCGAATaGAGCCAGCCTGGACAGGTCAAGTTCATAGAATTC | + |
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Preference number: 6 (lower is better) Translates to: ASRCVQALVHTE*SQPGQVKFIEF Trigger: GAATTCTATGAACTTGACCTGTCCAGGCTGGCTCCATTCGGTGTGGACCAGGGCCTGAACACAGCGGCTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 72 bp | CTTGGGCAAAAGGGCTCCGCAGGATTGGAAGGTTCCTaGGCTGGCGGGATGACAGTCTCAAGATCTACTTCA | + |
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Preference number: 6 (lower is better) Translates to: LGQKGSAGLEGS*AGGMTVSRSTS Trigger: TGAAGTAGATCTTGAGACTGTCATCCCGCCAGCCCAGGAACCTTCCAATCCTGCGGAGCCCTTTTGCCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 72 bp | GCTCCGCAGGATTGGAAGGTTCCTGGGCTGGCGGGATaGCAGTCTCAAGATCTACTTCAGGAGCATGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: APQDWKVPGLAG*QSQDLLQEHEF Trigger: AAACTCATGCTCCTGAAGTAGATCTTGAGACTGTCATCCCGCCAGCCCAGGAACCTTCCAATCCTGCGGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 72 bp | CTGGTGCCTGGAACCAAATGTAATCCTCTGAAGCCATaGCTGGGACGGAAGGTCTGCCACATGACAGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LVPGTKCNPLKP*LGRKVCHMTVS Trigger: TGACACTGTCATGTGGCAGACCTTCCGTCCCAGCCATGGCTTCAGAGGATTACATTTGGTTCCAGGCACCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CAA 90 bp | CTTCAGGAGCATGAGTTTCTTCCGGCTTCTCATACCAATCCAAATTaGGGGCAGCAGCAGGGGACAGTTCGGACATATCCTCCTCACCGG | + |
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Preference number: 6 (lower is better) Translates to: LQEHEFLPASHTNPN*GQQQGTVRTYPPHR Trigger: CCGGTGAGGAGGATATGTCCGAACTGTCCCCTGCTGCTGCCCCAAATTTGGATTGGTATGAGAAGCCGGAAGAAACTCATGCTCCTGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS CCA 72 bp | ATGAGTTTCTTCCGGCTTCTCATACCAATCCAAATTTaGGGCAGCAGCAGGGGACAGTTCGGACATATCCTC | + |
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Preference number: 6 (lower is better) Translates to: MSFFRLLIPIQI*GSSRGQFGHIL Trigger: GAGGATATGTCCGAACTGTCCCCTGCTGCTGCCCCAAATTTGGATTGGTATGAGAAGCCGGAAGAAACTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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| CDS TCA 72 bp | GGCGGGATGACAGTCTCAAGATCTACTTCAGGAGCATaGGTTTCTTCCGGCTTCTCATACCAATCCAAATTT | + |
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Preference number: 6 (lower is better) Translates to: GGMTVSRSTSGA*VSSGFSYQSKF Trigger: AAATTTGGATTGGTATGAGAAGCCGGAAGAAACTCATGCTCCTGAAGTAGATCTTGAGACTGTCATCCCGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171172.3 |
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