RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LZTS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037703

Ensembl transcript IDs: ENSMUST00000045761.7, ENSMUST00000089561.10, ENSMUST00000110260.8

Found 330 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCGGCGGTAGCAGCCCAAGAAGGGAAAGGGGCTGGGGTACTCCCTaGCAACGCAGGCCTGCTGCCTCTATCTCCAACACGAGGCTTCCC +
Preference number: 1 (lower is better)
Translates to: GGGSSPRRERGWGTP*QRRPAASISNTRLP
Trigger: GGGAAGCCTCGTGTTGGAGATAGAGGCAGCAGGCCTGCGTTGCCAGGGAGTACCCCAGCCCCTTTCCCTTCTTGGGCTGCTACCGCCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 90 bp GGTGACGGTGGTGGCGGCGGTAGCAGCCCAAGAAGGGAAAGGGGCTaGGGTACTCCCTGGCAACGCAGGCCTGCTGCCTCTATCTCCAAC +
Preference number: 1 (lower is better)
Translates to: GDGGGGGSSPRRERG*GTPWQRRPAASISN
Trigger: GTTGGAGATAGAGGCAGCAGGCCTGCGTTGCCAGGGAGTACCCCAGCCCCTTTCCCTTCTTGGGCTGCTACCGCCGCCACCACCGTCACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 90 bp TCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGATACCTTGGTaGGGGAGGGGTCGGGCAGGTAGCCCTCTCAACCACAGGCAGGCC +
Preference number: 1 (lower is better)
Translates to: SELVQALRLEPKIPW*GRGRAGSPLNHRQA
Trigger: GGCCTGCCTGTGGTTGAGAGGGCTACCTGCCCGACCCCTCCCCCACCAAGGTATCTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 90 bp AGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATTGTACTCTaGCCTCTCCCATGCTCTCCTTGGCAGGAGGGTCTGGAGTGGTCA +
Preference number: 1 (lower is better)
Translates to: REPCSMRLGPHPIVL*PLPCSPWQEGLEWS
Trigger: TGACCACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 90 bp TGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGATACCTTaGTGGGGGAGGGGTCGGGCAGGTAGCCCTCTCAACCACAGGCAG +
Preference number: 1 (lower is better)
Translates to: CSELVQALRLEPKIP*WGRGRAGSPLNHRQ
Trigger: CTGCCTGTGGTTGAGAGGGCTACCTGCCCGACCCCTCCCCCACCAAGGTATCTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 90 bp CTGGGACCTCACCCCATTGTACTCTGCCCTCTCCCATGCTCTCCTTaGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAG +
Preference number: 1 (lower is better)
Translates to: LGPHPIVLCPLPCSP*QEGLEWSPTKAVLE
Trigger: CTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 90 bp TCTATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATaGGCCTGGGACCTCACCCCATTGTACTCTGCCCTCTCCCATGCT +
Preference number: 1 (lower is better)
Translates to: SISNTRLPQKGSLAP*AWDLTPLYSALSHA
Trigger: AGCATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 90 bp TGTGCAGCACACGTGGGGAAGGGAGATGAATGGAAGGGACATTGGTaGCTCCGACCTTCAGACAGGGCACGTGTCAGAAGGTTGTGCACG +
Preference number: 1 (lower is better)
Translates to: CAAHVGKGDEWKGHW*LRPSDRARVRRLCT
Trigger: CGTGCACAACCTTCTGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTCCCTTCCCCACGTGTGCTGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 90 bp GGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAAACCCTGCTaGGGACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAA +
Preference number: 1 (lower is better)
Translates to: GSGCQSSRQSRSKPC*GPPRRSCAERWRLQ
Trigger: TTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGTCCTCAGCAGGGTTTTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 90 bp TTCCCAGTCACTGTGGACCAGGCTCAGGGTCTGAATCACGTATTGTaGGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAA +
Preference number: 1 (lower is better)
Translates to: FPVTVDQAQGLNHVL*GIRRMGSGCQSSRQ
Trigger: TTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTCACAATACGTGATTCAGACCCTGAGCCTGGTCCACAGTGACTGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 90 bp CCAATCAAGGTCAAAACCCTGCTGAGGACCACCCAGAAGGAGCTGTaGAGAGAGGTGGAGACTACAAATAGGGCACTCCTATTTTTGTGG +
Preference number: 1 (lower is better)
Translates to: PIKVKTLLRTTQKEL*REVETTNRALLFLW
Trigger: CCACAAAAATAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGTCCTCAGCAGGGTTTTGACCTTGATTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 90 bp TGTGTTAATGCCTTTTCCCAGTCACTGTGGACCAGGCTCAGGGTCTaGATCACGTATTGTGAGGGATTAGAAGAATGGGCAGTGGTTGCC +
Preference number: 1 (lower is better)
Translates to: CVNAFSQSLWTRLRV*ITYCEGLEEWAVVA
Trigger: GGCAACCACTGCCCATTCTTCTAATCCCTCACAATACGTGATTCAGACCCTGAGCCTGGTCCACAGTGACTGGGAAAAGGCATTAACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 90 bp CTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTATTTTTGTaGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAG +
Preference number: 1 (lower is better)
Translates to: LCREVETTNRALLFL*GMHSLLNSHQSWEE
Trigger: CTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 90 bp AGAGAGAAATTAGAATTTCCCTGCCTGTCTTGGGGAGATAGAATCTaGGAGATCCTAGAGAAGGAAGTGACATTGACTGTCACGACCCAT +
Preference number: 1 (lower is better)
Translates to: REKLEFPCLSWGDRI*EILEKEVTLTVTTH
Trigger: ATGGGTCGTGACAGTCAATGTCACTTCCTTCTCTAGGATCTCTCAGATTCTATCTCCCCAAGACAGGCAGGGAAATTCTAATTTCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp CGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATCACCCACAAAGGCAGTaGTGGAGCTGCAAGGACGGG +
Preference number: 2 (lower is better)
Translates to: RGFPRKGALLHAPGTSPHHPQRQ*WSCKDG
Trigger: CCCGTCCTTGCAGCTCCAGCACTGCCTTTGTGGGTG...ATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGGGGAGCCTTGCTCCATaGGCCTGGGACCTCACCCCA +
Preference number: 2 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWGSLAP*AWDLTP
Trigger: TGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCC...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CAA 90 bp CTGCTGCCTCTATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTaGCTCCATGCGCCTGGGACCTCACCCCATTGTACTCTGCCCTCT +
Preference number: 2 (lower is better)
Translates to: LLPLSPTRGFPRKGA*LHAPGTSPHCTLPS
Trigger: AGAGGGCAGAGTACAATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATAGAGGCAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGGGGGCTGGTCACAGCTaGTTCGAGAACCTCTTTGGT +
Preference number: 2 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWGAGHS*FENLFG
Trigger: ACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCC...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAGGGAGCCTTGCTCCATaGGCCTGGGACCTCACCCCA +
Preference number: 2 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERGSLAP*AWDLTP
Trigger: TGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCC...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGAGAAGGGAAAGGGGCTaGGGTACTCCCTGGCAACGC +
Preference number: 2 (lower is better)
Translates to: TQRDTCSELVQALRLEPKRRERG*GTPWQR
Trigger: GCGTTGCCAGGGAGTACCCCAGCCCCTTTCCCTTCT...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAGGCAGTGCTGGAGCTaGAAGGACGGGGGACAAGTG +
Preference number: 2 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRERQCWS*KDGGQV
Trigger: CACTTGTCCCCCGTCCTTGCAGCTCCAGCACTGCCT...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACACCCCATTGTACTCTaGCCTCTCCCATGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: YLQHEASPEREPCSMRLGHPIVL*PLPCSP
Trigger: AGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTG...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCCTTCCCCTGCCAATCTaGCTGGGGAAGGAGAATAGC +
Preference number: 2 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPLPLPI*LGKENS
Trigger: GCTATTCTCCTTCCCCAGGCAGATTGGCAGGGGAAG...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCGATGTGCAGCACACGTaGGGAAGGGAGATGAATGGA +
Preference number: 2 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPDVQHT*GREMNG
Trigger: TCCATTCATCTCCCTTCCCCACGTGTGCTGCACATC...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCACAGGAGGGTCTGGAGTaGTCACCCACAAAGGCAGTG +
Preference number: 2 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSQEGLE*SPTKAV
Trigger: CACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTG...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTACTCCCATGCTCTCCTTaGCAGGAGGGTCTGGAGTGG +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLLPCSP*QEGLEW
Trigger: CCACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAG...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGACTCCCTCAGGCTGTGTaGCCTAGGAGGGCACAGACA +
Preference number: 2 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERLPQAV*PRRAQT
Trigger: TGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCCCCTGCCAATCTGCCTaGGGAAGGAGAATAGCACAT +
Preference number: 2 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPPCQSA*GRRIAH
Trigger: ATGTGCTATTCTCCTTCCCCAGGCAGATTGGCAGGG...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CAA 90 bp AGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCAGGGCTaGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTC +
Preference number: 2 (lower is better)
Translates to: SLLNSHQSWEEAGQG*GDLLTVVTNPLPPV
Trigger: GACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAAGGCAGTGCTGGAGCTaGAAGGACGGGGGACAAGTG +
Preference number: 2 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPRQCWS*KDGGQV
Trigger: CACTTGTCCCCCGTCCTTGCAGCTCCAGCACTGCCT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAACACGGGCAGACCCATaGAAGCTCCCTCAGGCTGTG +
Preference number: 2 (lower is better)
Translates to: EGLEEWAVVARVAANQGQTRADP*KLPQAV
Trigger: CACAGCCTGAGGGAGCTTGCATGGGTCTGCCCGTGT...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAACACGGGCAGACCCATaGAAGCTCCCTCAGGCTGTG +
Preference number: 2 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPTRADP*KLPQAV
Trigger: CACAGCCTGAGGGAGCTTGCATGGGTCTGCCCGTGT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGGATGTGCAGCACACGTaGGGAAGGGAGATGAATGGA +
Preference number: 2 (lower is better)
Translates to: TQRDTCSELVQALRLEPKDVQHT*GREMNG
Trigger: TCCATTCATCTCCCTTCCCCACGTGTGCTGCACATC...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTACAGGAGGGTCTGGAGTaGTCACCCACAAAGGCAGTG +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLQEGLE*SPTKAV
Trigger: CACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTG...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTACTTGGCAGGAGGGTCTaGAGTGGTCACCCACAAAGG +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLLGRRV*SGHPQR
Trigger: CCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAG...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAACTCCCATGCTCTCCTTaGCAGGAGGGTCTGGAGTGG +
Preference number: 2 (lower is better)
Translates to: EGLEEWAVVARVAANQGQLPCSP*QEGLEW
Trigger: CCACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAG...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGATGAAGGAGAGAGACTaGGAGCCTAGGGTCTGTCGA +
Preference number: 2 (lower is better)
Translates to: TQRDTCSELVQALRLEPKMKERD*EPRVCR
Trigger: TCGACAGACCCTAGGCTCCCAGTCTCTCTCCTTCAT...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTACGTGGGGAAGGGAGATaGATGGAAGGGACATTGGTG +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLRGEGR*MEGTLV
Trigger: CACCAATGTCCCTTCCATTCATCTCCCTTCCCCACG...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTAGGGGCTGGTCACAGCTaGTTCGAGAACCTCTTTGGT +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLGAGHS*FENLFG
Trigger: ACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCC...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGCTTCGAGAACCTCTTTaGTCTGGGGATGTGCAGCAC +
Preference number: 2 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRELREPL*SGDVQH
Trigger: GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAG...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTCCACAAAGGCAGTGCTaGAGCTGCAAGGACGGGGGA +
Preference number: 2 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAPQRQC*SCKDGG
Trigger: TCCCCCGTCCTTGCAGCTCCAGCACTGCCTTTGTGG...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACAGGAGGGTCTGGAGTaGTCACCCACAAAGGCAGTG +
Preference number: 2 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPQEGLE*SPTKAV
Trigger: CACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACTTGGCAGGAGGGTCTaGAGTGGTCACCCACAAAGG +
Preference number: 2 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPLGRRV*SGHPQR
Trigger: CCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCCTCCCTCAGGCTGTGTaGCCTAGGAGGGCACAGACA +
Preference number: 2 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGLPQAV*PRRAQT
Trigger: TGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAAACAGTCACCAGTCATaGGAGGAGGCTGGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: EGLEEWAVVARVAANQGQNSHQS*EEAGQG
Trigger: GCCCTGACCAGCCTCCTCCCATGACTGGTGACTGTT...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGCGTGGGGAAGGGAGATaGATGGAAGGGACATTGGTG +
Preference number: 2 (lower is better)
Translates to: PLGIEFPASALTSSLYTERGEGR*MEGTLV
Trigger: CACCAATGTCCCTTCCATTCATCTCCCTTCCCCACG...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGGGGCCAAGTCTCCTCTaGTTGTTATTGCTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: VTNPLPPVPKIPSWGGREGPSLL*LLLLVK
Trigger: CTTCACCAGCAATAACAATCAGAGGAGACTTGGCCC...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGCACCCCATTGTACTCTaGCCTCTCCCATGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: PLGIEFPASALTSSLYTEHPIVL*PLPCSP
Trigger: AGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTG...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAACACCCCATTGTACTCTaGCCTCTCCCATGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: EGLEEWAVVARVAANQGQHPIVL*PLPCSP
Trigger: AGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTG...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAACTTCCCCTGCCAATCTaGCTGGGGAAGGAGAATAGC +
Preference number: 2 (lower is better)
Translates to: EGLEEWAVVARVAANQGQLPLPI*LGKENS
Trigger: GCTATTCTCCTTCCCCAGGCAGATTGGCAGGGGAAG...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTACTTCGAGAACCTCTTTaGTCTGGGGATGTGCAGCAC +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLLREPL*SGDVQH
Trigger: GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAG...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGAGAAGGGAAAGGGGCTaGGGTACTCCCTGGCAACGC +
Preference number: 2 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWERRERG*GTPWQR
Trigger: GCGTTGCCAGGGAGTACCCCAGCCCCTTTCCCTTCT...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGCTCCCTCAGGCTGTGTaGCCTAGGAGGGCACAGACA +
Preference number: 2 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWELPQAV*PRRAQT
Trigger: TGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAAAGGAGAATAGCACATaGAGGAGAGAGACTGGGAGC +
Preference number: 2 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERKENST*RRETGS
Trigger: GCTCCCAGTCTCTCTCCTTCATGTGCTATTCTCCTT...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAAGCTATAAGCAGAGCTaGGCAGTGACCCTGGATTTG +
Preference number: 2 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERSYKQS*AVTLDL
Trigger: CAAATCCAGGGTCACTGCTCAGCTCTGCTTATAGCT...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAGATGTGCAGCACACGTaGGGAAGGGAGATGAATGGA +
Preference number: 2 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPDVQHT*GREMNG
Trigger: TCCATTCATCTCCCTTCCCCACGTGTGCTGCACATC...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAATGAAGGAGAGAGACTaGGAGCCTAGGGTCTGTCGA +
Preference number: 2 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPMKERD*EPRVCR
Trigger: TCGACAGACCCTAGGCTCCCAGTCTCTCTCCTTCAT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CAA 90 bp GAGACTACAAATAGGGCACTCCTATTTTTGTGGGGGATGCACAGCTaGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCAGGGCTTG +
Preference number: 2 (lower is better)
Translates to: ETTNRALLFLWGMHS*LNSHQSWEEAGQGL
Trigger: CAAGCCCTGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAGTGCCCTATTTGTAGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAAGCTATAAGCAGAGCTaGGCAGTGACCCTGGATTTG +
Preference number: 2 (lower is better)
Translates to: EGLEEWAVVARVAANQGQSYKQS*AVTLDL
Trigger: CAAATCCAGGGTCACTGCTCAGCTCTGCTTATAGCT...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTCCCTGCCAATCTGCCTaGGGAAGGAGAATAGCACAT +
Preference number: 2 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAPCQSA*GRRIAH
Trigger: ATGTGCTATTCTCCTTCCCCAGGCAGATTGGCAGGG...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTAGAAGAAAAGGCAGCCTaGGAAGATGTGAGTGCGAAA +
Preference number: 2 (lower is better)
Translates to: TTQKELCREVETTNRALLEEKAA*EDVSAK
Trigger: TTTCGCACTCACATCTTCCCAGGCTGCCTTTTCTTC...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CAA 90 bp GAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTATTTTaGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAG +
Preference number: 2 (lower is better)
Translates to: ELCREVETTNRALLF*WGMHSLLNSHQSWE
Trigger: CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGATGGGGAGATAGAATCTaGGAGATCCTAGAGAAGGAA +
Preference number: 2 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERWGDRI*EILEKE
Trigger: TTCCTTCTCTAGGATCTCTCAGATTCTATCTCCCCA...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGGCCAAGTCTCCTCTaGTTGTTATTGCTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAGPSLL*LLLLVK
Trigger: CTTCACCAGCAATAACAATCAGAGGAGACTTGGCCC...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGGGCCAAGTCTCCTCTaGTTGTTATTGCTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEGPSLL*LLLLVK
Trigger: CTTCACCAGCAATAACAATCAGAGGAGACTTGGCCC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAAATGAAGGAGAGAGACTaGGAGCCTAGGGTCTGTCGA +
Preference number: 2 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKMKERD*EPRVCR
Trigger: TCGACAGACCCTAGGCTCCCAGTCTCTCTCCTTCAT...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCGAAGAAAAGGCAGCCTaGGAAGATGTGAGTGCGAAA +
Preference number: 2 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGEEKAA*EDVSAK
Trigger: TTTCGCACTCACATCTTCCCAGGCTGCCTTTTCTTC...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAAAAGGAGAATAGCACATaGAGGAGAGAGACTGGGAGC +
Preference number: 2 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKKENST*RRETGS
Trigger: GCTCCCAGTCTCTCTCCTTCATGTGCTATTCTCCTT...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR GCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAAGGGAGCCTTGCTCCATaGGCCTGGGACCTCACCCCA +
Preference number: 2 (lower is better)
Translates to: SPLIVIAGEVEIYFLKREGSLAP*AWDLTP
Trigger: TGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCC...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAAAAGGAGAATAGCACATaGAGGAGAGAGACTGGGAGC +
Preference number: 2 (lower is better)
Translates to: SPLIVIAGEVEIYFLKREKENST*RRETGS
Trigger: GCTCCCAGTCTCTCTCCTTCATGTGCTATTCTCCTT...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAATGCTGGGAGGAAAGGTaGAACTTGGAAGAAAAGGCA +
Preference number: 2 (lower is better)
Translates to: SPLIVIAGEVEIYFLKRECWEER*NLEEKA
Trigger: TGCCTTTTCTTCCAAGTTTCACCTTTCCTCCCAGCA...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR TCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAATGGGGAGATAGAATCTaGGAGATCCTAGAGAAGGAA +
Preference number: 2 (lower is better)
Translates to: SPLIVIAGEVEIYFLKREWGDRI*EILEKE
Trigger: TTCCTTCTCTAGGATCTCTCAGATTCTATCTCCCCA...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp GGTGGCGGCGGTAGCAGCCCAAGAAGGGAAAGGGGCTaGGGTACTCCCTGGCAACGCAGGCCTGCTGCCTCT +
Preference number: 3 (lower is better)
Translates to: GGGGSSPRRERG*GTPWQRRPAAS
Trigger: AGAGGCAGCAGGCCTGCGTTGCCAGGGAGTACCCCAGCCCCTTTCCCTTCTTGGGCTGCTACCGCCGCCACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp GTCCAGGCTCTGAGGCTGGAGCCCAAGATACCTTGGTaGGGGAGGGGTCGGGCAGGTAGCCCTCTCAACCAC +
Preference number: 3 (lower is better)
Translates to: VQALRLEPKIPW*GRGRAGSPLNH
Trigger: GTGGTTGAGAGGGCTACCTGCCCGACCCCTCCCCCACCAAGGTATCTTGGGCTCCAGCCTCAGAGCCTGGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp CTAGTCCAGGCTCTGAGGCTGGAGCCCAAGATACCTTaGTGGGGGAGGGGTCGGGCAGGTAGCCCTCTCAAC +
Preference number: 3 (lower is better)
Translates to: LVQALRLEPKIP*WGRGRAGSPLN
Trigger: GTTGAGAGGGCTACCTGCCCGACCCCTCCCCCACCAAGGTATCTTGGGCTCCAGCCTCAGAGCCTGGACTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 72 bp CTGGGACCTCACCCCATTGTACTCTGCCCTCTCCCATaGTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCC +
Preference number: 3 (lower is better)
Translates to: LGPHPIVLCPLP*SPWQEGLEWSP
Trigger: GGGTGACCACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 72 bp TGCTCCATGCGCCTGGGACCTCACCCCATTGTACTCTaGCCTCTCCCATGCTCTCCTTGGCAGGAGGGTCTG +
Preference number: 3 (lower is better)
Translates to: CSMRLGPHPIVL*PLPCSPWQEGL
Trigger: CAGACCCTCCTGCCAAGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCAGGCGCATGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp AGCAGCCCAAGAAGGGAAAGGGGCTGGGGTACTCCCTaGCAACGCAGGCCTGCTGCCTCTATCTCCAACACG +
Preference number: 3 (lower is better)
Translates to: SSPRRERGWGTP*QRRPAASISNT
Trigger: CGTGTTGGAGATAGAGGCAGCAGGCCTGCGTTGCCAGGGAGTACCCCAGCCCCTTTCCCTTCTTGGGCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 72 bp AACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATaGGCCTGGGACCTCACCCCATTGTACTCTGCCCTC +
Preference number: 3 (lower is better)
Translates to: NTRLPQKGSLAP*AWDLTPLYSAL
Trigger: GAGGGCAGAGTACAATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 72 bp GCTCAGACTTGGGCCAGTGGAGCTGGGGGTGAGCAGTaGACCAAAAGCCAAGCAGAGCTTTCTGCTGGGAGG +
Preference number: 3 (lower is better)
Translates to: AQTWASGAGGEQ*TKSQAELSAGR
Trigger: CCTCCCAGCAGAAAGCTCTGCTTGGCTTTTGGTGCACTGCTCACCCCCAGCTCCACTGGCCCAAGTCTGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp ACACGGGCAGACCCATGCAAGCTCCCTCAGGCTGTGTaGCCTAGGAGGGCACAGACAGTAGCACTGGACAGA +
Preference number: 3 (lower is better)
Translates to: TRADPCKLPQAV*PRRAQTVALDR
Trigger: TCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAGCTTGCATGGGTCTGCCCGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCACCCAGAAAGGGAGCCTaGCTCCATGCGCCTGGGACC +
Preference number: 3 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSPRKGA*LHAPGT
Trigger: GGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGG...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAGCCCCAGGCTCAGACTaGGGCCAGTGGAGCTGGGGG +
Preference number: 3 (lower is better)
Translates to: EGLEEWAVVARVAANQGQAPGSD*GQWSWG
Trigger: CCCCCAGCTCCACTGGCCCAAGTCTGAGCCTGGGGC...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp CACCCCATTGTACTCTGCCCTCTCCCATGCTCTCCTTaGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCA +
Preference number: 3 (lower is better)
Translates to: HPIVLCPLPCSP*QEGLEWSPTKA
Trigger: TGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAGAGGGCAGAGTACAATGGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CCA 72 bp CAACCAAGCAGCAGGGGATGTAGCCTTGTAGGATCCTaGCCAGAGGGTGAGGGTGGGGCTGAGAAGCCTCTA +
Preference number: 3 (lower is better)
Translates to: QPSSRGCSLVGS*PEGEGGAEKPL
Trigger: TAGAGGCTTCTCAGCCCCACCCTCACCCTCTGGCCAGGATCCTACAAGGCTACATCCCCTGCTGCTTGGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp TGCCAGAGTAGCCGCCAATCAAGGTCAAAACCCTGCTaGGGACCACCCAGAAGGAGCTGTGCAGAGAGGTGG +
Preference number: 3 (lower is better)
Translates to: CQSSRQSRSKPC*GPPRRSCAERW
Trigger: CCACCTCTCTGCACAGCTCCTTCTGGGTGGTCCTCAGCAGGGTTTTGACCTTGATTGGCGGCTACTCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGGCTTCGAGAACCTCTTaGGTCTGGGGATGTGCAGCA +
Preference number: 3 (lower is better)
Translates to: TQRDTCSELVQALRLEPKASRTS*VWGCAA
Trigger: TGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGC...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGATCTCCCATGCTCTCCTaGGCAGGAGGGTCTGGAGTG +
Preference number: 3 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERSPMLS*AGGSGV
Trigger: CACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAGA...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCAGCTTCGAGAACCTCTTaGGTCTGGGGATGTGCAGCA +
Preference number: 3 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSASRTS*VWGCAA
Trigger: TGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGC...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp GGTGAAACTTGGAAGAAAAGGCAGCCTGGGAAGATGTaGGTGCGAAAGGAGGCCAAGGGGAGAGATCGAGGG +
Preference number: 3 (lower is better)
Translates to: GETWKKRQPGKM*VRKEAKGRDRG
Trigger: CCCTCGATCTCTCCCCTTGGCCTCCTTTCGCACTCACATCTTCCCAGGCTGCCTTTTCTTCCAAGTTTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR GCA 72 bp CTGCTCTCACTTCCTCACTATACACAGAGGGACACATaGTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCC +
Preference number: 3 (lower is better)
Translates to: LLSLPHYTQRDT*SELVQALRLEP
Trigger: GGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGTATAGTGAGGAAGTGAGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAATGGGACCTCACCCCATaGTACTCTGCCCTCTCCCAT +
Preference number: 3 (lower is better)
Translates to: EGLEEWAVVARVAANQGQWDLTP*YSALSH
Trigger: ATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCA...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTTGGGACCTCACCCCATaGTACTCTGCCCTCTCCCAT +
Preference number: 3 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAWDLTP*YSALSH
Trigger: ATGGGAGAGGGCAGAGTACAATGGGGTGAGGTCCCA...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp TTCCCGAGGGTAGGAAGGCAGATCTCCCCTTGGGATTaGGTTTCCAGCCTCTGCTCTCACTTCCTCACTATA +
Preference number: 3 (lower is better)
Translates to: FPRVGRQISPWD*VSSLCSHFLTI
Trigger: TATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGGAGATCTGCCTTCCTACCCTCGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp CTCTCTAACATACACACACACATTAGCCTTGTTCCTTaGGGGCAGTCCCATCCAACTCGGACTGGCCCCTCA +
Preference number: 3 (lower is better)
Translates to: LSNIHTHISLVP*GQSHPTRTGPS
Trigger: TGAGGGGCCAGTCCGAGTTGGATGGGACTGCCCTCAAGGAACAAGGCTAATGTGTGTGTGTATGTTAGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAATCTCCCATGCTCTCCTaGGCAGGAGGGTCTGGAGTG +
Preference number: 3 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKSPMLS*AGGSGV
Trigger: CACTCCAGACCCTCCTGCCAAGGAGAGCATGGGAGA...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTAAGGCAGATCTCCCCTaGGGATTGAGTTTCCAGCCT +
Preference number: 3 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAKADLP*GLSFQP
Trigger: AGGCTGGAAACTCAATCCCAAGGGGAGATCTGCCTT...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp ACTGTGGACCAGGCTCAGGGTCTGAATCACGTATTGTaGGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGT +
Preference number: 3 (lower is better)
Translates to: TVDQAQGLNHVL*GIRRMGSGCQS
Trigger: ACTCTGGCAACCACTGCCCATTCTTCTAATCCCTCACAATACGTGATTCAGACCCTGAGCCTGGTCCACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp GCCTTTTCCCAGTCACTGTGGACCAGGCTCAGGGTCTaGATCACGTATTGTGAGGGATTAGAAGAATGGGCA +
Preference number: 3 (lower is better)
Translates to: AFSQSLWTRLRV*ITYCEGLEEWA
Trigger: TGCCCATTCTTCTAATCCCTCACAATACGTGATTCAGACCCTGAGCCTGGTCCACAGTGACTGGGAAAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAAGCTTCGAGAACCTCTTaGGTCTGGGGATGTGCAGCA +
Preference number: 3 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKASRTS*VWGCAA
Trigger: TGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGC...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAAGCCCCAGGCTCAGACTaGGGCCAGTGGAGCTGGGGG +
Preference number: 3 (lower is better)
Translates to: SPLIVIAGEVEIYFLKREAPGSD*GQWSWG
Trigger: CCCCCAGCTCCACTGGCCCAAGTCTGAGCCTGGGGC...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp GGGAAAACACAGGAAGACATCAGACATCCATCCATCTaGCCTCAGAAACGGGCAAACAGAAGACCTAAGAGG +
Preference number: 3 (lower is better)
Translates to: GKTQEDIRHPSI*PQKRANRRPKR
Trigger: CCTCTTAGGTCTTCTGTTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR TCA 72 bp TTAGAATTTCCCTGCCTGTCTTGGGGAGATAGAATCTaGGAGATCCTAGAGAAGGAAGTGACATTGACTGTC +
Preference number: 3 (lower is better)
Translates to: LEFPCLSWGDRI*EILEKEVTLTV
Trigger: GACAGTCAATGTCACTTCCTTCTCTAGGATCTCTCAGATTCTATCTCCCCAAGACAGGCAGGGAAATTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR-3UTR CAA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAAACACACACATTAGCCTaGTTCCTTGAGGGCAGTCCC +
Preference number: 3 (lower is better)
Translates to: SPLIVIAGEVEIYFLKRETHTLA*FLEGSP
Trigger: GGGACTGCCCTCAAGGAACAAGGCTAATGTGTGTGT...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATGCTGCAGCTTCCCACTaGAGCCCTGCCGGAGCTCGG +
Preference number: 4 (lower is better)
Translates to: RGFPRKGALLHAPGTSPHAAASH*SPAGAR
Trigger: CCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGC...ATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATGTGGAGCCTTGTCGCTaGCCCCACTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RGFPRKGALLHAPGTSPHVEPCR*PHCCCC
Trigger: GCAGCAGCAGCAGTGGGGGCAGCGACAAGGCTCCAC...ATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCGCCGCCACGCCAGCCTaGCGGCGCATCTTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPAATPA*RRILAS
Trigger: CGAGGCCAAGATGCGCCGGCAGGCTGGCGTGGCGGC...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACGCCGCCACGCCAGCCTaGCGGCGCATCTTGGCCTCG +
Preference number: 4 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHAATPA*RRILAS
Trigger: CGAGGCCAAGATGCGCCGGCAGGCTGGCGTGGCGGC...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGAGCTGTAGGCCCTGCTaGGCACGCTGGGCACGGCGG +
Preference number: 4 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWSCRPC*ARWARR
Trigger: CCGCCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCT...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTAGCTGTAGGCCCTGCTaGGCACGCTGGGCACGGCGG +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGASCRPC*ARWARR
Trigger: CCGCCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCT...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTGCACGGCGGGCCACCTaGTGCAGCTTCCCACTGCAG +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGAARRAT*CSFPLQ
Trigger: CTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGC...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATTTTCAGTGGACTCGATaGGCTCCAGGCGGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: RGFPRKGALLHAPGTSPHFQWTR*APGGRG
Trigger: CCCCCTCCCGCCTGGAGCGCATCGAGTCCACTGAAA...ATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCGCAAAGCTGGCACCCTaGCGCTCACGGGCACGCCGC +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPAKLAP*RSRARR
Trigger: GCGGCGTGCCCGTGAGCGCCAGGGTGCCAGCTTTGC...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTACCCTCCCGAAGCTGTaGGCGCAGCCCCACGATCTC +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGATLPKL*AQPHDL
Trigger: GAGATCGTGGGGCTGCGCTCACAGCTTCGGGAGGGT...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACACGGCTGCCTCGCTCTaGTCCAGGCTGCGCCGCAGA +
Preference number: 4 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHTAASL*SRLRRR
Trigger: TCTGCGGCGCAGCCTGGAGCAGAGCGAGGCAGCCGT...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACGCTGCAGCTTCCCACTaGAGCCCTGCCGGAGCTCGG +
Preference number: 4 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHAAASH*SPAGAR
Trigger: CCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGC...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGGCGGGTCCTCAAGCTTaGGACCCTCCGAGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWAGPQA*DPPRPG
Trigger: ACCTGGCCTCGGAGGGTCCCAAGCTTGAGGACCCGC...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGTGTCCAGTCCGCCTTTaGGGCCCGCGGGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRECPVRL*GPRGPV
Trigger: GACAGGGCCCCGCGGGCCTCAAAGGCGGACTGGACA...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp CGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATAGGAGTCCCTCAAGCTaGGCAGCTGCTCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: RGFPRKGALLHAPGTSPHRSPSS*AAAPPS
Trigger: AGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCT...ATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGTGCAGCTGTAGGCCCTaGTGGGCACGCTGGGCACGG +
Preference number: 4 (lower is better)
Translates to: TQRDTCSELVQALRLEPKCSCRP*WARWAR
Trigger: CCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCTGCA...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCATCTCCCCACCTCCCTaGGTAGGGCCCGTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPISPPP*VGPVSH
Trigger: GTGGGACACGGGCCCTACGCAGGGAGGTGGGGAGAT...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTGCAGCCAGCTCAGCCTaGAATCTCCCCACCTCCCTG +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGAAASSA*NLPTSL
Trigger: CAGGGAGGTGGGGAGATTGCAGGCTGAGCTGGCTGC...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCCGCTCCTCCAGCTCCTaGATCAGCGCACTGGGCGAG +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPRSSSS*ISALGE
Trigger: CTCGCCCAGTGCGCTGATCCAGGAGCTGGAGGAGCG...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGGCAAAGCTGGCACCCTaGCGCTCACGGGCACGCCGC +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGREAKLAP*RSRARR
Trigger: GCGGCGTGCCCGTGAGCGCCAGGGTGCCAGCTTTGC...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTATGTCCAGTCCGCCTTTaGGGCCCGCGGGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: TTQKELCREVETTNRALLCPVRL*GPRGPV
Trigger: GACAGGGCCCCGCGGGCCTCAAAGGCGGACTGGACA...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCACGCTCTGCTCCAGGCTaGGCCGCAGAGCTGCCACCT +
Preference number: 4 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSRSAPG*AAELPP
Trigger: AGGTGGCAGCTCTGCGGCGCAGCCTGGAGCAGAGCG...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGGGCTGGCCTGTTTGCTaGCGAAGGAGTCCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWGWPVC*RRSPSS
Trigger: GCTTGAGGGACTCCTTCGGCAGCAAACAGGCCAGCC...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTAGTCAGGCGGGGATCTaGGGGTCCAAGCTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGASQAGI*GSKLRR
Trigger: CCTTCTGAGCTTGGACCCCCAGATCCCCGCCTGACT...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGAGTCAGGCGGGGATCTaGGGGTCCAAGCTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWSQAGI*GSKLRR
Trigger: CCTTCTGAGCTTGGACCCCCAGATCCCCGCCTGACT...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTCCAGGGAAACTGCCTTaGTTGCCCCCACCCCCTGTT +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGAPGKLP*LPPPPV
Trigger: AACAGGGGGTGGGGGCAACCAAGGCAGTTTCCCTGG...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAAGCTGTAGGCCCTGCTaGGCACGCTGGGCACGGCGG +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERSCRPC*ARWARR
Trigger: CCGCCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCT...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACCCTGCCGGCGCATCTTaGCCTCGTCACTCTCACAGG +
Preference number: 4 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHPAGAS*PRHSHR
Trigger: CCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGG...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCCCTGCCGGCGCATCTTaGCCTCGTCACTCTCACAGG +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPPAGAS*PRHSHR
Trigger: CCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGG...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCAGCTCCTCCGCAAAGCTaGCACCCTGGCGCTCACGGG +
Preference number: 4 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSAPPQS*HPGAHG
Trigger: CCCGTGAGCGCCAGGGTGCCAGCTTTGCGGAGGAGC...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGAGGAGTCCCTCAAGCTaGGCAGCTGCTCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWRSPSS*AAAPPS
Trigger: AGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCT...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCTTGGACCAGGGAAACTaGCTTGGTTGCCCCCACCCC +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPLDQGN*LGCPHP
Trigger: GGGGTGGGGGCAACCAAGGCAGTTTCCCTGGTCCAA...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCATGCCCCCACTGCTGCTaGTGCCCCCACTGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSCPHCC*CPHCCP
Trigger: TGGGCAGCAGTGGGGGCAGCAGCAGCAGTGGGGGCA...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTATGCCCCCACTGCTGCTaGTGCCCCCACTGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: TTQKELCREVETTNRALLCPHCC*CPHCCP
Trigger: TGGGCAGCAGTGGGGGCAGCAGCAGCAGTGGGGGCA...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGACGCTCTGCTCCAGGCTaGGCCGCAGAGCTGCCACCT +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERRSAPG*AAELPP
Trigger: AGGTGGCAGCTCTGCGGCGCAGCCTGGAGCAGAGCG...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ACCACCCAGAAGGAGCTGTGCAGAGAGGTGGAGACTACAAATAGGGCACTCCTAGCACGGCGGGCCACCTaGTGCAGCTTCCCACTGCAG +
Preference number: 4 (lower is better)
Translates to: TTQKELCREVETTNRALLARRAT*CSFPLQ
Trigger: CTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGC...TAGGAGTGCCCTATTTGTAGTCTCCACCTCTCTGCACAGCTCCTTCTGGGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGATGCAGCTGTAGGCCCTaGTGGGCACGCTGGGCACGG +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERCSCRP*WARWAR
Trigger: CCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCTGCA...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACTGTAACCGCAGCACCTaGAGCTGTAGGCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHCNRST*SCRPCW
Trigger: CCAGCAGGGCCTACAGCTGCAGGTGCTGCGGTTACA...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACCTCACCCCATAGCTGTTTCTTGTCCTaGTGTAACCGCAGCACCTGC +
Preference number: 4 (lower is better)
Translates to: RGFPRKGALLHAPGTSPHSCFLS*CNRSTC
Trigger: GCAGGTGCTGCGGTTACAGCAGGACAAGAAACAGCT...ATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGATCCAGCTCTTCCCGTTaGCTTATCAGCTGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: YLQHEASPEREPCSMRLGSSSSR*LISWAA
Trigger: GGCGGCCCAGCTGATAAGGCAACGGGAAGAGCTGGA...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGACTCAAGCTGAGCAGCTaGTCCTCCTTCTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: YLQHEASPEREPCSMRLGLKLSS*SSFSRS
Trigger: GCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAG...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCCCAGGCTGGCCTGTTTaGTGCCGAAGGAGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPPGWPV*CRRSPS
Trigger: TGAGGGACTCCTTCGGCAGCAAACAGGCCAGCCTGG...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTCACCAGCTGGGGTCATaGTCCGAGACTTGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGAHQLGS*SETCPV
Trigger: GACTGGACAAGTCTCGGACCATGACCCCAGCTGGTG...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCCCCACTCCCACCAGCTaGGGTCATGGTCCGAGACTT +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPPTPTS*GHGPRL
Trigger: AAGTCTCGGACCATGACCCCAGCTGGTGGGAGTGGG...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCAGGAGCTTGGGTGGGTaGTTGGGTTCGCGATACTGG +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPRSLGG*LGSRYW
Trigger: CCAGTATCGCGAACCCAATCACCCACCCAAGCTCCT...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR TCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGTCGGCCTGCTCCTTCTaGCAGACGGCCACCTTGTCC +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRESACSF*QTATLS
Trigger: GGACAAGGTGGCCGTCTGTCAGAAGGAGCAGGCCGA...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCAACCCTCCCGAAGCTGTaGGCGCAGCCCCACGATCTC +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSTLPKL*AQPHDL
Trigger: GAGATCGTGGGGCTGCGCTCACAGCTTCGGGAGGGT...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGAAGGAGTCCCTCAAGCTaGGCAGCTGCTCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: YLQHEASPEREPCSMRLGRSPSS*AAAPPS
Trigger: AGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCT...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGACGGCTGCCTCGCTCTaGTCCAGGCTGCGCCGCAGA +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTETAASL*SRLRRR
Trigger: TCTGCGGCGCAGCCTGGAGCAGAGCGAGGCAGCCGT...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGCTCAAGCTGAGCAGCTaGTCCTCCTTCTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: TQRDTCSELVQALRLEPKLKLSS*SSFSRS
Trigger: GCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAG...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCACGCTCCTCCAGCTCCTaGATCAGCGCACTGGGCGAG +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSRSSSS*ISALGE
Trigger: CTCGCCCAGTGCGCTGATCCAGGAGCTGGAGGAGCG...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGCAAAGCTGGCACCCTaGCGCTCACGGGCACGCCGC +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAAKLAP*RSRARR
Trigger: GCGGCGTGCCCGTGAGCGCCAGGGTGCCAGCTTTGC...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAGCTCCTCCGCAAAGCTaGCACCCTGGCGCTCACGGG +
Preference number: 4 (lower is better)
Translates to: EGLEEWAVVARVAANQGQAPPQS*HPGAHG
Trigger: CCCGTGAGCGCCAGGGTGCCAGCTTTGCGGAGGAGC...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGAGGTGGGCAAGCTTGTaGGTGAGTTCCGGCCTGAGT +
Preference number: 4 (lower is better)
Translates to: TQRDTCSELVQALRLEPKRWASL*VSSGLS
Trigger: ACTCAGGCCGGAACTCACTCACAAGCTTGCCCACCT...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAACCCTCCCGAAGCTGTaGGCGCAGCCCCACGATCTC +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPTLPKL*AQPHDL
Trigger: GAGATCGTGGGGCTGCGCTCACAGCTTCGGGAGGGT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGGGAAACTGCCTTGGTTaGCCCCACCCCCTGTTCGAG +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGREGNCLG*PHPLFE
Trigger: CTCGAACAGGGGGTGGGGGCAACCAAGGCAGTTTCC...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCATTGGACCAGGGAAACTaGCTTGGTTGCCCCCACCCC +
Preference number: 4 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSLDQGN*LGCPHP
Trigger: GGGGTGGGGGCAACCAAGGCAGTTTCCCTGGTCCAA...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTACGGCTGCCTCGCTCTaGTCCAGGCTGCGCCGCAGA +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEATAASL*SRLRRR
Trigger: TCTGCGGCGCAGCCTGGAGCAGAGCGAGGCAGCCGT...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGCAGCTGTAGGCCCTaGTGGGCACGCTGGGCACGG +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGCSCRP*WARWAR
Trigger: CCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCTGCA...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGTGTAACCGCAGCACCTaGAGCTGTAGGCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRECNRST*SCRPCW
Trigger: CCAGCAGGGCCTACAGCTGCAGGTGCTGCGGTTACA...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTAGCTGTTTCTTGTCCTaGTGTAACCGCAGCACCTGC +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGASCFLS*CNRSTC
Trigger: GCAGGTGCTGCGGTTACAGCAGGACAAGAAACAGCT...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGCCAGGCTGGCCTGTTTaGTGCCGAAGGAGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGREPGWPV*CRRSPS
Trigger: TGAGGGACTCCTTCGGCAGCAAACAGGCCAGCCTGG...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAATCTCCCCACCTCCCTaGGTAGGGCCCGTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPISPPP*VGPVSH
Trigger: GTGGGACACGGGCCCTACGCAGGGAGGTGGGGAGAT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCTCCTTGGCAGGAGGGTCTGGAGTGGTCACCCACAAAGGCAGTGCTGGAGCTTTCTTTTCCTCTCCATaGTGGGGAGTAGGCGTGCTG +
Preference number: 4 (lower is better)
Translates to: LSLAGGSGVVTHKGSAGAFFSSP*WGVGVL
Trigger: CAGCACGCCTACTCCCCAGCATGGAGAGGAAAAGAA...AGCTCCAGCACTGCCTTTGTGGGTGACCACTCCAGACCCTCCTGCCAAGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAGCGGGTCCTCAAGCTTaGGACCCTCCGAGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPAGPQA*DPPRPG
Trigger: ACCTGGCCTCGGAGGGTCCCAAGCTTGAGGACCCGC...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGAGCTACCACCGCTTCTTaGACCAGGGAAACTGCCTTG +
Preference number: 4 (lower is better)
Translates to: YLQHEASPEREPCSMRLGATTAS*TRETAL
Trigger: CAAGGCAGTTTCCCTGGTCCAAGAAGCGGTGGTAGC...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
3UTR CAA 72 bp CTATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTaGCTCCATGCGCCTGGGACCTCACCCCATTGTACT +
Preference number: 4 (lower is better)
Translates to: LSPTRGFPRKGA*LHAPGTSPHCT
Trigger: AGTACAATGGGGTGAGGTCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp TCAGGGCTTGGGGGACTTGCTCACAGTAGTTACCAACCCTCTCCCTCCTGTCCCTCTCCAGCTTCGCCATaGTTAAGCCAGAAGGGCACT +
Preference number: 4 (lower is better)
Translates to: SGLGGLAHSSYQPSPSCPSPASP*LSQKGT
Trigger: AGTGCCCTTCTGGCTTAATCATGGCGAAGCTGGAGA...GGGACAGGAGGGAGAGGGTTGGTAACTACTGTGAGCAAGTCCCCCAAGCCCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGACCCGCAGCTCGCCATTaGGGTAGAGAGAGTTGGCGA +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERPAARH*GRESWR
Trigger: TCGCCAACTCTCTCTACCTCAATGGCGAGCTGCGGG...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR TCA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGTGCGACACATCGGCCTaGGAGTCCTTCAGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: TQRDTCSELVQALRLEPKCDTSA*ESFSCC
Trigger: GCAACAACTGAAGGACTCTCAGGCCGATGTGTCGCA...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCATGCTGCCCCCACTGCTaGCCACCACATTACCACAGA +
Preference number: 4 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSCCPHC*PPHYHR
Trigger: TCTGTGGTAATGTGGTGGGCAGCAGTGGGGGCAGCA...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGCTGCAGCTTCCCACTaGAGCCCTGCCGGAGCTCGG +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEAAASH*SPAGAR
Trigger: CCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGCACGGCGGGCCACCTaGTGCAGCTTCCCACTGCAG +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEARRAT*CSFPLQ
Trigger: CTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTATCTCCCCACCTCCCTaGGTAGGGCCCGTGTCCCAC +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAISPPP*VGPVSH
Trigger: GTGGGACACGGGCCCTACGCAGGGAGGTGGGGAGAT...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGCAGCCAGCTCAGCCTaGAATCTCCCCACCTCCCTG +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTEAASSA*NLPTSL
Trigger: CAGGGAGGTGGGGAGATTGCAGGCTGAGCTGGCTGC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAGCAGCCAGCTCAGCCTaGAATCTCCCCACCTCCCTG +
Preference number: 4 (lower is better)
Translates to: EGLEEWAVVARVAANQGQAASSA*NLPTSL
Trigger: CAGGGAGGTGGGGAGATTGCAGGCTGAGCTGGCTGC...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGATTCTTTTCCTCTCCATaGTGGGGAGTAGGCGTGCTG +
Preference number: 4 (lower is better)
Translates to: YLQHEASPEREPCSMRLGFFSSP*WGVGVL
Trigger: CAGCACGCCTACTCCCCAGCATGGAGAGGAAAAGAA...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGTTTCAGTGGACTCGATaGGCTCCAGGCGGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTEFQWTR*APGGRG
Trigger: CCCCCTCCCGCCTGGAGCGCATCGAGTCCACTGAAA...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGGGTCCCATTGGTCTGTaGAGGACACAAGTTCTGCAT +
Preference number: 4 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWGPIGL*RTQVLH
Trigger: ATGCAGAACTTGTGTCCTCCACAGACCAATGGGACC...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCAACGACCCACTCTTACTaGAAGCCCGCCCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSTTHSY*KPAHCQ
Trigger: CTGACAGTGGGCGGGCTTCCAGTAAGAGTGGGTCGT...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCAGGCCTGACCGCCCCATaGATGATGACGACCCACTCT +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSGLTAP*MMTTHS
Trigger: AGAGTGGGTCGTCATCATCCATGGGGCGGTCAGGCC...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTCGCTCCTCCAGCTCCTaGATCAGCGCACTGGGCGAG +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEARSSSS*ISALGE
Trigger: CTCGCCCAGTGCGCTGATCCAGGAGCTGGAGGAGCG...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGACACTCAGCTCCAGGCTaGCCTGTTTGCTGCCGAAGG +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERHSAPG*PVCCRR
Trigger: CCTTCGGCAGCAAACAGGCCAGCCTGGAGCTGAGTG...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCACACTCAGCTCCAGGCTaGCCTGTTTGCTGCCGAAGG +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSHSAPG*PVCCRR
Trigger: CCTTCGGCAGCAAACAGGCCAGCCTGGAGCTGAGTG...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACCTGCCGGCGCATCTTaGCCTCGTCACTCTCACAGG +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPPAGAS*PRHSHR
Trigger: CCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACCCGCAGCTCGCCATTaGGGTAGAGAGAGTTGGCGA +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPPAARH*GRESWR
Trigger: TCGCCAACTCTCTCTACCTCAATGGCGAGCTGCGGG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR TCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTCGGCCTGCTCCTTCTaGCAGACGGCCACCTTGTCC +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGSACSF*QTATLS
Trigger: GGACAAGGTGGCCGTCTGTCAGAAGGAGCAGGCCGA...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGTGCGACACATCGGCCTaGGAGTCCTTCAGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRECDTSA*ESFSCC
Trigger: GCAACAACTGAAGGACTCTCAGGCCGATGTGTCGCA...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGGCTGGCCTGTTTGCTaGCGAAGGAGTCCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTEGWPVC*RRSPSS
Trigger: GCTTGAGGGACTCCTTCGGCAGCAAACAGGCCAGCC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTTTCAGTGGACTCGATaGGCTCCAGGCGGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGFQWTR*APGGRG
Trigger: CCCCCTCCCGCCTGGAGCGCATCGAGTCCACTGAAA...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGCGGGTCCTCAAGCTTaGGACCCTCCGAGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEAGPQA*DPPRPG
Trigger: ACCTGGCCTCGGAGGGTCCCAAGCTTGAGGACCCGC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACCACAGACATCTGTGTaGTCACTGCCCCGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPPQTSV*SLPRSS
Trigger: CGAGCTGCGGGGCAGTGACCACACAGATGTCTGTGG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGAGGTCCCATTGGTCTGTaGAGGACACAAGTTCTGCAT +
Preference number: 4 (lower is better)
Translates to: YLQHEASPEREPCSMRLGGPIGL*RTQVLH
Trigger: ATGCAGAACTTGTGTCCTCCACAGACCAATGGGACC...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGACACCAGCTGGGGTCATaGTCCGAGACTTGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERHQLGS*SETCPV
Trigger: GACTGGACAAGTCTCGGACCATGACCCCAGCTGGTG...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACCCACTCCCACCAGCTaGGGTCATGGTCCGAGACTT +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPPTPTS*GHGPRL
Trigger: AAGTCTCGGACCATGACCCCAGCTGGTGGGAGTGGG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAACGACCCACTCTTACTaGAAGCCCGCCCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERTTHSY*KPAHCQ
Trigger: CTGACAGTGGGCGGGCTTCCAGTAAGAGTGGGTCGT...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGGCCTGACCGCCCCATaGATGATGACGACCCACTCT +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTEGLTAP*MMTTHS
Trigger: AGAGTGGGTCGTCATCATCCATGGGGCGGTCAGGCC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAAGCTCCTCCGCAAAGCTaGCACCCTGGCGCTCACGGG +
Preference number: 4 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKAPPQS*HPGAHG
Trigger: CCCGTGAGCGCCAGGGTGCCAGCTTTGCGGAGGAGC...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGTCTCCAGCTTCGCCATaGTTAAGCCAGAAGGGCACT +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRESPASP*LSQKGT
Trigger: AGTGCCCTTCTGGCTTAATCATGGCGAAGCTGGAGA...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAAGGAGCTTGGGTGGGTaGTTGGGTTCGCGATACTGG +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPRSLGG*LGSRYW
Trigger: CCAGTATCGCGAACCCAATCACCCACCCAAGCTCCT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR TCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAAGGTGGGCAAGCTTGTaGGTGAGTTCCGGCCTGAGT +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPRWASL*VSSGLS
Trigger: ACTCAGGCCGGAACTCACTCACAAGCTTGCCCACCT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGTCGGCCTGCTCCTTCTaGCAGACGGCCACCTTGTCC +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWESACSF*QTATLS
Trigger: GGACAAGGTGGCCGTCTGTCAGAAGGAGCAGGCCGA...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCATGCGACACATCGGCCTaGGAGTCCTTCAGTTGTTGC +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSCDTSA*ESFSCC
Trigger: GCAACAACTGAAGGACTCTCAGGCCGATGTGTCGCA...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAAGTGGAGCCTTGTCGCTaGCCCCACTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKVEPCR*PHCCCC
Trigger: GCAGCAGCAGCAGTGGGGGCAGCGACAAGGCTCCAC...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAAGCACTGGTCTAGCTTaGCAGAGGTGGTCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERSTGLA*QRWSGA
Trigger: AGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCT...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGAGCTGTTTCTTGTCCTaGTGTAACCGCAGCACCTGC +
Preference number: 4 (lower is better)
Translates to: VTNPLPPVPKIPSWGGRESCFLS*CNRSTC
Trigger: GCAGGTGCTGCGGTTACAGCAGGACAAGAAACAGCT...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTCCAGCTCTTCCCGTTaGCTTATCAGCTGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGSSSSR*LISWAA
Trigger: GGCGGCCCAGCTGATAAGGCAACGGGAAGAGCTGGA...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCCTCAAGCTGAGCAGCTaGTCCTCCTTCTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGLKLSS*SSFSRS
Trigger: GCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAG...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGCTGGCCTGTTTGCTaGCGAAGGAGTCCCTCAAGC +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAGWPVC*RRSPSS
Trigger: GCTTGAGGGACTCCTTCGGCAGCAAACAGGCCAGCC...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCATTCTTTTCCTCTCCATaGTGGGGAGTAGGCGTGCTG +
Preference number: 4 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSFFSSP*WGVGVL
Trigger: CAGCACGCCTACTCCCCAGCATGGAGAGGAAAAGAA...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTCCAGGGAAACTGCCTTaGTTGCCCCCACCCCCTGTT +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAPGKLP*LPPPPV
Trigger: AACAGGGGGTGGGGGCAACCAAGGCAGTTTCCCTGG...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCCCACAGACATCTGTGTaGTCACTGCCCCGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGPQTSV*SLPRSS
Trigger: CGAGCTGCGGGGCAGTGACCACACAGATGTCTGTGG...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGCTTGGGTGGGTGATTaGGTTCGCGATACTGGGGTG +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTEAWVGD*VRDTGV
Trigger: CACCCCAGTATCGCGAACCCAATCACCCACCCAAGC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACTAGCTTGCCAGAGGTaGTCAGGAGCTTGGGTGGGT +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPLACQR*SGAWVG
Trigger: ACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAAGTGGCTCCGAGCACTaGTCTAGCTTGCCAGAGGTG +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPSGSEH*SSLPEV
Trigger: CACCTCTGGCAAGCTAGACCAGTGCTCGGAGCCACT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAACACCAGCTGGGGTCATaGTCCGAGACTTGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: EGLEEWAVVARVAANQGQHQLGS*SETCPV
Trigger: GACTGGACAAGTCTCGGACCATGACCCCAGCTGGTG...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAACGACCCACTCTTACTaGAAGCCCGCCCACTGTCAG +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPTTHSY*KPAHCQ
Trigger: CTGACAGTGGGCGGGCTTCCAGTAAGAGTGGGTCGT...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CAA 72 bp CTTCCCGAGGGTAGGAAGGCAGATCTCCCCTTGGGATaGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTAT +
Preference number: 4 (lower is better)
Translates to: LPEGRKADLPLG*SFQPLLSLPHY
Trigger: ATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGGAGATCTGCCTTCCTACCCTCGGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCAGGTGGGCAAGCTTGTaGGTGAGTTCCGGCCTGAGT +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGRWASL*VSSGLS
Trigger: ACTCAGGCCGGAACTCACTCACAAGCTTGCCCACCT...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAACGGTGCCAATACGGTTaGTATGGCTGGTGGAAGCAC +
Preference number: 4 (lower is better)
Translates to: EGLEEWAVVARVAANQGQRCQYG*YGWWKH
Trigger: GTGCTTCCACCAGCCATATCAACCGTATTGGCACCG...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGCTGCCCCCACTGCTaGCCACCACATTACCACAGA +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGCCPHC*PPHYHR
Trigger: TCTGTGGTAATGTGGTGGGCAGCAGTGGGGGCAGCA...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGAGCACTGGTCTAGCTTaGCAGAGGTGGTCAGGAGCT +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTESTGLA*QRWSGA
Trigger: AGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCT...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR GCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAGGAAGCACTGAGGGGTaGCAGATGCTGGCTATAGCT +
Preference number: 4 (lower is better)
Translates to: EGLEEWAVVARVAANQGQGSTEG*QMLAIA
Trigger: AGCTATAGCCAGCATCTGGCACCCCTCAGTGCTTCC...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGTGTAACCGCAGCACCTaGAGCTGTAGGCCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWECNRST*SCRPCW
Trigger: CCAGCAGGGCCTACAGCTGCAGGTGCTGCGGTTACA...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCAGCTCCAGCTGCTGGTTaGGCTGATACATCTCCACAT +
Preference number: 4 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSAPAAG*ADTSPH
Trigger: ATGTGGAGATGTATCAGCGCAACCAGCAGCTGGAGC...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGCTACCACCGCTTCTTaGACCAGGGAAACTGCCTTG +
Preference number: 4 (lower is better)
Translates to: PLGIEFPASALTSSLYTEATTAS*TRETAL
Trigger: CAAGGCAGTTTCCCTGGTCCAAGAAGCGGTGGTAGC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGCTTGGGTGGGTGATTaGGTTCGCGATACTGGGGTG +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAAWVGD*VRDTGV
Trigger: CACCCCAGTATCGCGAACCCAATCACCCACCCAAGC...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCCTAGCTTGCCAGAGGTaGTCAGGAGCTTGGGTGGGT +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGLACQR*SGAWVG
Trigger: ACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAG...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCAGTGGCTCCGAGCACTaGTCTAGCTTGCCAGAGGTG +
Preference number: 4 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGSGSEH*SSLPEV
Trigger: CACCTCTGGCAAGCTAGACCAGTGCTCGGAGCCACT...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGCACTCAGCTCCAGGCTaGCCTGTTTGCTGCCGAAGG +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEHSAPG*PVCCRR
Trigger: CCTTCGGCAGCAAACAGGCCAGCCTGGAGCTGAGTG...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAACCAGGCTGGCCTGTTTaGTGCCGAAGGAGTCCCTCA +
Preference number: 4 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKPGWPV*CRRSPS
Trigger: TGAGGGACTCCTTCGGCAGCAAACAGGCCAGCCTGG...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAACCCACTCCCACCAGCTaGGGTCATGGTCCGAGACTT +
Preference number: 4 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKPTPTS*GHGPRL
Trigger: AAGTCTCGGACCATGACCCCAGCTGGTGGGAGTGGG...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAAAACACAGGAAGACATCAGACATCCATCCATCTGACCTCAGAAACGGGCAAAGGCCTGACCGCCCCATaGATGATGACGACCCACTCT +
Preference number: 4 (lower is better)
Translates to: ENTGRHQTSIHLTSETGKGLTAP*MMTTHS
Trigger: AGAGTGGGTCGTCATCATCCATGGGGCGGTCAGGCC...TTTGCCCGTTTCTGAGGTCAGATGGATGGATGTCTGATGTCTTCCTGTGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGGAAGCACTGAGGGGTaGCAGATGCTGGCTATAGCT +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEGSTEG*QMLAIA
Trigger: AGCTATAGCCAGCATCTGGCACCCCTCAGTGCTTCC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGCTCCAGCTGCTGGTTaGGCTGATACATCTCCACAT +
Preference number: 4 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEAAPAAG*ADTSPH
Trigger: ATGTGGAGATGTATCAGCGCAACCAGCAGCTGGAGC...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGTCTCCAGCTTCGCCATaGTTAAGCCAGAAGGGCACT +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWESPASP*LSQKGT
Trigger: AGTGCCCTTCTGGCTTAATCATGGCGAAGCTGGAGA...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAATGTCCAGTCCGCCTTTaGGGCCCGCGGGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: SPLIVIAGEVEIYFLKRECPVRL*GPRGPV
Trigger: GACAGGGCCCCGCGGGCCTCAAAGGCGGACTGGACA...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGCTCCAGCTGCTGGTTaGGCTGATACATCTCCACAT +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEAPAAG*ADTSPH
Trigger: ATGTGGAGATGTATCAGCGCAACCAGCAGCTGGAGC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
3UTR CAA 72 bp AATAGGGCACTCCTATTTTTGTGGGGGATGCACAGCTaGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: NRALLFLWGMHS*LNSHQSWEEAG
Trigger: ACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAGTGCCCTATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR GCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAACGCTCTGCTCCAGGCTaGGCCGCAGAGCTGCCACCT +
Preference number: 4 (lower is better)
Translates to: SPLIVIAGEVEIYFLKRERSAPG*AAELPP
Trigger: AGGTGGCAGCTCTGCGGCGCAGCCTGGAGCAGAGCG...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGGTCCCATTGGTCTGTaGAGGACACAAGTTCTGCAT +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEGPIGL*RTQVLH
Trigger: ATGCAGAACTTGTGTCCTCCACAGACCAATGGGACC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAGACACAAGTTCTGCATaGAATGAAAGTTCTTGGGTA +
Preference number: 4 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPDTSSA*NESSWV
Trigger: TACCCAAGAACTTTCATTCCATGCAGAACTTGTGTC...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp GAGGGATTAGAAGAATGGGCAGTGGTTGCCAGAGTAGCCGCCAATCAAGGTCAAGACACAAGTTCTGCATaGAATGAAAGTTCTTGGGTA +
Preference number: 4 (lower is better)
Translates to: EGLEEWAVVARVAANQGQDTSSA*NESSWV
Trigger: TACCCAAGAACTTTCATTCCATGCAGAACTTGTGTC...TTGACCTTGATTGGCGGCTACTCTGGCAACCACTGCCCATTCTTCTAATCCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CCA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGACACAAGTTCTGCATaGAATGAAAGTTCTTGGGTA +
Preference number: 4 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEDTSSA*NESSWV
Trigger: TACCCAAGAACTTTCATTCCATGCAGAACTTGTGTC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR TCA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAACGGTGCCAATACGGTTaGTATGGCTGGTGGAAGCAC +
Preference number: 4 (lower is better)
Translates to: SPLIVIAGEVEIYFLKRERCQYG*YGWWKH
Trigger: GTGCTTCCACCAGCCATATCAACCGTATTGGCACCG...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 90 bp CGCTGGGCACGGCGGGCCACCTGCTGCAGCTTCCCACTGCAGCCCTaGCGGAGCTCGGCTAGCTCCCGCTCCCATGCCTTCTGCCGCTCC +
Preference number: 5 (lower is better)
Translates to: RWARRATCCSFPLQP*RSSASSRSHAFCRS
Trigger: GGAGCGGCAGAAGGCATGGGAGCGGGAGCTAGCCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGCCCAGCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 90 bp GCTGGGCACGCTGGGCACGGCGGGCCACCTGCTGCAGCTTCCCACTaGAGCCCTGCCGGAGCTCGGCTAGCTCCCGCTCCCATGCCTTCT +
Preference number: 5 (lower is better)
Translates to: AGHAGHGGPPAAASH*SPAGARLAPAPMPS
Trigger: AGAAGGCATGGGAGCGGGAGCTAGCCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGCCCAGCGTGCCCAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 90 bp TGCAGCTGTAGGCCCTGCTGGGCACGCTGGGCACGGCGGGCCACCTaGTGCAGCTTCCCACTGCAGCCCTGCCGGAGCTCGGCTAGCTCC +
Preference number: 5 (lower is better)
Translates to: CSCRPCWARWARRAT*CSFPLQPCRSSASS
Trigger: GGAGCTAGCCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGCCCAGCGTGCCCAGCAGGGCCTACAGCTGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 90 bp CTGCAGCCCTGCCGGAGCTCGGCTAGCTCCCGCTCCCATGCCTTCTaGCGCTCCTCCAACACCTGGGCCACGGCTGCCTCGCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: LQPCRSSASSRSHAF*RSSNTWATAASLCS
Trigger: GGAGCAGAGCGAGGCAGCCGTGGCCCAGGTGTTGGAGGAGCGGCAGAAGGCATGGGAGCGGGAGCTAGCCGAGCTCCGGCAGGGCTGCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 90 bp TCGGCTAGCTCCCGCTCCCATGCCTTCTGCCGCTCCTCCAACACCTaGGCCACGGCTGCCTCGCTCTGCTCCAGGCTGCGCCGCAGAGCT +
Preference number: 5 (lower is better)
Translates to: SASSRSHAFCRSSNT*ATAASLCSRLRRRA
Trigger: AGCTCTGCGGCGCAGCCTGGAGCAGAGCGAGGCAGCCGTGGCCCAGGTGTTGGAGGAGCGGCAGAAGGCATGGGAGCGGGAGCTAGCCGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 90 bp GCGCATCTTGGCCTCGTCACTCTCACAGGAGGCCAGCGCCTCCTGTaGCTCGACCAGGTCCACGGGGGTCAGCGCAGGCTTGAGGCAGGC +
Preference number: 5 (lower is better)
Translates to: AHLGLVTLTGGQRLL*LDQVHGGQRRLEAG
Trigger: GCCTGCCTCAAGCCTGCGCTGACCCCCGTGGACCTGGTCGAGCCACAGGAGGCGCTGGCCTCCTGTGAGAGTGACGAGGCCAAGATGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 90 bp AAACCAGAGAAGCGGCAGCCGCCACGCCAGCCTGCCGGCGCATCTTaGCCTCGTCACTCTCACAGGAGGCCAGCGCCTCCTGTGGCTCGA +
Preference number: 5 (lower is better)
Translates to: KPEKRQPPRQPAGAS*PRHSHRRPAPPVAR
Trigger: TCGAGCCACAGGAGGCGCTGGCCTCCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGGCTGGCGTGGCGGCTGCCGCTTCTCTGGTTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 90 bp TTCTCCTCCAACCACACCCGGCGCTCCTCCGCAAAGCTGGCACCCTaGCGCTCACGGGCACGCCGCTCAGCAGCCAGCTCAGCCTGCAAT +
Preference number: 5 (lower is better)
Translates to: FSSNHTRRSSAKLAP*RSRARRSAASSACN
Trigger: ATTGCAGGCTGAGCTGGCTGCTGAGCGGCGTGCCCGTGAGCGCCAGGGTGCCAGCTTTGCGGAGGAGCGCCGGGTGTGGTTGGAGGAGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 90 bp TCCCCATCAACAGAAACCAGAGAAGCGGCAGCCGCCACGCCAGCCTaGCGGCGCATCTTGGCCTCGTCACTCTCACAGGAGGCCAGCGCC +
Preference number: 5 (lower is better)
Translates to: SPSTETREAAAATPA*RRILASSLSQEASA
Trigger: GGCGCTGGCCTCCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGGCTGGCGTGGCGGCTGCCGCTTCTCTGGTTTCTGTTGATGGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 90 bp TCAGCTCCAGGCTGGCCTGTTTGCTGCCGAAGGAGTCCCTCAAGCTaGGCAGCTGCTCCTCCTTCTCCCGGAGCGAGGCCCTACCCTCCC +
Preference number: 5 (lower is better)
Translates to: SAPGWPVCCRRSPSS*AAAPPSPGARPYPP
Trigger: GGGAGGGTAGGGCCTCGCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCTTCGGCAGCAAACAGGCCAGCCTGGAGCTGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 90 bp CTGCTCCTCCTTCTCCCGGAGCGAGGCCCTACCCTCCCGAAGCTGTaGGCGCAGCCCCACGATCTCACTCAACTTCTGCGACACATCGGC +
Preference number: 5 (lower is better)
Translates to: LLLLLPERGPTLPKL*AQPHDLTQLLRHIG
Trigger: GCCGATGTGTCGCAGAAGTTGAGTGAGATCGTGGGGCTGCGCTCACAGCTTCGGGAGGGTAGGGCCTCGCTCCGGGAGAAGGAGGAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 90 bp AGGCTGGCCTGTTTGCTGCCGAAGGAGTCCCTCAAGCTGAGCAGCTaGTCCTCCTTCTCCCGGAGCGAGGCCCTACCCTCCCGAAGCTGT +
Preference number: 5 (lower is better)
Translates to: RLACLLPKESLKLSS*SSFSRSEALPSRSC
Trigger: ACAGCTTCGGGAGGGTAGGGCCTCGCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCTTCGGCAGCAAACAGGCCAGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACGGCGGGTCCTCAAGCTaGGGACCCTCCGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHGGSSS*GPSEAR
Trigger: CCTGGCCTCGGAGGGTCCCAAGCTTGAGGACCCGCC...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 90 bp GAGCACTGGTCTAGCTTGCCAGAGGTGGTCAGGAGCTTGGGTGGGTaGTTGGGTTCGCGATACTGGGGTGGAGCCTTGTCGCTGCCCCCA +
Preference number: 5 (lower is better)
Translates to: EHWSSLPEVVRSLGG*LGSRYWGGALSLPP
Trigger: TGGGGGCAGCGACAAGGCTCCACCCCAGTATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CCA 90 bp ACTGGTCTAGCTTGCCAGAGGTGGTCAGGAGCTTGGGTGGGTGATTaGGTTCGCGATACTGGGGTGGAGCCTTGTCGCTGCCCCCACTGC +
Preference number: 5 (lower is better)
Translates to: TGLACQRWSGAWVGD*VRDTGVEPCRCPHC
Trigger: GCAGTGGGGGCAGCGACAAGGCTCCACCCCAGTATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAGACCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CCA 90 bp GTGGCTCCGAGCACTGGTCTAGCTTGCCAGAGGTGGTCAGGAGCTTaGGTGGGTGATTGGGTTCGCGATACTGGGGTGGAGCCTTGTCGC +
Preference number: 5 (lower is better)
Translates to: VAPSTGLACQRWSGA*VGDWVRDTGVEPCR
Trigger: GCGACAAGGCTCCACCCCAGTATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCTCGGAGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGGGCGGGTCCTCAAGCTaGGGACCCTCCGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: VTNPLPPVPKIPSWGGREGGSSS*GPSEAR
Trigger: CCTGGCCTCGGAGGGTCCCAAGCTTGAGGACCCGCC...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGCTCCAGCTCTTCCCGTaGCCTTATCAGCTGGGCCGC +
Preference number: 5 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWLQLFP*PYQLGR
Trigger: GCGGCCCAGCTGATAAGGCAACGGGAAGAGCTGGAG...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TATCTCCAACACGAGGCTTCCCCAGAAAGGGAGCCTTGCTCCATGCGCCTGGGAACCAGGGAAACTGCCTaGGTTGCCCCCACCCCCTGT +
Preference number: 5 (lower is better)
Translates to: YLQHEASPEREPCSMRLGTRETA*VAPTPC
Trigger: ACAGGGGGTGGGGGCAACCAAGGCAGTTTCCCTGGT...TCCCAGGCGCATGGAGCAAGGCTCCCTTTCTGGGGAAGCCTCGTGTTGGAGATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp ACACAGAGGGACACATGCTCAGAACTAGTCCAGGCTCTGAGGCTGGAGCCCAAGTACTGGGGTGGAGCCTaGTCGCTGCCCCCACTGCTG +
Preference number: 5 (lower is better)
Translates to: TQRDTCSELVQALRLEPKYWGGA*SLPPLL
Trigger: CAGCAGTGGGGGCAGCGACAAGGCTCCACCCCAGTA...CTTGGGCTCCAGCCTCAGAGCCTGGACTAGTTCTGAGCATGTGTCCCTCTGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS TCA 90 bp CAGCTCGCCATTGAGGTAGAGAGAGTTGGCGAGAACCTTGTCCTCTaGTGGGTAGCGACCAGGTCTCTCCCTGTTGGCCCCGCTACCACC +
Preference number: 5 (lower is better)
Translates to: QLAIEVERVGENLVL*WVATRSLPVGPATT
Trigger: GGTGGTAGCGGGGCCAACAGGGAGAGACCTGGTCGCTACCCATCAGAGGACAAGGTTCTCGCCAACTCTCTCTACCTCAATGGCGAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS GCA 90 bp TCCTCCAGCTCTTCCCGTTGCCTTATCAGCTGGGCCGCCTCCTCCTaGAGCTGTTTCTTGTCCTGCTGTAACCGCAGCACCTGCAGCTGT +
Preference number: 5 (lower is better)
Translates to: SSSSSRCLISWAASS*SCFLSCCNRSTCSC
Trigger: ACAGCTGCAGGTGCTGCGGTTACAGCAGGACAAGAAACAGCTGCAGGAGGAGGCGGCCCAGCTGATAAGGCAACGGGAAGAGCTGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 90 bp CGAGAACCTTGTCCTCTGATGGGTAGCGACCAGGTCTCTCCCTGTTaGCCCCGCTACCACCGCTTCTTGGACCAGGGAAACTGCCTTGGT +
Preference number: 5 (lower is better)
Translates to: REPCPLMGSDQVSPC*PRYHRFLDQGNCLG
Trigger: ACCAAGGCAGTTTCCCTGGTCCAAGAAGCGGTGGTAGCGGGGCCAACAGGGAGAGACCTGGTCGCTACCCATCAGAGGACAAGGTTCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CCA 90 bp ATGGCCGAACTAGTGGCTCCGAGCACTGGTCTAGCTTGCCAGAGGTaGTCAGGAGCTTGGGTGGGTGATTGGGTTCGCGATACTGGGGTG +
Preference number: 5 (lower is better)
Translates to: MAELVAPSTGLACQR*SGAWVGDWVRDTGV
Trigger: CACCCCAGTATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCTCGGAGCCACTAGTTCGGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGGCGGGTCCTCAAGCTaGGGACCCTCCGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: PLGIEFPASALTSSLYTEGGSSS*GPSEAR
Trigger: CCTGGCCTCGGAGGGTCCCAAGCTTGAGGACCCGCC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGATTGTCCAGTCCGCCTTaGAGGCCCGCGGGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERLSSPP*RPAGPC
Trigger: ACAGGGCCCCGCGGGCCTCAAAGGCGGACTGGACAA...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 90 bp GAGGCCCGCGGGGCCCTGTCGTCCCTCAGGGGTCCCATTGGTCTGTaGAGGACACAAGTTCTGCATGGAATGAAAGTTCTTGGGTACAAC +
Preference number: 5 (lower is better)
Translates to: EARGALSSLRGPIGL*RTQVLHGMKVLGYN
Trigger: GTTGTACCCAAGAACTTTCATTCCATGCAGAACTTGTGTCCTCCACAGACCAATGGGACCCCTGAGGGACGACAGGGCCCCGCGGGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGATACTGGGGTGGAGCCTaGTCGCTGCCCCCACTGCTG +
Preference number: 5 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERYWGGA*SLPPLL
Trigger: CAGCAGTGGGGGCAGCGACAAGGCTCCACCCCAGTA...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGTCCTGCAGCTGTTTCTaGTCCTGCTGTAACCGCAGC +
Preference number: 5 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWSCSCF*SCCNRS
Trigger: GCTGCGGTTACAGCAGGACAAGAAACAGCTGCAGGA...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp CTCCCTCAGGCTGTGTGGCCTAGGAGGGCACAGACAGTAGCACTGGACAGATGGTTGGGTACAACAGGCTaGAAGGCTGATGGCCGAACT +
Preference number: 5 (lower is better)
Translates to: LPQAVWPRRAQTVALDRWLGTTG*KADGRT
Trigger: AGTTCGGCCATCAGCCTTCAAGCCTGTTGTACCCAA...CCATCTGTCCAGTGCTACTGTCTGTGCCCTCCTAGGCCACACAGCCTGAGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCACCCTCAGGGGTCCCATaGGTCTGTGGAGGACACAAG +
Preference number: 5 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSPSGVP*VCGGHK
Trigger: CTTGTGTCCTCCACAGACCAATGGGACCCCTGAGGG...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTTTGTCCAGTCCGCCTTaGAGGCCCGCGGGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: FLWGMHSLLNSHQSWEEALSSPP*RPAGPC
Trigger: ACAGGGCCCCGCGGGCCTCAAAGGCGGACTGGACAA...AGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACTCCTGCAGCTGTTTCTaGTCCTGCTGTAACCGCAGC +
Preference number: 5 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHSCSCF*SCCNRS
Trigger: GCTGCGGTTACAGCAGGACAAGAAACAGCTGCAGGA...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCACTCCAGCTCTTCCCGTaGCCTTATCAGCTGGGCCGC +
Preference number: 5 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSLQLFP*PYQLGR
Trigger: GCGGCCCAGCTGATAAGGCAACGGGAAGAGCTGGAG...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGGGGAAACTGCCTTGGTaGCCCCCACCCCCTGTTCGA +
Preference number: 5 (lower is better)
Translates to: PLGIEFPASALTSSLYTEGKLPW*PPPPVR
Trigger: TCGAACAGGGGGTGGGGGCAACCAAGGCAGTTTCCC...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp CCCCTTGGGATTGAGTTTCCAGCCTCTGCTCTCACTTCCTCACTATACACAGAGACCAGGGAAACTGCCTaGGTTGCCCCCACCCCCTGT +
Preference number: 5 (lower is better)
Translates to: PLGIEFPASALTSSLYTETRETA*VAPTPC
Trigger: ACAGGGGGTGGGGGCAACCAAGGCAGTTTCCCTGGT...CTCTGTGTATAGTGAGGAAGTGAGAGCAGAGGCTGGAAACTCAATCCCAAGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp AGGGGCTGGTCACAGCTGCTTCGAGAACCTCTTTGGTCTGGGGATGTGCAGCACTTGGGTACAACAGGCTaGAAGGCTGATGGCCGAACT +
Preference number: 5 (lower is better)
Translates to: RGWSQLLREPLWSGDVQHLGTTG*KADGRT
Trigger: AGTTCGGCCATCAGCCTTCAAGCCTGTTGTACCCAA...GTGCTGCACATCCCCAGACCAAAGAGGTTCTCGAAGCAGCTGTGACCAGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 90 bp CATTACCACAGACATCTGTGTGGTCACTGCCCCGCAGCTCGCCATTaGGGTAGAGAGAGTTGGCGAGAACCTTGTCCTCTGATGGGTAGC +
Preference number: 5 (lower is better)
Translates to: HYHRHLCGHCPAARH*GRESWREPCPLMGS
Trigger: GCTACCCATCAGAGGACAAGGTTCTCGCCAACTCTCTCTACCTCAATGGCGAGCTGCGGGGCAGTGACCACACAGATGTCTGTGGTAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS GCA 90 bp AGCGGTGCCAATACGGTTGATATGGCTGGTGGAAGCACTGAGGGGTaGCAGATGCTGGCTATAGCTGGAGCTATAGGTGGGCAAGCTTGT +
Preference number: 5 (lower is better)
Translates to: SGANTVDMAGGSTEG*QMLAIAGAIGGQAC
Trigger: ACAAGCTTGCCCACCTATAGCTCCAGCTATAGCCAGCATCTGGCACCCCTCAGTGCTTCCACCAGCCATATCAACCGTATTGGCACCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCACCCTCAGGGGTCCCATaGGTCTGTGGAGGACACAAG +
Preference number: 5 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPPSGVP*VCGGHK
Trigger: CTTGTGTCCTCCACAGACCAATGGGACCCCTGAGGG...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp GAGATGAATGGAAGGGACATTGGTGACTCCGACCTTCAGACAGGGCACGTGTCAGTCATGGTCCGAGACTaGTCCAGTCCGCCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: EMNGRDIGDSDLQTGHVSVMVRD*SSPPLR
Trigger: CCTCAAAGGCGGACTGGACAAGTCTCGGACCATGAC...TGACACGTGCCCTGTCTGAAGGTCGGAGTCACCAATGTCCCTTCCATTCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp GTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCTGGTCAGCGGTGCCAATACGGTaGATATGGCTGGTGGAAGCA +
Preference number: 5 (lower is better)
Translates to: VGDAQLVKQSPVMGGGWSAVPIR*IWLVEA
Trigger: TGCTTCCACCAGCCATATCAACCGTATTGGCACCGC...TGACCAGCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp GTTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGGCGGTGCCAATACGGTaGATATGGCTGGTGGAAGCA +
Preference number: 5 (lower is better)
Translates to: VTNPLPPVPKIPSWGGREAVPIR*IWLVEA
Trigger: TGCTTCCACCAGCCATATCAACCGTATTGGCACCGC...CTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCCTCCAGCTCTTCCCGTaGCCTTATCAGCTGGGCCGC +
Preference number: 5 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGLQLFP*PYQLGR
Trigger: GCGGCCCAGCTGATAAGGCAACGGGAAGAGCTGGAG...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCAGTCATGGTCCGAGACTaGTCCAGTCCGCCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPVMVRD*SSPPLR
Trigger: CCTCAAAGGCGGACTGGACAAGTCTCGGACCATGAC...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TTACCAACCCTCTCCCTCCTGTCCCCAAGATTCCATCTTGGGGTGGAAGAGAGATTGGGTACAACAGGCTaGAAGGCTGATGGCCGAACT +
Preference number: 5 (lower is better)
Translates to: LPTLSLLSPRFHLGVEERLGTTG*KADGRT
Trigger: AGTTCGGCCATCAGCCTTCAAGCCTGTTGTACCCAA...TCTCTCTTCCACCCCAAGATGGAATCTTGGGGACAGGAGGGAGAGGGTTGGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp ATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGAGGCGTCATGGTCCGAGACTaGTCCAGTCCGCCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: IFVGDAQLVKQSPVMGGGVMVRD*SSPPLR
Trigger: CCTCAAAGGCGGACTGGACAAGTCTCGGACCATGAC...GCCTCCTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp AAGGAGGCCAAGGGGAGAGATCGAGGGAAAACACAGGAAGACATCAGACATCCATCCTGCAGCTGTTTCTaGTCCTGCTGTAACCGCAGC +
Preference number: 5 (lower is better)
Translates to: KEAKGRDRGKTQEDIRHPSCSCF*SCCNRS
Trigger: GCTGCGGTTACAGCAGGACAAGAAACAGCTGCAGGA...TGGATGTCTGATGTCTTCCTGTGTTTTCCCTCGATCTCTCCCCTTGGCCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 90 bp GACACAAGTTCTGCATGGAATGAAAGTTCTTGGGTACAACAGGCTTaGAGGCTGATGGCCGAACTAGTGGCTCCGAGCACTGGTCTAGCT +
Preference number: 5 (lower is better)
Translates to: DTSSAWNESSWVQQA*RLMAELVAPSTGLA
Trigger: AGCTAGACCAGTGCTCGGAGCCACTAGTTCGGCCATCAGCCTTCAAGCCTGTTGTACCCAAGAACTTTCATTCCATGCAGAACTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS-3UTR CAA 90 bp CTCCTATTTTTGTGGGGGATGCACAGCTTGTTAAACAGTCACCAGTCATGGGAGGCGGTGCCAATACGGTaGATATGGCTGGTGGAAGCA +
Preference number: 5 (lower is better)
Translates to: LLFLWGMHSLLNSHQSWEAVPIR*IWLVEA
Trigger: TGCTTCCACCAGCCATATCAACCGTATTGGCACCGC...CTCCCATGACTGGTGACTGTTTAACAAGCTGTGCATCCCCCACAAAAATAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAATTGTCCAGTCCGCCTTaGAGGCCCGCGGGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: SPLIVIAGEVEIYFLKRELSSPP*RPAGPC
Trigger: ACAGGGCCCCGCGGGCCTCAAAGGCGGACTGGACAA...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS-3UTR CAA 90 bp TCTCCTCTGATTGTTATTGCTGGTGAAGTGGAAATTTACTTTCTTAAGAGAGAAGGGAAACTGCCTTGGTaGCCCCCACCCCCTGTTCGA +
Preference number: 5 (lower is better)
Translates to: SPLIVIAGEVEIYFLKREGKLPW*PPPPVR
Trigger: TCGAACAGGGGGTGGGGGCAACCAAGGCAGTTTCCC...TTCTCTCTTAAGAAAGTAAATTTCCACTTCACCAGCAATAACAATCAGAGGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS GCA 72 bp GCTGGGCACGGCGGGCCACCTGCTGCAGCTTCCCACTaGAGCCCTGCCGGAGCTCGGCTAGCTCCCGCTCCC +
Preference number: 6 (lower is better)
Translates to: AGHGGPPAAASH*SPAGARLAPAP
Trigger: GGGAGCGGGAGCTAGCCGAGCTCCGGCAGGGCTGCAGTGGGAAGCTGCAGCAGGTGGCCCGCCGTGCCCAGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 72 bp TGCCGGAGCTCGGCTAGCTCCCGCTCCCATGCCTTCTaGCGCTCCTCCAACACCTGGGCCACGGCTGCCTCG +
Preference number: 6 (lower is better)
Translates to: CRSSASSRSHAF*RSSNTWATAAS
Trigger: CGAGGCAGCCGTGGCCCAGGTGTTGGAGGAGCGGCAGAAGGCATGGGAGCGGGAGCTAGCCGAGCTCCGGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 72 bp CGCTCACGGGCACGCCGCTCAGCAGCCAGCTCAGCCTaGAATCTCCCCACCTCCCTGCGTAGGGCCCGTGTC +
Preference number: 6 (lower is better)
Translates to: RSRARRSAASSA*NLPTSLRRARV
Trigger: GACACGGGCCCTACGCAGGGAGGTGGGGAGATTGCAGGCTGAGCTGGCTGCTGAGCGGCGTGCCCGTGAGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp TCCCGCTCCCATGCCTTCTGCCGCTCCTCCAACACCTaGGCCACGGCTGCCTCGCTCTGCTCCAGGCTGCGC +
Preference number: 6 (lower is better)
Translates to: SRSHAFCRSSNT*ATAASLCSRLR
Trigger: GCGCAGCCTGGAGCAGAGCGAGGCAGCCGTGGCCCAGGTGTTGGAGGAGCGGCAGAAGGCATGGGAGCGGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp AAGCGGCAGCCGCCACGCCAGCCTGCCGGCGCATCTTaGCCTCGTCACTCTCACAGGAGGCCAGCGCCTCCT +
Preference number: 6 (lower is better)
Translates to: KRQPPRQPAGAS*PRHSHRRPAPP
Trigger: AGGAGGCGCTGGCCTCCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGGCTGGCGTGGCGGCTGCCGCTT
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp AACCACACCCGGCGCTCCTCCGCAAAGCTGGCACCCTaGCGCTCACGGGCACGCCGCTCAGCAGCCAGCTCA +
Preference number: 6 (lower is better)
Translates to: NHTRRSSAKLAP*RSRARRSAASS
Trigger: TGAGCTGGCTGCTGAGCGGCGTGCCCGTGAGCGCCAGGGTGCCAGCTTTGCGGAGGAGCGCCGGGTGTGGTT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp TCTCCTCCAACCACACCCGGCGCTCCTCCGCAAAGCTaGCACCCTGGCGCTCACGGGCACGCCGCTCAGCAG +
Preference number: 6 (lower is better)
Translates to: SPPTTPGAPPQS*HPGAHGHAAQQ
Trigger: CTGCTGAGCGGCGTGCCCGTGAGCGCCAGGGTGCCAGCTTTGCGGAGGAGCGCCGGGTGTGGTTGGAGGAGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CAA 90 bp GAAACCAGAGAAGCGGCAGCCGCCACGCCAGCCTGCCGGCGCATCTaGGCCTCGTCACTCTCACAGGAGGCCAGCGCCTCCTGTGGCTCG +
Preference number: 6 (lower is better)
Translates to: ETREAAAATPACRRI*ASSLSQEASASCGS
Trigger: CGAGCCACAGGAGGCGCTGGCCTCCTGTGAGAGTGACGAGGCCAAGATGCGCCGGCAGGCTGGCGTGGCGGCTGCCGCTTCTCTGGTTTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp GGCCTCGTCACTCTCACAGGAGGCCAGCGCCTCCTGTaGCTCGACCAGGTCCACGGGGGTCAGCGCAGGCTT +
Preference number: 6 (lower is better)
Translates to: GLVTLTGGQRLL*LDQVHGGQRRL
Trigger: AAGCCTGCGCTGACCCCCGTGGACCTGGTCGAGCCACAGGAGGCGCTGGCCTCCTGTGAGAGTGACGAGGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp CGCCCTCCCCGGATCCCAGGTGGCCTGACCGCCCCATaGATGATGACGACCCACTCTTACTGGAAGCCCGCC +
Preference number: 6 (lower is better)
Translates to: RPPRIPGGLTAP*MMTTHSYWKPA
Trigger: GGCGGGCTTCCAGTAAGAGTGGGTCGTCATCATCCATGGGGCGGTCAGGCCACCTGGGATCCGGGGAGGGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 72 bp GGCTGGCCTGTTTGCTGCCGAAGGAGTCCCTCAAGCTaGGCAGCTGCTCCTCCTTCTCCCGGAGCGAGGCCC +
Preference number: 6 (lower is better)
Translates to: GWPVCCRRSPSS*AAAPPSPGARP
Trigger: GGGCCTCGCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCTTCGGCAGCAAACAGGCCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 72 bp CTCCAGCTCCTGGATCAGCGCACTGGGCGAGGGTGGTaGACAGGCTGCAAATGGCAGGCCCCCATTTCCGCC +
Preference number: 6 (lower is better)
Translates to: LQLLDQRTGRGW*TGCKWQAPISA
Trigger: GGCGGAAATGGGGGCCTGCCATTTGCAGCCTGTTCACCACCCTCGCCCAGTGCGCTGATCCAGGAGCTGGAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp AGGTCTCTCCCTGTTGGCCCCGCTACCACCGCTTCTTaGACCAGGGAAACTGCCTTGGTTGCCCCCACCCCC +
Preference number: 6 (lower is better)
Translates to: RSLPVGPATTAS*TRETALVAPTP
Trigger: GGGGGTGGGGGCAACCAAGGCAGTTTCCCTGGTCCAAGAAGCGGTGGTAGCGGGGCCAACAGGGAGAGACCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CAA 72 bp CCCGCTACCACCGCTTCTTGGACCAGGGAAACTGCCTaGGTTGCCCCCACCCCCTGTTCGAGTGCCCACGCT +
Preference number: 6 (lower is better)
Translates to: PATTASWTRETA*VAPTPCSSAHA
Trigger: AGCGTGGGCACTCGAACAGGGGGTGGGGGCAACCAAGGCAGTTTCCCTGGTCCAAGAAGCGGTGGTAGCGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CAA 72 bp CAGGTCTCTCCCTGTTGGCCCCGCTACCACCGCTTCTaGGACCAGGGAAACTGCCTTGGTTGCCCCCACCCC +
Preference number: 6 (lower is better)
Translates to: QVSPCWPRYHRF*DQGNCLGCPHP
Trigger: GGGGTGGGGGCAACCAAGGCAGTTTCCCTGGTCCAAGAAGCGGTGGTAGCGGGGCCAACAGGGAGAGACCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS TCA 72 bp CTTCTCCCGGAGCGAGGCCCTACCCTCCCGAAGCTGTaGGCGCAGCCCCACGATCTCACTCAACTTCTGCGA +
Preference number: 6 (lower is better)
Translates to: LLPERGPTLPKL*AQPHDLTQLLR
Trigger: TCGCAGAAGTTGAGTGAGATCGTGGGGCTGCGCTCACAGCTTCGGGAGGGTAGGGCCTCGCTCCGGGAGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 72 bp TGTTTGCTGCCGAAGGAGTCCCTCAAGCTGAGCAGCTaGTCCTCCTTCTCCCGGAGCGAGGCCCTACCCTCC +
Preference number: 6 (lower is better)
Translates to: CLLPKESLKLSS*SSFSRSEALPS
Trigger: GGAGGGTAGGGCCTCGCTCCGGGAGAAGGAGGAGCAGCTGCTCAGCTTGAGGGACTCCTTCGGCAGCAAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp GCTTGCCAGAGGTGGTCAGGAGCTTGGGTGGGTGATTaGGTTCGCGATACTGGGGTGGAGCCTTGTCGCTGC +
Preference number: 6 (lower is better)
Translates to: ACQRWSGAWVGD*VRDTGVEPCRC
Trigger: GCAGCGACAAGGCTCCACCCCAGTATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS GCA 72 bp CCCCACGCTCCCGAAGTCGCCGCTCCAGCTGCTGGTTaGGCTGATACATCTCCACATAACTCAGCTGGAGCT +
Preference number: 6 (lower is better)
Translates to: PHAPEVAAPAAG*ADTSPHNSAGA
Trigger: AGCTCCAGCTGAGTTATGTGGAGATGTATCAGCGCAACCAGCAGCTGGAGCGGCGACTTCGGGAGCGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS CCA 72 bp AGCACTGGTCTAGCTTGCCAGAGGTGGTCAGGAGCTTaGGTGGGTGATTGGGTTCGCGATACTGGGGTGGAG +
Preference number: 6 (lower is better)
Translates to: STGLACQRWSGA*VGDWVRDTGVE
Trigger: CTCCACCCCAGTATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CCA 72 bp CTAGTGGCTCCGAGCACTGGTCTAGCTTGCCAGAGGTaGTCAGGAGCTTGGGTGGGTGATTGGGTTCGCGAT +
Preference number: 6 (lower is better)
Translates to: LVAPSTGLACQR*SGAWVGDWVRD
Trigger: ATCGCGAACCCAATCACCCACCCAAGCTCCTGACCACCTCTGGCAAGCTAGACCAGTGCTCGGAGCCACTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS TCA 72 bp ATTGAGGTAGAGAGAGTTGGCGAGAACCTTGTCCTCTaGTGGGTAGCGACCAGGTCTCTCCCTGTTGGCCCC +
Preference number: 6 (lower is better)
Translates to: IEVERVGENLVL*WVATRSLPVGP
Trigger: GGGGCCAACAGGGAGAGACCTGGTCGCTACCCATCAGAGGACAAGGTTCTCGCCAACTCTCTCTACCTCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS TCA 72 bp AGACATCTGTGTGGTCACTGCCCCGCAGCTCGCCATTaGGGTAGAGAGAGTTGGCGAGAACCTTGTCCTCTG +
Preference number: 6 (lower is better)
Translates to: RHLCGHCPAARH*GRESWREPCPL
Trigger: CAGAGGACAAGGTTCTCGCCAACTCTCTCTACCTCAATGGCGAGCTGCGGGGCAGTGACCACACAGATGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS TCA 72 bp GATCAGCGCGCACAGGTAACGTCTCCAGCTTCGCCATaGTTAAGCCAGAAGGGCACTTTCCAAAGAGGTGGG +
Preference number: 6 (lower is better)
Translates to: DQRAQVTSPASP*LSQKGTFQRGG
Trigger: CCCACCTCTTTGGAAAGTGCCCTTCTGGCTTAATCATGGCGAAGCTGGAGACGTTACCTGTGCGCGCTGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 72 bp CCTGTTCGAGTGCCCACGCTTTTCATAGGAAACTCCTaGGCATGGGTCACCCCACTACCCACACTGCCCATA +
Preference number: 6 (lower is better)
Translates to: PVRVPTLFIGNS*AWVTPLPTLPI
Trigger: TATGGGCAGTGTGGGTAGTGGGGTGACCCATGCTCAGGAGTTTCCTATGAAAAGCGTGGGCACTCGAACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS CCA 72 bp GGGGCCCTGTCGTCCCTCAGGGGTCCCATTGGTCTGTaGAGGACACAAGTTCTGCATGGAATGAAAGTTCTT +
Preference number: 6 (lower is better)
Translates to: GALSSLRGPIGL*RTQVLHGMKVL
Trigger: AAGAACTTTCATTCCATGCAGAACTTGTGTCCTCCACAGACCAATGGGACCCCTGAGGGACGACAGGGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS GCA 72 bp AATACGGTTGATATGGCTGGTGGAAGCACTGAGGGGTaGCAGATGCTGGCTATAGCTGGAGCTATAGGTGGG +
Preference number: 6 (lower is better)
Translates to: NTVDMAGGSTEG*QMLAIAGAIGG
Trigger: CCCACCTATAGCTCCAGCTATAGCCAGCATCTGGCACCCCTCAGTGCTTCCACCAGCCATATCAACCGTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
ENSMUST00000110260.8
CDS TCA 72 bp TCTGCATGGAATGAAAGTTCTTGGGTACAACAGGCTTaGAGGCTGATGGCCGAACTAGTGGCTCCGAGCACT +
Preference number: 6 (lower is better)
Translates to: SAWNESSWVQQA*RLMAELVAPST
Trigger: AGTGCTCGGAGCCACTAGTTCGGCCATCAGCCTTCAAGCCTGTTGTACCCAAGAACTTTCATTCCATGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045761.7
ENSMUST00000089561.10
CDS TCA 72 bp TCTGCATGGAATGAAAGTTCTTGGGTACAACAGGCTTaGAGGCTGATGGCCGAACTAGTGGCTCCGAGCAAC +
Preference number: 6 (lower is better)
Translates to: SAWNESSWVQQA*RLMAELVAPSN
Trigger: GTTGCTCGGAGCCACTAGTTCGGCCATCAGCCTTCAAGCCTGTTGTACCCAAGAACTTTCATTCCATGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110260.8