RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MACROD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068205

Ensembl transcript IDs: ENSMUST00000043836.8, ENSMUST00000078027.12, ENSMUST00000110061.2, ENSMUST00000110062.8, ENSMUST00000110063.8, ENSMUST00000110064.8, ENSMUST00000110067.8, ENSMUST00000156619.2

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTAGATCCCCAAGAGGCAGTGGGAGACCTAGGATTATTCTGGGATaGATAGTTGGGAGGATGCCCAGCCTCCTCTGGTCCTCATTGTTT +
Preference number: 1 (lower is better)
Translates to: FRSPRGSGRPRIILG*IVGRMPSLLWSSLF
Trigger: AAACAATGAGGACCAGAGGAGGCTGGGCATCCTCCCAACTATCCATCCCAGAATAATCCTAGGTCTCCCACTGCCTCTTGGGGATCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 90 bp CAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGATaGCCAAACACAACGGCTGCCATTGGTAATGAGAAAGGTGGCCTG +
Preference number: 1 (lower is better)
Translates to: QRILSPRFLTYPHTR*PNTTAAIGNEKGGL
Trigger: CAGGCCACCTTTCTCATTACCAATGGCAGCCGTTGTGTTTGGTCATCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 90 bp ATCCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTaGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCAC +
Preference number: 1 (lower is better)
Translates to: IPLLPFMTCACLKCV*KWPSSIHVQKASVH
Trigger: GTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 90 bp TGTGACCCTATAATGGAGGCTGAGTTATACTTCCCCATGGAGTTATaGGGAAATGCCTTTCCAGCATGGTTCTTTTGTCAGGCACTTCAC +
Preference number: 1 (lower is better)
Translates to: CDPIMEAELYFPMEL*GNAFPAWFFCQALH
Trigger: GTGAAGTGCCTGACAAAAGAACCATGCTGGAAAGGCATTTCCCCATAACTCCATGGGGAAGTATAACTCAGCCTCCATTATAGGGTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 90 bp GGCATCCTGGGTGTGAAGAGTGGAGAATCTAGAGGCTGCCAAGTCTaGCCTTCTTCGTTAATGCCTGATTTGAATATTTTGAACTCCTTA +
Preference number: 1 (lower is better)
Translates to: GILGVKSGESRGCQV*PSSLMPDLNILNSL
Trigger: TAAGGAGTTCAAAATATTCAAATCAGGCATTAACGAAGAAGGTCAGACTTGGCAGCCTCTAGATTCTCCACTCTTCACACCCAGGATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 90 bp GACCTGAAAACTTCCTTCCTGCTGACTAGCTTTCATAATGCTAGGTaGTATACAGACTGGTGGGTGAGAAATTCATCAACAGTATTACCC +
Preference number: 1 (lower is better)
Translates to: DLKTSFLLTSFHNAR*YTDWWVRNSSTVLP
Trigger: GGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATTATGAAAGCTAGTCAGCAGGAAGGAAGTTTTCAGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR TCA 90 bp CTTCTTAAGTCATGTATAGTTCTGGATAAGTTTTGGATGAGTGGATaGGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGACCAGGAA +
Preference number: 1 (lower is better)
Translates to: LLKSCIVLDKFWMSG*AAKSPLDLALADQE
Trigger: TTCCTGGTCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAACTTATCCAGAACTATACATGACTTAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 90 bp GTTCGAAGGCAACAGTCATTTAAGTGTCATAGTGTGTGGCACAGATaGAAAGAGACAAACAGATTCAGAAGCTGTCCAGCATTTCAAGAC +
Preference number: 1 (lower is better)
Translates to: VRRQQSFKCHSVWHR*KETNRFRSCPAFQD
Trigger: GTCTTGAAATGCTGGACAGCTTCTGAATCTGTTTGTCTCTTTTCATCTGTGCCACACACTATGACACTTAAATGACTGTTGCCTTCGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 90 bp TGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATaGCTTCAGTCTGGCCCAGAGCTAACATTTTTATATTTCATTATT +
Preference number: 1 (lower is better)
Translates to: CAVTGPVNNTSPYLR*LQSGPELTFLYFII
Trigger: AATAATGAAATATAAAAATGTTAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 90 bp CCTCTGTGGGCTAGCACATCTTGGGTCACCATGGATATTCTTTTATaGAGAGTAGAGACTTCAAGTGGAACTTTGAAAACTACAATTGTT +
Preference number: 1 (lower is better)
Translates to: PLWASTSWVTMDILL*RVETSSGTLKTTIV
Trigger: AACAATTGTAGTTTTCAAAGTTCCACTTGAAGTCTCTACTCTTCATAAAAGAATATCCATGGTGACCCAAGATGTGCTAGCCCACAGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 90 bp ACAGTGGCCATTCATTCTTCTGATGAATGGTTATTTATAGCTTGTTaGCACTATAAGCAAACATGTTTGCATAATTCGCTGGGGAAGACT +
Preference number: 1 (lower is better)
Translates to: TVAIHSSDEWLFIAC*HYKQTCLHNSLGKT
Trigger: AGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCAACAAGCTATAAATAACCATTCATCAGAAGAATGAATGGCCACTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR TCA 90 bp GAAGACACAGCATACTTTGGTTACAGGACATACAGAAATCAATCTTaGATTGACCTGAAAACTTCCTTCCTGCTGACTAGCTTTCATAAT +
Preference number: 1 (lower is better)
Translates to: EDTAYFGYRTYRNQS*IDLKTSFLLTSFHN
Trigger: ATTATGAAAGCTAGTCAGCAGGAAGGAAGTTTTCAGGTCAATTCAAGATTGATTTCTGTATGTCCTGTAACCAAAGTATGCTGTGTCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCGGGGCCTCCCACAGATaGAGGGAGCTTGCTTGCTTT +
Preference number: 2 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAGASHR*RELACF
Trigger: AAAGCAAGCAAGCTCCCTCCATCTGTGGGAGGCCCC...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp CCAGTGAACAACACATCTCCTTATCTGAGATGCCTTCAGTCTGGCCCAGAGCTAGGGGCCTCCCACAGATaGAGGGAGCTTGCTTGCTTT +
Preference number: 2 (lower is better)
Translates to: PVNNTSPYLRCLQSGPELGASHR*RELACF
Trigger: AAAGCAAGCAAGCTCCCTCCATCTGTGGGAGGCCCC...TAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCTCTGGGATGGATAGTTaGGAGGATGCCCAGCCTCCT +
Preference number: 2 (lower is better)
Translates to: PPIALHDMCLSEVCLEMASGMDS*EDAQPP
Trigger: AGGAGGCTGGGCATCCTCCCAACTATCCATCCCAGA...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp CTCAAGGTACTACTGCCAAAGACTGTGCCCTCTGCCATGCTGGACTATAACATCAGCTGCCACCATTCATaGAGGCAAAGTACTGCGCTG +
Preference number: 2 (lower is better)
Translates to: LKVLLPKTVPSAMLDYNISCHHS*RQSTAL
Trigger: CAGCGCAGTACTTTGCCTTCATGAATGGTGGCAGCT...GATGTTATAGTCCAGCATGGCAGAGGGCACAGTCTTTGGCAGTAGTACCTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCTGTGGATTATACCAGTaGTGGGCATGGCAGCTCTTG +
Preference number: 2 (lower is better)
Translates to: PPIALHDMCLSEVCLEMACGLYQ*WAWQLL
Trigger: CAAGAGCTGCCATGCCCATCACTGGTATAATCCACA...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCAATCAGCCCCAAAAATaGACACACAGGGCATCCTGG +
Preference number: 2 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCNQPQK*THRASW
Trigger: CCAGGATGCCCTGTGTGTTCATTTTTGGGGCTGATT...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CAA 90 bp CATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATaGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCC +
Preference number: 2 (lower is better)
Translates to: HSCAESISPLPTCTA*YSLCSDRASEQHIS
Trigger: GGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TGTCTCCCACCCTTCTTGTCTGTTTGCCTTCAGGAAGTTCACTCTCTCGCCCACGGCCTCTTTTCCTATTaGCCAAGCTGTAAGACTTTC +
Preference number: 2 (lower is better)
Translates to: CLPPFLSVCLQEVHSLAHGLFSY*PSCKTF
Trigger: GAAAGTCTTACAGCTTGGGCAATAGGAAAAGAGGCC...GTGGGCGAGAGAGTGAACTTCCTGAAGGCAAACAGACAAGAAGGGTGGGAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATTCCCCATGGAGTTATaGGGAAATGCCTTTCCAGCA +
Preference number: 2 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTFPMEL*GNAFPA
Trigger: TGCTGGAAAGGCATTTCCCCATAACTCCATGGGGAA...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCGGGCATGGCAGCTCTTaGAATTTAGCCTGCCAGTTT +
Preference number: 2 (lower is better)
Translates to: LYANVTNNRASFLPSPYCGHGSS*NLACQF
Trigger: AAACTGGCAGGCTAAATTTCAAGAGCTGCCATGCCC...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCAATCAGCCCCAAAAATaGACACACAGGGCATCCTGG +
Preference number: 2 (lower is better)
Translates to: LYANVTNNRASFLPSPYCNQPQK*THRASW
Trigger: CCAGGATGCCCTGTGTGTTCATTTTTGGGGCTGATT...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCCCCAGGGCCAGGCCTTaGCATGCTGAGGGCTGTCAT +
Preference number: 2 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTPRARP*HAEGCH
Trigger: ATGACAGCCCTCAGCATGGCAAGGCCTGGCCCTGGG...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
3UTR-3UTR GCA 90 bp CCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCAACTTCCCACATGTACTaGATTGTACAGCCTGTGCAG +
Preference number: 2 (lower is better)
Translates to: PLLPFMTCACLKCVWKWPTSHMY*IVQPVQ
Trigger: CTGCACAGGCTGTACAATGCAGTACATGTGGGAAGT...TGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TCCCAAAAGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGGGCAAAGTACTGCGCTaGATGTTTAAGACTGATGGC +
Preference number: 2 (lower is better)
Translates to: SQKQQIAAISRLLPRTRWGKVLR*MFKTDG
Trigger: GCCATCAGTCTTAAACATCCAGCGCAGTACTTTGCC...CCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCTTTTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGAAGTGTGAACCTCTGTaGGCTAGCACATCTTGGGTC +
Preference number: 2 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMKCEPL*ASTSWV
Trigger: GACCCAAGATGTGCTAGCCCACAGAGGTTCACACTT...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACAAGTAGGGTGTTAAGATaGTATGCAAAAGACACGACC +
Preference number: 2 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTSRVLR*YAKDTT
Trigger: GGTCGTGTCTTTTGCATATCATCTTAACACCCTACT...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCAAACCAAGGAAGCAGTaGTTGAAATCAGCCCCAAAA +
Preference number: 2 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCKPRKQ*LKSAPK
Trigger: TTTTGGGGCTGATTTCAAGCACTGCTTCCTTGGTTT...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TGCCCAGCCTCCTCTGGTCCTCATTGTTTGAGCTACCACTGTTCCACTGGCTTCAAGACAGAAATGATATaGACTGAGTGCCTGAAAGAT +
Preference number: 2 (lower is better)
Translates to: CPASSGPHCLSYHCSTGFKTEMI*TECLKD
Trigger: ATCTTTCAGGCACTCAGTCCATATCATTTCTGTCTT...GAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCAGTTATACTTCCCCATaGAGTTATGGGGAAATGCCT +
Preference number: 2 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCSYTSP*SYGEMP
Trigger: AGGCATTTCCCCATAACTCCATGGGGAAGTATAACT...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp TACAGTTTCCAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGATATGGACTGAGTGCCTaGAAGATGCTAAGCATGGGG +
Preference number: 2 (lower is better)
Translates to: YSFQRILSPRFLTYPHTRYGLSA*KMLSMG
Trigger: CCCCATGCTTAGCATCTTTCAGGCACTCAGTCCATA...TCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTGGAAACTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp TACAGTTTCCAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGAACCATGGCCCTAGGGTaGGACATGGATAAAAGACAG +
Preference number: 2 (lower is better)
Translates to: YSFQRILSPRFLTYPHTRTMALG*DMDKRQ
Trigger: CTGTCTTTTATCCATGTCTCACCCTAGGGCCATGGT...TCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTGGAAACTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TCCCAAAAGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGCCAAAAGCAACAGATTaGTGCCATTTCTCGTTTGCT +
Preference number: 2 (lower is better)
Translates to: SQKQQIAAISRLLPRTRWPKATD*CHFSFA
Trigger: AGCAAACGAGAAATGGCAGCAATCTGTTGCTTTTGG...CCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCTTTTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR GCA 90 bp ATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCCCTTCATGACATGTGCCTGATGATATGGACTGAGTaGCTGAAAGATGCTAAGCAT +
Preference number: 2 (lower is better)
Translates to: ITGLVSSHPPIALHDMCLMIWTE*LKDAKH
Trigger: ATGCTTAGCATCTTTCAGGCACTCAGTCCATATCAT...CAGGCACATGTCATGAAGGGCAATAGGGGGATGGGAGGAAACTAGCCCTGTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGGGAGTTATGGGGAAATaGCTTTCCAGCATGGTTCTT +
Preference number: 2 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVGVMGK*LSSMVL
Trigger: AAGAACCATGCTGGAAAGGCATTTCCCCATAACTCC...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp AGGTCAGTGTTAGTTAGACACGCAACAAAACTGCATGTGTCTCCCACCCTTCTTGGCAAAGTACTGCGCTaGATGTTTAAGACTGATGGC +
Preference number: 2 (lower is better)
Translates to: RSVLVRHATKLHVSPTLLGKVLR*MFKTDG
Trigger: GCCATCAGTCTTAAACATCCAGCGCAGTACTTTGCC...AAGAAGGGTGGGAGACACATGCAGTTTTGTTGCGTGTCTAACTAACACTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp TCCCTAATGATGGTTCTGTCAGGGATTTGGTCATGGTTCAAACTAGACAAAAACAGCTGCCACCATTCATaGAGGCAAAGTACTGCGCTG +
Preference number: 2 (lower is better)
Translates to: SLMMVLSGIWSWFKLDKNSCHHS*RQSTAL
Trigger: CAGCGCAGTACTTTGCCTTCATGAATGGTGGCAGCT...GTTTTTGTCTAGTTTGAACCATGACCAAATCCCTGACAGAACCATCATTAGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp CTCAAGGTACTACTGCCAAAGACTGTGCCCTCTGCCATGCTGGACTATAACATCATACAGACTGGTGGGTaGGAAATTCATCAACAGTAT +
Preference number: 2 (lower is better)
Translates to: LKVLLPKTVPSAMLDYNIIQTGG*EIHQQY
Trigger: ATACTGTTGATGAATTTCTCACCCACCAGTCTGTAT...GATGTTATAGTCCAGCATGGCAGAGGGCACAGTCTTTGGCAGTAGTACCTTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCAGGCCTTGCCATGCTaGGGGCTGTCATTTAGCTTC +
Preference number: 2 (lower is better)
Translates to: STGKGQTSKLDEILIKWYQALPC*GLSFSF
Trigger: GAAGCTAAATGACAGCCCTCAGCATGGCAAGGCCTG...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
3UTR-3UTR TCA 90 bp CCAGTGAACAACACATCTCCTTATCTGAGATGCCTTCAGTCTGGCCCAGAGCTAGGTGCTTGTAAAATATaGAGATGGCAGGAAACATTG +
Preference number: 2 (lower is better)
Translates to: PVNNTSPYLRCLQSGPELGACKI*RWQETL
Trigger: CAATGTTTCCTGCCATCTTCATATTTTACAAGCACC...TAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TACAGTTTCCAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGAAGGATTATTCTGGGATaGATAGTTGGGAGGATGCCC +
Preference number: 2 (lower is better)
Translates to: YSFQRILSPRFLTYPHTRRIILG*IVGRMP
Trigger: GGGCATCCTCCCAACTATCCATCCCAGAATAATCCT...TCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTGGAAACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TACAGTTTCCAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGATTCCCCATGGAGTTATaGGGAAATGCCTTTCCAGCA +
Preference number: 2 (lower is better)
Translates to: YSFQRILSPRFLTYPHTRFPMEL*GNAFPA
Trigger: TGCTGGAAAGGCATTTCCCCATAACTCCATGGGGAA...TCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTGGAAACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGCTTCCAAGTGTTATCTaGGGTTTGTACCCATTTTCT +
Preference number: 2 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVLPSVI*GLYPFS
Trigger: AGAAAATGGGTACAAACCTCAGATAACACTTGGAAG...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TCCCTAATGATGGTTCTGTCAGGGATTTGGTCATGGTTCAAACTAGACAAAAACCTGCCATTTCTCGTTTaGTCCCCAGAACTAGGTGGT +
Preference number: 2 (lower is better)
Translates to: SLMMVLSGIWSWFKLDKNLPFLV*SPELGG
Trigger: ACCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAG...GTTTTTGTCTAGTTTGAACCATGACCAAATCCCTGACAGAACCATCATTAGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR GCA 90 bp CCAGTGAACAACACATCTCCTTATCTGAGATGCCTTCAGTCTGGCCCAGAGCTATTAAAAGGTAACATATaGAGAGGTGTGGTTTGCTAC +
Preference number: 2 (lower is better)
Translates to: PVNNTSPYLRCLQSGPELLKGNI*RGVVCY
Trigger: GTAGCAAACCACACCTCTGCATATGTTACCTTTTAA...TAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp AGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGTAAGATCTGTTACCCTCAATCTTaGTCAAAGAAGCTTCTCTGT +
Preference number: 2 (lower is better)
Translates to: SNRLLPFLVCSPELGGKICYPQS*SKKLLC
Trigger: ACAGAGAAGCTTCTTTGACCAAGATTGAGGGTAACA...GATCTTACCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp CAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGGAGTATGGACTGAGTGCCTaGAAGATGCTAAGCATGGGG +
Preference number: 2 (lower is better)
Translates to: QETLKLSIWVVSLDYLEEYGLSA*KMLSMG
Trigger: CCCCATGCTTAGCATCTTTCAGGCACTCAGTCCATA...CTCCTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCGGGCATGGCAGCTCTTaGAATTTAGCCTGCCAGTTT +
Preference number: 2 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTGHGSS*NLACQF
Trigger: AAACTGGCAGGCTAAATTTCAAGAGCTGCCATGCCC...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGCTGGTCCTCATTGTTTaGGCTACCACTGTTCCACTG +
Preference number: 2 (lower is better)
Translates to: WQETLKLSIWVVSLDYLELVLIV*ATTVPL
Trigger: CAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAG...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTTATCCCCACACAAGATaGCCAAACACAACGGCTGCC +
Preference number: 2 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSYPHTR*PNTTAA
Trigger: GGCAGCCGTTGTGTTTGGTCATCTTGTGTGGGGATA...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGATGGAGGGAGCTTGCTTaGTTTTTCATTTTTCTTGTC +
Preference number: 2 (lower is better)
Translates to: VLDEWMSCQITLGFGISRWRELA*FFIFLV
Trigger: GACAAGAAAAATGAAAAAGCAAGCAAGCTCCCTCCA...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCTGCAGAGGTGTGGTTTaGTACTTACTTTATTATACC +
Preference number: 2 (lower is better)
Translates to: LYANVTNNRASFLPSPYCCRGVV*YLLYYT
Trigger: GGTATAATAAAGTAAGTAGCAAACCACACCTCTGCA...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGTGCAGAGGTGTGGTTTaGTACTTACTTTATTATACC +
Preference number: 2 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVCRGVV*YLLYYT
Trigger: GGTATAATAAAGTAAGTAGCAAACCACACCTCTGCA...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGCATCTTGGGTCACCATaGATATTCTTTTATGAAGAG +
Preference number: 2 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVHLGSP*IFFYEE
Trigger: CTCTTCATAAAAGAATATCCATGGTGACCCAAGATG...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTATTGAAGCTATCTATCTaGGTGGTATCCTTAGATTAT +
Preference number: 2 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLLKLSI*VVSLDY
Trigger: ATAATCTAAGGATACCACCCAGATAGATAGCTTCAA...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp AATAGATTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAGGGCATCCTGGGTGTaGAGAGTGGAGAATCTAGAG +
Preference number: 2 (lower is better)
Translates to: NRLESQMKQDTPFDLNDSRASWV*RVENLE
Trigger: CTCTAGATTCTCCACTCTTCACACCCAGGATGCCCT...ACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TGCCACTATAAGCAAACATGTTTGCATAATTCGCTGGGGAAGACTAAAGCAAAGAAAGCAACAGATTGCTaGCATTTCTCGTTTGCTCCC +
Preference number: 2 (lower is better)
Translates to: CHYKQTCLHNSLGKTKAKKATDC*HFSFAP
Trigger: GGGAGCAAACGAGAAATGGCAGCAATCTGTTGCTTT...CTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR GCA 90 bp CTGAAAACTTCCTTCCTGCTGACTAGCTTTCATAATGCTAGGTGCTATACAGACGGAAATGGTAAAGACTaGCTCCCAAAAGCAACAGAT +
Preference number: 2 (lower is better)
Translates to: LKTSFLLTSFHNARCYTDGNGKD*LPKATD
Trigger: ATCTGTTGCTTTTGGGAGGCAGTCTTTACCATTTCC...GTCTGTATAGCACCTAGCATTATGAAAGCTAGTCAGCAGGAAGGAAGTTTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp AATGCTAGGTGCTATACAGACTGGTGGGTGAGAAATTCATCAACAGTATTACCCAGGTGCTATACAGACTaGTGGGTGAGAAATTCATCA +
Preference number: 2 (lower is better)
Translates to: NARCYTDWWVRNSSTVLPRCYTD*WVRNSS
Trigger: TGATGAATTTCTCACCCACCAGTCTGTATAGCACCT...GGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp AAAAAGAGAGAAAGCCCATTTTCTAAGACTGAGCATACTTCACAGTGGCCATTCATGGAATGTCCCCCATaGGCATATGAGATTGAACAC +
Preference number: 2 (lower is better)
Translates to: KKRESPFSKTEHTSQWPFMECPP*AYEIEH
Trigger: GTGTTCAATCTCATATGCCCATGGGGGACATTCCAT...GAATGGCCACTGTGAAGTATGCTCAGTCTTAGAAAATGGGCTTTCTCTCTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGAATGAGCAAAAGCCATaGGGAAACTTTATGAAATTC +
Preference number: 2 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVNEQKP*GNFMKF
Trigger: GAATTTCATAAAGTTTCCCCATGGCTTTTGCTCATT...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp AGCTTCTCTGTGCAAAAGACAGGAGTGATACATAAGCTTGTAACTGGCCAAAGTTGGAGAGGAATATTGTaGAAAGCTATCTCTAGACGT +
Preference number: 2 (lower is better)
Translates to: SFSVQKTGVIHKLVTGQSWRGIL*KAISRR
Trigger: ACGTCTAGAGATAGCTTTTCACAATATTCCTCTCCA...ACTTTGGCCAGTTACAAGCTTATGTATCACTCCTGTCTTTTGCACAGAGAAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp CTGAAAACTTCCTTCCTGCTGACTAGCTTTCATAATGCTAGGTGCTATACAGACGAAACTCTCAGTGCTTaGTATGGAATACTTGTCTCT +
Preference number: 2 (lower is better)
Translates to: LKTSFLLTSFHNARCYTDETLSA*YGILVS
Trigger: AGAGACAAGTATTCCATATCAAGCACTGAGAGTTTC...GTCTGTATAGCACCTAGCATTATGAAAGCTAGTCAGCAGGAAGGAAGTTTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp GATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGATATCCTCTCACCATGGCCCTAGGGTaGGACATGGATAAAAGACAG +
Preference number: 2 (lower is better)
Translates to: DEILIKWYHPTVNFRYPLTMALG*DMDKRQ
Trigger: CTGTCTTTTATCCATGTCTCACCCTAGGGCCATGGT...GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp GATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGATATCCTCTCTGTGGATTATACCAGTaGTGGGCATGGCAGCTCTTG +
Preference number: 2 (lower is better)
Translates to: DEILIKWYHPTVNFRYPLCGLYQ*WAWQLL
Trigger: CAAGAGCTGCCATGCCCATCACTGGTATAATCCACA...GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTGCCCTTCATGACATGTaGCTGTCTGAAGTGTGTTTG +
Preference number: 2 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSALHDM*LSEVCL
Trigger: CAAACACACTTCAGACAGGCACATGTCATGAAGGGC...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp CTTAAACGGGACATCAATATCAACATCCCCAACTCAAGGCTCGGGAAATACCACTTAGGGAAAGTGAGATaGGGAGTTGAGAATAAATAT +
Preference number: 2 (lower is better)
Translates to: LKRDININIPNSRLGKYHLGKVR*GVENKY
Trigger: ATATTTATTCTCAACTCCCCATCTCACTTTCCCTAA...GTGGTATTTCCCGAGCCTTGAGTTGGGGATGTTGATATTGATGTCCCGTTTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGAGTTCTTTCTTATTCATaGAACAAACTGTCCTATGAC +
Preference number: 2 (lower is better)
Translates to: VLDEWMSCQITLGFGISRVLSYS*NKLSYD
Trigger: GTCATAGGACAGTTTGTTCCATGAATAAGAAAGAAC...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp GATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGATATCCTCTCAAGTGTGAACCTCTGTaGGCTAGCACATCTTGGGTC +
Preference number: 2 (lower is better)
Translates to: DEILIKWYHPTVNFRYPLKCEPL*ASTSWV
Trigger: GACCCAAGATGTGCTAGCCCACAGAGGTTCACACTT...GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATAGGATTATTCTGGGATaGATAGTTGGGAGGATGCCC +
Preference number: 2 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHRIILG*IVGRMP
Trigger: GGGCATCCTCCCAACTATCCATCCCAGAATAATCCT...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACGAGATACTTATAAAGTaGTATCATCCCACTGTTAAC +
Preference number: 2 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYEILIK*YHPTVN
Trigger: GTTAACAGTGGGATGATACCACTTTATAAGTATCTC...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp TGCCACTATAAGCAAACATGTTTGCATAATTCGCTGGGGAAGACTAAAGCAAAGTGGAGAGGAATATTGTaGAAAGCTATCTCTAGACGT +
Preference number: 2 (lower is better)
Translates to: CHYKQTCLHNSLGKTKAKWRGIL*KAISRR
Trigger: ACGTCTAGAGATAGCTTTTCACAATATTCCTCTCCA...CTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATAGTAGGGTGTTAAGATaGTATGCAAAAGACACGACC +
Preference number: 2 (lower is better)
Translates to: STGKGQTSKLDEILIKWYSRVLR*YAKDTT
Trigger: GGTCGTGTCTTTTGCATATCATCTTAACACCCTACT...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCAAACCAAGGAAGCAGTaGTTGAAATCAGCCCCAAAA +
Preference number: 2 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTKPRKQ*LKSAPK
Trigger: TTTTGGGGCTGATTTCAAGCACTGCTTCCTTGGTTT...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTGGAGTTATGGGGAAATaGCTTTCCAGCATGGTTCTT +
Preference number: 2 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSGVMGK*LSSMVL
Trigger: AAGAACCATGCTGGAAAGGCATTTCCCCATAACTCC...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp AAAGCCACACCTTTACATAGGTATGTACTCATCCTTTTGTCTGTATTAGTAAGAGGCAAAGTACTGCGCTaGATGTTTAAGACTGATGGC +
Preference number: 2 (lower is better)
Translates to: KATPLHRYVLILLSVLVRGKVLR*MFKTDG
Trigger: GCCATCAGTCTTAAACATCCAGCGCAGTACTTTGCC...TCTTACTAATACAGACAAAAGGATGAGTACATACCTATGTAAAGGTGTGGCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp TGCCACTATAAGCAAACATGTTTGCATAATTCGCTGGGGAAGACTAAAGCAAAGTGTTACCCTCAATCTTaGTCAAAGAAGCTTCTCTGT +
Preference number: 2 (lower is better)
Translates to: CHYKQTCLHNSLGKTKAKCYPQS*SKKLLC
Trigger: ACAGAGAAGCTTCTTTGACCAAGATTGAGGGTAACA...CTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp AATGCTAGGTGCTATACAGACTGGTGGGTGAGAAATTCATCAACAGTATTACCCAGACACAGCATACTTTaGTTACAGGACATACAGAAA +
Preference number: 2 (lower is better)
Translates to: NARCYTDWWVRNSSTVLPRHSIL*LQDIQK
Trigger: TTTCTGTATGTCCTGTAACCAAAGTATGCTGTGTCT...GGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CAA 90 bp GATGAATGGTTATTTATAGCTTGTTGCCACTATAAGCAAACATGTTaGCATAATTCGCTGGGGAAGACTAAAGCAAAGCCACACCTTTAC +
Preference number: 2 (lower is better)
Translates to: DEWLFIACCHYKQTC*HNSLGKTKAKPHLY
Trigger: GTAAAGGTGTGGCTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCAACAAGCTATAAATAACCATTCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CAA 90 bp TTTCTCAAAGCACAGCTGACATGCACCACATACAGAGAAATGTCTTaGCAAACCAAGTGCATCAAGCAGAACTGTATTAATTCACAAAGA +
Preference number: 2 (lower is better)
Translates to: FLKAQLTCTTYREMS*QTKCIKQNCINSQR
Trigger: TCTTTGTGAATTAATACAGTTCTGCTTGATGCACTTGGTTTGCAAAGACATTTCTCTGTATGTGGTGCATGTCAGCTGTGCTTTGAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp TCCCTAATGATGGTTCTGTCAGGGATTTGGTCATGGTTCAAACTAGACAAAAACAAAAAGACCAAAGAATaGAAAGCCAGGACTCAGAAT +
Preference number: 2 (lower is better)
Translates to: SLMMVLSGIWSWFKLDKNKKTKE*KARTQN
Trigger: ATTCTGAGTCCTGGCTTTTCATTCTTTGGTCTTTTT...GTTTTTGTCTAGTTTGAACCATGACCAAATCCCTGACAGAACCATCATTAGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR GCA 90 bp TGCCACTATAAGCAAACATGTTTGCATAATTCGCTGGGGAAGACTAAAGCAAAGATAAGCAAACATGTTTaGATAATTCGCTGGGGAAGA +
Preference number: 2 (lower is better)
Translates to: CHYKQTCLHNSLGKTKAKISKHV*IIRWGR
Trigger: TCTTCCCCAGCGAATTATGCAAACATGTTTGCTTAT...CTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR GCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGTGGAGGGAGCTTGCTTaGTTTTTCATTTTTCTTGTC +
Preference number: 2 (lower is better)
Translates to: WQETLKLSIWVVSLDYLEWRELA*FFIFLV
Trigger: GACAAGAAAAATGAAAAAGCAAGCAAGCTCCCTCCA...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp AAAGCCACACCTTTACATAGGTATGTACTCATCCTTTTGTCTGTATTAGTAAGACACCTGATCCCAAATTaGTGCCTCTGTTTTGAGAAG +
Preference number: 2 (lower is better)
Translates to: KATPLHRYVLILLSVLVRHLIPN*CLCFEK
Trigger: CTTCTCAAAACAGAGGCACCAATTTGGGATCAGGTG...TCTTACTAATACAGACAAAAGGATGAGTACATACCTATGTAAAGGTGTGGCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR TCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTGGCACTTCACAAAAGTaGTGGGTGCTTGTAAAATAT +
Preference number: 2 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSGTSQK*WVLVKY
Trigger: ATATTTTACAAGCACCCATCACTTTTGTGAAGTGCC...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp AAAGCCACACCTTTACATAGGTATGTACTCATCCTTTTGTCTGTATTAGTAAGACTGATCCCAAATTGGTaGCTCTGTTTTGAGAAGTTG +
Preference number: 2 (lower is better)
Translates to: KATPLHRYVLILLSVLVRLIPNW*LCFEKL
Trigger: CAACTTCTCAAAACAGAGGCACCAATTTGGGATCAG...TCTTACTAATACAGACAAAAGGATGAGTACATACCTATGTAAAGGTGTGGCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR GCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTATGATATGGACTGAGTaGCTGAAAGATGCTAAGCAT +
Preference number: 2 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSMIWTE*LKDAKH
Trigger: ATGCTTAGCATCTTTCAGGCACTCAGTCCATATCAT...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATGGTGTTAAGATGATATaGAAAAGACACGACCATGTC +
Preference number: 2 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHGVKMI*KRHDHV
Trigger: GACATGGTCGTGTCTTTTGCATATCATCTTAACACC...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR GCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGTTAAAAGGTAACATATaGAGAGGTGTGGTTTGCTAC +
Preference number: 2 (lower is better)
Translates to: WQETLKLSIWVVSLDYLELKGNI*RGVVCY
Trigger: GTAGCAAACCACACCTCTGCATATGTTACCTTTTAA...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TCCCTAATGATGGTTCTGTCAGGGATTTGGTCATGGTTCAAACTAGACAAAAACTTAGGGAAAGTGAGATaGGGAGTTGAGAATAAATAT +
Preference number: 2 (lower is better)
Translates to: SLMMVLSGIWSWFKLDKNLGKVR*GVENKY
Trigger: ATATTTATTCTCAACTCCCCATCTCACTTTCCCTAA...GTTTTTGTCTAGTTTGAACCATGACCAAATCCCTGACAGAACCATCATTAGGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATAAGACAGAAATGATATaGACTGAGTGCCTGAAAGAT +
Preference number: 2 (lower is better)
Translates to: STGKGQTSKLDEILIKWYKTEMI*TECLKD
Trigger: ATCTTTCAGGCACTCAGTCCATATCATTTCTGTCTT...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGGAGATACTTATAAAGTaGTATCATCCCACTGTTAAC +
Preference number: 2 (lower is better)
Translates to: WQETLKLSIWVVSLDYLEEILIK*YHPTVN
Trigger: GTTAACAGTGGGATGATACCACTTTATAAGTATCTC...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR TCA 90 bp AAAGCCACACCTTTACATAGGTATGTACTCATCCTTTTGTCTGTATTAGTAAGAAAAAAGACCAAAGAATaGAAAGCCAGGACTCAGAAT +
Preference number: 2 (lower is better)
Translates to: KATPLHRYVLILLSVLVRKKTKE*KARTQN
Trigger: ATTCTGAGTCCTGGCTTTTCATTCTTTGGTCTTTTT...TCTTACTAATACAGACAAAAGGATGAGTACATACCTATGTAAAGGTGTGGCTTT
36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATGTTCTTTCTTATTCATaGAACAAACTGTCCTATGAC +
Preference number: 2 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHVLSYS*NKLSYD
Trigger: GTCATAGGACAGTTTGTTCCATGAATAAGAAAGAAC...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 72 bp GCCGTACGAGCAGGCTATGGGGTTTTAGGGTGGCTCTaGCAGCTGCCTCAAGGTACTACTGCCAAAGACTGT +
Preference number: 3 (lower is better)
Translates to: AVRAGYGVLGWL*QLPQGTTAKDC
Trigger: ACAGTCTTTGGCAGTAGTACCTTGAGGCAGCTGGCAGAGCCACCCTAAAACCCCATAGCCTGCTCGTACGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CCA 72 bp CCAAGAGGCAGTGGGAGACCTAGGATTATTCTGGGATaGATAGTTGGGAGGATGCCCAGCCTCCTCTGGTCC +
Preference number: 3 (lower is better)
Translates to: PRGSGRPRIILG*IVGRMPSLLWS
Trigger: GGACCAGAGGAGGCTGGGCATCCTCCCAACTATCCATCCCAGAATAATCCTAGGTCTCCCACTGCCTCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 72 bp TGTAGAGCCGTACGAGCAGGCTATGGGGTTTTAGGGTaGCTCTGCCAGCTGCCTCAAGGTACTACTGCCAAA +
Preference number: 3 (lower is better)
Translates to: CRAVRAGYGVLG*LCQLPQGTTAK
Trigger: TTTGGCAGTAGTACCTTGAGGCAGCTGGCAGAGCCACCCTAAAACCCCATAGCCTGCTCGTACGGCTCTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR TCA 72 bp ACAGTATTACCCAGCTGTGAACCCTGCATGCCACCGTaGAAACCTTCCAGGCAAGATGTACCCACCCAGTGG +
Preference number: 3 (lower is better)
Translates to: TVLPSCEPCMPP*KPSRQDVPTQW
Trigger: CCACTGGGTGGGTACATCTTGCCTGGAAGGTTTTCACGGTGGCATGCAGGGTTCACAGCTGGGTAATACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR GCA 72 bp TTTAGGGTGGCTCTGCCAGCTGCCTCAAGGTACTACTaGCAAAGACTGTGCCCTCTGCCATGCTGGACTATA +
Preference number: 3 (lower is better)
Translates to: FRVALPAASRYY*QRLCPLPCWTI
Trigger: TATAGTCCAGCATGGCAGAGGGCACAGTCTTTGGCAGTAGTACCTTGAGGCAGCTGGCAGAGCCACCCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR GCA 72 bp CTGCCAGCTGCCTCAAGGTACTACTGCCAAAGACTGTaGCCTCTGCCATGCTGGACTATAACATCTGGTTCT +
Preference number: 3 (lower is better)
Translates to: LPAASRYYCQRL*PLPCWTITSGS
Trigger: AGAACCAGATGTTATAGTCCAGCATGGCAGAGGGCACAGTCTTTGGCAGTAGTACCTTGAGGCAGCTGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTGGTCCTCATTGTTaGAGCTACCACTGTTCCACT +
Preference number: 3 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTSGPHC*SYHCST
Trigger: AGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGA...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 72 bp AGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTaGAGTGACAGGGCCAGTGAACAACACATCTCCTTA +
Preference number: 3 (lower is better)
Translates to: SPLPTCTALYSL*SDRASEQHISL
Trigger: TAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 72 bp CAAAACTGCATGTGTCTCCCACCCTTCTTGTCTGTTTaGCTTCAGGAAGTTCACTCTCTCGCCCACCCTTTT +
Preference number: 3 (lower is better)
Translates to: QNCMCLPPFLSV*LQEVHSLAHPF
Trigger: AAAAGGGTGGGCGAGAGAGTGAACTTCCTGAAGGCAAACAGACAAGAAGGGTGGGAGACACATGCAGTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCTGGGCATGGCAGCTCTaGAAATTTAGCCTGCCAGTT +
Preference number: 3 (lower is better)
Translates to: LYANVTNNRASFLPSPYCWAWQL*KFSLPV
Trigger: AACTGGCAGGCTAAATTTCAAGAGCTGCCATGCCCA...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 72 bp GATAGTCAGCTGCCACCATTCATGAAGGCAAAGTACTaGGCTGGATGTTTAAGACTGATGGCTACAGCCAGT +
Preference number: 3 (lower is better)
Translates to: DSQLPPFMKAKY*AGCLRLMATAS
Trigger: ACTGGCTGTAGCCATCAGTCTTAAACATCCAGCGCAGTACTTTGCCTTCATGAATGGTGGCAGCTGACTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043836.8
ENSMUST00000110061.2
ENSMUST00000110062.8
3UTR CCA 72 bp GGTAATGAGAAAGGTGGCCTGGAATTGTCTCAGTTCTaGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACT +
Preference number: 3 (lower is better)
Translates to: GNEKGGLELSQF*LFLLSQVCLPT
Trigger: AGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGACAATTCCAGGCCACCTTTCTCATTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCGCCTGCCAGTTTAGCTaGTCATCATGTTCTTTCTTA +
Preference number: 3 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAACQFS*SSCSFL
Trigger: TAAGAAAGAACATGATGACAAGCTAAACTGGCAGGC...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGGGCATGGCAGCTCTaGAAATTTAGCCTGCCAGTT +
Preference number: 3 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYWAWQL*KFSLPV
Trigger: AACTGGCAGGCTAAATTTCAAGAGCTGCCATGCCCA...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTATCCAGCATGGTTCTTTaGTCAGGCACTTCACAAAAG +
Preference number: 3 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLSSMVL*SGTSQK
Trigger: CTTTTGTGAAGTGCCTGACAAAAGAACCATGCTGGA...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp TTCATGAAGGCAAAGTACTGCGCTGGATGTTTAAGACTGATGGCTACAGCCAGTTGTCTCCCACCCTTCTaGTCTGTTTGCCTTCAGGAA +
Preference number: 3 (lower is better)
Translates to: FMKAKYCAGCLRLMATASCLPPF*SVCLQE
Trigger: TTCCTGAAGGCAAACAGACAAGAAGGGTGGGAGACA...ACTGGCTGTAGCCATCAGTCTTAAACATCCAGCGCAGTACTTTGCCTTCATGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp AGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGTAAGATCGTGTTACCCTCAATCTaGGTCAAAGAAGCTTCTCTG +
Preference number: 3 (lower is better)
Translates to: SNRLLPFLVCSPELGGKIVLPSI*VKEASL
Trigger: CAGAGAAGCTTCTTTGACCAAGATTGAGGGTAACAC...GATCTTACCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTAGCCTGCCAGTTTAGCTaGTCATCATGTTCTTTCTTA +
Preference number: 3 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLACQFS*SSCSFL
Trigger: TAAGAAAGAACATGATGACAAGCTAAACTGGCAGGC...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CCAAAAATGAACACACAGGGCATCCTGGGTGTGAAGAGTGGAGAATCTAGAGGCTCTATCCTTCCTCCTTaGTGGATTATACCAGTGATG +
Preference number: 3 (lower is better)
Translates to: PKMNTQGILGVKSGESRGSILPP*WIIPVM
Trigger: CATCACTGGTATAATCCACAAAGGAGGAAGGATAGA...GCCTCTAGATTCTCCACTCTTCACACCCAGGATGCCCTGTGTGTTCATTTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp CTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGATaGCCAAACACAACGGCTGCCATTGGTAATGAGAAA +
Preference number: 3 (lower is better)
Translates to: LSPRFLTYPHTR*PNTTAAIGNEK
Trigger: TTTCTCATTACCAATGGCAGCCGTTGTGTTTGGTCATCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp CAGGAGATTCATATTTTGCCCGACATCACGCAGATCTaGCAGGGAAGAGTCTGGCTCCAGAACACAGTTTTA +
Preference number: 3 (lower is better)
Translates to: QEIHILPDITQI*QGRVWLQNTVL
Trigger: TAAAACTGTGTTCTGGAGCCAGACTCTTCCCTGTCAGATCTGCGTGATGTCGGGCAAAATATGAATCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
3UTR CCA 72 bp GCTCCAAATGCTCCTAACTTCAAGTGTGAACCTCTGTaGGCTAGCACATCTTGGGTCACCATGGATATTCTT +
Preference number: 3 (lower is better)
Translates to: APNAPNFKCEPL*ASTSWVTMDIL
Trigger: AAGAATATCCATGGTGACCCAAGATGTGCTAGCCCACAGAGGTTCACACTTGAAGTTAGGAGCATTTGGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CTCAAGGTACTACTGCCAAAGACTGTGCCCTCTGCCATGCTGGACTATAACATCAACAGAGAAGAGAGGTaGGGAGTATATTACCAAAAC +
Preference number: 3 (lower is better)
Translates to: LKVLLPKTVPSAMLDYNINREER*GVYYQN
Trigger: GTTTTGGTAATATACTCCCAACCTCTCTTCTCTGTT...GATGTTATAGTCCAGCATGGCAGAGGGCACAGTCTTTGGCAGTAGTACCTTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATTTAGCTTCAGTTCTTaGTTCCTTTGCTTCATCTTG +
Preference number: 3 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTFSFSS*FLCFIL
Trigger: CAAGATGAAGCAAAGGAACAAAGAACTGAAGCTAAA...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
3UTR-3UTR CAA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTCCAGCATGGTTCTTTaGTCAGGCACTTCACAAAAG +
Preference number: 3 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYSSMVL*SGTSQK
Trigger: CTTTTGTGAAGTGCCTGACAAAAGAACCATGCTGGA...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp TGGAATGTCCCCCATGGGCATATGAGATTGAACACCTaGTCCCAAATTGGTGCCTCTGTTTTGAGAAGTTGT +
Preference number: 3 (lower is better)
Translates to: WNVPHGHMRLNT*SQIGASVLRSC
Trigger: ACAACTTCTCAAAACAGAGGCACCAATTTGGGATCAGGTGTTCAATCTCATATGCCCATGGGGGACATTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR GCA 72 bp AGAAATAAGGAAGCTGACTCCAGGAGATTCATATTTTaGCCGACATCACGCAGATCTGACAGGGAAGAGTCT +
Preference number: 3 (lower is better)
Translates to: RNKEADSRRFIF*PTSRRSDREES
Trigger: AGACTCTTCCCTGTCAGATCTGCGTGATGTCGGGCAAAATATGAATCTCCTGGAGTCAGCTTCCTTATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
3UTR CCA 72 bp TTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTaGAAATGGCCATCTAGCATTCATGTGCAGAAAGCA +
Preference number: 3 (lower is better)
Translates to: LPFMTCACLKCV*KWPSSIHVQKA
Trigger: TGCTTTCTGCACATGAATGCTAGATGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CCCATTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCATGGAGGGAGCTTGCTaGCTTTTTCATTTTTCTTGT +
Preference number: 3 (lower is better)
Translates to: PIFYPSSFVDYTSDGHGSMEGAC*LFHFSC
Trigger: ACAAGAAAAATGAAAAAGCAAGCAAGCTCCCTCCAT...GCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CCAGTGAACAACACATCTCCTTATCTGAGATGCCTTCAGTCTGGCCCAGAGCTAGGCCAAACTAGCAAATaGGATGAGATACTTATAAAG +
Preference number: 3 (lower is better)
Translates to: PVNNTSPYLRCLQSGPELGQTSK*DEILIK
Trigger: CTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCC...TAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp CATTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTaGTGGGCATGGCAGCTCTTGAAATTTAGCCTGCCA +
Preference number: 3 (lower is better)
Translates to: HFLSFLLCGLYQ*WAWQLLKFSLP
Trigger: TGGCAGGCTAAATTTCAAGAGCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR GCA 72 bp ACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATaGCTTCAGTCTGGCCCAGAGCTAACATTTTTATAT +
Preference number: 3 (lower is better)
Translates to: TGPVNNTSPYLR*LQSGPELTFLY
Trigger: ATATAAAAATGTTAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 72 bp ATAATGGAGGCTGAGTTATACTTCCCCATGGAGTTATaGGGAAATGCCTTTCCAGCATGGTTCTTTTGTCAG +
Preference number: 3 (lower is better)
Translates to: IMEAELYFPMEL*GNAFPAWFFCQ
Trigger: CTGACAAAAGAACCATGCTGGAAAGGCATTTCCCCATAACTCCATGGGGAAGTATAACTCAGCCTCCATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 72 bp TTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATaGCCATCTAGCATTCATGTGCAGAAAGCATCAGTC +
Preference number: 3 (lower is better)
Translates to: FMTCACLKCVWK*PSSIHVQKASV
Trigger: GACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGAACAAGACACTCCCTTaGATCTCAATGATAGTAACA +
Preference number: 3 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVNKTLP*ISMIVT
Trigger: TGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTT...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp GCTTTCATAATGCTAGGTGCTATACAGACTGGTGGGTaGGAAATTCATCAACAGTATTACCCAGCTGTGAAC +
Preference number: 3 (lower is better)
Translates to: AFIMLGAIQTGG*EIHQQYYPAVN
Trigger: GTTCACAGCTGGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATTATGAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR GCA 72 bp ACTTCCTTCCTGCTGACTAGCTTTCATAATGCTAGGTaGTATACAGACTGGTGGGTGAGAAATTCATCAACA +
Preference number: 3 (lower is better)
Translates to: TSFLLTSFHNAR*YTDWWVRNSST
Trigger: TGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATTATGAAAGCTAGTCAGCAGGAAGGAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CCA 72 bp CTGACTAGCTTTCATAATGCTAGGTGCTATACAGACTaGTGGGTGAGAAATTCATCAACAGTATTACCCAGC +
Preference number: 3 (lower is better)
Translates to: LTSFHNARCYTD*WVRNSSTVLPS
Trigger: GCTGGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATTATGAAAGCTAGTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR TCA 72 bp TCATGTATAGTTCTGGATAAGTTTTGGATGAGTGGATaGGCTGCCAAATCACCCTTGGATTTGGCATTAGCA +
Preference number: 3 (lower is better)
Translates to: SCIVLDKFWMSG*AAKSPLDLALA
Trigger: TGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAACTTATCCAGAACTATACATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp CAACAGTCATTTAAGTGTCATAGTGTGTGGCACAGATaGAAAGAGACAAACAGATTCAGAAGCTGTCCAGCA +
Preference number: 3 (lower is better)
Translates to: QQSFKCHSVWHR*KETNRFRSCPA
Trigger: TGCTGGACAGCTTCTGAATCTGTTTGTCTCTTTTCATCTGTGCCACACACTATGACACTTAAATGACTGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 72 bp ACTAGCTTTCATAATGCTAGGTGCTATACAGACTGGTaGGTGAGAAATTCATCAACAGTATTACCCAGCTGT +
Preference number: 3 (lower is better)
Translates to: TSFHNARCYTDW*VRNSSTVLPSC
Trigger: ACAGCTGGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATTATGAAAGCTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CCA 72 bp ATCTGGTTCTCCCTAATGATGGTTCTGTCAGGGATTTaGTCATGGTTCAAACTAGACAAAAACGTGTTTCTG +
Preference number: 3 (lower is better)
Translates to: IWFSLMMVLSGI*SWFKLDKNVFL
Trigger: CAGAAACACGTTTTTGTCTAGTTTGAACCATGACCAAATCCCTGACAGAACCATCATTAGGGAGAACCAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTTCTGGTCCTCATTGTTaGAGCTACCACTGTTCCACT +
Preference number: 3 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSSGPHC*SYHCST
Trigger: AGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGA...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCTCTATCCTTCCTCCTTaGTGGATTATACCAGTGATG +
Preference number: 3 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTSILPP*WIIPVM
Trigger: CATCACTGGTATAATCCACAAAGGAGGAAGGATAGA...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTAGATGGCAGGAAACATaGAAGCTATCTATCTGGGTG +
Preference number: 3 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSRWQET*KLSIWV
Trigger: CACCCAGATAGATAGCTTCAATGTTTCCTGCCATCT...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp AGGCACTTCACAAAAGTGATGGGTGCTTGTAAAATATaGAGATGGCAGGAAACATTGAAGCTATCTATCTGG +
Preference number: 3 (lower is better)
Translates to: RHFTKVMGACKI*RWQETLKLSIW
Trigger: CCAGATAGATAGCTTCAATGTTTCCTGCCATCTTCATATTTTACAAGCACCCATCACTTTTGTGAAGTGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp AAAGCCACACCTTTACATAGGTATGTACTCATCCTTTTGTCTGTATTAGTAAGAGTGTTACCCTCAATCTaGGTCAAAGAAGCTTCTCTG +
Preference number: 3 (lower is better)
Translates to: KATPLHRYVLILLSVLVRVLPSI*VKEASL
Trigger: CAGAGAAGCTTCTTTGACCAAGATTGAGGGTAACAC...TCTTACTAATACAGACAAAAGGATGAGTACATACCTATGTAAAGGTGTGGCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR TCA 72 bp GCTAGCACATCTTGGGTCACCATGGATATTCTTTTATaGAGAGTAGAGACTTCAAGTGGAACTTTGAAAACT +
Preference number: 3 (lower is better)
Translates to: ASTSWVTMDILL*RVETSSGTLKT
Trigger: AGTTTTCAAAGTTCCACTTGAAGTCTCTACTCTTCATAAAAGAATATCCATGGTGACCCAAGATGTGCTAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 72 bp AAATATAGTTATGGTTTGAATATGGAATGTCCCCCATaGGCATATGAGATTGAACACCTGATCCCAAATTGG +
Preference number: 3 (lower is better)
Translates to: KYSYGLNMECPP*AYEIEHLIPNW
Trigger: CCAATTTGGGATCAGGTGTTCAATCTCATATGCCCATGGGGGACATTCCATATTCAAACCATAACTATATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR-3UTR CAA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGAACAAGACACTCCCTTaGATCTCAATGATAGTAACA +
Preference number: 3 (lower is better)
Translates to: WQETLKLSIWVVSLDYLENKTLP*ISMIVT
Trigger: TGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTT...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CCA 72 bp GCATACTTCACAGTGGCCATTCATTCTTCTGATGAATaGTTATTTATAGCTTGTTGCCACTATAAGCAAACA +
Preference number: 3 (lower is better)
Translates to: AYFTVAIHSSDE*LFIACCHYKQT
Trigger: TGTTTGCTTATAGTGGCAACAAGCTATAAATAACCATTCATCAGAAGAATGAATGGCCACTGTGAAGTATGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CCA 72 bp GGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTaGTATCATCCCACTGTTAACTTTAGATATCCTCTC +
Preference number: 3 (lower is better)
Translates to: GQTSKLDEILIK*YHPTVNFRYPL
Trigger: GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR-3UTR CAA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTATGCAGAGGTGTGGTTaGCTACTTACTTTATTATAC +
Preference number: 3 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSMQRCG*LLTLLY
Trigger: GTATAATAAAGTAAGTAGCAAACCACACCTCTGCAT...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR TCA 72 bp CAGACTCTTCTCAAGGAGTCTTCAATGAGTCTTTCTTaGTTCAAAATGGACTGGAAAACAAGATCAGATAAA +
Preference number: 3 (lower is better)
Translates to: QTLLKESSMSLS*FKMDWKTRSDK
Trigger: TTTATCTGATCTTGTTTTCCAGTCCATTTTGAATCAAGAAAGACTCATTGAAGACTCCTTGAGAAGAGTCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp TGCCCAGCCTCCTCTGGTCCTCATTGTTTGAGCTACCACTGTTCCACTGGCTTCCCACCTCTAGCAGAGTaGTGTCACCTCTGTAGAGAG +
Preference number: 4 (lower is better)
Translates to: CPASSGPHCLSYHCSTGFPPLAE*CHLCRE
Trigger: CTCTCTACAGAGGTGACATCACTCTGCTAGAGGTGG...GAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp ATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCCCTTCATGACATGTGCCTGGGGCCAGCAGCTCTGTaGATACAGCCATCCACACCT +
Preference number: 4 (lower is better)
Translates to: ITGLVSSHPPIALHDMCLGPAAL*IQPSTP
Trigger: AGGTGTGGATGGCTGTATTCACAGAGCTGCTGGCCC...CAGGCACATGTCATGAAGGGCAATAGGGGGATGGGAGGAAACTAGCCCTGTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp GGGAAGAGTCTGGCTCCAGAACACAGTTTTAAAGAGTGCCATCCTTCTCTCCGGTTCTCACACGCACCCTaGAGAGGAGGATGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GKSLAPEHSFKECHPSLRFSHAP*RGGCCS
Trigger: GGAGCAGCATCCTCCTCTGCAGGGTGCGTGTGAGAA...CCGGAGAGAAGGATGGCACTCTTTAAAACTGTGTTCTGGAGCCAGACTCTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR CCA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATTTGTCTTCGGAAGCTaGGCTGGGCACAGGGGTGGT +
Preference number: 4 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTFVFGS*AGHRGG
Trigger: ACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAA...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CCAGTGAACAACACATCTCCTTATCTGAGATGCCTTCAGTCTGGCCCAGAGCTATTTGTCTTCGGAAGCTaGGCTGGGCACAGGGGTGGT +
Preference number: 4 (lower is better)
Translates to: PVNNTSPYLRCLQSGPELFVFGS*AGHRGG
Trigger: ACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAA...TAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCTCCTCAAAAGAAACCTaGGCCCACCTGCTTCTTGGC +
Preference number: 4 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCSSKET*AHLLLG
Trigger: GCCAAGAAGCAGGTGGGCTCAGGTTTCTTTTGAGGA...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR GCA 90 bp GGGAAGAGTCTGGCTCCAGAACACAGTTTTAAAGAGTGCCATCCTTCTCTCCGGTCCAGTAGCAGAACTTaGACACTTTGGGGTCCGAGC +
Preference number: 4 (lower is better)
Translates to: GKSLAPEHSFKECHPSLRSSSRT*TLWGPS
Trigger: GCTCGGACCCCAAAGTGTGCAAGTTCTGCTACTGGA...CCGGAGAGAAGGATGGCACTCTTTAAAACTGTGTTCTGGAGCCAGACTCTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR CCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCGCCTCGCTGGAACCTTaGCTTTCTGCAAACACAGCA +
Preference number: 4 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCASLEP*LSANTA
Trigger: TGCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGC...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACAAGGCTCTGGCCCTTCTaGATCTTCTTTCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTRLWPF*IFFHVS
Trigger: GCTGACATGAAAGAAGATTCAGAAGGGCCAGAGCCT...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR TCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGTGGCCCATCAGGACCTaGAGTGTTTTCTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVWPIRT*SVFCLA
Trigger: AGCGAGGCAGAAAACACTTCAGGTCCTGATGGGCCA...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGAAACCTGAGCCCACCTaGTTCTTGGCTCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMKPEPT*FLALPF
Trigger: GAAGGGCAGAGCCAAGAAGCAGGTGGGCTCAGGTTT...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR CCA 90 bp TGCCCAGCCTCCTCTGGTCCTCATTGTTTGAGCTACCACTGTTCCACTGGCTTCTTCCATAGAGGAGCTTaGGGATTCTGCCTCAGTTTT +
Preference number: 4 (lower is better)
Translates to: CPASSGPHCLSYHCSTGFFHRGA*GFCLSF
Trigger: AAAACTGAGGCAGAATCCCCAAGCTCCTCTATGGAA...GAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CAA 72 bp ATAGTTGGGAGGATGCCCAGCCTCCTCTGGTCCTCATaGTTTGAGCTACCACTGTTCCACTGGCTTCTTAAG +
Preference number: 4 (lower is better)
Translates to: IVGRMPSLLWSS*FELPLFHWLLK
Trigger: CTTAAGAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCATCCTCCCAACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CAA 72 bp GCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATaGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAA +
Preference number: 4 (lower is better)
Translates to: AESISPLPTCTA*YSLCSDRASEQ
Trigger: TTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp TCCCAAAAGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGAGGTGCTCTCTCCCATaGCATTCTCCACCATTTCTC +
Preference number: 4 (lower is better)
Translates to: SQKQQIAAISRLLPRTRWRCSLP*HSPPFL
Trigger: GAGAAATGGTGGAGAATGTCATGGGAGAGAGCACCT...CCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCTTTTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp CCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCAGCCCTACAGTATGGATaGCATACTTTGCAGGGAGGT +
Preference number: 4 (lower is better)
Translates to: PLLPFMTCACLKCVWKWPALQYG*HTLQGG
Trigger: ACCTCCCTGCAAAGTATGTCATCCATACTGTAGGGC...TGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp CCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCAGGAAGACACAGAAGATaGTTCGATCCACCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: PLLPFMTCACLKCVWKWPGRHRR*FDPPPG
Trigger: ACCAGGAGGTGGATCGAATCATCTTCTGTGTCTTCC...TGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCGCCACATGTGATTTTTaGATGTCCAGTCTCACAGCC +
Preference number: 4 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCATCDF*MSSLTA
Trigger: GGCTGTGAGACTGGACATGCAAAAATCACATGTGGC...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGCCTGCTTCTTGGCTCTaGCCTTCCATTTCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVPASWL*PSISSA
Trigger: TGCGGAAGAAATGGAAGGGCAGAGCCAAGAAGCAGG...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR GCA 90 bp CCAAAAATGAACACACAGGGCATCCTGGGTGTGAAGAGTGGAGAATCTAGAGGCGGAACCTTGGCTTTCTaGAAACACAGCAGGTGCATC +
Preference number: 4 (lower is better)
Translates to: PKMNTQGILGVKSGESRGGTLAF*KHSRCI
Trigger: GATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCC...GCCTCTAGATTCTCCACTCTTCACACCCAGGATGCCCTGTGTGTTCATTTTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTATCTGCTTCTTGGCTCTaGCCTTCCATTTCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLSASWL*PSISSA
Trigger: TGCGGAAGAAATGGAAGGGCAGAGCCAAGAAGCAGA...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGGGTGTTGACACCATCTaGTTCTTGGCTCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMGVDTI*FLALPF
Trigger: GAAGGGCAGAGCCAAGAAGCAGATGGTGTCAACACC...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp AAGAGTCTGGCTCCAGAACACAGTTTTAAAGAGTGCCATCCTTCTCTCCGGCATTGCAGAGGAGGATGCTaGTCCAGTAGCAGAACTTGC +
Preference number: 4 (lower is better)
Translates to: KSLAPEHSFKECHPSLRHCRGGC*SSSRTC
Trigger: GCAAGTTCTGCTACTGGAGCAGCATCCTCCTCTGCA...ATGCCGGAGAGAAGGATGGCACTCTTTAAAACTGTGTTCTGGAGCCAGACTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
3UTR CAA 72 bp ACAAAACTGCATGTGTCTCCCACCCTTCTTGTCTGTTaGCCTTCAGGAAGTTCACTCTCTCGCCCACCCTTT +
Preference number: 4 (lower is better)
Translates to: TKLHVSPTLLVC*PSGSSLSRPPF
Trigger: AAAGGGTGGGCGAGAGAGTGAACTTCCTGAAGGCAAACAGACAAGAAGGGTGGGAGACACATGCAGTTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp CCCATTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCGTCAACATCAGGACCTaGAGTGTTTTCTGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: PIFYPSSFVDYTSDGHGSVNIRT*SVFCLA
Trigger: AGCGAGGCAGAAAACACTTCAGGTCCTGATGTTGAC...GCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR GCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCTTCTCCACCTTCCTGTaGTTCTTGGTCATCTATCAG +
Preference number: 4 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCFSTFL*FLVIYQ
Trigger: CTGATAGATGACCAAGAAGCACAGGAAGGTGGAGAA...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp ACGAAATGCAGCTGGAGAATTAGAGCAAAGGACCCCCTTTCTTCCATGAACTTGCAGCAGGTGCATCCTTaGCTTGAGCTTCTCCACCTT +
Preference number: 4 (lower is better)
Translates to: TKCSWRIRAKDPLSSMNLQQVHP*LELLHL
Trigger: AAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTG...CAAGTTCATGGAAGAAAGGGGGTCCTTTGCTCTAATTCTCCAGCTGCATTTCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp ATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCCCTTCATGACATGTGCCTGATTGGCCCTACAGTATaGATGACATACTTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: ITGLVSSHPPIALHDMCLIGPTV*MTYFAG
Trigger: CCCTGCAAAGTATGTCATCCATACTGTAGGGCCAAT...CAGGCACATGTCATGAAGGGCAATAGGGGGATGGGAGGAAACTAGCCCTGTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGAGTGGCCTCTGGCTATTaGCCCTACAGTATGGATGAC +
Preference number: 4 (lower is better)
Translates to: VLDEWMSCQITLGFGISRVASGY*PYSMDD
Trigger: GTCATCCATACTGTAGGGCCAATAGCCAGAGGCCAC...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CCCATTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCTGGGAACCATTAATGTaGCCTCTGGCTATTGGCCCT +
Preference number: 4 (lower is better)
Translates to: PIFYPSSFVDYTSDGHGSWEPLM*PLAIGP
Trigger: AGGGCCAATAGCCAGAGGCCACATTAATGGTTCCCA...GCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp ATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCCCTTCATGACATGTGCCTGTTCCATAGAGGAGCTTaGGGATTCTGCCTCAGTTTT +
Preference number: 4 (lower is better)
Translates to: ITGLVSSHPPIALHDMCLFHRGA*GFCLSF
Trigger: AAAACTGAGGCAGAATCCCCAAGCTCCTCTATGGAA...CAGGCACATGTCATGAAGGGCAATAGGGGGATGGGAGGAAACTAGCCCTGTTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGCCTTCCTGTGCTTCTTaGTCATCTATCAGGGGGATC +
Preference number: 4 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMPSCAS*SSIRGI
Trigger: GATCCCCCTGATAGATGACCAAGAAGCACAGGAAGG...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACGCCTCGCTGGAACCTTaGCTTTCTGCAAACACAGCA +
Preference number: 4 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYASLEP*LSANTA
Trigger: TGCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGC...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCATGTTTTCTGCCTCGCTaGAACCTTGGCTTTCTGCAA +
Preference number: 4 (lower is better)
Translates to: PLLPFMTCACLKCVWKWPCFLPR*NLGFLQ
Trigger: TTGCAGAAAGCCAAGGTTCCAGCGAGGCAGAAAACA...TGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CAA 72 bp ATCCCCACACAAGATGACCAAACACAACGGCTGCCATaGGTAATGAGAAAGGTGGCCTGGAATTGTCTCAGT +
Preference number: 4 (lower is better)
Translates to: IPTQDDQTQRLP*VMRKVAWNCLS
Trigger: ACTGAGACAATTCCAGGCCACCTTTCTCATTACCAATGGCAGCCGTTGTGTTTGGTCATCTTGTGTGGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp AGGTCAGTGTTAGTTAGACACGCAACAAAACTGCATGTGTCTCCCACCCTTCTTAGGTGCTCTCTCCCATaGCATTCTCCACCATTTCTC +
Preference number: 4 (lower is better)
Translates to: RSVLVRHATKLHVSPTLLRCSLP*HSPPFL
Trigger: GAGAAATGGTGGAGAATGTCATGGGAGAGAGCACCT...AAGAAGGGTGGGAGACACATGCAGTTTTGTTGCGTGTCTAACTAACACTGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCCACCAGCTTCAAGGATaGTTGATAGCAATTTGCAAG +
Preference number: 4 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAHQLQG*LIAICK
Trigger: CTTGCAAATTGCTATCAATCATCCTTGAAGCTGGTG...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACGGAAGACACAGAAGATaGTTCGATCCACCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYGRHRR*FDPPPG
Trigger: ACCAGGAGGTGGATCGAATCATCTTCTGTGTCTTCC...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp ACGAAATGCAGCTGGAGAATTAGAGCAAAGGACCCCCTTTCTTCCATGAACTTGCACCATCTCTGTGGATaGGACCAAGGAGATTCCTCA +
Preference number: 4 (lower is better)
Translates to: TKCSWRIRAKDPLSSMNLHHLCG*DQGDSS
Trigger: TGAGGAATCTCCTTGGTCTCATCCACAGAGATGGTG...CAAGTTCATGGAAGAAAGGGGGTCCTTTGCTCTAATTCTCCAGCTGCATTTCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR TCA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATTTACACCATCCACCTaGCTGTTCATGTCAACATCA +
Preference number: 4 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTFTPST*LFMSTS
Trigger: TGATGTTGACATGAACAGTCAGGTGGATGGTGTAAA...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR GCA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTAAAATGCCTGTTGAAATaGAGGGGAAAGCCACTGATC +
Preference number: 4 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLKCLLK*RGKPLI
Trigger: GATCAGTGGCTTTCCCCTGCATTTCAACAGGCATTT...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp TTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCTCTTCAGCAGGTGCATCCTTaGCTTGAGCTTCTCCACCTT +
Preference number: 4 (lower is better)
Translates to: FSILPPLWIIPVMGMAALQQVHP*LELLHL
Trigger: AAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTG...AAGAGCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CCAGTGAACAACACATCTCCTTATCTGAGATGCCTTCAGTCTGGCCCAGAGCTAATTGGCCCTACAGTATaGATGACATACTTTGCAGGG +
Preference number: 4 (lower is better)
Translates to: PVNNTSPYLRCLQSGPELIGPTV*MTYFAG
Trigger: CCCTGCAAAGTATGTCATCCATACTGTAGGGCCAAT...TAGCTCTGGGCCAGACTGAAGGCATCTCAGATAAGGAGATGTGTTGTTCACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGGCAAGGTCTTCCTTGTaGGAACCATTAATGTGGCCT +
Preference number: 4 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMARSSL*EPLMWP
Trigger: AGGCCACATTAATGGTTCCCACAAGGAAGACCTTGC...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GAAATAAGGAAGCTGACTCCAGGAGATTCATATTTTGCCCGACATCACGCAGATAGAACTTGCACACTTTaGGGTCCGAGCACCGCATTG +
Preference number: 4 (lower is better)
Translates to: EIRKLTPGDSYFARHHADRTCTL*GPSTAL
Trigger: CAATGCGGTGCTCGGACCCCAAAGTGTGCAAGTTCT...ATCTGCGTGATGTCGGGCAAAATATGAATCTCCTGGAGTCAGCTTCCTTATTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR TCA 90 bp CAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGGAGGGGCCAGCAGCTCTGTaGATACAGCCATCCACACCT +
Preference number: 4 (lower is better)
Translates to: QETLKLSIWVVSLDYLEEGPAAL*IQPSTP
Trigger: AGGTGTGGATGGCTGTATTCACAGAGCTGCTGGCCC...CTCCTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp CCAAAAATGAACACACAGGGCATCCTGGGTGTGAAGAGTGGAGAATCTAGAGGCCACCAGCTTCAAGGATaGTTGATAGCAATTTGCAAG +
Preference number: 4 (lower is better)
Translates to: PKMNTQGILGVKSGESRGHQLQG*LIAICK
Trigger: CTTGCAAATTGCTATCAATCATCCTTGAAGCTGGTG...GCCTCTAGATTCTCCACTCTTCACACCCAGGATGCCCTGTGTGTTCATTTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGACCCCTCACTCTTTGCTaGGTCATTCTCTTGTCCATT +
Preference number: 4 (lower is better)
Translates to: VLDEWMSCQITLGFGISRPLTLC*VILLSI
Trigger: AATGGACAAGAGAATGACTCAGCAAAGAGTGAGGGG...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCCCTTCCATGATAGAATaGTGCTCAGAGAAACATAGT +
Preference number: 4 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAPSMIE*CSEKHS
Trigger: ACTATGTTTCTCTGAGCACCATTCTATCATGGAAGG...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GGAAGAGTCTGGCTCCAGAACACAGTTTTAAAGAGTGCCATCCTTCTCTCCGGCGCTTTTCTTCATCTGTaGTGCTTCCTGAGTATTTTC +
Preference number: 4 (lower is better)
Translates to: GRVWLQNTVLKSAILLSGAFLHL*CFLSIF
Trigger: GAAAATACTCAGGAAGCACCACAGATGAAGAAAAGC...GCCGGAGAGAAGGATGGCACTCTTTAAAACTGTGTTCTGGAGCCAGACTCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR CCA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACGCAAGGTCTTCCTTGTaGGAACCATTAATGTGGCCT +
Preference number: 4 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYARSSL*EPLMWP
Trigger: AGGCCACATTAATGGTTCCCACAAGGAAGACCTTGC...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGTTTTCTGCCTCGCTaGAACCTTGGCTTTCTGCAA +
Preference number: 4 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYCFLPR*NLGFLQ
Trigger: TTGCAGAAAGCCAAGGTTCCAGCGAGGCAGAAAACA...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACAATCTTCTTGATTTGGTaGAAGGTCTTCTGTTTCCAT +
Preference number: 4 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTIFLIW*KVFCFH
Trigger: ATGGAAACAGAAGACCTTTCACCAAATCAAGAAGAT...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCTGGACCACTTTCATCTaGATCTTCTTTCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: LYANVTNNRASFLPSPYCWTTFI*IFFHVS
Trigger: GCTGACATGAAAGAAGATTCAGATGAAAGTGGTCCA...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp ACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATCTCCTTATCTGAGATGCTTTCTTCATCTGTGGTaGTTCCTGAGTATTTTCTTC +
Preference number: 4 (lower is better)
Translates to: TACAVTGPVNNTSPYLRCFLHLW*FLSIFF
Trigger: GAAGAAAATACTCAGGAAGCACCACAGATGAAGAAA...GCATCTCAGATAAGGAGATGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCTTTCTTCATCTGTGGTaGTTCCTGAGTATTTTCTTC +
Preference number: 4 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAFLHLW*FLSIFF
Trigger: GAAGAAAATACTCAGGAAGCACCACAGATGAAGAAA...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCTGGTTGTTCCACAATTaGGGCATCTTCTTGATTTGG +
Preference number: 4 (lower is better)
Translates to: LYANVTNNRASFLPSPYCWLFHN*GIFLIW
Trigger: CCAAATCAAGAAGATGCCGCAATTGTGGAACAACCA...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp CCCATTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCAGTTCTTTGTTCCTTTaGTTCATCTTGTGGCCCATC +
Preference number: 4 (lower is better)
Translates to: PIFYPSSFVDYTSDGHGSSSLFL*FILWPI
Trigger: GATGGGCCACAAGATGAAGCAAAGGAACAAAGAACT...GCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTAATCTTCTTGATTTGGTaGAAGGTCTTCTGTTTCCAT +
Preference number: 4 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLIFLIW*KVFCFH
Trigger: ATGGAAACAGAAGACCTTTCACCAAATCAAGAAGAT...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp TACAGTTTCCAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGATTCTCCACCTTCCTGTaGTTCTTGGTCATCTATCAG +
Preference number: 4 (lower is better)
Translates to: YSFQRILSPRFLTYPHTRFSTFL*FLVIYQ
Trigger: CTGATAGATGACCAAGAAGCACAGGAAGGTGGAGAA...TCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTGGAAACTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCGCTCTTCTTGTGGGGTaGAGAAAGGCCTTTAGGCTC +
Preference number: 4 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTALLVG*RKAFRL
Trigger: GAGCCTAAAGGCCTTTCTCCACCCCACAAGAAGAGC...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR CCA 90 bp CCCATTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCGAATCTTCATCTTTGTaGACTTCAGCTTTGTCTTCG +
Preference number: 4 (lower is better)
Translates to: PIFYPSSFVDYTSDGHGSESSSL*TSALSS
Trigger: CGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTC...GCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp AGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGTAAGATCATGCATCCATCATTTTaGCCTTTGCTCTTCATCTCT +
Preference number: 4 (lower is better)
Translates to: SNRLLPFLVCSPELGGKIMHPSF*PLLFIS
Trigger: AGAGATGAAGAGCAAAGGCCAAAATGATGGATGCAT...GATCTTACCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110062.8
3UTR CAA 72 bp CCAGTAGAGAGACATAGTCTGAGATCTGAAGTCCAGTaGCCTGTCCACACTAGAAGACCTGCATTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: PVERHSLRSEVQ*PVHTRRPAFFF
Trigger: AAAGAAAAATGCAGGTCTTCTAGTGTGGACAGGCAACTGGACTTCAGATCTCAGACTATGTCTCTCTACTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043836.8
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp TATTTTAGAAATAAGGAAGCTGACTCCAGGAGATTCATATTTTGCCCGACATCACCACCTCTAGCAGAGTaGTGTCACCTCTGTAGAGAG +
Preference number: 4 (lower is better)
Translates to: YFRNKEADSRRFIFCPTSPPLAE*CHLCRE
Trigger: CTCTCTACAGAGGTGACATCACTCTGCTAGAGGTGG...TGATGTCGGGCAAAATATGAATCTCCTGGAGTCAGCTTCCTTATTTCTAAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR TCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATCCACCTCTAGCAGAGTaGTGTCACCTCTGTAGAGAG +
Preference number: 4 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHPPLAE*CHLCRE
Trigger: CTCTCTACAGAGGTGACATCACTCTGCTAGAGGTGG...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGGCCCTACAGTATGGATaGCATACTTTGCAGGGAGGT +
Preference number: 4 (lower is better)
Translates to: WQETLKLSIWVVSLDYLEALQYG*HTLQGG
Trigger: ACCTCCCTGCAAAGTATGTCATCCATACTGTAGGGC...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp AATGCTAGGTGCTATACAGACTGGTGGGTGAGAAATTCATCAACAGTATTACCCGGCCTCTTTTCCTATTaGCCAAGCTGTAAGACTTTC +
Preference number: 4 (lower is better)
Translates to: NARCYTDWWVRNSSTVLPGLFSY*PSCKTF
Trigger: GAAAGTCTTACAGCTTGGGCAATAGGAAAAGAGGCC...GGGTAATACTGTTGATGAATTTCTCACCCACCAGTCTGTATAGCACCTAGCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043836.8
CDS-3UTR GCA 90 bp GATCTGACAGGGAAGAGTCTGGCTCCAGAACACAGTTTTAAAGAGTGCCATCCTTTTCTTCATCTGTGGTaGTTCCTGAGTATTTTCTTC +
Preference number: 4 (lower is better)
Translates to: DLTGKSLAPEHSFKECHPFLHLW*FLSIFF
Trigger: GAAGAAAATACTCAGGAAGCACCACAGATGAAGAAA...AGGATGGCACTCTTTAAAACTGTGTTCTGGAGCCAGACTCTTCCCTGTCAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR GCA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTAAGTATTGTCATCCTTTaGAGAATCTTCATCTTTGTG +
Preference number: 4 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLSIVIL*RIFIFV
Trigger: CACAAAGATGAAGATTCTGCAAAGGATGACAATACT...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp CAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGGAGGGAACCTTGGCTTTCTaGAAACACAGCAGGTGCATC +
Preference number: 4 (lower is better)
Translates to: QETLKLSIWVVSLDYLEEGTLAF*KHSRCI
Trigger: GATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCC...CTCCTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATGTGGCCTCTGGCTATTaGCCCTACAGTATGGATGAC +
Preference number: 4 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHVASGY*PYSMDD
Trigger: GTCATCCATACTGTAGGGCCAATAGCCAGAGGCCAC...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CATAGTCTGAGATCTGAAGTCCAGTTGCCTGTCCACACTAGAAGACCTGCATTTATGCATCCATCATTTTaGCCTTTGCTCTTCATCTCT +
Preference number: 4 (lower is better)
Translates to: HSLRSEVQLPVHTRRPAFMHPSF*PLLFIS
Trigger: AGAGATGAAGAGCAAAGGCCAAAATGATGGATGCAT...AAATGCAGGTCTTCTAGTGTGGACAGGCAACTGGACTTCAGATCTCAGACTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATACCATAAATGCCTGTTaGAATGCAGGGGAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: STGKGQTSKLDEILIKWYTINAC*NAGESH
Trigger: GTGGCTTTCCCCTGCATTTCAACAGGCATTTATGGT...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp CTGTATGCAAACGTGACTAATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCAGTATTGTCATCCTTTaGAGAATCTTCATCTTTGTG +
Preference number: 4 (lower is better)
Translates to: LYANVTNNRASFLPSPYCSIVIL*RIFIFV
Trigger: CACAAAGATGAAGATTCTGCAAAGGATGACAATACT...GCAATAGGGGGATGGGAGGAAACTAGCCCTGTTATTAGTCACGTTTGCATACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CCCAACTTGTGCTATAATTTGCAGCAAATTGGCTTTTTATTTCTTTTCTCAGCTGCTCTTCTTGTGGGGTaGAGAAAGGCCTTTAGGCTC +
Preference number: 4 (lower is better)
Translates to: PNLCYNLQQIGFLFLFSAALLVG*RKAFRL
Trigger: GAGCCTAAAGGCCTTTCTCCACCCCACAAGAAGAGC...AGCTGAGAAAAGAAATAAAAAGCCAATTTGCTGCAAATTATAGCACAAGTTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
CDS-3UTR TCA 90 bp TCATTTTTAAGTTTAATACCTTCTCAGTTCTCAATGTTGACTCCAGGAAGGTCAAGGTGCTCTCTCCCATaGCATTCTCCACCATTTCTC +
Preference number: 4 (lower is better)
Translates to: SFLSLIPSQFSMLTPGRSRCSLP*HSPPFL
Trigger: GAGAAATGGTGGAGAATGTCATGGGAGAGAGCACCT...TGACCTTCCTGGAGTCAACATTGAGAACTGAGAAGGTATTAAACTTAAAAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTACCATAAATGCCTGTTaGAATGCAGGGGAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSTINAC*NAGESH
Trigger: GTGGCTTTCCCCTGCATTTCAACAGGCATTTATGGT...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp CCAACTTGTGCTATAATTTGCAGCAAATTGGCTTTTTATTTCTTTTCTCAGCTGAGGCTCTGGCCCTTCTaGATCTTCTTTCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: PTCAIICSKLAFYFFSQLRLWPF*IFFHVS
Trigger: GCTGACATGAAAGAAGATTCAGAAGGGCCAGAGCCT...CAGCTGAGAAAAGAAATAAAAAGCCAATTTGCTGCAAATTATAGCACAAGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
CDS-3UTR GCA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCAAATGCCTGTTGAAATaGAGGGGAAAGCCACTGATC +
Preference number: 4 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTKCLLK*RGKPLI
Trigger: GATCAGTGGCTTTCCCCTGCATTTCAACAGGCATTT...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CTGAAGTCCAGTTGCCTGTCCACACTAGAAGACCTGCATTTTTCTTTAAAACTCCCTTCCATGATAGAATaGTGCTCAGAGAAACATAGT +
Preference number: 4 (lower is better)
Translates to: LKSSCLSTLEDLHFSLKLPSMIE*CSEKHS
Trigger: ACTATGTTTCTCTGAGCACCATTCTATCATGGAAGG...GAGTTTTAAAGAAAAATGCAGGTCTTCTAGTGTGGACAGGCAACTGGACTTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR CCA 90 bp GATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGATATCCTCTCTGGGAACCATTAATGTaGCCTCTGGCTATTGGCCCT +
Preference number: 4 (lower is better)
Translates to: DEILIKWYHPTVNFRYPLWEPLM*PLAIGP
Trigger: AGGGCCAATAGCCAGAGGCCACATTAATGGTTCCCA...GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATGCTTTGCTCTTCTTGTaGGGTGGAGAAAGGCCTTTA +
Preference number: 4 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHALLFL*GGERPL
Trigger: TAAAGGCCTTTCTCCACCCCACAAGAAGAGCAAAGC...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR TCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGATTGCGGCATCTTCTTaGTTTGGTGAAAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: WQETLKLSIWVVSLDYLEIAASS*FGERSS
Trigger: AGAAGACCTTTCACCAAATCAAGAAGATGCCGCAAT...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGTCGGAAAACCATAAATaGCTGTTGAAATGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: WQETLKLSIWVVSLDYLESENHK*LLKCRG
Trigger: TCCCCTGCATTTCAACAGGCATTTATGGTTTTCCGA...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp AATAGATTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTCTGGTTTCTTTGCTTTaGTCTTCTTGTGGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: NRLESQMKQDTPFDLNDSLVSLL*SSCGVE
Trigger: CTCCACCCCACAAGAAGAGCAAAGCAAAGAAACCAG...ACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAATCTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR GCA 90 bp CCCAACTTGTGCTATAATTTGCAGCAAATTGGCTTTTTATTTCTTTTCTCAGCTCTGGTTTCTTTGCTTTaGTCTTCTTGTGGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: PNLCYNLQQIGFLFLFSALVSLL*SSCGVE
Trigger: CTCCACCCCACAAGAAGAGCAAAGCAAAGAAACCAG...AGCTGAGAAAAGAAATAAAAAGCCAATTTGCTGCAAATTATAGCACAAGTTGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
CDS-3UTR GCA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATTGGTTGTTCCACAATTaGGGCATCTTCTTGATTTGG +
Preference number: 4 (lower is better)
Translates to: STGKGQTSKLDEILIKWYWLFHN*GIFLIW
Trigger: CCAAATCAAGAAGATGCCGCAATTGTGGAACAACCA...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GTCCAGTTGCCTGTCCACACTAGAAGACCTGCATTTTTCTTTAAAACTCACAAACCTTCCATGATAGAATaGTGCTCAGAGAAACATAGT +
Preference number: 4 (lower is better)
Translates to: VQLPVHTRRPAFFFKTHKPSMIE*CSEKHS
Trigger: ACTATGTTTCTCTGAGCACCATTCTATCATGGAAGG...TTTGTGAGTTTTAAAGAAAAATGCAGGTCTTCTAGTGTGGACAGGCAACTGGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR CCA 90 bp CCCAACTTGTGCTATAATTTGCAGCAAATTGGCTTTTTATTTCTTTTCTCAGCTGCTTTGCTCTTCTTGTaGGGTGGAGAAAGGCCTTTA +
Preference number: 4 (lower is better)
Translates to: PNLCYNLQQIGFLFLFSAALLFL*GGERPL
Trigger: TAAAGGCCTTTCTCCACCCCACAAGAAGAGCAAAGC...AGCTGAGAAAAGAAATAAAAAGCCAATTTGCTGCAAATTATAGCACAAGTTGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
3UTR CAA 72 bp GGTGGTAAGATCCTACTGCTGAAGACACAGCATACTTaGGTTACAGGACATACAGAAATCAATCTTGAATTG +
Preference number: 4 (lower is better)
Translates to: GGKILLLKTQHT*VTGHTEINLEL
Trigger: CAATTCAAGATTGATTTCTGTATGTCCTGTAACCAAAGTATGCTGTGTCTTCAGCAGTAGGATCTTACCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTATTGCGGCATCTTCTTaGTTTGGTGAAAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSIAASS*FGERSS
Trigger: AGAAGACCTTTCACCAAATCAAGAAGATGCCGCAAT...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR GCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATTATTGGAGATCTTCTTaGAGACTCTCTGTTGGCTCA +
Preference number: 4 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHYWRSS*RLSVGS
Trigger: TGAGCCAACAGAGAGTCTGCAAGAAGATCTCCAATA...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR CCA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCGAATCTTCATCTTTGTaGACTTCAGCTTTGTCTTCG +
Preference number: 4 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTESSSL*TSALSS
Trigger: CGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTC...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
3UTR CAA 72 bp TCTGCAGTGAGTACCTTTTTAATTAGGACTATTATGTaGAAGGTCTACTTCAGTCCTCTGTATGCAAACGTG +
Preference number: 4 (lower is better)
Translates to: SAVSTFLIRTIM*KVYFSPLYANV
Trigger: CACGTTTGCATACAGAGGACTGAAGTAGACCTTCAACATAATAGTCCTAATTAAAAAGGTACTCACTGCAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR TCA 90 bp ATTTTAGAAATAAGGAAGCTGACTCCAGGAGATTCATATTTTGCCCGACATCACATCTGTGGTGCTTCCTaGGTATTTTCTTCATCATTT +
Preference number: 4 (lower is better)
Translates to: ILEIRKLTPGDSYFARHHICGAS*VFSSSF
Trigger: AAATGATGAAGAAAATACTCAGGAAGCACCACAGAT...GTGATGTCGGGCAAAATATGAATCTCCTGGAGTCAGCTTCCTTATTTCTAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR GCA 90 bp GATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGATATCCTCTCTCGGAAAACCATAAATaGCTGTTGAAATGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: DEILIKWYHPTVNFRYPLSENHK*LLKCRG
Trigger: TCCCCTGCATTTCAACAGGCATTTATGGTTTTCCGA...GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp TATTTTAGAAATAAGGAAGCTGACTCCAGGAGATTCATATTTTGCCCGACATCACCTTCCATGATAGAATaGTGCTCAGAGAAACATAGT +
Preference number: 4 (lower is better)
Translates to: YFRNKEADSRRFIFCPTSPSMIE*CSEKHS
Trigger: ACTATGTTTCTCTGAGCACCATTCTATCATGGAAGG...TGATGTCGGGCAAAATATGAATCTCCTGGAGTCAGCTTCCTTATTTCTAAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR CCA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATCCTTCCATGATAGAATaGTGCTCAGAGAAACATAGT +
Preference number: 4 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHPSMIE*CSEKHS
Trigger: ACTATGTTTCTCTGAGCACCATTCTATCATGGAAGG...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTGCTTTTCTTCATCTGTaGTGCTTCCTGAGTATTTTC +
Preference number: 4 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSAFLHL*CFLSIF
Trigger: GAAAATACTCAGGAAGCACCACAGATGAAGAAAAGC...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CCA 90 bp GATGAGATACTTATAAAGTGGTATCATCCCACTGTTAACTTTAGATATCCTCTCAGTTTGCTTCTCCTCTaGACCACTTTCATCTTCACT +
Preference number: 4 (lower is better)
Translates to: DEILIKWYHPTVNFRYPLSLLLL*TTFIFT
Trigger: AGTGAAGATGAAAGTGGTCCAGAGGAGAAGCAAACT...GAGAGGATATCTAAAGTTAACAGTGGGATGATACCACTTTATAAGTATCTCATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
3UTR CAA 72 bp TATTATTACATCCATACATTAGTGTTACCCTCAATCTaGGTCAAAGAAGCTTCTCTGTGCAAAAGACAGGAG +
Preference number: 4 (lower is better)
Translates to: YYYIHTLVLPSI*VKEASLCKRQE
Trigger: CTCCTGTCTTTTGCACAGAGAAGCTTCTTTGACCAAGATTGAGGGTAACACTAATGTATGGATGTAATAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CAA 72 bp TTATTTATAGCTTGTTGCCACTATAAGCAAACATGTTaGCATAATTCGCTGGGGAAGACTAAAGCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: LFIACCHYKQTC*HNSLGKTKAKP
Trigger: TGGCTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCAACAAGCTATAAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043836.8
ENSMUST00000110062.8
3UTR CAA 72 bp TCATTTTTAAGTTTAATACCTTCTCAGTTCTCAATGTaGACTCCAGGAAGGTCAGTGTTAGTTAGACACGCA +
Preference number: 4 (lower is better)
Translates to: SFLSLIPSQFSM*TPGRSVLVRHA
Trigger: TGCGTGTCTAACTAACACTGACCTTCCTGGAGTCAACATTGAGAACTGAGAAGGTATTAAACTTAAAAATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR TCA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTATCTGTGGTGCTTCCTaGGTATTTTCTTCATCATTT +
Preference number: 4 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSICGAS*VFSSSF
Trigger: AAATGATGAAGAAAATACTCAGGAAGCACCACAGAT...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 90 bp GGGCTGGGCACAGGGGTGGTGTTGACACCATCTGCTTCTTGGCTCTaGCCTTCCATTTCTTCCGCAGTTTGCTTCTCCTCTGGACCACTT +
Preference number: 5 (lower is better)
Translates to: GLGTGVVLTPSASWL*PSISSAVCFSSGPL
Trigger: AAGTGGTCCAGAGGAGAAGCAAACTGCGGAAGAAATGGAAGGGCAGAGCCAAGAAGCAGATGGTGTCAACACCACCCCTGTGCCCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS GCA 90 bp GTCTGGAGTCTGGAACAGTGCTCAGCTGACTTCTCACACGCACCCTaGAGAGGAGGATGCTGCTCCAGTAGCAGAACTTGCACACTTTGG +
Preference number: 5 (lower is better)
Translates to: VWSLEQCSADFSHAP*RGGCCSSSRTCTLW
Trigger: CCAAAGTGTGCAAGTTCTGCTACTGGAGCAGCATCCTCCTCTGCAGGGTGCGTGTGAGAAGTCAGCTGAGCACTGTTCCAGACTCCAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR CAA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCGAGCCCACCTGCTTCTaGGCTCTGCCCTTCCATTTC +
Preference number: 5 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAEPTCF*ALPFHF
Trigger: GAAATGGAAGGGCAGAGCCAAGAAGCAGGTGGGCTC...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS TCA 90 bp CTGGAACCTTGGCTTTCTGCAAACACAGCAGGTGCATCCTTGCCTTaGGCTTCTCCACCTTCCTGTGCTTCTTGGTCATCTATCAGGGGG +
Preference number: 5 (lower is better)
Translates to: LEPWLSANTAGASLP*ASPPSCASWSSIRG
Trigger: CCCCCTGATAGATGACCAAGAAGCACAGGAAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 90 bp GTTTTCTGCCTCGCTGGAACCTTGGCTTTCTGCAAACACAGCAGGTaGATCCTTGCCTTGAGCTTCTCCACCTTCCTGTGCTTCTTGGTC +
Preference number: 5 (lower is better)
Translates to: VFCLAGTLAFCKHSR*ILALSFSTFLCFLV
Trigger: GACCAAGAAGCACAGGAAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGCAGAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 90 bp CCTCGCTGGAACCTTGGCTTTCTGCAAACACAGCAGGTGCATCCTTaGCTTGAGCTTCTCCACCTTCCTGTGCTTCTTGGTCATCTATCA +
Preference number: 5 (lower is better)
Translates to: PRWNLGFLQTQQVHP*LELLHLPVLLGHLS
Trigger: TGATAGATGACCAAGAAGCACAGGAAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CCA 90 bp TGCAGAATCTTCATCTTTGTGGACTTCAGCTTTGTCTTCGGAAGCTaGGCTGGGCACAGGGGTGGTGTTGACACCATCTCTGTGGATGAG +
Preference number: 5 (lower is better)
Translates to: CRIFIFVDFSFVFGS*AGHRGGVDTISVDE
Trigger: CTCATCCACAGAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
CDS CCA 90 bp TGCAGAATCTTCATCTTTGTGGACTTCAGCTTTGTCTTCGGAAGCTaGGCTGGGCACAGGGGTGGTGTTGACACCATCTGCTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: CRIFIFVDFSFVFGS*AGHRGGVDTICFLA
Trigger: AGCCAAGAAGCAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS CCA 90 bp CTTCATCTTGTGGCCCATCAGGACCTGAAGTGTTTTCTGCCTCGCTaGAACCTTGGCTTTCTGCAAACACAGCAGGTGCATCCTTGCCTT +
Preference number: 5 (lower is better)
Translates to: LHLVAHQDLKCFLPR*NLGFLQTQQVHPCL
Trigger: AAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGCAGAAAACACTTCAGGTCCTGATGGGCCACAAGATGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGGGCACAGGGGTGGTGTaGACACCATCTCTGTGGATG +
Preference number: 5 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVGTGVV*TPSLWM
Trigger: CATCCACAGAGATGGTGTCAACACCACCCCTGTGCC...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS CCA 90 bp TGCAAGGTCTTCCTTGTGGGAACCATTAATGTGGCCTCTGGCTATTaGCCCTACAGTATGGATGACATACTTTGCAGGGAGGTCGTAGCC +
Preference number: 5 (lower is better)
Translates to: CKVFLVGTINVASGY*PYSMDDILCREVVA
Trigger: GGCTACGACCTCCCTGCAAAGTATGTCATCCATACTGTAGGGCCAATAGCCAGAGGCCACATTAATGGTTCCCACAAGGAAGACCTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp CCACATGTACTGCATTGTACAGCCTGTGCAGTGACAGGGCCAGTGAACAACACATTTGCTTTGCTCTTCTaGTGGGGTGGAGAAAGGCCT +
Preference number: 5 (lower is better)
Translates to: PHVLHCTACAVTGPVNNTFALLF*WGGERP
Trigger: AGGCCTTTCTCCACCCCACAAGAAGAGCAAAGCAAA...TGTGTTGTTCACTGGCCCTGTCACTGCACAGGCTGTACAATGCAGTACATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR CAA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTGCCTCGCTGGAACCTaGGCTTTCTGCAAACACAGC +
Preference number: 5 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMCLAGT*AFCKHS
Trigger: GCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGCA...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TGCCCAGCCTCCTCTGGTCCTCATTGTTTGAGCTACCACTGTTCCACTGGCTTCCAGTTCTTTGTTCCTTaGCTTCATCTTGTGGCCCAT +
Preference number: 5 (lower is better)
Translates to: CPASSGPHCLSYHCSTGFQFFVP*LHLVAH
Trigger: ATGGGCCACAAGATGAAGCAAAGGAACAAAGAACTG...GAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS GCA 90 bp TGGGCTGCGACCTTCACTGGAGTCTTTAGAACTTTCTGGTTTCTTTaGTTTGCTCTTCTTGTGGGGTGGAGAAAGGCCTTTAGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: WAATFTGVFRTFWFL*FALLVGWRKAFRLW
Trigger: CCAGAGCCTAAAGGCCTTTCTCCACCCCACAAGAAGAGCAAAGCAAAGAAACCAGAAAGTTCTAAAGACTCCAGTGAAGGTCGCAGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
CDS CCA 90 bp GACTGTTCATGTCAACATCAGGACCTGAAGTGTTTTCTGCCTCGCTaGAACCTTGGCTTTCTGCAAACACAGCAGGTGCATCCTTGCCTT +
Preference number: 5 (lower is better)
Translates to: DCSCQHQDLKCFLPR*NLGFLQTQQVHPCL
Trigger: AAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGCAGAAAACACTTCAGGTCCTGATGTTGACATGAACAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
CDS-3UTR CAA 90 bp TGCCCAGCCTCCTCTGGTCCTCATTGTTTGAGCTACCACTGTTCCACTGGCTTCATGATTGATAGCAATTaGCAAGGTCTTCCTTGTGGG +
Preference number: 5 (lower is better)
Translates to: CPASSGPHCLSYHCSTGFMIDSN*QGLPCG
Trigger: CCCACAAGGAAGACCTTGCAAATTGCTATCAATCAT...GAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TGCCCAGCCTCCTCTGGTCCTCATTGTTTGAGCTACCACTGTTCCACTGGCTTCGCAGAATCTTCATCTTaGTGGACTTCAGCTTTGTCT +
Preference number: 5 (lower is better)
Translates to: CPASSGPHCLSYHCSTGFAESSS*WTSALS
Trigger: AGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGC...GAAGCCAGTGGAACAGTGGTAGCTCAAACAATGAGGACCAGAGGAGGCTGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGGACACCATCTGCTTCTaGGCTCTGCCCTTCCATTTC +
Preference number: 5 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVDTICF*ALPFHF
Trigger: GAAATGGAAGGGCAGAGCCAAGAAGCAGATGGTGTC...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp AGCAACAGATTGCTGCCATTTCTCGTTTGCTCCCCAGAACTAGGTGGTAAGATCTGTCTCCCACCCTTCTaGTCTGTTTGCCTTCAGGAA +
Preference number: 5 (lower is better)
Translates to: SNRLLPFLVCSPELGGKICLPPF*SVCLQE
Trigger: TTCCTGAAGGCAAACAGACAAGAAGGGTGGGAGACA...GATCTTACCACCTAGTTCTGGGGAGCAAACGAGAAATGGCAGCAATCTGTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043836.8
CDS-3UTR CAA 90 bp CCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCATCTGGTTTCTTTGCTTaGCTCTTCTTGTGGGGTGGA +
Preference number: 5 (lower is better)
Translates to: PLLPFMTCACLKCVWKWPSGFFA*LFLWGG
Trigger: TCCACCCCACAAGAAGAGCAAAGCAAAGAAACCAGA...TGGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS-3UTR CAA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGAGGGGATCACTTCTGGTaGTTCCACAATTGCGGCATC +
Preference number: 5 (lower is better)
Translates to: VLDEWMSCQITLGFGISRGDHFW*FHNCGI
Trigger: GATGCCGCAATTGTGGAACAACCAGAAGTGATCCCC...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 90 bp GCTCTTCTTGTGGGGTGGAGAAAGGCCTTTAGGCTCTGGCCCTTCTaGATCTTCTTTCATGTCAGCATCGGTTCCTTCATTGTTATCATC +
Preference number: 5 (lower is better)
Translates to: ALLVGWRKAFRLWPF*IFFHVSIGSFIVII
Trigger: GATGATAACAATGAAGGAACCGATGCTGACATGAAAGAAGATTCAGAAGGGCCAGAGCCTAAAGGCCTTTCTCCACCCCACAAGAAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000156619.2
CDS CCA 90 bp CTGTCTTTTACAGTATTGTCATCCTTTGCAGAATCTTCATCTTTGTaGACTTCAGCTTTGTCTTCGGAAGCTGGGCTGGGCACAGGGGTG +
Preference number: 5 (lower is better)
Translates to: LSFTVLSSFAESSSL*TSALSSEAGLGTGV
Trigger: CACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGATGACAATACTGTAAAAGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCCCTTCATGACATGTGCCTGTCATCATTTTGGCCTTaGCTCTTCATCTCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: ITGLVSSHPPIALHDMCLSSFWP*LFISSF
Trigger: GAAGGAAGAGATGAAGAGCAAAGGCCAAAATGATGA...CAGGCACATGTCATGAAGGGCAATAGGGGGATGGGAGGAAACTAGCCCTGTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp CCCCCTATTGCCCTTCATGACATGTGCCTGTCTGAAGTGTGTTTGGAAATGGCCGCAGAATCTTCATCTTaGTGGACTTCAGCTTTGTCT +
Preference number: 5 (lower is better)
Translates to: PPIALHDMCLSEVCLEMAAESSS*WTSALS
Trigger: AGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGC...GGCCATTTCCAAACACACTTCAGACAGGCACATGTCATGAAGGGCAATAGGGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ATAACAGGGCTAGTTTCCTCCCATCCCCCTATTGCCCTTCATGACATGTGCCTGTCCATTGGGAAGTTCTaGGTCACACACAGAATGATT +
Preference number: 5 (lower is better)
Translates to: ITGLVSSHPPIALHDMCLSIGKF*VTHRMI
Trigger: AATCATTCTGTGTGTGACCAAGAACTTCCCAATGGA...CAGGCACATGTCATGAAGGGCAATAGGGGGATGGGAGGAAACTAGCCCTGTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 90 bp GATCACTTCTGGTTGTTCCACAATTGCGGCATCTTCTTGATTTGGTaGAAGGTCTTCTGTTTCCATAGAGGAGCTTGGGGATTCTGCCTC +
Preference number: 5 (lower is better)
Translates to: DHFWLFHNCGIFLIW*KVFCFHRGAWGFCL
Trigger: GAGGCAGAATCCCCAAGCTCCTCTATGGAAACAGAAGACCTTTCACCAAATCAAGAAGATGCCGCAATTGTGGAACAACCAGAAGTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 90 bp ATCAGGGGGATCACTTCTGGTTGTTCCACAATTGCGGCATCTTCTTaGTTTGGTGAAAGGTCTTCTGTTTCCATAGAGGAGCTTGGGGAT +
Preference number: 5 (lower is better)
Translates to: IRGITSGCSTIAASS*FGERSSVSIEELGD
Trigger: ATCCCCAAGCTCCTCTATGGAAACAGAAGACCTTTCACCAAATCAAGAAGATGCCGCAATTGTGGAACAACCAGAAGTGATCCCCCTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 90 bp AGATCTTCTTGCAGACTCTCTGTTGGCTCATTTACACCATCCACCTaGCTGTTCATGTCAACATCAGGACCTGAAGTGTTTTCTGCCTCG +
Preference number: 5 (lower is better)
Translates to: RSSCRLSVGSFTPST*LFMSTSGPEVFSAS
Trigger: CGAGGCAGAAAACACTTCAGGTCCTGATGTTGACATGAACAGTCAGGTGGATGGTGTAAATGAGCCAACAGAGAGTCTGCAAGAAGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
CDS-3UTR CAA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTATCATCATTTTGGCCTTaGCTCTTCATCTCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLSSFWP*LFISSF
Trigger: GAAGGAAGAGATGAAGAGCAAAGGCCAAAATGATGA...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTGCATTGTACAGCCTGTGTTATTGGAGATCTTCTaGCAGACTCTCTGTTGGCTC +
Preference number: 5 (lower is better)
Translates to: MCRKHQSTSHMYCIVQPVLLEIF*QTLCWL
Trigger: GAGCCAACAGAGAGTCTGCAAGAAGATCTCCAATAA...CACAGGCTGTACAATGCAGTACATGTGGGAAGTGGACTGATGCTTTCTGCACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110064.8
CDS CCA 90 bp CCTCAGTTTTCCCCTCACTCTTTGCTGAGTCATTCTCTTGTCCATTaGGAAGTTCTTGGTCACACACAGAATGATTGGTCATGTCACTGT +
Preference number: 5 (lower is better)
Translates to: PQFSPHSLLSHSLVH*EVLGHTQNDWSCHC
Trigger: ACAGTGACATGACCAATCATTCTGTGTGTGACCAAGAACTTCCCAATGGACAAGAGAATGACTCAGCAAAGAGTGAGGGGAAAACTGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp AAGAGTCTGGCTCCAGAACACAGTTTTAAAGAGTGCCATCCTTCTCTCCGGCATTCATCATTTTGGCCTTaGCTCTTCATCTCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: KSLAPEHSFKECHPSLRHSSFWP*LFISSF
Trigger: GAAGGAAGAGATGAAGAGCAAAGGCCAAAATGATGA...ATGCCGGAGAGAAGGATGGCACTCTTTAAAACTGTGTTCTGGAGCCAGACTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS-3UTR CAA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGATTTGCAAGGTCTTCCTaGTGGGAACCATTAATGTGG +
Preference number: 5 (lower is better)
Translates to: VLDEWMSCQITLGFGISRFARSS*WEPLMW
Trigger: CCACATTAATGGTTCCCACAAGGAAGACCTTGCAAA...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ACGAAATGCAGCTGGAGAATTAGAGCAAAGGACCCCCTTTCTTCCATGAACTTGAACCATAAATGCCTGTaGAAATGCAGGGGAAAGCCA +
Preference number: 5 (lower is better)
Translates to: TKCSWRIRAKDPLSSMNLNHKCL*KCRGKP
Trigger: TGGCTTTCCCCTGCATTTCAACAGGCATTTATGGTT...CAAGTTCATGGAAGAAAGGGGGTCCTTTGCTCTAATTCTCCAGCTGCATTTCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp AATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGTACTCATTCTCTTGTCCATaGGGAAGTTCTTGGTCACAC +
Preference number: 5 (lower is better)
Translates to: NGHLAFMCRKHQSTSHMYSFSCP*GSSWSH
Trigger: GTGTGACCAAGAACTTCCCAATGGACAAGAGAATGA...GTACATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGATTTTCCCCTCACTCTTaGCTGAGTCATTCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: VLDEWMSCQITLGFGISRFSPHS*LSHSLV
Trigger: GACAAGAGAATGACTCAGCAAAGAGTGAGGGGAAAA...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp GGAAATGGCCATCTAGCATTCATGTGCAGAAAGCATCAGTCCACTTCCCACATGCGGCATCTTCTTGATTaGGTGAAAGGTCTTCTGTTT +
Preference number: 5 (lower is better)
Translates to: GNGHLAFMCRKHQSTSHMRHLLD*VKGLLF
Trigger: AAACAGAAGACCTTTCACCAAATCAAGAAGATGCCG...CATGTGGGAAGTGGACTGATGCTTTCTGCACATGAATGCTAGATGGCCATTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TTCATGAAGGCAAAGTACTGCGCTGGATGTTTAAGACTGATGGCTACAGCCAGTCCATCATTTTGGCCTTaGCTCTTCATCTCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: FMKAKYCAGCLRLMATASPSFWP*LFISSF
Trigger: GAAGGAAGAGATGAAGAGCAAAGGCCAAAATGATGG...ACTGGCTGTAGCCATCAGTCTTAAACATCCAGCGCAGTACTTTGCCTTCATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR CAA 90 bp CCAAAAATGAACACACAGGGCATCCTGGGTGTGAAGAGTGGAGAATCTAGAGGCCAGTATTGTCATCCTTaGCAGAATCTTCATCTTTGT +
Preference number: 5 (lower is better)
Translates to: PKMNTQGILGVKSGESRGQYCHP*QNLHLC
Trigger: ACAAAGATGAAGATTCTGCAAAGGATGACAATACTG...GCCTCTAGATTCTCCACTCTTCACACCCAGGATGCCCTGTGTGTTCATTTTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TCTCAGTTCTGGCTATTCCTCTTATCTCAGGTGTGCCTTCCCACTGTGACCCTACTGTCTTTTACAGTATaGTCATCCTTTGCAGAATCT +
Preference number: 5 (lower is better)
Translates to: SQFWLFLLSQVCLPTVTLLSFTV*SSFAES
Trigger: AGATTCTGCAAAGGATGACAATACTGTAAAAGACAG...TAGGGTCACAGTGGGAAGGCACACCTGAGATAAGAGGAATAGCCAGAACTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCTCTTCTGGTTGTTCCACAATaGCGGCATCTTCTTGATTTG +
Preference number: 5 (lower is better)
Translates to: FSILPPLWIIPVMGMAALLVVPQ*RHLLDL
Trigger: CAAATCAAGAAGATGCCGCAATTGTGGAACAACCAG...AAGAGCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp CACTCTGCTCTAACAAATATAGTTCGAAGGCAACAGTCATTTAAGTGTCATAGTTGCCTCGCTGGAACCTaGGCTTTCTGCAAACACAGC +
Preference number: 5 (lower is better)
Translates to: HSALTNIVRRQQSFKCHSCLAGT*AFCKHS
Trigger: GCTGTGTTTGCAGAAAGCCAAGGTTCCAGCGAGGCA...ACTATGACACTTAAATGACTGTTGCCTTCGAACTATATTTGTTAGAGCAGAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TTTTCTATCCTTCCTCCTTTGTGGATTATACCAGTGATGGGCATGGCAGCTCTTATGATTGATAGCAATTaGCAAGGTCTTCCTTGTGGG +
Preference number: 5 (lower is better)
Translates to: FSILPPLWIIPVMGMAALMIDSN*QGLPCG
Trigger: CCCACAAGGAAGACCTTGCAAATTGCTATCAATCAT...AAGAGCTGCCATGCCCATCACTGGTATAATCCACAAAGGAGGAAGGATAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp GTTTTGGATGAGTGGATGAGCTGCCAAATCACCCTTGGATTTGGCATTAGCAGATTTAGCTTCAGTTCTTaGTTCCTTTGCTTCATCTTG +
Preference number: 5 (lower is better)
Translates to: VLDEWMSCQITLGFGISRFSFSS*FLCFIL
Trigger: CAAGATGAAGCAAAGGAACAAAGAACTGAAGCTAAA...TCTGCTAATGCCAAATCCAAGGGTGATTTGGCAGCTCATCCACTCATCCAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TGCCACTATAAGCAAACATGTTTGCATAATTCGCTGGGGAAGACTAAAGCAAAGCCATCATTTTGGCCTTaGCTCTTCATCTCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: CHYKQTCLHNSLGKTKAKPSFWP*LFISSF
Trigger: GAAGGAAGAGATGAAGAGCAAAGGCCAAAATGATGG...CTTTGCTTTAGTCTTCCCCAGCGAATTATGCAAACATGTTTGCTTATAGTGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110062.8
CDS-3UTR CAA 90 bp GTCCAGTTGCCTGTCCACACTAGAAGACCTGCATTTTTCTTTAAAACTCACAAAGATGCATCCATCATTTaGGCCTTTGCTCTTCATCTC +
Preference number: 5 (lower is better)
Translates to: VQLPVHTRRPAFFFKTHKDASII*AFALHL
Trigger: GAGATGAAGAGCAAAGGCCAAAATGATGGATGCATC...TTTGTGAGTTTTAAAGAAAAATGCAGGTCTTCTAGTGTGGACAGGCAACTGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS TCA 90 bp GAGTCATTCTCTTGTCCATTGGGAAGTTCTTGGTCACACACAGAATaGTTGGTCATGTCACTGTCTTTTACAGTATTGTCATCCTTTGCA +
Preference number: 5 (lower is better)
Translates to: ESFSCPLGSSWSHTE*LVMSLSFTVLSSFA
Trigger: TGCAAAGGATGACAATACTGTAAAAGACAGTGACATGACCAATCATTCTGTGTGTGACCAAGAACTTCCCAATGGACAAGAGAATGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATTTTGCAAGGTCTTCCTaGTGGGAACCATTAATGTGG +
Preference number: 5 (lower is better)
Translates to: STGKGQTSKLDEILIKWYFARSS*WEPLMW
Trigger: CCACATTAATGGTTCCCACAAGGAAGACCTTGCAAA...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp CCCAACTTGTGCTATAATTTGCAGCAAATTGGCTTTTTATTTCTTTTCTCAGCTTTTGCTTTGCTCTTCTaGTGGGGTGGAGAAAGGCCT +
Preference number: 5 (lower is better)
Translates to: PNLCYNLQQIGFLFLFSAFALLF*WGGERP
Trigger: AGGCCTTTCTCCACCCCACAAGAAGAGCAAAGCAAA...AGCTGAGAAAAGAAATAAAAAGCCAATTTGCTGCAAATTATAGCACAAGTTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
CDS-3UTR CAA 90 bp TACAGTTTCCAGAGAATTCTCTCTCCCCGTTTCTTAACCTATCCCCACACAAGACAGTATTGTCATCCTTaGCAGAATCTTCATCTTTGT +
Preference number: 5 (lower is better)
Translates to: YSFQRILSPRFLTYPHTRQYCHP*QNLHLC
Trigger: ACAAAGATGAAGATTCTGCAAAGGATGACAATACTG...TCTTGTGTGGGGATAGGTTAAGAAACGGGGAGAGAGAATTCTCTGGAAACTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCTCATTCTCTTGTCCATaGGGAAGTTCTTGGTCACAC +
Preference number: 5 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTSFSCP*GSSWSH
Trigger: GTGTGACCAAGAACTTCCCAATGGACAAGAGAATGA...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp CAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGGAGTTTTCCCCTCACTCTTaGCTGAGTCATTCTCTTGTC +
Preference number: 5 (lower is better)
Translates to: QETLKLSIWVVSLDYLEEFSPHS*LSHSLV
Trigger: GACAAGAGAATGACTCAGCAAAGAGTGAGGGGAAAA...CTCCTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CCA 90 bp CATTCTCTTGTCCATTGGGAAGTTCTTGGTCACACACAGAATGATTaGTCATGTCACTGTCTTTTACAGTATTGTCATCCTTTGCAGAAT +
Preference number: 5 (lower is better)
Translates to: HSLVHWEVLGHTQND*SCHCLLQYCHPLQN
Trigger: ATTCTGCAAAGGATGACAATACTGTAAAAGACAGTGACATGACCAATCATTCTGTGTGTGACCAAGAACTTCCCAATGGACAAGAGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp CCCAACTTGTGCTATAATTTGCAGCAAATTGGCTTTTTATTTCTTTTCTCAGCTTCTGGTTTCTTTGCTTaGCTCTTCTTGTGGGGTGGA +
Preference number: 5 (lower is better)
Translates to: PNLCYNLQQIGFLFLFSASGFFA*LFLWGG
Trigger: TCCACCCCACAAGAAGAGCAAAGCAAAGAAACCAGA...AGCTGAGAAAAGAAATAAAAAGCCAATTTGCTGCAAATTATAGCACAAGTTGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000156619.2
CDS-3UTR CAA 90 bp TCCACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATTCCATTGGGAAGTTCTaGGTCACACACAGAATGATT +
Preference number: 5 (lower is better)
Translates to: STGKGQTSKLDEILIKWYSIGKF*VTHRMI
Trigger: AATCATTCTGTGTGTGACCAAGAACTTCCCAATGGA...ATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TTAGAGTCCCAAATGAAACAAGACACTCCCTTTGATCTCAATGATAGTAACACCCGGCATCTTCTTGATTaGGTGAAAGGTCTTCTGTTT +
Preference number: 5 (lower is better)
Translates to: LESQMKQDTPFDLNDSNTRHLLD*VKGLLF
Trigger: AAACAGAAGACCTTTCACCAAATCAAGAAGATGCCG...GGTGTTACTATCATTGAGATCAAAGGGAGTGTCTTGTTTCATTTGGGACTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp ACAGGAAAGGGCCAAACTAGCAAATTGGATGAGATACTTATAAAGTGGTATCATCTGGTTGTTCCACAATaGCGGCATCTTCTTGATTTG +
Preference number: 5 (lower is better)
Translates to: TGKGQTSKLDEILIKWYHLVVPQ*RHLLDL
Trigger: CAAATCAAGAAGATGCCGCAATTGTGGAACAACCAG...ATGATACCACTTTATAAGTATCTCATCCAATTTGCTAGTTTGGCCCTTTCCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp AAAACAGACTCTTCTCAAGGAGTCTTCAATGAGTCTTTCTTGATTCAAAATGGAGATGCATCCATCATTTaGGCCTTTGCTCTTCATCTC +
Preference number: 5 (lower is better)
Translates to: KTDSSQGVFNESFLIQNGDASII*AFALHL
Trigger: GAGATGAAGAGCAAAGGCCAAAATGATGGATGCATC...TCCATTTTGAATCAAGAAAGACTCATTGAAGACTCCTTGAGAAGAGTCTGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS-3UTR CAA 90 bp TGGCAGGAAACATTGAAGCTATCTATCTGGGTGGTATCCTTAGATTATTTAGAGCTGTCTTTTACAGTATaGTCATCCTTTGCAGAATCT +
Preference number: 5 (lower is better)
Translates to: WQETLKLSIWVVSLDYLELSFTV*SSFAES
Trigger: AGATTCTGCAAAGGATGACAATACTGTAAAAGACAG...CTCTAAATAATCTAAGGATACCACCCAGATAGATAGCTTCAATGTTTCCTGCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS-3UTR CAA 90 bp TATTTTAGAAATAAGGAAGCTGACTCCAGGAGATTCATATTTTGCCCGACATCAATTTTCTTCATCATTTaGGCCTTTGCTCTTCATCTC +
Preference number: 5 (lower is better)
Translates to: YFRNKEADSRRFIFCPTSIFFII*AFALHL
Trigger: GAGATGAAGAGCAAAGGCCAAAATGATGAAGAAAAT...TGATGTCGGGCAAAATATGAATCTCCTGGAGTCAGCTTCCTTATTTCTAAAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS GCA 72 bp GCTGACTTCTCACACGCACCCTGCAGAGGAGGATGCTaGTCCAGTAGCAGAACTTGCACACTTTGGGGTCCG +
Preference number: 6 (lower is better)
Translates to: ADFSHAPCRGGC*SSSRTCTLWGP
Trigger: CGGACCCCAAAGTGTGCAAGTTCTGCTACTGGAGCAGCATCCTCCTCTGCAGGGTGCGTGTGAGAAGTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS TCA 72 bp TGTCTTCGGAAGCTGGGCTGGGCACAGGGGTGGTGTTaGCACCATCTGCTTCTTGGCTCTGCCCTTCCATTT +
Preference number: 6 (lower is better)
Translates to: CLRKLGWAQGWC*HHLLLGSALPF
Trigger: AAATGGAAGGGCAGAGCCAAGAAGCAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS GCA 72 bp CCCTGCAGAGGAGGATGCTGCTCCAGTAGCAGAACTTaGACACTTTGGGGTCCGAGCACCGCATTGACGATT +
Preference number: 6 (lower is better)
Translates to: PCRGGCCSSSRT*TLWGPSTALTI
Trigger: AATCGTCAATGCGGTGCTCGGACCCCAAAGTGTGCAAGTTCTGCTACTGGAGCAGCATCCTCCTCTGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS GCA 72 bp CTGGAACAGTGCTCAGCTGACTTCTCACACGCACCCTaGAGAGGAGGATGCTGCTCCAGTAGCAGAACTTGC +
Preference number: 6 (lower is better)
Translates to: LEQCSADFSHAP*RGGCCSSSRTC
Trigger: GCAAGTTCTGCTACTGGAGCAGCATCCTCCTCTGCAGGGTGCGTGTGAGAAGTCAGCTGAGCACTGTTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS CAA 72 bp TTGTCTTCGGAAGCTGGGCTGGGCACAGGGGTGGTGTaGACACCATCTGCTTCTTGGCTCTGCCCTTCCATT +
Preference number: 6 (lower is better)
Translates to: LSSEAGLGTGVV*TPSASWLCPSI
Trigger: AATGGAAGGGCAGAGCCAAGAAGCAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS GCA 72 bp TCAGCTGACTTCTCACACGCACCCTGCAGAGGAGGATaGTGCTCCAGTAGCAGAACTTGCACACTTTGGGGT +
Preference number: 6 (lower is better)
Translates to: SADFSHAPCRGG*CSSSRTCTLWG
Trigger: ACCCCAAAGTGTGCAAGTTCTGCTACTGGAGCAGCATCCTCCTCTGCAGGGTGCGTGTGAGAAGTCAGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110063.8
CDS CCA 72 bp CTGGGCACAGGGGTGGTGTTGACACCATCTGCTTCTTaGCTCTGCCCTTCCATTTCTTCCGCAGTTTGCTTC +
Preference number: 6 (lower is better)
Translates to: LGTGVVLTPSAS*LCPSISSAVCF
Trigger: GAAGCAAACTGCGGAAGAAATGGAAGGGCAGAGCCAAGAAGCAGATGGTGTCAACACCACCCCTGTGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS CAA 72 bp TTGTCTTCGGAAGCTGGGCTGGGCACAGGGGTGGTGTaGACACCATCTCTGTGGATGAGACCAAGGAGATTC +
Preference number: 6 (lower is better)
Translates to: LSSEAGLGTGVV*TPSLWMRPRRF
Trigger: GAATCTCCTTGGTCTCATCCACAGAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
CDS CCA 72 bp TTCATCTTTGTGGACTTCAGCTTTGTCTTCGGAAGCTaGGCTGGGCACAGGGGTGGTGTTGACACCATCTGC +
Preference number: 6 (lower is better)
Translates to: FIFVDFSFVFGS*AGHRGGVDTIC
Trigger: GCAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS CAA 90 bp GCTGGAACCTTGGCTTTCTGCAAACACAGCAGGTGCATCCTTGCCTaGAGCTTCTCCACCTTCCTGTGCTTCTTGGTCATCTATCAGGGG +
Preference number: 6 (lower is better)
Translates to: AGTLAFCKHSRCILA*SFSTFLCFLVIYQG
Trigger: CCCCTGATAGATGACCAAGAAGCACAGGAAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTTCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 72 bp ACAGGGGTGGTGTTGACACCATCTGCTTCTTGGCTCTaGCCTTCCATTTCTTCCGCAGTTTGCTTCTCCTCT +
Preference number: 6 (lower is better)
Translates to: TGVVLTPSASWL*PSISSAVCFSS
Trigger: AGAGGAGAAGCAAACTGCGGAAGAAATGGAAGGGCAGAGCCAAGAAGCAGATGGTGTCAACACCACCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110067.8
CDS CCA 72 bp TTCATCTTTGTGGACTTCAGCTTTGTCTTCGGAAGCTaGGCTGGGCACAGGGGTGGTGTTGACACCATCTCT +
Preference number: 6 (lower is better)
Translates to: FIFVDFSFVFGS*AGHRGGVDTIS
Trigger: AGAGATGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
CDS CAA 72 bp ACACCTCCTCCTCCGAGAAGACTGGCATTTGCCGCATaGACGATTGCATCCACCTCTAGCAGAGTGATGTCA +
Preference number: 6 (lower is better)
Translates to: TPPPPRRLAFAA*TIASTSSRVMS
Trigger: TGACATCACTCTGCTAGAGGTGGATGCAATCGTCAATGCGGCAAATGCCAGTCTTCTCGGAGGAGGAGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CAA 72 bp TCCTTTGCAGAATCTTCATCTTTGTGGACTTCAGCTTaGTCTTCGGAAGCTGGGCTGGGCACAGGGGTGGTG +
Preference number: 6 (lower is better)
Translates to: SFAESSSLWTSA*SSEAGLGTGVV
Trigger: CACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 72 bp AACCTTGGCTTTCTGCAAACACAGCAGGTGCATCCTTaGCTTGAGCTTCTCCACCTTCCTGTGCTTCTTGGT +
Preference number: 6 (lower is better)
Translates to: NLGFLQTQQVHP*LELLHLPVLLG
Trigger: ACCAAGAAGCACAGGAAGGTGGAGAAGCTCAAGGCAAGGATGCACCTGCTGTGTTTGCAGAAAGCCAAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CAA 90 bp GTATTGTCATCCTTTGCAGAATCTTCATCTTTGTGGACTTCAGCTTaGTCTTCGGAAGCTGGGCTGGGCACAGGGGTGGTGTTGACACCA +
Preference number: 6 (lower is better)
Translates to: VLSSFAESSSLWTSA*SSEAGLGTGVVLTP
Trigger: TGGTGTCAACACCACCCCTGTGCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGATGACAATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 72 bp ATACTTTGCAGGGAGGTCGTAGCCACATGTGATTTTTaGATGTCCAGTCTCACAGCCGTTCAGGTTCCGACA +
Preference number: 6 (lower is better)
Translates to: ILCREVVATCDF*MSSLTAVQVPT
Trigger: TGTCGGAACCTGAACGGCTGTGAGACTGGACATGCAAAAATCACATGTGGCTACGACCTCCCTGCAAAGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CAA 72 bp CTGCCGCAGGCTCATTCGGAAAACCATAAATGCCTGTaGAAATGCAGGGGAAAGCCACTGATCGGAGGTTAT +
Preference number: 6 (lower is better)
Translates to: LPQAHSENHKCL*KCRGKPLIGGY
Trigger: ATAACCTCCGATCAGTGGCTTTCCCCTGCATTTCAACAGGCATTTATGGTTTTCCGAATGAGCCTGCGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CCA 72 bp TTCCTTGTGGGAACCATTAATGTGGCCTCTGGCTATTaGCCCTACAGTATGGATGACATACTTTGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: FLVGTINVASGY*PYSMDDILCRE
Trigger: CTCCCTGCAAAGTATGTCATCCATACTGTAGGGCCAATAGCCAGAGGCCACATTAATGGTTCCCACAAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CCA 72 bp CAATTTGCAAGGTCTTCCTTGTGGGAACCATTAATGTaGCCTCTGGCTATTGGCCCTACAGTATGGATGACA +
Preference number: 6 (lower is better)
Translates to: QFARSSLWEPLM*PLAIGPTVWMT
Trigger: TGTCATCCATACTGTAGGGCCAATAGCCAGAGGCCACATTAATGGTTCCCACAAGGAAGACCTTGCAAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CCA 72 bp ACAGTATTGTCATCCTTTGCAGAATCTTCATCTTTGTaGACTTCAGCTTTGTCTTCGGAAGCTGGGCTGGGC +
Preference number: 6 (lower is better)
Translates to: TVLSSFAESSSL*TSALSSEAGLG
Trigger: GCCCAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGATGACAATACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CCA 72 bp CTGTGCTTCTTGGTCATCTATCAGGGGGATCACTTCTaGTTGTTCCACAATTGCGGCATCTTCTTGATTTGG +
Preference number: 6 (lower is better)
Translates to: LCFLVIYQGDHF*LFHNCGIFLIW
Trigger: CCAAATCAAGAAGATGCCGCAATTGTGGAACAACCAGAAGTGATCCCCCTGATAGATGACCAAGAAGCACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 72 bp TGGTTGTTCCACAATTGCGGCATCTTCTTGATTTGGTaGAAGGTCTTCTGTTTCCATAGAGGAGCTTGGGGA +
Preference number: 6 (lower is better)
Translates to: WLFHNCGIFLIW*KVFCFHRGAWG
Trigger: TCCCCAAGCTCCTCTATGGAAACAGAAGACCTTTCACCAAATCAAGAAGATGCCGCAATTGTGGAACAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 72 bp TGCAGACTCTCTGTTGGCTCATTTACACCATCCACCTaGCTGTTCATGTCAACATCAGGACCTGAAGTGTTT +
Preference number: 6 (lower is better)
Translates to: CRLSVGSFTPST*LFMSTSGPEVF
Trigger: AAACACTTCAGGTCCTGATGTTGACATGAACAGTCAGGTGGATGGTGTAAATGAGCCAACAGAGAGTCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
CDS CCA 72 bp TCCCCTCACTCTTTGCTGAGTCATTCTCTTGTCCATTaGGAAGTTCTTGGTCACACACAGAATGATTGGTCA +
Preference number: 6 (lower is better)
Translates to: SPHSLLSHSLVH*EVLGHTQNDWS
Trigger: TGACCAATCATTCTGTGTGTGACCAAGAACTTCCCAATGGACAAGAGAATGACTCAGCAAAGAGTGAGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CAA 72 bp CATCTATCAGGGGGATCACTTCTGGTTGTTCCACAATaGCGGCATCTTCTTGATTTGGTGAAAGGTCTTCTG +
Preference number: 6 (lower is better)
Translates to: HLSGGSLLVVPQ*RHLLDLVKGLL
Trigger: CAGAAGACCTTTCACCAAATCAAGAAGATGCCGCAATTGTGGAACAACCAGAAGTGATCCCCCTGATAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CAA 90 bp CCACCATTTCTCCAACCATTAGGGATGCATCCATCATTTTGGCCTTaGCTCTTCATCTCTTCCTTCCATGATAGAATGGTGCTCAGAGAA +
Preference number: 6 (lower is better)
Translates to: PPFLQPLGMHPSFWP*LFISSFHDRMVLRE
Trigger: TTCTCTGAGCACCATTCTATCATGGAAGGAAGAGATGAAGAGCAAAGGCCAAAATGATGGATGCATCCCTAATGGTTGGAGAAATGGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110061.2
ENSMUST00000110062.8
CDS TCA 72 bp ATCACTTCTGGTTGTTCCACAATTGCGGCATCTTCTTaGTTTGGTGAAAGGTCTTCTGTTTCCATAGAGGAG +
Preference number: 6 (lower is better)
Translates to: ITSGCSTIAASS*FGERSSVSIEE
Trigger: CTCCTCTATGGAAACAGAAGACCTTTCACCAAATCAAGAAGATGCCGCAATTGTGGAACAACCAGAAGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS CAA 72 bp TTTACAGTATTGTCATCCTTTGCAGAATCTTCATCTTaGTGGACTTCAGCTTTGTCTTCGGAAGCTGGGCTG +
Preference number: 6 (lower is better)
Translates to: FTVLSSFAESSS*WTSALSSEAGL
Trigger: CAGCCCAGCTTCCGAAGACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGATGACAATACTGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS TCA 72 bp TCTTGTCCATTGGGAAGTTCTTGGTCACACACAGAATaGTTGGTCATGTCACTGTCTTTTACAGTATTGTCA +
Preference number: 6 (lower is better)
Translates to: SCPLGSSWSHTE*LVMSLSFTVLS
Trigger: TGACAATACTGTAAAAGACAGTGACATGACCAATCATTCTGTGTGTGACCAAGAACTTCCCAATGGACAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8
CDS GCA 72 bp GGTCATGTCACTGTCTTTTACAGTATTGTCATCCTTTaGAGAATCTTCATCTTTGTGGACTTCAGCTTTGTC +
Preference number: 6 (lower is better)
Translates to: GHVTVFYSIVIL*RIFIFVDFSFV
Trigger: GACAAAGCTGAAGTCCACAAAGATGAAGATTCTGCAAAGGATGACAATACTGTAAAAGACAGTGACATGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078027.12
ENSMUST00000110064.8
ENSMUST00000110067.8