RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MACROD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036278

Ensembl transcript IDs: ENSMUST00000040261.7

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp CCTGTGATGGCCAGGCTGGAACAAGCTGTAGGCTTCTaGGACCTCTCAAAGCTGGGAACGAATTCCTACAGG +
Preference number: 3 (lower is better)
Translates to: PVMARLEQAVGF*DLSKLGTNSYR
Trigger: CCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTGGCCATCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CCA 90 bp GGGCTGAAGGAAAGGACAGAACCCTGTGATGGCCAGGCTGGAACAAGCTGTAGGGCTCGGCCGCCTGGCTaGCAGTGGGTTGGCCCACGG +
Preference number: 4 (lower is better)
Translates to: GLKERTEPCDGQAGTSCRARPPG*QWVGPR
Trigger: CCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGC...CCTACAGCTTGTTCCAGCCTGGCCATCACAGGGTTCTGTCCTTTCCTTCAGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp GCTGAGCCAGACAGCTTTATTAGGAGGCTTCTGAAAGGCAGGGCTGAAGGAAAGCGCCGCGCGCAGCTGTaGCAGGCGGCCGGACACTTG +
Preference number: 4 (lower is better)
Translates to: AEPDSFIRRLLKGRAEGKRRAQL*QAAGHL
Trigger: CAAGTGTCCGGCCGCCTGGCACAGCTGCGCGCGGCG...CTTTCCTTCAGCCCTGCCTTTCAGAAGCCTCCTAATAAAGCTGTCTGGCTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCAGGGAGACCAGCAGCTaGCCCGCCGCGCGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFRETSS*PAARSC
Trigger: ACAGCTGCGCGCGGCGGGGCAGCTGCTGGTCTCCCT...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp ACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCTACAGGCCCCGCGGCCCGATGAATaGAGCCGTCCACCCCTCCGC +
Preference number: 4 (lower is better)
Translates to: TSCRLLRPLKAGNEFLQAPRPDE*SRPPLR
Trigger: GCGGAGGGGTGGACGGCTGCATTCATCGGGCCGCGG...GGCCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR TCA 90 bp GCTGAGCCAGACAGCTTTATTAGGAGGCTTCTGAAAGGCAGGGCTGAAGGAAAGGATCCCGCGGCCCGATaGATGCAGCCGTCCACCCCT +
Preference number: 4 (lower is better)
Translates to: AEPDSFIRRLLKGRAEGKDPAAR*MQPSTP
Trigger: AGGGGTGGACGGCTGCATTCATCGGGCCGCGGGATC...CTTTCCTTCAGCCCTGCCTTTCAGAAGCCTCCTAATAAAGCTGTCTGGCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR TCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCGCACGGGAAAGCCACTaGGCGCAGCCGGTGCTCCAG +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFARESH*AQPVLQ
Trigger: CTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGC...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp GGGCTGAAGGAAAGGACAGAACCCTGTGATGGCCAGGCTGGAACAAGCTGTAGGGGCGCTCCCGGTAAATaGCCTCGTCCTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: GLKERTEPCDGQAGTSCRGAPGK*PRPSPG
Trigger: TCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCC...CCTACAGCTTGTTCCAGCCTGGCCATCACAGGGTTCTGTCCTTTCCTTCAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp GATGGCCAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGCAGCAGGTCCAGGCTaGTCAAGTAGCAGCTGCGGA +
Preference number: 4 (lower is better)
Translates to: DGQAGTSCRLLRPLKAGNAAGPG*SSSSCG
Trigger: TCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGC...GTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTGGCCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp ACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCTACAGGCCTCCAGTCGGTGGAGGTaGTCAGGTCCACCTTCGCGG +
Preference number: 4 (lower is better)
Translates to: TSCRLLRPLKAGNEFLQASSRWR*SGPPSR
Trigger: CCGCGAAGGTGGACCTGAGCACCTCCACCGACTGGA...GGCCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCCTCCTTCCAGTCGGTaGAGGTGCTCAGGTCCACCT +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFPPSSR*RCSGPP
Trigger: AGGTGGACCTGAGCACCTCCACCGACTGGAAGGAGG...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR TCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCGCCGATAGCCGCAAGTaGTCTTGGCTTTGCCGGTCT +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFADSRK*SWLCRS
Trigger: AGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGC...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp ACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCTACAGGCCCACAGCCAGCCCTTTTaGTGTCTCCTTCCACGTGGG +
Preference number: 4 (lower is better)
Translates to: TSCRLLRPLKAGNEFLQAHSQPF*CLLPRG
Trigger: CCCACGTGGAAGGAGACAGCAAAAGGGCTGGCTGTG...GGCCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCACCTTGTCCTTGTGCTaGTCCAGCCATTCCCGCAGC +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFTLSLC*SSHSRS
Trigger: GCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGT...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR GCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCTCCACCTTGTCCTTGTaGTGCTCCAGCCATTCCCGC +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFSTLSL*CSSHSR
Trigger: GCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGA...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CCA 90 bp ACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCTACAGGCCATGGGCCCCACCGTGTaGATGACATACTTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: TSCRLLRPLKAGNEFLQAMGPTV*MTYLAG
Trigger: GCCAGCCAAGTATGTCATCCACACGGTGGGGCCCAT...GGCCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CCA 90 bp GGGCTGAAGGAAAGGACAGAACCCTGTGATGGCCAGGCTGGAACAAGCTGTAGGTGTCCTTCTTATACTTaGGGTCCTCCACCTTCACAG +
Preference number: 4 (lower is better)
Translates to: GLKERTEPCDGQAGTSCRCPSYT*GPPPSQ
Trigger: CTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACA...CCTACAGCTTGTTCCAGCCTGGCCATCACAGGGTTCTGTCCTTTCCTTCAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CCA 90 bp ACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCTACAGGCCAGCCAAACACGCCTGTaGAGATGCACGGGAAAGCCA +
Preference number: 4 (lower is better)
Translates to: TSCRLLRPLKAGNEFLQASQTRL*RCTGKP
Trigger: TGGCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCT...GGCCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CCA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCCTTCAGAAAGGATTTaGCCTCCTTCCAGTCGGTGG +
Preference number: 4 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFPSERI*PPSSRW
Trigger: CCACCGACTGGAAGGAGGCCAAATCCTTTCTGAAGG...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS GCA 90 bp CCCAACTCCCGCCGAGAGCCACGCGCAGTAGCCGTGCTCGCCCAGTaGCACCAGGGGACCGCACGCACTGCCACGGGGCCGCGGGCCACC +
Preference number: 5 (lower is better)
Translates to: PNSRREPRAVAVLAQ*HQGTARTATGPRAT
Trigger: GGTGGCCCGCGGCCCCGTGGCAGTGCGTGCGGTCCCCTGGTGGCACTGGGCGAGCACGGCTACTGCGCGTGGCTCTCGGCGGGAGTTGGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS TCA 90 bp TGGCTTTGCCGGTCTCGCAGTTCTGTAGGGTGCGGCATTCGTCCGTaGGCAGGGATCCCGCGGCCCGATGAATGCAGCCGTCCACCCCTC +
Preference number: 5 (lower is better)
Translates to: WLCRSRSSVGCGIRP*AGIPRPDECSRPPL
Trigger: GAGGGGTGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 90 bp GCCATTCCCGCAGCGAAGCCAGCACTACTTCTGCAGCCTCCTCATTaGGGTAGCCAAACACGCCTGTGGAGATGCACGGGAAAGCCACTG +
Preference number: 5 (lower is better)
Translates to: AIPAAKPALLLQPPH*GSQTRLWRCTGKPL
Trigger: CAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS GCA 90 bp CTTGTGCTGCTCCAGCCATTCCCGCAGCGAAGCCAGCACTACTTCTaGAGCCTCCTCATTGGGGTAGCCAAACACGCCTGTGGAGATGCA +
Preference number: 5 (lower is better)
Translates to: LVLLQPFPQRSQHYF*SLLIGVAKHACGDA
Trigger: TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS GCA 90 bp TCCAGGAACACACAGATGATGAGCCGATCCACCTTGTCCTTGTGCTaGTCCAGCCATTCCCGCAGCGAAGCCAGCACTACTTCTGCAGCC +
Preference number: 5 (lower is better)
Translates to: SRNTQMMSRSTLSLC*SSHSRSEASTTSAA
Trigger: GGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGTGTTCCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp GATGGCCAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACCGATCCACCTTGTCCTaGTGCTGCTCCAGCCATTCC +
Preference number: 5 (lower is better)
Translates to: DGQAGTSCRLLRPLKAGNRSTLS*CCSSHS
Trigger: GGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCG...GTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTGGCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS GCA 90 bp TTCTCCAGGAACACACAGATGATGAGCCGATCCACCTTGTCCTTGTaGTGCTCCAGCCATTCCCGCAGCGAAGCCAGCACTACTTCTGCA +
Preference number: 5 (lower is better)
Translates to: FSRNTQMMSRSTLSL*CSSHSRSEASTTSA
Trigger: TGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCGCATCCACCTCCAGCTaGGTGATGTCCCCACGGTAC +
Preference number: 5 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFASTSS*VMSPRY
Trigger: GTACCGTGGGGACATCACCAAGCTGGAGGTGGATGC...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp GCTGAGCCAGACAGCTTTATTAGGAGGCTTCTGAAAGGCAGGGCTGAAGGAAAGTCACAGCCAGCCCTTTaGCTGTCTCCTTCCACGTGG +
Preference number: 5 (lower is better)
Translates to: AEPDSFIRRLLKGRAEGKSQPAL*LSPSTW
Trigger: CCACGTGGAAGGAGACAGCAAAAGGGCTGGCTGTGA...CTTTCCTTCAGCCCTGCCTTTCAGAAGCCTCCTAATAAAGCTGTCTGGCTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp CAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCATGAGCCGATCCACCTaGTCCTTGTGCTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: QAGTSCRLLRPLKAGNEFMSRST*SLCCSS
Trigger: GCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCAT...GAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp ACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACGAATTCCTACAGGCCTGTTCCTCTCTCTGCTaGTCACTCAGGCCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: TSCRLLRPLKAGNEFLQACSSLC*SLRPFR
Trigger: TCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACA...GGCCTGTAGGAATTCGTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp GATGGCCAGGCTGGAACAAGCTGTAGGCTTCTGAGACCTCTCAAAGCTGGGAACTTGTCCTTCTTATACTaGGGGTCCTCCACCTTCACA +
Preference number: 5 (lower is better)
Translates to: DGQAGTSCRLLRPLKAGNLSFLY*GSSTFT
Trigger: TGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAA...GTTCCCAGCTTTGAGAGGTCTCAGAAGCCTACAGCTTGTTCCAGCCTGGCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS-3UTR CAA 90 bp GGGCTGAAGGAAAGGACAGAACCCTGTGATGGCCAGGCTGGAACAAGCTGTAGGTTCTCATTCAGTTGCTaGTCCTTCTTATACTTGGGG +
Preference number: 5 (lower is better)
Translates to: GLKERTEPCDGQAGTSCRFSFSC*SFLYLG
Trigger: CCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAA...CCTACAGCTTGTTCCAGCCTGGCCATCACAGGGTTCTGTCCTTTCCTTCAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 90 bp GGTACAGGGAGATTTTCTCATTCAGTTGCTTGTCCTTCTTATACTTaGGGTCCTCCACCTTCACAGCCAGCCCTTTTGCTGTCTCCTTCC +
Preference number: 5 (lower is better)
Translates to: GTGRFSHSVACPSYT*GPPPSQPALLLSPS
Trigger: GGAAGGAGACAGCAAAAGGGCTGGCTGTGAAGGTGGAGGACCCCAAGTATAAGAAGGACAAGCAACTGAATGAGAAAATCTCCCTGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CAA 72 bp GCAGCTGCGGAGCTCGGCCGCCTGGCTGGCAGTGGGTaGGCCCACGGCGATGGGCCCCACCGTGTGGATGAC +
Preference number: 6 (lower is better)
Translates to: AAAELGRLAGSG*AHGDGPHRVDD
Trigger: GTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 72 bp CAGCTGCGGAGCTCGGCCGCCTGGCTGGCAGTGGGTTaGCCCACGGCGATGGGCCCCACCGTGTGGATGACA +
Preference number: 6 (lower is better)
Translates to: QLRSSAAWLAVG*PTAMGPTVWMT
Trigger: TGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 72 bp AGTAGCAGCTGCGGAGCTCGGCCGCCTGGCTGGCAGTaGGTTGGCCCACGGCGATGGGCCCCACCGTGTGGA +
Preference number: 6 (lower is better)
Translates to: SSSCGARPPGWQ*VGPRRWAPPCG
Trigger: TCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 72 bp TGCTCAAGTAGCAGCTGCGGAGCTCGGCCGCCTGGCTaGCAGTGGGTTGGCCCACGGCGATGGGCCCCACCG +
Preference number: 6 (lower is better)
Translates to: CSSSSCGARPPG*QWVGPRRWAPP
Trigger: CGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS TCA 72 bp CGGCATTCGTCCGTGAGCAGGGATCCCGCGGCCCGATaGATGCAGCCGTCCACCCCTCCGCCTCCAAGCAGG +
Preference number: 6 (lower is better)
Translates to: RHSSVSRDPAAR*MQPSTPPPPSR
Trigger: CCTGCTTGGAGGCGGAGGGGTGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CAA 90 bp GCTCAAGTAGCAGCTGCGGAGCTCGGCCGCCTGGCTGGCAGTGGGTaGGCCCACGGCGATGGGCCCCACCGTGTGGATGACATACTTGGC +
Preference number: 6 (lower is better)
Translates to: AQVAAAELGRLAGSG*AHGDGPHRVDDILG
Trigger: GCCAAGTATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS TCA 72 bp CGGTCTCGCAGTTCTGTAGGGTGCGGCATTCGTCCGTaGGCAGGGATCCCGCGGCCCGATGAATGCAGCCGT +
Preference number: 6 (lower is better)
Translates to: RSRSSVGCGIRP*AGIPRPDECSR
Trigger: ACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 72 bp GGCCCTTCAGAAAGGATTTGGCCTCCTTCCAGTCGGTaGAGGTGCTCAGGTCCACCTTCGCGGCCATGGCCA +
Preference number: 6 (lower is better)
Translates to: GPSERIWPPSSR*RCSGPPSRPWP
Trigger: TGGCCATGGCCGCGAAGGTGGACCTGAGCACCTCCACCGACTGGAAGGAGGCCAAATCCTTTCTGAAGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 72 bp CTGCAGCCTCCTCATTGGGGTAGCCAAACACGCCTGTaGAGATGCACGGGAAAGCCACTGAGCGCAGCCGGT +
Preference number: 6 (lower is better)
Translates to: LQPPHWGSQTRL*RCTGKPLSAAG
Trigger: ACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CCA 72 bp GCAGCGAAGCCAGCACTACTTCTGCAGCCTCCTCATTaGGGTAGCCAAACACGCCTGTGGAGATGCACGGGA +
Preference number: 6 (lower is better)
Translates to: AAKPALLLQPPH*GSQTRLWRCTG
Trigger: TCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CAA 72 bp AGGAACACACAGATGATGAGCCGATCCACCTTGTCCTaGTGCTGCTCCAGCCATTCCCGCAGCGAAGCCAGC +
Preference number: 6 (lower is better)
Translates to: RNTQMMSRSTLS*CCSSHSRSEAS
Trigger: GCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGTGTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS GCA 72 bp ACACAGATGATGAGCCGATCCACCTTGTCCTTGTGCTaGTCCAGCCATTCCCGCAGCGAAGCCAGCACTACT +
Preference number: 6 (lower is better)
Translates to: TQMMSRSTLSLC*SSHSRSEASTT
Trigger: AGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS GCA 72 bp AACACACAGATGATGAGCCGATCCACCTTGTCCTTGTaGTGCTCCAGCCATTCCCGCAGCGAAGCCAGCACT +
Preference number: 6 (lower is better)
Translates to: NTQMMSRSTLSL*CSSHSRSEAST
Trigger: AGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CAA 90 bp TCCTTCTCCAGGAACACACAGATGATGAGCCGATCCACCTTGTCCTaGTGCTGCTCCAGCCATTCCCGCAGCGAAGCCAGCACTACTTCT +
Preference number: 6 (lower is better)
Translates to: SFSRNTQMMSRSTLS*CCSSHSRSEASTTS
Trigger: AGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CAA 90 bp AGCAGGGAGCTGTTGGCAGCGTTGACAATGGCATCCACCTCCAGCTaGGTGATGTCCCCACGGTACAGGGAGATTTTCTCATTCAGTTGC +
Preference number: 6 (lower is better)
Translates to: SRELLAALTMASTSS*VMSPRYREIFSFSC
Trigger: GCAACTGAATGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTGCCAACAGCTCCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7
CDS CAA 72 bp CTGTTGGCAGCGTTGACAATGGCATCCACCTCCAGCTaGGTGATGTCCCCACGGTACAGGGAGATTTTCTCA +
Preference number: 6 (lower is better)
Translates to: LLAALTMASTSS*VMSPRYREIFS
Trigger: TGAGAAAATCTCCCTGTACCGTGGGGACATCACCAAGCTGGAGGTGGATGCCATTGTCAACGCTGCCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040261.7