RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LZTR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022761

Ensembl transcript IDs: ENSMUST00000023444.11, ENSMUST00000231292.2, ENSMUST00000231307.2, ENSMUST00000231994.2, ENSMUST00000232242.2, ENSMUST00000232372.2

Found 350 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCAAAGGCCACCATGGTGTGTCCGTAGCGCCGCTGTGGCGGGGGTaGGGAGCCCCGAAGCAGGTGCTCAGTAGGGATGCGTGTCCACGT +
Preference number: 1 (lower is better)
Translates to: VKGHHGVSVAPLWRG*GAPKQVLSRDACPR
Trigger: ACGTGGACACGCATCCCTACTGAGCACCTGCTTCGGGGCTCCCCACCCCCGCCACAGCGGCGCTACGGACACACCATGGTGGCCTTTGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp GGAGCTAGGGCCCCATCTTCCTCTAGCTTCTGGGCCAGCCACTCTTaGGCCTGTACGATCTTCCTACGAAGCCACCGGCTCCTTGCAGTG +
Preference number: 1 (lower is better)
Translates to: GARAPSSSSFWASHS*ACTIFLRSHRLLAV
Trigger: CACTGCAAGGAGCCGGTGGCTTCGTAGGAAGATCGTACAGGCTCAAGAGTGGCTGGCCCAGAAGCTAGAGGAAGATGGGGCCCTAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp GAACATCTTATCCCGGCACACAGCCACAGGGAAGTTGCAACAGGATaGGGGGATCTCACCACTCTGGGCCACCTGGGGTATGGGCACAGC +
Preference number: 1 (lower is better)
Translates to: EHLIPAHSHREVATG*GDLTTLGHLGYGHS
Trigger: GCTGTGCCCATACCCCAGGTGGCCCAGAGTGGTGAGATCCCCCCATCCTGTTGCAACTTCCCTGTGGCTGTGTGCCGGGATAAGATGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp GTGCCCCCAAAGATGTACATGGCATCAGAGATGACAGCGGCAGCATaGAAGAGCCTCCCGCTGGGCAGCTCTGATGCCAGATGGACAGGC +
Preference number: 1 (lower is better)
Translates to: VPPKMYMASEMTAAA*KSLPLGSSDARWTG
Trigger: GCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCATCTCTGATGCCATGTACATCTTTGGGGGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp TATACTCAGGACAGGAAGAGAGGTTCCCTACCAATGTCCACAGGCTaGTCGGAGGGTGTGCGAGGGGGCGGCTGCTGCTTCCGACGAACT +
Preference number: 1 (lower is better)
Translates to: YTQDRKRGSLPMSTG*SEGVRGGGCCFRRT
Trigger: AGTTCGTCGGAAGCAGCAGCCGCCCCCTCGCACACCCTCCGATCAGCCTGTGGACATTGGTAGGGAACCTCTCTTCCTGTCCTGAGTATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp GGATGGCTTTGTGGGCTGGCCGTGGCTGGCCATCTAGCAGTAGTGTaGTGTCACAGAACTCCGAGCCTGCTCCCTCCAGGTAAGCCTTCA +
Preference number: 1 (lower is better)
Translates to: GWLCGLAVAGHLAVV*CHRTPSLLPPGKPS
Trigger: TGAAGGCTTACCTGGAGGGAGCAGGCTCGGAGTTCTGTGACATCACACTACTGCTAGATGGCCAGCCACGGCCAGCCCACAAAGCCATCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp TCAGAGATGTGGGAGGCCAAGGAGTCTATGATGTCCAGCAGCAGCTaGTGGCTCAGCAACCGCAGCGTGGGCAGCTTAGAGACCTTGGTG +
Preference number: 1 (lower is better)
Translates to: SEMWEAKESMMSSSS*WLSNRSVGSLETLV
Trigger: CACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGACATCATAGACTCCTTGGCCTCCCACATCTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp TGGAAGAGCCTCCCGCTGGGCAGCTCTGATGCCAGATGGACAGGCTaGTTGGCTGAAGTGGTGCCGAAGTCTAAGCCAAACACATCTCTG +
Preference number: 1 (lower is better)
Translates to: WKSLPLGSSDARWTG*LAEVVPKSKPNTSL
Trigger: CAGAGATGTGTTTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp AGAGCCTCCCGCTGGGCAGCTCTGATGCCAGATGGACAGGCTGCTTaGCTGAAGTGGTGCCGAAGTCTAAGCCAAACACATCTCTGGACT +
Preference number: 1 (lower is better)
Translates to: RASRWAALMPDGQAA*LKWCRSLSQTHLWT
Trigger: AGTCCAGAGATGTGTTTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp GAGATGTGGGAGGCCAAGGAGTCTATGATGTCCAGCAGCAGCTGCTaGCTCAGCAACCGCAGCGTGGGCAGCTTAGAGACCTTGGTGAAT +
Preference number: 1 (lower is better)
Translates to: EMWEAKESMMSSSSC*LSNRSVGSLETLVN
Trigger: ATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGACATCATAGACTCCTTGGCCTCCCACATCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp CCTCGCCATAGTAGATGTAGCGTAGCATGGACTCGAAGGCCTGTCTaGTGGGAACCATCTCCCCAATGGAGATGTTCACCTGCCCGTCCT +
Preference number: 1 (lower is better)
Translates to: PRHSRCSVAWTRRPV*WEPSPQWRCSPARP
Trigger: AGGACGGGCAGGTGAACATCTCCATTGGGGAGATGGTTCCCAGCAGACAGGCCTTCGAGTCCATGCTACGCTACATCTACTATGGCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp GAGGCCTCGATGTACTGCCGACACAGCTGCTCAAGGCGACACAGCTaGAAGCTCAGCGCCAACTTATACACATCCATGATGAGCAGCACG +
Preference number: 1 (lower is better)
Translates to: EASMYCRHSCSRRHS*KLSANLYTSMMSST
Trigger: CGTGCTGCTCATCATGGATGTGTATAAGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp GCTGGGAACCATCTCCCCAATGGAGATGTTCACCTGCCCGTCCTCTaGCATGAACGACCGAAACATGGCCTCAAAGTAGCTAGAACGGGC +
Preference number: 1 (lower is better)
Translates to: AGNHLPNGDVHLPVL*HERPKHGLKVARTG
Trigger: GCCCGTTCTAGCTACTTTGAGGCCATGTTTCGGTCGTTCATGCCAGAGGACGGGCAGGTGAACATCTCCATTGGGGAGATGGTTCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp CGCCATAGTAGATGTAGCGTAGCATGGACTCGAAGGCCTGTCTGCTaGGAACCATCTCCCCAATGGAGATGTTCACCTGCCCGTCCTCTG +
Preference number: 1 (lower is better)
Translates to: RHSRCSVAWTRRPVC*EPSPQWRCSPARPL
Trigger: CAGAGGACGGGCAGGTGAACATCTCCATTGGGGAGATGGTTCCCAGCAGACAGGCCTTCGAGTCCATGCTACGCTACATCTACTATGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp TGTTGTTGTCTACAGTGCCCCCAAAGATGTACATGGCATCAGAGATaGCAGCGGCAGCATGGAAGAGCCTCCCGCTGGGCAGCTCTGATG +
Preference number: 1 (lower is better)
Translates to: CCCLQCPQRCTWHQR*QRQHGRASRWAALM
Trigger: CATCAGAGCTGCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCATCTCTGATGCCATGTACATCTTTGGGGGCACTGTAGACAACAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp CCACTCTTGAGCCTGTACGATCTTCCTACGAAGCCACCGGCTCCTTaGAGTGACGATGGCAACATGGCCTTGCACACACTCTTCCTTCTC +
Preference number: 1 (lower is better)
Translates to: PLLSLYDLPTKPPAP*SDDGNMALHTLFLL
Trigger: GAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTGGCTTCGTAGGAAGATCGTACAGGCTCAAGAGTGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp CCCAGCTGTAGCCTGGCAGCACTCTCACACACAACCAGAACATTCTaGAGATCTACAGAGGCCTCGATGTACTGCCGACACAGCTGCTCA +
Preference number: 1 (lower is better)
Translates to: PSCSLAALSHTTRTF*RSTEASMYCRHSCS
Trigger: TGAGCAGCTGTGTCGGCAGTACATCGAGGCCTCTGTAGATCTGCAGAATGTTCTGGTTGTGTGTGAGAGTGCTGCCAGGCTACAGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp CCTTATCTCCTCCCACATGCCCTGTATGTCCAGCTCCCAGTCTCGTaGGACATATCCCTCCAGGCCCAGCTTTTGGACTATCATGCCAGT +
Preference number: 1 (lower is better)
Translates to: PYLLPHALYVQLPVS*DISLQAQLLDYHAS
Trigger: ACTGGCATGATAGTCCAAAAGCTGGGCCTGGAGGGATATGTCGCACGAGACTGGGAGCTGGACATACAGGGCATGTGGGAGGAGATAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp CTTGAGCCTGTACGATCTTCCTACGAAGCCACCGGCTCCTTGCAGTaGCGATGGCAACATGGCCTTGCACACACTCTTCCTTCTCACCAA +
Preference number: 1 (lower is better)
Translates to: LEPVRSSYEATGSLQ*RWQHGLAHTLPSHQ
Trigger: TTGGTGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTGGCTTCGTAGGAAGATCGTACAGGCTCAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp TGGCTCAGCAACCGCAGCGTGGGCAGCTTAGAGACCTTGGTGAATTaGTGTACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGCC +
Preference number: 1 (lower is better)
Translates to: WLSNRSVGSLETLVN*CTMMCKQCRFMSSA
Trigger: GGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp TCTCCAAACAGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTaGTTGTCAGAGATGTGGGAGGCCAAGGAGTCTATGATGTCCAGC +
Preference number: 1 (lower is better)
Translates to: SPNRDPQMSAPSSAH*LSEMWEAKESMMSS
Trigger: GCTGGACATCATAGACTCCTTGGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCTGTTTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR GCA 90 bp GTCCACATCATAGCAGTGCAACTCATTGGGCAGTGTATTGTCCGCTaGACCCCCAAACACATAGAGATGGCGGTCAAAGGCCACCATGGT +
Preference number: 1 (lower is better)
Translates to: VHIIAVQLIGQCIVR*TPKHIEMAVKGHHG
Trigger: ACCATGGTGGCCTTTGACCGCCATCTCTATGTGTTTGGGGGTGCAGCGGACAATACACTGCCCAATGAGTTGCACTGCTATGATGTGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp ACATTCTGCAGATCTACAGAGGCCTCGATGTACTGCCGACACAGCTaGTCAAGGCGACACAGCTGGAAGCTCAGCGCCAACTTATACACA +
Preference number: 1 (lower is better)
Translates to: TFCRSTEASMYCRHS*SRRHSWKLSANLYT
Trigger: TGTGTATAAGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTCTGTAGATCTGCAGAATGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp TGGTGTACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGCCTaGGTCTTGTCAGCCGCCTCCAGAATCTGCAGCACATTCTGCACT +
Preference number: 1 (lower is better)
Translates to: WCTMMCKQCRFMSSA*VLSAASRICSTFCT
Trigger: AGTGCAGAATGTGCTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp AGCGTGGGCAGCTTAGAGACCTTGGTGAATTGGTGTACAATGATGTaGAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTCTTGTCAGCC +
Preference number: 1 (lower is better)
Translates to: SVGSLETLVNWCTMM*KQCRFMSSACVLSA
Trigger: GGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp CCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTaGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATGTCAGCACC +
Preference number: 1 (lower is better)
Translates to: PTGVITLQVEMWPIG*VSSLSKQRSSDVST
Trigger: GGTGCTGACATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 90 bp CAACCTCCCAGGTCTGGAAGTCCACATCATAGCAGTGCAACTCATTaGGCAGTGTATTGTCCGCTGCACCCCCAAACACATAGAGATGGC +
Preference number: 1 (lower is better)
Translates to: QPPRSGSPHHSSATH*AVYCPLHPQTHRDG
Trigger: GCCATCTCTATGTGTTTGGGGGTGCAGCGGACAATACACTGCCCAATGAGTTGCACTGCTATGATGTGGACTTCCAGACCTGGGAGGTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp GGGCGGCTGCTGCTTCCGACGAACTATCTCTACAATCAGTGGGGATaGGAGGCGCTCAAACTCCTTCATCATGATCACCTGATTGAAGTG +
Preference number: 1 (lower is better)
Translates to: GRLLLPTNYLYNQWG*EALKLLHHDHLIEV
Trigger: CACTTCAATCAGGTGATCATGATGAAGGAGTTTGAGCGCCTCTCATCCCCACTGATTGTAGAGATAGTTCGTCGGAAGCAGCAGCCGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp GAATTGGTGTACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTaGCTGCGTCTTGTCAGCCGCCTCCAGAATCTGCAGCACATTCTG +
Preference number: 1 (lower is better)
Translates to: ELVYNDVQTVPLHVQ*LRLVSRLQNLQHIL
Trigger: CAGAATGTGCTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp AGCTTAGAGACCTTGGTGAATTGGTGTACAATGATGTGCAAACAGTaGCGCTTCATGTCCAGTGCCTGCGTCTTGTCAGCCGCCTCCAGA +
Preference number: 1 (lower is better)
Translates to: SLETLVNWCTMMCKQ*RFMSSACVLSAASR
Trigger: TCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp TACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTaGCCTGACTTGACTCGGCCTGATAGGCTTTCACAGAAGCAAGCA +
Preference number: 1 (lower is better)
Translates to: YRFMSQQARKSASRP*PDLTRPDRLSQKQA
Trigger: TGCTTGCTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 90 bp AGCCAGAAGTGCCAGTCATTCCTTCCCTCAGTCTTTCTGTTCACCTaGAAACAGCTGTCCTTGTTCTGGCCCTCACGGATGCTGTACCAA +
Preference number: 1 (lower is better)
Translates to: SQKCQSFLPSVFLFT*KQLSLFWPSRMLYQ
Trigger: TTGGTACAGCATCCGTGAGGGCCAGAACAAGGACAGCTGTTTCCAGGTGAACAGAAAGACTGAGGGAAGGAATGACTGGCACTTCTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp TTCTGTTCACCTGGAAACAGCTGTCCTTGTTCTGGCCCTCACGGATaGTGTACCAATACCTTATCTCCTCCCACATGCCCTGTATGTCCA +
Preference number: 1 (lower is better)
Translates to: FCSPGNSCPCSGPHG*CTNTLSPPTCPVCP
Trigger: TGGACATACAGGGCATGTGGGAGGAGATAAGGTATTGGTACAGCATCCGTGAGGGCCAGAACAAGGACAGCTGTTTCCAGGTGAACAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp CTTCCCTCAGTCTTTCTGTTCACCTGGAAACAGCTGTCCTTGTTCTaGCCCTCACGGATGCTGTACCAATACCTTATCTCCTCCCACATG +
Preference number: 1 (lower is better)
Translates to: LPSVFLFTWKQLSLF*PSRMLYQYLISSHM
Trigger: CATGTGGGAGGAGATAAGGTATTGGTACAGCATCCGTGAGGGCCAGAACAAGGACAGCTGTTTCCAGGTGAACAGAAAGACTGAGGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp TTCAAACTGGAAGAGGTTGTTAGTTATCTTGGCTCCACTCTGTCCTaGGAACACGAACATCTTATCCCGGCACACAGCCACAGGGAAGTT +
Preference number: 1 (lower is better)
Translates to: FKLEEVVSYLGSTLS*EHEHLIPAHSHREV
Trigger: AACTTCCCTGTGGCTGTGTGCCGGGATAAGATGTTCGTGTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 90 bp ATCAGTGGGGATGAGAGGCGCTCAAACTCCTTCATCATGATCACCTaGTTGAAGTGGGATTCCTTCACTATGAAGTTCAGGCAATGCTCC +
Preference number: 1 (lower is better)
Translates to: ISGDERRSNSFIMIT*LKWDSFTMKFRQCS
Trigger: GGAGCATTGCCTGAACTTCATAGTGAAGGAATCCCACTTCAATCAGGTGATCATGATGAAGGAGTTTGAGCGCCTCTCATCCCCACTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 90 bp GATAGGCTTTCACAGAAGCAAGCAAAATGGCTCCTGACAGAGAGGTaGCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGG +
Preference number: 1 (lower is better)
Translates to: DRLSQKQAKWLLTER*QLERSLLYLLFPVG
Trigger: CCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGGAGCCATTTTGCTTGCTTCTGTGAAAGCCTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR GCA 90 bp CTATCCAGTGTTATTGCCCTGCTCAAAGTTTCCCAAAGCCAGAAGTaGCAGTCATTCCTTCCCTCAGTCTTTCTGTTCACCTGGAAACAG +
Preference number: 1 (lower is better)
Translates to: LSSVIALLKVSQSQK*QSFLPSVFLFTWKQ
Trigger: CTGTTTCCAGGTGAACAGAAAGACTGAGGGAAGGAATGACTGGCACTTCTGGCTTTGGGAAACTTTGAGCAGGGCAATAACACTGGATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp TGCTCAGTAGGGATGCGTGTCCACGTCTTGTCTTTGAATTCAAACTaGAAGAGGTTGTTAGTTATCTTGGCTCCACTCTGTCCTGAGAAC +
Preference number: 1 (lower is better)
Translates to: CSVGMRVHVLSLNSN*KRLLVILAPLCPEN
Trigger: GTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGACACGCATCCCTACTGAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 90 bp CTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATaGCTGACATACATTGGATATCTGTACCTATCTGGAGGCCTCCTT +
Preference number: 1 (lower is better)
Translates to: LYSISGNKVTSQQRQ*LTYIGYLYLSGGLL
Trigger: AAGGAGGCCTCCAGATAGGTACAGATATCCAATGTATGTCAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp TCTGGGCCAGCCACTCTTGAGCCTGTACGATCTTCCTACGAAGCCACCGGCTCCATGACAGCGGCAGCATaGAAGAGCCTCCCGCTGGGC +
Preference number: 2 (lower is better)
Translates to: SGPATLEPVRSSYEATGSMTAAA*KSLPLG
Trigger: GCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCAT...GGAGCCGGTGGCTTCGTAGGAAGATCGTACAGGCTCAAGAGTGGCTGGCCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp GAACGGGCAGCTAGGATGGCTTTGTGGGCTGGCCGTGGCTGGCCATCTAGCAGTCCTCAGCCTCACGGATaGCCACACGTAACAGGGGTG +
Preference number: 2 (lower is better)
Translates to: ERAARMALWAGRGWPSSSPQPHG*PHVTGV
Trigger: CACCCCTGTTACGTGTGGCCATCCGTGAGGCTGAGG...ACTGCTAGATGGCCAGCCACGGCCAGCCCACAAAGCCATCCTAGCTGCCCGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR TCA 90 bp CTGTATGTCCAGCTCCCAGTCTCGTGCGACATATCCCTCCAGGCCCAGCTTTTGCCCGCTGGGCAGCTCTaGTGCCAGATGGACAGGCTG +
Preference number: 2 (lower is better)
Translates to: LYVQLPVSCDISLQAQLLPAGQL*CQMDRL
Trigger: CAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGG...CAAAAGCTGGGCCTGGAGGGATATGTCGCACGAGACTGGGAGCTGGACATACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp GCTTTTGGACTATCATGCCAGTGGCAAGGGTCAGTCAGTACAAGACCCAAAGTGCCGCTGTGGCGGGGGTaGGGAGCCCCGAAGCAGGTG +
Preference number: 2 (lower is better)
Translates to: AFGLSCQWQGSVSTRPKVPLWRG*GAPKQV
Trigger: CACCTGCTTCGGGGCTCCCCACCCCCGCCACAGCGG...CACTTTGGGTCTTGTACTGACTGACCCTTGCCACTGGCATGATAGTCCAAAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 90 bp AAGAGCCTCCCGCTGGGCAGCTCTGATGCCAGATGGACAGGCTGCTaGGCTGAAGTGGTGCCGAAGTCTAAGCCAAACACATCTCTGGAC +
Preference number: 2 (lower is better)
Translates to: KSLPLGSSDARWTGC*AEVVPKSKPNTSLD
Trigger: GTCCAGAGATGTGTTTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR GCA 90 bp CCTCGCCATAGTAGATGTAGCGTAGCATGGACTCGAAGGCCTGTCTGCTGGGAAGAGCCCCGAAGCAGGTaGTCAGTAGGGATGCGTGTC +
Preference number: 2 (lower is better)
Translates to: PRHSRCSVAWTRRPVCWEEPRSR*SVGMRV
Trigger: GACACGCATCCCTACTGAGCACCTGCTTCGGGGCTC...TTCCCAGCAGACAGGCCTTCGAGTCCATGCTACGCTACATCTACTATGGCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp AAGCTCGCTCAGGCATCTCGGCCCCACCAACCTCACTGTCAGAGCTGGGCTGGATGCTTGTCAGAGATGTaGGAGGCCAAGGAGTCTATG +
Preference number: 2 (lower is better)
Translates to: KLAQASRPHQPHCQSWAGCLSEM*EAKESM
Trigger: CATAGACTCCTTGGCCTCCCACATCTCTGACAAGCA...TCCAGCCCAGCTCTGACAGTGAGGTTGGTGGGGCCGAGATGCCTGAGCGAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR TCA 90 bp TGTACTGCCGACACAGCTGCTCAAGGCGACACAGCTGGAAGCTCAGCGCCAACTACATGGCATCAGAGATaGCAGCGGCAGCATGGAAGA +
Preference number: 2 (lower is better)
Translates to: CTADTAAQGDTAGSSAPTTWHQR*QRQHGR
Trigger: TCTTCCATGCTGCCGCTGTCATCTCTGATGCCATGT...AGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGAGCAGCTGTGTCGGCAGTACA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp CACCTGAGTGGGTCACAGAGCCACCCTTACCTCAAGGGACTGGCAGGTAAGTGGGCTGCTTGGCTGAAGTaGTGCCGAAGTCTAAGCCAA +
Preference number: 2 (lower is better)
Translates to: HLSGSQSHPYLKGLAGKWAAWLK*CRSLSQ
Trigger: TTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGC...CCACTTACCTGCCAGTCCCTTGAGGTAAGGGTGGCTCTGTGACCCACTCAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR GCA 90 bp TCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATGTCCAGCAGCAGCTaGTGGCTCAGCAACCGCAGC +
Preference number: 2 (lower is better)
Translates to: SAGGDVANWLGVFTLQTEMSSSS*WLSNRS
Trigger: GCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGACAT...CTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp TCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGAACGGGCAGCTAGGATaGCTTTGTGGGCTGGCCGTG +
Preference number: 2 (lower is better)
Translates to: SAGGDVANWLGVFTLQTENGQLG*LCGLAV
Trigger: CACGGCCAGCCCACAAAGCCATCCTAGCTGCCCGTT...CTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 90 bp CCTACGAAGCCACCGGCTCCTTGCAGTGACGATGGCAACATGGCCTaGCACACACTCTTCCTTCTCACCAAGCACAAACTCCACATCACA +
Preference number: 2 (lower is better)
Translates to: PTKPPAPCSDDGNMA*HTLFLLTKHKLHIT
Trigger: TGTGATGTGGAGTTTGTGCTTGGTGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTGGCTTCGTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 90 bp CTGGCTCAGCAACCGCAGCGTGGGCAGCTTAGAGACCTTGGTGAATaGGTGTACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGC +
Preference number: 2 (lower is better)
Translates to: LAQQPQRGQLRDLGE*VYNDVQTVPLHVQC
Trigger: GCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR GCA 90 bp CACTTCCCTATACTCAGGACAGGAAGAGAGGTTCCCTACCAATGTCCACAGGCTGAGGCCTCGATGTACTaGCGACACAGCTGCTCAAGG +
Preference number: 2 (lower is better)
Translates to: HFPILRTGREVPYQCPQAEASMY*RHSCSR
Trigger: CCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTC...AGCCTGTGGACATTGGTAGGGAACCTCTCTTCCTGTCCTGAGTATAGGGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp TCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTGATAGGCTTTCACAGAAGCAGAAGCAAGCAAAATaGCTCCTGACAGAGAGGTGC +
Preference number: 2 (lower is better)
Translates to: SASRPWPDLTRPDRLSQKQKQAK*LLTERC
Trigger: GCACCTCTCTGTCAGGAGCCATTTTGCTTGCTTCTG...CTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp TCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTGATAGGCTTTCACAGAAGTGCTTGTCAGAGATGTaGGAGGCCAAGGAGTCTATG +
Preference number: 2 (lower is better)
Translates to: SASRPWPDLTRPDRLSQKCLSEM*EAKESM
Trigger: CATAGACTCCTTGGCCTCCCACATCTCTGACAAGCA...CTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp AATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTCTTGTCAGCCGCAGCTCTGATGCCAGATaGACAGGCTGCTTGGCTGAA +
Preference number: 2 (lower is better)
Translates to: NDVQTVPLHVQCLRLVSRSSDAR*TGCLAE
Trigger: TTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCT...GCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 90 bp CCCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTaGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATGTCAGCAC +
Preference number: 2 (lower is better)
Translates to: PHRCDHSAGGDVANW*GVFTLQTEILRCQH
Trigger: GTGCTGACATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CAA 90 bp ACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTCTaGTCAGCCGCCTCCAGAATCTGCAGCACATTCTGCACTGTGACA +
Preference number: 2 (lower is better)
Translates to: TMMCKQCRFMSSACV*SAASRICSTFCTVT
Trigger: TGTCACAGTGCAGAATGTGCTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR TCA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAAGGCCAAGGAGTCTATaGTGTCCAGCAGCAGCTGCT +
Preference number: 2 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNRRPRSL*CPAAAA
Trigger: AGCAGCTGCTGCTGGACATCATAGACTCCTTGGCCT...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR GCA 90 bp TCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGCCCAGCTCTGCACACTaGTTGTCAGAGATGTGGGAG +
Preference number: 2 (lower is better)
Translates to: SAGGDVANWLGVFTLQTEPSSAH*LSEMWE
Trigger: CTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGG...CTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR GCA 90 bp GTTTTGCTTGCAGTAAGCCTGCAGTCGGTTATTGTAGAAGCCGTAATAGTACGGGTGCGAGGGGGCGGCTaGTGCTTCCGACGAACTATC +
Preference number: 2 (lower is better)
Translates to: VLLAVSLQSVIVEAVIVRVRGGG*CFRRTI
Trigger: GATAGTTCGTCGGAAGCAGCAGCCGCCCCCTCGCAC...CCGTACTATTACGGCTTCTACAATAACCGACTGCAGGCTTACTGCAAGCAAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp CATCACAGAACTGGCGGCCCTCCCATAGGCGCCCATAATCTTCGTGCAGTGTGCATGTGGCCAATTGGTTaGGTGTCTTCACTCTCCAAA +
Preference number: 2 (lower is better)
Translates to: HHRTGGPPIGAHNLRAVCMWPIG*VSSLSK
Trigger: TTTGGAGAGTGAAGACACCCAACCAATTGGCCACAT...GCACACTGCACGAAGATTATGGGCGCCTATGGGAGGGCCGCCAGTTCTGTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp GCTTTTGGACTATCATGCCAGTGGCAAGGGTCAGTCAGTACAAGACCCAAAGTGCAATGCTCCTTGAGCTaGCCCAGCTGTAGCCTGGCA +
Preference number: 2 (lower is better)
Translates to: AFGLSCQWQGSVSTRPKVQCSLS*PSCSLA
Trigger: TGCCAGGCTACAGCTGGGCCAGCTCAAGGAGCATTG...CACTTTGGGTCTTGTACTGACTGACCCTTGCCACTGGCATGATAGTCCAAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 90 bp ATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTaGACTCGGCCTGATAGGCTTTCACAGAAGCAAGCAAAATGGCTC +
Preference number: 2 (lower is better)
Translates to: MSQQARKSASRPWPD*TRPDRLSQKQAKWL
Trigger: GAGCCATTTTGCTTGCTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CAA 90 bp AATGCATGGGTCACCCTCAAGAGTGGGTTTCATGGGTACCCAGGCTaGCTGGCACATAGCTTACTATTAAAAGCCCCTGTCCTTCCCAGT +
Preference number: 2 (lower is better)
Translates to: NAWVTLKSGFHGYPG*LAHSLLLKAPVLPS
Trigger: ACTGGGAAGGACAGGGGCTTTTAATAGTAAGCTATGTGCCAGCAAGCCTGGGTACCCATGAAACCCACTCTTGAGGGTGACCCATGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp AAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCATGAAGTGCAGGCTTTaGGGGGTCCCTGTACACCTC +
Preference number: 2 (lower is better)
Translates to: KCIPSYRFMSQQARKSASMKCRL*GVPVHL
Trigger: GAGGTGTACAGGGACCCCCCAAAGCCTGCACTTCAT...GCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CAA 90 bp TCATTCCTTCCCTCAGTCTTTCTGTTCACCTGGAAACAGCTGTCCTaGTTCTGGCCCTCACGGATGCTGTACCAATACCTTATCTCCTCC +
Preference number: 2 (lower is better)
Translates to: SFLPSVFLFTWKQLS*FWPSRMLYQYLISS
Trigger: GGAGGAGATAAGGTATTGGTACAGCATCCGTGAGGGCCAGAACAAGGACAGCTGTTTCCAGGTGAACAGAAAGACTGAGGGAAGGAATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR TCA 90 bp CACTTCCCTATACTCAGGACAGGAAGAGAGGTTCCCTACCAATGTCCACAGGCTGGGATTCCTTCACTATaGAGTTCAGGCAATGCTCCT +
Preference number: 2 (lower is better)
Translates to: HFPILRTGREVPYQCPQAGIPSL*SSGNAP
Trigger: AGGAGCATTGCCTGAACTTCATAGTGAAGGAATCCC...AGCCTGTGGACATTGGTAGGGAACCTCTCTTCCTGTCCTGAGTATAGGGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR GCA 90 bp CGCCAACTTATACACATCCATGATGAGCAGCACGTCTTCTACATGGCCTTTCCGCAGTGTATTGTCCGCTaGACCCCCAAACACATAGAG +
Preference number: 2 (lower is better)
Translates to: RQLIHIHDEQHVFYMAFPQCIVR*TPKHIE
Trigger: CTCTATGTGTTTGGGGGTGCAGCGGACAATACACTG...CGGAAAGGCCATGTAGAAGACGTGCTGCTCATCATGGATGTGTATAAGTTGGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp GTTTTGCTTGCAGTAAGCCTGCAGTCGGTTATTGTAGAAGCCGTAATAGTACGGATGAAGTGCAGGCTTTaGGGGGTCCCTGTACACCTC +
Preference number: 2 (lower is better)
Translates to: VLLAVSLQSVIVEAVIVRMKCRL*GVPVHL
Trigger: GAGGTGTACAGGGACCCCCCAAAGCCTGCACTTCAT...CCGTACTATTACGGCTTCTACAATAACCGACTGCAGGCTTACTGCAAGCAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR TCA 90 bp CGACACAGCTGGAAGCTCAGCGCCAACTTATACACATCCATGATGAGCAGCACGTCCACGTCTTGTCTTTaGATTCAAACTGGAAGAGGT +
Preference number: 2 (lower is better)
Translates to: RHSWKLSANLYTSMMSSTSTSCL*IQTGRG
Trigger: ACCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGA...CGTGCTGCTCATCATGGATGTGTATAAGTTGGCGCTGAGCTTCCAGCTGTGTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGTACATGGCCTTTCCGTaGGTACTTGATCTTGTCTGT +
Preference number: 2 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQYMAFP*VLDLVC
Trigger: ACAGACAAGATCAAGTACCCACGGAAAGGCCATGTA...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CCA 90 bp CCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATGTCAGCACCATGTGGCCAATTGGTTaGGTGTCTTCACTCTCCAAA +
Preference number: 2 (lower is better)
Translates to: PIGWVSSLSKQRSSDVSTMWPIG*VSSLSK
Trigger: TTTGGAGAGTGAAGACACCCAACCAATTGGCCACAT...GGTGCTGACATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CAA 90 bp GGGATGCGTGTCCACGTCTTGTCTTTGAATTCAAACTGGAAGAGGTaGTTAGTTATCTTGGCTCCACTCTGTCCTGAGAACACGAACATC +
Preference number: 2 (lower is better)
Translates to: GMRVHVLSLNSNWKR*LVILAPLCPENTNI
Trigger: GATGTTCGTGTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGACACGCATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 90 bp CACGTCTTGTCTTTGAATTCAAACTGGAAGAGGTTGTTAGTTATCTaGGCTCCACTCTGTCCTGAGAACACGAACATCTTATCCCGGCAC +
Preference number: 2 (lower is better)
Translates to: HVLSLNSNWKRLLVI*APLCPENTNILSRH
Trigger: GTGCCGGGATAAGATGTTCGTGTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAATTCAAAGACAAGACGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR TCA 90 bp GTTTTGCTTGCAGTAAGCCTGCAGTCGGTTATTGTAGAAGCCGTAATAGTACGGTTCATCATGATCACCTaGTTGAAGTGGGATTCCTTC +
Preference number: 2 (lower is better)
Translates to: VLLAVSLQSVIVEAVIVRFIMIT*LKWDSF
Trigger: GAAGGAATCCCACTTCAATCAGGTGATCATGATGAA...CCGTACTATTACGGCTTCTACAATAACCGACTGCAGGCTTACTGCAAGCAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp CACCATGGTGTGTCCGTAGCGCCGCTGTGGCGGGGGTaGGGAGCCCCGAAGCAGGTGCTCAGTAGGGATGCG +
Preference number: 3 (lower is better)
Translates to: HHGVSVAPLWRG*GAPKQVLSRDA
Trigger: CGCATCCCTACTGAGCACCTGCTTCGGGGCTCCCCACCCCCGCCACAGCGGCGCTACGGACACACCATGGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp CCCCAAACACATAGAGATGGCGGTCAAAGGCCACCATaGTGTGTCCGTAGCGCCGCTGTGGCGGGGGTGGGG +
Preference number: 3 (lower is better)
Translates to: PQTHRDGGQRPP*CVRSAAVAGVG
Trigger: CCCCACCCCCGCCACAGCGGCGCTACGGACACACCATGGTGGCCTTTGACCGCCATCTCTATGTGTTTGGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 72 bp GACAGGAAGAGAGGTTCCCTACCAATGTCCACAGGCTaGTCGGAGGGTGTGCGAGGGGGCGGCTGCTGCTTC +
Preference number: 3 (lower is better)
Translates to: DRKRGSLPMSTG*SEGVRGGGCCF
Trigger: GAAGCAGCAGCCGCCCCCTCGCACACCCTCCGATCAGCCTGTGGACATTGGTAGGGAACCTCTCTTCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 72 bp TGTGGGCTGGCCGTGGCTGGCCATCTAGCAGTAGTGTaGTGTCACAGAACTCCGAGCCTGCTCCCTCCAGGT +
Preference number: 3 (lower is better)
Translates to: CGLAVAGHLAVV*CHRTPSLLPPG
Trigger: ACCTGGAGGGAGCAGGCTCGGAGTTCTGTGACATCACACTACTGCTAGATGGCCAGCCACGGCCAGCCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp TGGGAGGCCAAGGAGTCTATGATGTCCAGCAGCAGCTaGTGGCTCAGCAACCGCAGCGTGGGCAGCTTAGAG +
Preference number: 3 (lower is better)
Translates to: WEAKESMMSSSS*WLSNRSVGSLE
Trigger: CTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGACATCATAGACTCCTTGGCCTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp CAGGCATCTCGGCCCCACCAACCTCACTGTCAGAGCTaGGCTGGACAACCTCCCAGGTCTGGAAGTCCACAT +
Preference number: 3 (lower is better)
Translates to: QASRPHQPHCQS*AGQPPRSGSPH
Trigger: ATGTGGACTTCCAGACCTGGGAGGTTGTCCAGCCCAGCTCTGACAGTGAGGTTGGTGGGGCCGAGATGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp CTCCCGCTGGGCAGCTCTGATGCCAGATGGACAGGCTaGTTGGCTGAAGTGGTGCCGAAGTCTAAGCCAAAC +
Preference number: 3 (lower is better)
Translates to: LPLGSSDARWTG*LAEVVPKSKPN
Trigger: GTTTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp AGATCTACAGAGGCCTCGATGTACTGCCGACACAGCTaGTCAAGGCGACACAGCTGGAAGCTCAGCGCCAAC +
Preference number: 3 (lower is better)
Translates to: RSTEASMYCRHS*SRRHSWKLSAN
Trigger: GTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTCTGTAGATCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp CTTACTATTAAAAGCCCCTGTCCTTCCCAGTCCCTGTaGCAGGGAGCACCTGAGTGGGTCACAGAGCCACCC +
Preference number: 3 (lower is better)
Translates to: LTIKSPCPSQSL*QGAPEWVTEPP
Trigger: GGGTGGCTCTGTGACCCACTCAGGTGCTCCCTGGCACAGGGACTGGGAAGGACAGGGGCTTTTAATAGTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp CTGCTGGGAACCATCTCCCCAATGGAGATGTTCACCTaGCCGTCCTCTGGCATGAACGACCGAAACATGGCC +
Preference number: 3 (lower is better)
Translates to: LLGTISPMEMFT*PSSGMNDRNMA
Trigger: GGCCATGTTTCGGTCGTTCATGCCAGAGGACGGGCAGGTGAACATCTCCATTGGGGAGATGGTTCCCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp CGCTGGGCAGCTCTGATGCCAGATGGACAGGCTGCTTaGCTGAAGTGGTGCCGAAGTCTAAGCCAAACACAT +
Preference number: 3 (lower is better)
Translates to: RWAALMPDGQAA*LKWCRSLSQTH
Trigger: ATGTGTTTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp AAGATGTACATGGCATCAGAGATGACAGCGGCAGCATaGAAGAGCCTCCCGCTGGGCAGCTCTGATGCCAGA +
Preference number: 3 (lower is better)
Translates to: KMYMASEMTAAA*KSLPLGSSDAR
Trigger: TCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCATCTCTGATGCCATGTACATCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp CATTGGGCAGTGTATTGTCCGCTGCACCCCCAAACACATAGAGATGGCGGTCAAAGCTCTGCACACTGCTaGTCAGAGATGTGGGAGGCC +
Preference number: 3 (lower is better)
Translates to: HWAVYCPLHPQTHRDGGQSSAHC*SEMWEA
Trigger: GGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCT...TTGACCGCCATCTCTATGTGTTTGGGGGTGCAGCGGACAATACACTGCCCAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 72 bp GTACGATCTTCCTACGAAGCCACCGGCTCCTTGCAGTaGCGATGGCAACATGGCCTTGCACACACTCTTCCT +
Preference number: 3 (lower is better)
Translates to: VRSSYEATGSLQ*RWQHGLAHTLP
Trigger: AGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTGGCTTCGTAGGAAGATCGTAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp CACCGGCTCCTTGCAGTGACGATGGCAACATGGCCTTaGACACACTCTTCCTTCTCACCAAGCACAAACTCC +
Preference number: 3 (lower is better)
Translates to: HRLLAVTMATWP*THSSFSPSTNS
Trigger: GGAGTTTGTGCTTGGTGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp CAGTCTCGTGCGACATATCCCTCCAGGCCCAGCTTTTaGACTATCATGCCAGTGGCAAGGGTCAGTCAGTAC +
Preference number: 3 (lower is better)
Translates to: QSRATYPSRPSF*TIMPVARVSQY
Trigger: GTACTGACTGACCCTTGCCACTGGCATGATAGTCCAAAAGCTGGGCCTGGAGGGATATGTCGCACGAGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp GCTTCATGTCCAGTGCCTGCGTCTTGTCAGCCGCCTCCAGAATCTGCAGCACATGATGTGGCCAATTGGTaGGGTGTCTTCACTCTCCAA +
Preference number: 3 (lower is better)
Translates to: ASCPVPASCQPPPESAAHDVANW*GVFTLQ
Trigger: TTGGAGAGTGAAGACACCCAACCAATTGGCCACATC...ATGTGCTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp CTAGCCAACCAGAGAATGCATGGGTCACCCTCAAGAGTGGGTTTCATGGGTACCTCCCCACTGCGAATGTaGTTGTCTACAGTGCCCCCA +
Preference number: 3 (lower is better)
Translates to: LANQRMHGSPSRVGFMGTSPLRM*LSTVPP
Trigger: TGGGGGCACTGTAGACAACAACATTCGCAGTGGGGA...GGTACCCATGAAACCCACTCTTGAGGGTGACCCATGCATTCTCTGGTTGGCTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp AGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTaGTTGTCAGAGATGTGGGAGGCCAAGGAGTCTATG +
Preference number: 3 (lower is better)
Translates to: RDPQMSAPSSAH*LSEMWEAKESM
Trigger: CATAGACTCCTTGGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR GCA 72 bp AGAACATTCTGCAGATCTACAGAGGCCTCGATGTACTaGCGACACAGCTGCTCAAGGCGACACAGCTGGAAG +
Preference number: 3 (lower is better)
Translates to: RTFCRSTEASMY*RHSCSRRHSWK
Trigger: CTTCCAGCTGTGTCGCCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTCTGTAGATCTGCAGAATGTTCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp TACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTaGCTGCGTCTTGTCAGCCGCCTCCAGAATCTGCAG +
Preference number: 3 (lower is better)
Translates to: YNDVQTVPLHVQ*LRLVSRLQNLQ
Trigger: CTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp GACCCCACAGGTGTGATCACTCTGCAGGTGGAGATGTaGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAG +
Preference number: 3 (lower is better)
Translates to: DPTGVITLQVEM*PIGWVSSLSKQ
Trigger: CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp ATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTaGCCTGACTTGACTCGGCCTGATAGGCTTTCACAG +
Preference number: 3 (lower is better)
Translates to: MSQQARKSASRP*PDLTRPDRLSQ
Trigger: CTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp TCCTTCACTATGAAGTTCAGGCAATGCTCCTTGAGCTaGCCCAGCTGTAGCCTGGCAGCACTCTCACACACA +
Preference number: 3 (lower is better)
Translates to: SFTMKFRQCSLS*PSCSLAALSHT
Trigger: TGTGTGTGAGAGTGCTGCCAGGCTACAGCTGGGCCAGCTCAAGGAGCATTGCCTGAACTTCATAGTGAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp ATCCCTCCAGGCCCAGCTTTTGGACTATCATGCCAGTaGCAAGGGTCAGTCAGTACAAGACCCAAAGTGAGC +
Preference number: 3 (lower is better)
Translates to: IPPGPAFGLSCQ*QGSVSTRPKVS
Trigger: GCTCACTTTGGGTCTTGTACTGACTGACCCTTGCCACTGGCATGATAGTCCAAAAGCTGGGCCTGGAGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp CATCTCCCCAATGGAGATGTTCACCTGCCCGTCCTCTaGCATGAACGACCGAAACATGGCCTCAAAGTAGCT +
Preference number: 3 (lower is better)
Translates to: HLPNGDVHLPVL*HERPKHGLKVA
Trigger: AGCTACTTTGAGGCCATGTTTCGGTCGTTCATGCCAGAGGACGGGCAGGTGAACATCTCCATTGGGGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 72 bp AGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTaGCTCGGCCTGATAGGCTTTCACAGAAGCAAGCAA +
Preference number: 3 (lower is better)
Translates to: RLENLPADPGLT*LGLIGFHRSKQ
Trigger: TTGCTTGCTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR TCA 72 bp GCCAGTGGCAAGGGTCAGTCAGTACAAGACCCAAAGTaGGCTGGGGCAGTGAAGGTGTTAGGAATCTCTAGT +
Preference number: 3 (lower is better)
Translates to: ASGKGQSVQDPK*AGAVKVLGISS
Trigger: ACTAGAGATTCCTAACACCTTCACTGCCCCAGCTCACTTTGGGTCTTGTACTGACTGACCCTTGCCACTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp ATAGCAGTGCAACTCATTGGGCAGTGTATTGTCCGCTaGACCCCCAAACACATAGAGATGGCGGTCAAAGGC +
Preference number: 3 (lower is better)
Translates to: IAVQLIGQCIVR*TPKHIEMAVKG
Trigger: GCCTTTGACCGCCATCTCTATGTGTTTGGGGGTGCAGCGGACAATACACTGCCCAATGAGTTGCACTGCTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp AGTAGATGTAGCGTAGCATGGACTCGAAGGCCTGTCTaGTGGGAACCATCTCCCCAATGGAGATGTTCACCT +
Preference number: 3 (lower is better)
Translates to: SRCSVAWTRRPV*WEPSPQWRCSP
Trigger: AGGTGAACATCTCCATTGGGGAGATGGTTCCCAGCAGACAGGCCTTCGAGTCCATGCTACGCTACATCTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp ATGTACTGCCGACACAGCTGCTCAAGGCGACACAGCTaGAAGCTCAGCGCCAACTTATACACATCCATGATG +
Preference number: 3 (lower is better)
Translates to: MYCRHSCSRRHS*KLSANLYTSMM
Trigger: CATCATGGATGTGTATAAGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGAGCAGCTGTGTCGGCAGTACAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp GCTTCATGTCCAGTGCCTGCGTCTTGTCAGCCGCCTCCAGAATCTGCAGCACATGTCCACGTCTTGTCTTaGAATTCAAACTGGAAGAGG +
Preference number: 3 (lower is better)
Translates to: ASCPVPASCQPPPESAAHVHVLS*NSNWKR
Trigger: CCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGAC...ATGTGCTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATGTGGCCAATTGGTaGGGTGTCTTCACTCTCCAA +
Preference number: 3 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNRDVANW*GVFTLQ
Trigger: TTGGAGAGTGAAGACACCCAACCAATTGGCCACATC...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp CGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGAGGAGTTTGCTTTATTaGCTATTCCCTGTGGGGCCT +
Preference number: 3 (lower is better)
Translates to: RFMSQQARKSASRPWPDLRSLLY*LFPVGP
Trigger: AGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCT...CAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp ACTCGGCCTGATAGGCTTTCACAGAAGCAAGCAAAATaGCTCCTGACAGAGAGGTGCCAGCTAGAAAGGAGT +
Preference number: 3 (lower is better)
Translates to: TRPDRLSQKQAK*LLTERCQLERS
Trigger: ACTCCTTTCTAGCTGGCACCTCTCTGTCAGGAGCCATTTTGCTTGCTTCTGTGAAAGCCTATCAGGCCGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp AGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTaGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTC +
Preference number: 3 (lower is better)
Translates to: RCDHSAGGDVAN*LGVFTLQTEIL
Trigger: GAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp AGGTCTGGAAGTCCACATCATAGCAGTGCAACTCATTaGGCAGTGTATTGTCCGCTGCACCCCCAAACACAT +
Preference number: 3 (lower is better)
Translates to: RSGSPHHSSATH*AVYCPLHPQTH
Trigger: ATGTGTTTGGGGGTGCAGCGGACAATACACTGCCCAATGAGTTGCACTGCTATGATGTGGACTTCCAGACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp AACCGCAGCGTGGGCAGCTTAGAGACCTTGGTGAATTaGTGTACAATGATGTGCAAACAGTGCCGCTTCATG +
Preference number: 3 (lower is better)
Translates to: NRSVGSLETLVN*CTMMCKQCRFM
Trigger: CATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTCAGCTAGAAAGGAGTTaGCTTTATTTGCTATTCCCT +
Preference number: 3 (lower is better)
Translates to: SQQARKSASRPWPDLTRPQLERS*LYLLFP
Trigger: AGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTG...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR TCA 72 bp GAAGAGGTTGTTAGTTATCTTGGCTCCACTCTGTCCTaGGAACACGAACATCTTATCCCGGCACACAGCCAC +
Preference number: 3 (lower is better)
Translates to: EEVVSYLGSTLS*EHEHLIPAHSH
Trigger: GTGGCTGTGTGCCGGGATAAGATGTTCGTGTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 72 bp CTGCTTCCGACGAACTATCTCTACAATCAGTGGGGATaGGAGGCGCTCAAACTCCTTCATCATGATCACCTG +
Preference number: 3 (lower is better)
Translates to: LLPTNYLYNQWG*EALKLLHHDHL
Trigger: CAGGTGATCATGATGAAGGAGTTTGAGCGCCTCTCATCCCCACTGATTGTAGAGATAGTTCGTCGGAAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp GTCTTGTCAGCCGCCTCCAGAATCTGCAGCACATTCTaGACTGTGACATTCATCTCTAGGTTTTGCTTGCAG +
Preference number: 3 (lower is better)
Translates to: VLSAASRICSTF*TVTFISRFCLQ
Trigger: CTGCAAGCAAAACCTAGAGATGAATGTCACAGTGCAGAATGTGCTGCAGATTCTGGAGGCGGCTGACAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp AGCTTAGAGACCTTGGTGAATTGGTGTACAATGATGTaGAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTC +
Preference number: 3 (lower is better)
Translates to: SLETLVNWCTMM*KQCRFMSSACV
Trigger: GACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp GTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTaGGTGTCTTCACTCTCCAAACAGAGATCCTCAGAT +
Preference number: 3 (lower is better)
Translates to: VITLQVEMWPIG*VSSLSKQRSSD
Trigger: ATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp GTCTTTCTGTTCACCTGGAAACAGCTGTCCTTGTTCTaGCCCTCACGGATGCTGTACCAATACCTTATCTCC +
Preference number: 3 (lower is better)
Translates to: VFLFTWKQLSLF*PSRMLYQYLIS
Trigger: GGAGATAAGGTATTGGTACAGCATCCGTGAGGGCCAGAACAAGGACAGCTGTTTCCAGGTGAACAGAAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR GCA 72 bp TTTGTTTTCTGGCCTAAGGGCCCTATCCAGTGTTATTaGCCTGCTCAAAGTTTCCCAAAGCCAGAAGTGCCA +
Preference number: 3 (lower is better)
Translates to: FVFWPKGPIQCY*PAQSFPKPEVP
Trigger: TGGCACTTCTGGCTTTGGGAAACTTTGAGCAGGGCAATAACACTGGATAGGGCCCTTAGGCCAGAAAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp TGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCATGCGTGTCCACGTCTaGTCTTTGAATTCAAACTGG +
Preference number: 3 (lower is better)
Translates to: CQLERSLLYLLFPVGPVSMRVHV*SLNSNW
Trigger: CCAGTTTGAATTCAAAGACAAGACGTGGACACGCAT...GGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGCAGCTAGAAAGGAGTTaGCTTTATTTGCTATTCCCT +
Preference number: 3 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQQLERS*LYLLFP
Trigger: AGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTG...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCTCATTGGGCAGTGTATaGTCCGCTGCACCCCCAAAC +
Preference number: 3 (lower is better)
Translates to: LIGFIFFTVSRETKSQASSLGSV*SAAPPN
Trigger: GTTTGGGGGTGCAGCGGACAATACACTGCCCAATGA...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp ATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCTGAGGTTGTTAGTTATCTaGGCTCCACTCTGTCCTGAG +
Preference number: 3 (lower is better)
Translates to: ILYSISGNKVTSQQRQWLRLLVI*APLCPE
Trigger: CTCAGGACAGAGTGGAGCCAAGATAACTAACAACCT...CAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR TCA 72 bp GATGAGAGGCGCTCAAACTCCTTCATCATGATCACCTaGTTGAAGTGGGATTCCTTCACTATGAAGTTCAGG +
Preference number: 3 (lower is better)
Translates to: DERRSNSFIMIT*LKWDSFTMKFR
Trigger: CCTGAACTTCATAGTGAAGGAATCCCACTTCAATCAGGTGATCATGATGAAGGAGTTTGAGCGCCTCTCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CCA 72 bp GGGATGCGTGTCCACGTCTTGTCTTTGAATTCAAACTaGAAGAGGTTGTTAGTTATCTTGGCTCCACTCTGT +
Preference number: 3 (lower is better)
Translates to: GMRVHVLSLNSN*KRLLVILAPLC
Trigger: ACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGACACGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp AGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGAGATGTGGCCAATTGGTaGGGTGTCTTCACTCTCCAA +
Preference number: 3 (lower is better)
Translates to: RLYILYSISGNKVTSQQRDVANW*GVFTLQ
Trigger: TTGGAGAGTGAAGACACCCAACCAATTGGCCACATC...TCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CCA 72 bp ATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATaGCTGACATACATTGGATATCTGTACCTATCTGGA +
Preference number: 3 (lower is better)
Translates to: ISGNKVTSQQRQ*LTYIGYLYLSG
Trigger: TCCAGATAGGTACAGATATCCAATGTATGTCAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATAGGAGTTTGCTTTATTaGCTATTCCCTGTGGGGCCT +
Preference number: 3 (lower is better)
Translates to: FIFFTVSRETKSQASRDNRSLLY*LFPVGP
Trigger: AGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCT...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR-3UTR CAA 90 bp AGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAGCTAGAAAGGAGTTaGCTTTATTTGCTATTCCCT +
Preference number: 3 (lower is better)
Translates to: RLYILYSISGNKVTSQQRQLERS*LYLLFP
Trigger: AGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTG...TCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp GAGATGGCGGTCAAAGGCCACCATGGTGTGTCCGTAGCGCCGCTGTGGCGGGGGTGTAGCCCCATGGGCTaGCCTGGCAACAGGCAACCT +
Preference number: 4 (lower is better)
Translates to: EMAVKGHHGVSVAPLWRGCSPMG*PGNRQP
Trigger: AGGTTGCCTGTTGCCAGGTCAGCCCATGGGGCTACA...CCCCCGCCACAGCGGCGCTACGGACACACCATGGTGGCCTTTGACCGCCATCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp GAGATGGCGGTCAAAGGCCACCATGGTGTGTCCGTAGCGCCGCTGTGGCGGGGGGTACTCGACACTGTCTaGGCAGCTGTGGTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: EMAVKGHHGVSVAPLWRGVLDTV*AAVVKV
Trigger: GACTTTGACCACAGCTGCTCAGACAGTGTCGAGTAC...CCCCCGCCACAGCGGCGCTACGGACACACCATGGTGGCCTTTGACCGCCATCTC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp CCTCAGATGTCAGCACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGGAGGCCACAATGGCCAAGAGGTaGCCAGGCCTGCTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: PQMSAPSSAHCLSEMWEATMAKR*PGLLGR
Trigger: TCTCCCCAGCAGGCCTGGGCACCTCTTGGCCATTGT...GGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp GAGGTTCCCTACCAATGTCCACAGGCTGATCGGAGGGTGTGCGAGGGGGCGGCTGTGAGCTCTCGGTCTTaGAGGCCAATTGTCCACATG +
Preference number: 4 (lower is better)
Translates to: EVPYQCPQADRRVCEGAAVSSRS*RPIVHM
Trigger: CATGTGGACAATTGGCCTCCAAGACCGAGAGCTCAC...AGCCGCCCCCTCGCACACCCTCCGATCAGCCTGTGGACATTGGTAGGGAACCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTCCTGCTGGGGAGAGCTaGGACCTAGAACACTGGGGC +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPPAGES*DLEHWG
Trigger: GCCCCAGTGTTCTAGGTCCCAGCTCTCCCCAGCAGG...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTGGTGCCCAGGCCTGCTaGGGAGAGCTGGGACCTAGA +
Preference number: 4 (lower is better)
Translates to: PTGVITLQVEMWPIGWVSGAQAC*GELGPR
Trigger: TCTAGGTCCCAGCTCTCCCCAGCAGGCCTGGGCACC...AGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR TCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTTGTAGCCCCATGGGCTaGCCTGGCAACAGGCAACCT +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPCSPMG*PGNRQP
Trigger: AGGTTGCCTGTTGCCAGGTCAGCCCATGGGGCTACA...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTCCCCATGGGCTGACCTaGCAACAGGCAACCTCCCTT +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPPHGLT*QQATSL
Trigger: AAGGGAGGTTGCCTGTTGCCAGGTCAGCCCATGGGG...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp TCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTGATAGGCTTTCACAGAAGCTGTCAGAGCTGGGCTaGACAACCTCCCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: SASRPWPDLTRPDRLSQKLSELG*TTSQVW
Trigger: CCAGACCTGGGAGGTTGTCCAGCCCAGCTCTGACAG...CTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp CTCTGCACACTGCTTGTCAGAGATGTGGGAGGCCAAGGAGTCTATGATGTCCAGGGCCAGGGGCCTCCTTaGGAGCTAGGGCCCCATCTT +
Preference number: 4 (lower is better)
Translates to: LCTLLVRDVGGQGVYDVQGQGPP*ELGPHL
Trigger: AAGATGGGGCCCTAGCTCCCAAGGAGGCCCCTGGCC...CTGGACATCATAGACTCCTTGGCCTCCCACATCTCTGACAAGCAGTGTGCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTGCCCTGCCCACAGCTaGGCCAGGGGCCTCCTTGGG +
Preference number: 4 (lower is better)
Translates to: CQLERSLLYLLFPVGPVSCPAHS*ARGLLG
Trigger: CCCAAGGAGGCCCCTGGCCCAGCTGTGGGCAGGGCA...GGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp TCAAATGGCCGGGCCTCAGCCTCACGGATGGCCACACGTAACAGGGGTGGCCGTGATGGCATCCTTATATaGCACGACTGTGTGCTTGCT +
Preference number: 4 (lower is better)
Translates to: SNGRASASRMATRNRGGRDGILI*HDCVLA
Trigger: AGCAAGCACACAGTCGTGGCATATAAGGATGCCATC...ACGGCCACCCCTGTTACGTGTGGCCATCCGTGAGGCTGAGGCCCGGCCATTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp CTTGACCCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGAGCCCCGAAGCAGGTaGTCAGTAGGGATGCGTGTC +
Preference number: 4 (lower is better)
Translates to: LDPTGVITLQVEMWPIGWEPRSR*SVGMRV
Trigger: GACACGCATCCCTACTGAGCACCTGCTTCGGGGCTC...CCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGGGTCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR GCA 90 bp CGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGGTGCGAGGGGGCGGCTaGTGCTTCCGACGAACTATC +
Preference number: 4 (lower is better)
Translates to: RFMSQQARKSASRPWPDLVRGGG*CFRRTI
Trigger: GATAGTTCGTCGGAAGCAGCAGCCGCCCCCTCGCAC...CAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGGCTAGGATGGCTTTGTaGGCTGGCCGTGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: RDPQMSAPSSAHCLSEMWARMAL*AGRGWP
Trigger: TGGCCAGCCACGGCCAGCCCACAAAGCCATCCTAGC...CCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGTCCAGCAGCAGCTGCTaGCTCAGCAACCGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: RFMSQQARKSASRPWPDLSSSSC*LSNRSV
Trigger: CACGCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGA...CAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR TCA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGACCAATGTCCACAGGCTaGTCGGAGGGTGTGCGAGGG +
Preference number: 4 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNRPMSTG*SEGVRG
Trigger: CCCTCGCACACCCTCCGATCAGCCTGTGGACATTGG...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR TCA 90 bp CTTCCTCTAGCTTCTGGGCCAGCCACTCTTGAGCCTGTACGATCTTCCTACGAAAGGGCCTCCAAGGCCTaGGGCTACACTATCCTCCTC +
Preference number: 4 (lower is better)
Translates to: LPLASGPATLEPVRSSYERASKA*GYTILL
Trigger: GAGGAGGATAGTGTAGCCTCAGGCCTTGGAGGCCCT...TTCGTAGGAAGATCGTACAGGCTCAAGAGTGGCTGGCCCAGAAGCTAGAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp TGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCGTGCGAGGGGGCGGCTaGTGCTTCCGACGAACTATC +
Preference number: 4 (lower is better)
Translates to: CDHSAGGDVANWLGVFTLVRGGG*CFRRTI
Trigger: GATAGTTCGTCGGAAGCAGCAGCCGCCCCCTCGCAC...GAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTGCCGCCTCCAGAATCTaGAGCACATTCTGCACTGTG +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPAASRI*STFCTV
Trigger: CACAGTGCAGAATGTGCTGCAGATTCTGGAGGCGGC...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp ACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGGAGGCCAAGGAGTCTATGATCCGCTTCATGTCCAGTaGCTGCGTCTTGTCAGCCGC +
Preference number: 4 (lower is better)
Translates to: TQLCTLLVRDVGGQGVYDPLHVQ*LRLVSR
Trigger: GCGGCTGACAAGACGCAGGCACTGGACATGAAGCGG...ATCATAGACTCCTTGGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGGCTTTGGGGATGACAGCGGCAGCATaGAAGAGCCTCCCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: LFAIPCGACVLNEVQALGMTAAA*KSLPLG
Trigger: GCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCAT...CCCCAAAGCCTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGTGCCCTGCCCACAGCTaGGCCAGGGGCCTCCTTGGG +
Preference number: 4 (lower is better)
Translates to: LERSLLYLLFPVGPVSSMCPAHS*ARGLLG
Trigger: CCCAAGGAGGCCCCTGGCCCAGCTGTGGGCAGGGCA...CATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGGCTTTGGGGGCTAGGATGGCTTTGTaGGCTGGCCGTGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: LFAIPCGACVLNEVQALGARMAL*AGRGWP
Trigger: TGGCCAGCCACGGCCAGCCCACAAAGCCATCCTAGC...CCCCAAAGCCTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCAACGGGCAGCTAGGATaGCTTTGTGGGCTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFNGQLG*LCGLAV
Trigger: CACGGCCAGCCCACAAAGCCATCCTAGCTGCCCGTT...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
3UTR CAA 72 bp TGCAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTCTaGTCAGCCGCCTCCAGAATCTGCAGCACATTCTGC +
Preference number: 4 (lower is better)
Translates to: CKQCRFMSSACV*SAASRICSTFC
Trigger: GCAGAATGTGCTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp CTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGGAGGGGTGCCGGTGGTaGAGGCTCTGCACCAGGAGC +
Preference number: 4 (lower is better)
Translates to: LERSLLYLLFPVGPVSSMEGCRW*RLCTRS
Trigger: GCTCCTGGTGCAGAGCCTTCACCACCGGCACCCCTC...CATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp GCTTTTGGACTATCATGCCAGTGGCAAGGGTCAGTCAGTACAAGACCCAAAGTGCCTCCTCCCAGCATGTaGGCTCTCGGTCTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: AFGLSCQWQGSVSTRPKVPPPSM*ALGLGG
Trigger: GCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGG...CACTTTGGGTCTTGTACTGACTGACCCTTGCCACTGGCATGATAGTCCAAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp GCTCCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCCCCGCTGGGCAGCTCTaGTGCCAGATGGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: APDREVPARKEFALFAIPPAGQL*CQMDRL
Trigger: CAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGG...GGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGGAGC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGGCGCCGCCAGCGATaGACTGTTTCGAAGGGTCCA +
Preference number: 4 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQRRRQR*TVSKGP
Trigger: TGGACCCTTCGAAACAGTGCATCGCTGGCGGCGCCT...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp TCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGGCCAGATGGACAGGCTaGTTGGCTGAAGTGGTGCCG +
Preference number: 4 (lower is better)
Translates to: SAGGDVANWLGVFTLQTEARWTG*LAEVVP
Trigger: CGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGC...CTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CGACACAGCTGGAAGCTCAGCGCCAACTTATACACATCCATGATGAGCAGCACGTACACTGTAGCCCCATaGGCTGACCTGGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: RHSWKLSANLYTSMMSSTYTVAP*ADLATG
Trigger: GCCTGTTGCCAGGTCAGCCCATGGGGCTACAGTGTA...CGTGCTGCTCATCATGGATGTGTATAAGTTGGCGCTGAGCTTCCAGCTGTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCGGGATCTCACCACTCTaGGCCACCTCCTCCCAGCAT +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIGISPL*ATSSQH
Trigger: ATGCTGGGAGGAGGTGGCCCAGAGTGGTGAGATCCC...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGGGAAGAGCCTCCCGCTaGGCAGCTCTGATGCCAGAT +
Preference number: 4 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQGRASR*AALMPD
Trigger: ATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTTCC...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTGATAGGCTTTCACAGAAGGTGACGATGGCAACATaGCCTTGCACACACTCTTCC +
Preference number: 4 (lower is better)
Translates to: SASRPWPDLTRPDRLSQKVTMAT*PCTHSS
Trigger: GGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCAC...CTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCCTCAGCCTCACGGATaGCCACACGTAACAGGGGTG +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIPQPHG*PHVTGV
Trigger: CACCCCTGTTACGTGTGGCCATCCGTGAGGCTGAGG...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCCTCAGCCTCACGGATaGCCACACGTAACAGGGGTG +
Preference number: 4 (lower is better)
Translates to: CDHSAGGDVANWLGVFTLPQPHG*PHVTGV
Trigger: CACCCCTGTTACGTGTGGCCATCCGTGAGGCTGAGG...GAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTTCAAGGCGACACAGCTaGAAGCTCAGCGCCAACTTA +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPSRRHS*KLSANL
Trigger: TAAGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGA...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
3UTR CAA 72 bp CCACCGGCTCCTTGCAGTGACGATGGCAACATGGCCTaGCACACACTCTTCCTTCTCACCAAGCACAAACTC +
Preference number: 4 (lower is better)
Translates to: PPAPCSDDGNMA*HTLFLLTKHKL
Trigger: GAGTTTGTGCTTGGTGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 72 bp CCAGTCTCGTGCGACATATCCCTCCAGGCCCAGCTTTaGGACTATCATGCCAGTGGCAAGGGTCAGTCAGTA +
Preference number: 4 (lower is better)
Translates to: PVSCDISLQAQL*DYHASGKGQSV
Trigger: TACTGACTGACCCTTGCCACTGGCATGATAGTCCAAAAGCTGGGCCTGGAGGGATATGTCGCACGAGACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTCCCGCTGGGCAGCTCTaGTGCCAGATGGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCPAGQL*CQMDRL
Trigger: CAGCCTGTCCATCTGGCATCAGAGCTGCCCAGCGGG...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR TCA 90 bp CCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTACATGGCATCAGAGATaGCAGCGGCAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: PTGVITLQVEMWPIGWVSTWHQR*QRQHGR
Trigger: TCTTCCATGCTGCCGCTGTCATCTCTGATGCCATGT...AGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGAGGCCTCGATGTACTaGCGACACAGCTGCTCAAGG +
Preference number: 4 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNREASMY*RHSCSR
Trigger: CCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTC...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACAGAACTCCGAGCCTaGTCCCTCCAGGTAAGCCTT +
Preference number: 4 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFTELRA*SLQVSL
Trigger: AAGGCTTACCTGGAGGGAGCAGGCTCGGAGTTCTGT...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGTTCATGTCCAGTGCCTaGGTCTTGTCAGCCGCCTCC +
Preference number: 4 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQFMSSA*VLSAAS
Trigger: GGAGGCGGCTGACAAGACGCAGGCACTGGACATGAA...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTGTGACGATGGCAACATaGCCTTGCACACACTCTTCC +
Preference number: 4 (lower is better)
Translates to: PTGVITLQVEMWPIGWVSVTMAT*PCTHSS
Trigger: GGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCAC...AGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCGGCCCAGCTGTAGCCTaGCAGCACTCTCACACACAA +
Preference number: 4 (lower is better)
Translates to: CDHSAGGDVANWLGVFTLGPAVA*QHSHTQ
Trigger: TTGTGTGTGAGAGTGCTGCCAGGCTACAGCTGGGCC...GAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCGAAGGCCTGTCTGCTaGGAACCATCTCCCCAATGG +
Preference number: 4 (lower is better)
Translates to: RCDHSAGGDVANWLGVFTRRPVC*EPSPQW
Trigger: CCATTGGGGAGATGGTTCCCAGCAGACAGGCCTTCG...AGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCACCAGACGACCAGGGTaGGCAGAAGAGTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: CDHSAGGDVANWLGVFTLTRRPG*AEESSW
Trigger: CCAAGAGGACTCTTCTGCCCACCCTGGTCGTCTGGT...GAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
3UTR CAA 72 bp CAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTaGACTCGGCCTGATAGGCTTTCACAGAAGCAAGCA +
Preference number: 4 (lower is better)
Translates to: QARKSASRPWPD*TRPDRLSQKQA
Trigger: TGCTTGCTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp AGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCGAAGGGTCCAAAGTTaGGCGTCAGGTACTCGACAC +
Preference number: 4 (lower is better)
Translates to: RCDHSAGGDVANWLGVFTRRVQS*ASGTRH
Trigger: GTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCG...AGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTCCAATGTCCACAGGCTaGTCGGAGGGTGTGCGAGGG +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCPMSTG*SEGVRG
Trigger: CCCTCGCACACCCTCCGATCAGCCTGTGGACATTGG...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR TCA 90 bp TTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGGCTTTGGGGAGGCCAAGGAGTCTATaGTGTCCAGCAGCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LFAIPCGACVLNEVQALGRPRSL*CPAAAA
Trigger: AGCAGCTGCTGCTGGACATCATAGACTCCTTGGCCT...CCCCAAAGCCTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR GCA 90 bp TCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTGATAGGCTTTCACAGAAGATGGCAACATGGCCTTaGACACACTCTTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: SASRPWPDLTRPDRLSQKMATWP*THSSFS
Trigger: TGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCAT...CTTCTGTGAAAGCCTATCAGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTACAACCAGAACATTCTaGAGATCTACAGAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPTTRTF*RSTEAS
Trigger: CGAGGCCTCTGTAGATCTGCAGAATGTTCTGGTTGT...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGATGAAGTTCAGGCAATaGTCCTTGAGCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: RFMSQQARKSASRPWPDLMKFRQ*SLSWPS
Trigger: GCTGGGCCAGCTCAAGGAGCATTGCCTGAACTTCAT...CAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCACTCGAAGGCCTGTCTaGTGGGAACCATCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEITRRPV*WEPSPQ
Trigger: TTGGGGAGATGGTTCCCAGCAGACAGGCCTTCGAGT...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCGCCGCCTCCAGAATCTaGAGCACATTCTGCACTGTG +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIAASRI*STFCTV
Trigger: CACAGTGCAGAATGTGCTGCAGATTCTGGAGGCGGC...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCCCAGCTCTGCACACTaGTTGTCAGAGATGTGGGAG +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIPSSAH*LSEMWE
Trigger: CTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGG...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp TCAGCCGCCTCCAGAATCTGCAGCACATTCTGCACTGTGACATTCATCTCTAGGCTGTCTGAGCAGCTGTaGTCAAAGTCCACGCTCGGA +
Preference number: 4 (lower is better)
Translates to: SAASRICSTFCTVTFISRLSEQL*SKSTLG
Trigger: TCCGAGCGTGGACTTTGACCACAGCTGCTCAGACAG...CCTAGAGATGAATGTCACAGTGCAGAATGTGCTGCAGATTCTGGAGGCGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp TGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTACACTGTAGCCCCATaGGCTGACCTGGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: CQLERSLLYLLFPVGPVSYTVAP*ADLATG
Trigger: GCCTGTTGCCAGGTCAGCCCATGGGGCTACAGTGTA...GGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp AGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGAGATGTAGCGTAGCATaGACTCGAAGGCCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: RDPQMSAPSSAHCLSEMWRCSVA*TRRPVC
Trigger: GCAGACAGGCCTTCGAGTCCATGCTACGCTACATCT...CCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
3UTR CAA 72 bp TGGCTCCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTaGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCC +
Preference number: 4 (lower is better)
Translates to: WLLTERCQLERS*LYLLFPVGPVS
Trigger: GGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGGAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
3UTR CAA 72 bp TGGCTCAGCAACCGCAGCGTGGGCAGCTTAGAGACCTaGGTGAATTGGTGTACAATGATGTGCAAACAGTGC +
Preference number: 4 (lower is better)
Translates to: WLSNRSVGSLET*VNWCTMMCKQC
Trigger: GCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp CCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATGTCAGCACCCGAAGGGTCCAAAGTTaGGCGTCAGGTACTCGACAC +
Preference number: 4 (lower is better)
Translates to: PIGWVSSLSKQRSSDVSTRRVQS*ASGTRH
Trigger: GTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCG...GGTGCTGACATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp ATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCTGCCTCCTCCCAGCATGTaGGCTCTCGGTCTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: ILYSISGNKVTSQQRQWLPPPSM*ALGLGG
Trigger: GCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGG...CAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp GTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATGTCAGCACCCAGCTCTACATGGCATCAGAGATaGCAGCGGCAGCATGGAAGA +
Preference number: 4 (lower is better)
Translates to: VGCLHSPNRDPQMSAPSSTWHQR*QRQHGR
Trigger: TCTTCCATGCTGCCGCTGTCATCTCTGATGCCATGT...AGAGCTGGGTGCTGACATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR TCA 90 bp AGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGACTCGGCCTCTTTCCGTGGGTACTTaGTCTTGTCTGTGTAGAGAA +
Preference number: 4 (lower is better)
Translates to: SQQARKSASRPWPDLTRPLSVGT*SCLCRE
Trigger: TTCTCTACACAGACAAGATCAAGTACCCACGGAAAG...AGGCCGAGTCAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR TCA 90 bp CTTGACCCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGGGATTCCTTCACTATaGAGTTCAGGCAATGCTCCT +
Preference number: 4 (lower is better)
Translates to: LDPTGVITLQVEMWPIGWGIPSL*SSGNAP
Trigger: AGGAGCATTGCCTGAACTTCATAGTGAAGGAATCCC...CCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGGGTCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTACAACCAGAACATTCTaGAGATCTACAGAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: PTGVITLQVEMWPIGWVSTTRTF*RSTEAS
Trigger: CGAGGCCTCTGTAGATCTGCAGAATGTTCTGGTTGT...AGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTCGAGGGGGCGGCTGCTaGTTCCGACGAACTATCTCT +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCRGGGC*FRRTIS
Trigger: AGAGATAGTTCGTCGGAAGCAGCAGCCGCCCCCTCG...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCCTGTCTGAGCAGCTGTaGTCAAAGTCCACGCTCGGA +
Preference number: 4 (lower is better)
Translates to: CQLERSLLYLLFPVGPVSLSEQL*SKSTLG
Trigger: TCCGAGCGTGGACTTTGACCACAGCTGCTCAGACAG...GGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCGTGAGCTCTCGGTCTTaGAGGCCAATTGTCCACATG +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIVSSRS*RPIVHM
Trigger: CATGTGGACAATTGGCCTCCAAGACCGAGAGCTCAC...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATCCGCTGTGGCGGGGGTaGGGAGCCCCGAAGCAGGTG +
Preference number: 4 (lower is better)
Translates to: FIFFTVSRETKSQASRDNPLWRG*GAPKQV
Trigger: CACCTGCTTCGGGGCTCCCCACCCCCGCCACAGCGG...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp CTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGAACGGGCAGCTAGGATaGCTTTGTGGGCTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: LTERCQLERSLLYLLFPVNGQLG*LCGLAV
Trigger: CACGGCCAGCCCACAAAGCCATCCTAGCTGCCCGTT...CACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp GAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGCGAAGGCCTGTCTGCTaGGAACCATCTCCCCAATGG +
Preference number: 4 (lower is better)
Translates to: EFALFAIPCGACVLNEVQRRPVC*EPSPQW
Trigger: CCATTGGGGAGATGGTTCCCAGCAGACAGGCCTTCG...CTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGGCTTTGGGGAGATGTAGCGTAGCATaGACTCGAAGGCCTGTCTGC +
Preference number: 4 (lower is better)
Translates to: LFAIPCGACVLNEVQALGRCSVA*TRRPVC
Trigger: GCAGACAGGCCTTCGAGTCCATGCTACGCTACATCT...CCCCAAAGCCTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp AGCTTCAAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTAGGCGCCGCCAGCGATaGACTGTTTCGAAGGGTCCA +
Preference number: 4 (lower is better)
Translates to: SFKCIPSYRFMSQQARKSRRRQR*TVSKGP
Trigger: TGGACCCTTCGAAACAGTGCATCGCTGGCGGCGCCT...AGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTTGAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCAGTGTATTGTCCGCTaGACCCCCAAACACATAGAG +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIQCIVR*TPKHIE
Trigger: CTCTATGTGTTTGGGGGTGCAGCGGACAATACACTG...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR GCA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCATGGCAACATGGCCTTaGACACACTCTTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFMATWP*THSSFS
Trigger: TGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCAT...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGAGGCCTCGATGTACTaGCGACACAGCTGCTCAAGG +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCEASMY*RHSCSR
Trigger: CCTTGAGCAGCTGTGTCGGCAGTACATCGAGGCCTC...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTTGACCCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGTGGTGTACAATGATGTaGAAACAGTGCCGCTTCATG +
Preference number: 4 (lower is better)
Translates to: LDPTGVITLQVEMWPIGWWCTMM*KQCRFM
Trigger: CATGAAGCGGCACTGTTTGCACATCATTGTACACCA...CCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGGGTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGCTTCAAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGGAAGAGCCTCCCGCTaGGCAGCTCTGATGCCAGAT +
Preference number: 4 (lower is better)
Translates to: SFKCIPSYRFMSQQARKSGRASR*AALMPD
Trigger: ATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTTCC...AGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTTGAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAAGCACGTCTTCTACATaGCCTTTCCGTGGGTACTTG +
Preference number: 4 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNRSTSST*PFRGYL
Trigger: CAAGTACCCACGGAAAGGCCATGTAGAAGACGTGCT...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
3UTR CAA 72 bp CCCTCAGTCTTTCTGTTCACCTGGAAACAGCTGTCCTaGTTCTGGCCCTCACGGATGCTGTACCAATACCTT +
Preference number: 4 (lower is better)
Translates to: PSVFLFTWKQLS*FWPSRMLYQYL
Trigger: AAGGTATTGGTACAGCATCCGTGAGGGCCAGAACAAGGACAGCTGTTTCCAGGTGAACAGAAAGACTGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
3UTR CAA 72 bp CAACCGCAGCGTGGGCAGCTTAGAGACCTTGGTGAATaGGTGTACAATGATGTGCAAACAGTGCCGCTTCAT +
Preference number: 4 (lower is better)
Translates to: QPQRGQLRDLGE*VYNDVQTVPLH
Trigger: ATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGGGGATTCCTTCACTATaGAGTTCAGGCAATGCTCCT +
Preference number: 4 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQGIPSL*SSGNAP
Trigger: AGGAGCATTGCCTGAACTTCATAGTGAAGGAATCCC...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCGATGGCATCCTTATATaGCACGACTGTGTGCTTGCT +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEIDGILI*HDCVLA
Trigger: AGCAAGCACACAGTCGTGGCATATAAGGATGCCATC...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp AGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGTGTTGTTGTCTACAGTaGCCCCAAAGATGTACATGG +
Preference number: 4 (lower is better)
Translates to: RDPQMSAPSSAHCLSEMWCCCLQ*PQRCTW
Trigger: CCATGTACATCTTTGGGGGCACTGTAGACAACAACA...CCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp TCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGCTTGGATCAGAGATGTaGCAATGTCCACAGGCTGAT +
Preference number: 4 (lower is better)
Translates to: SAGGDVANWLGVFTLQTELGSEM*QCPQAD
Trigger: ATCAGCCTGTGGACATTGGCACATCTCTGATCCAAG...CTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTACAGAACTCCGAGCCTaGTCCCTCCAGGTAAGCCTT +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCTELRA*SLQVSL
Trigger: AAGGCTTACCTGGAGGGAGCAGGCTCGGAGTTCTGT...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATATGGAGATGTTCACCTaGCCGTCCTCTGGCATGAAC +
Preference number: 4 (lower is better)
Translates to: EMWPIGWVSSLSKQRSSDMEMFT*PSSGMN
Trigger: GTTCATGCCAGAGGACGGGCAGGTGAACATCTCCAT...ATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCTCTCTAGGTTTTGCTTaGAGTAAGCCTGCAGTCGGT +
Preference number: 4 (lower is better)
Translates to: AGGDVANWLGVFTLQTEISLGFA*SKPAVG
Trigger: ACCGACTGCAGGCTTACTGCAAGCAAAACCTAGAGA...GATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCTTCCACTCCGTCCACTaGCCAGTTGCAAATTTGTAT +
Preference number: 4 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFFHSVH*PVANLY
Trigger: ATACAAATTTGCAACTGGCCAGTGGACGGAGTGGAA...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp AAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCGCTGCTTGGCTGAAGTaGTGCCGAAGTCTAAGCCAA +
Preference number: 4 (lower is better)
Translates to: KCIPSYRFMSQQARKSASAAWLK*CRSLSQ
Trigger: TTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGC...GCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGTACATGGCCTTTCCGTaGGTACTTGATCTTGTCTGT +
Preference number: 4 (lower is better)
Translates to: RDPQMSAPSSAHCLSEMWYMAFP*VLDLVC
Trigger: ACAGACAAGATCAAGTACCCACGGAAAGGCCATGTA...CCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGCTTCAAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGGCCCAGCTGTAGCCTaGCAGCACTCTCACACACAA +
Preference number: 4 (lower is better)
Translates to: SFKCIPSYRFMSQQARKSGPAVA*QHSHTQ
Trigger: TTGTGTGTGAGAGTGCTGCCAGGCTACAGCTGGGCC...AGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTTGAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp ATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCTGCAATGCTCCTTGAGCTaGCCCAGCTGTAGCCTGGCA +
Preference number: 4 (lower is better)
Translates to: ILYSISGNKVTSQQRQWLQCSLS*PSCSLA
Trigger: TGCCAGGCTACAGCTGGGCCAGCTCAAGGAGCATTG...CAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
3UTR CAA 72 bp TGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTaGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGA +
Preference number: 4 (lower is better)
Translates to: CDHSAGGDVANW*GVFTLQTEILR
Trigger: TCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000231307.2
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp GTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATGTCAGCACCCAGCTCTCTTTCCGTGGGTACTTaGTCTTGTCTGTGTAGAGAA +
Preference number: 4 (lower is better)
Translates to: VGCLHSPNRDPQMSAPSSLSVGT*SCLCRE
Trigger: TTCTCTACACAGACAAGATCAAGTACCCACGGAAAG...AGAGCTGGGTGCTGACATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCGCCAGATGGACAGGCTaGTTGGCTGAAGTGGTGCCG +
Preference number: 4 (lower is better)
Translates to: LIGFIFFTVSRETKSQASARWTG*LAEVVP
Trigger: CGGCACCACTTCAGCCAAGCAGCCTGTCCATCTGGC...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGATGAAGTTCAGGCAATaGTCCTTGAGCTGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: LTERCQLERSLLYLLFPVMKFRQ*SLSWPS
Trigger: GCTGGGCCAGCTCAAGGAGCATTGCCTGAACTTCAT...CACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp AGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACCGCTTCATGTCCAGTaGCTGCGTCTTGTCAGCCGC +
Preference number: 4 (lower is better)
Translates to: RLYILYSISGNKVTSQQRPLHVQ*LRLVSR
Trigger: GCGGCTGACAAGACGCAGGCACTGGACATGAAGCGG...TCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATATGATGTGCAAACAGTaGCGCTTCATGTCCAGTGCC +
Preference number: 4 (lower is better)
Translates to: EMWPIGWVSSLSKQRSSDMMCKQ*RFMSSA
Trigger: GGCACTGGACATGAAGCGGCACTGTTTGCACATCAT...ATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCATGTCCAGCAGCAGCTaGTGGCTCAGCAACCGCAGC +
Preference number: 4 (lower is better)
Translates to: LIGFIFFTVSRETKSQASMSSSS*WLSNRS
Trigger: GCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGACAT...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp CTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGCTGCTTGGCTGAAGTaGTGCCGAAGTCTAAGCCAA +
Preference number: 4 (lower is better)
Translates to: LTERCQLERSLLYLLFPVAAWLK*CRSLSQ
Trigger: TTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGC...CACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTAGCTCTGATGCCAGATaGACAGGCTGCTTGGCTGAA +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCSSDAR*TGCLAE
Trigger: TTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCT...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp ATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAATGACAGCGGCAGCATaGAAGAGCCTCCCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: IGFIFFTVSRETKSQASRMTAAA*KSLPLG
Trigger: GCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCAT...TCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCCAGGGGCCTCCTTaGGAGCTAGGGCCCCATCTT +
Preference number: 4 (lower is better)
Translates to: FIFFTVSRETKSQASRDNGQGPP*ELGPHL
Trigger: AAGATGGGGCCCTAGCTCCCAAGGAGGCCCCTGGCC...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
3UTR CAA 72 bp ACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTaGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAG +
Preference number: 4 (lower is better)
Translates to: TERCQLERSLLY*LFPVGPVSSMK
Trigger: CTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp ATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGACGAGGGGGCGGCTGCTaGTTCCGACGAACTATCTCT +
Preference number: 4 (lower is better)
Translates to: IGFIFFTVSRETKSQASRRGGGC*FRRTIS
Trigger: AGAGATAGTTCGTCGGAAGCAGCAGCCGCCCCCTCG...TCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp AGCTTCAAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTATGGAGATGTTCACCTaGCCGTCCTCTGGCATGAAC +
Preference number: 4 (lower is better)
Translates to: SFKCIPSYRFMSQQARKSMEMFT*PSSGMN
Trigger: GTTCATGCCAGAGGACGGGCAGGTGAACATCTCCAT...AGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTTGAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp TGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCATCTGCAGCACATTCTaGACTGTGACATTCATCTCT +
Preference number: 4 (lower is better)
Translates to: CDHSAGGDVANWLGVFTLICSTF*TVTFIS
Trigger: AGAGATGAATGTCACAGTGCAGAATGTGCTGCAGAT...GAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp ATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGGTCAAAGGCCACCATaGTGTGTCCGTAGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: IGFIFFTVSRETKSQASRGQRPP*CVRSAA
Trigger: AGCGGCGCTACGGACACACCATGGTGGCCTTTGACC...TCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp ATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCTGAGCTCTGATGCCAGATaGACAGGCTGCTTGGCTGAA +
Preference number: 4 (lower is better)
Translates to: ILYSISGNKVTSQQRQWLSSDAR*TGCLAE
Trigger: TTCAGCCAAGCAGCCTGTCCATCTGGCATCAGAGCT...CAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp ATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCTGTCAAGGCGACACAGCTaGAAGCTCAGCGCCAACTTA +
Preference number: 4 (lower is better)
Translates to: ILYSISGNKVTSQQRQWLSRRHS*KLSANL
Trigger: TAAGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGA...CAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGCTCCTTGAGCTaGCCCAGCTGTAGCCTGGCA +
Preference number: 4 (lower is better)
Translates to: RLYILYSISGNKVTSQQRQCSLS*PSCSLA
Trigger: TGCCAGGCTACAGCTGGGCCAGCTCAAGGAGCATTG...TCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCGAGACCTTGGTGAATTaGTGTACAATGATGTGCAAA +
Preference number: 4 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFETLVN*CTMMCK
Trigger: TTTGCACATCATTGTACACCAATTCACCAAGGTCTC...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CCA 90 bp CGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGCTGACCTTGGTGAATTaGTGTACAATGATGTGCAAA +
Preference number: 4 (lower is better)
Translates to: RFMSQQARKSASRPWPDLLTLVN*CTMMCK
Trigger: TTTGCACATCATTGTACACCAATTCACCAAGGTCAG...CAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGCTTGGATCAGAGATGTaGCAATGTCCACAGGCTGAT +
Preference number: 4 (lower is better)
Translates to: LTERCQLERSLLYLLFPVLGSEM*QCPQAD
Trigger: ATCAGCCTGTGGACATTGGCACATCTCTGATCCAAG...CACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCACTCGAAGGCCTGTCTaGTGGGAACCATCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: LIGFIFFTVSRETKSQASTRRPV*WEPSPQ
Trigger: TTGGGGAGATGGTTCCCAGCAGACAGGCCTTCGAGT...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTTCTCTAGGTTTTGCTTaGAGTAAGCCTGCAGTCGGT +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCSLGFA*SKPAVG
Trigger: ACCGACTGCAGGCTTACTGCAAGCAAAACCTAGAGA...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
3UTR CAA 72 bp AACTGGAACCTGTACATTTCCCCACTGCGAATGTTGTaGTCTACAGTGCCCCCAAAGATGTACATGGCATCA +
Preference number: 4 (lower is better)
Translates to: NWNLYISPLRML*STVPPKMYMAS
Trigger: TGATGCCATGTACATCTTTGGGGGCACTGTAGACAACAACATTCGCAGTGGGGAAATGTACAGGTTCCAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp AAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCTCCACGTCTTGTCTTTaGATTCAAACTGGAAGAGGT +
Preference number: 4 (lower is better)
Translates to: KCIPSYRFMSQQARKSASSTSCL*IQTGRG
Trigger: ACCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGA...GCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR GCA 90 bp CCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTTGTTGTTGTCTACAGTaGCCCCAAAGATGTACATGG +
Preference number: 4 (lower is better)
Translates to: PDREVPARKEFALFAIPCCCCLQ*PQRCTW
Trigger: CCATGTACATCTTTGGGGGCACTGTAGACAACAACA...ACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp GCTCCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCATCTGCAGCACATTCTaGACTGTGACATTCATCTCT +
Preference number: 4 (lower is better)
Translates to: APDREVPARKEFALFAIPICSTF*TVTFIS
Trigger: AGAGATGAATGTCACAGTGCAGAATGTGCTGCAGAT...GGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGGAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp TTCAAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCTGGTGTACAATGATGTaGAAACAGTGCCGCTTCATG +
Preference number: 4 (lower is better)
Translates to: FKCIPSYRFMSQQARKSAWCTMM*KQCRFM
Trigger: CATGAAGCGGCACTGTTTGCACATCATTGTACACCA...GGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp GCTCCTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCCACCAAACACATAGATaGCATCCTTATATGCCACGA +
Preference number: 4 (lower is better)
Translates to: APDREVPARKEFALFAIPHQTHR*HPYMPR
Trigger: TCGTGGCATATAAGGATGCCATCTATGTGTTTGGTG...GGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CCA 90 bp GAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATCACCAAACACATAGATaGCATCCTTATATGCCACGA +
Preference number: 4 (lower is better)
Translates to: EMWPIGWVSSLSKQRSSDHQTHR*HPYMPR
Trigger: TCGTGGCATATAAGGATGCCATCTATGTGTTTGGTG...ATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp TTCAAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCTTCATCATGATCACCTaGTTGAAGTGGGATTCCTTC +
Preference number: 4 (lower is better)
Translates to: FKCIPSYRFMSQQARKSAFIMIT*LKWDSF
Trigger: GAAGGAATCCCACTTCAATCAGGTGATCATGATGAA...GGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR GCA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCATGATGTGCAAACAGTaGCGCTTCATGTCCAGTGCC +
Preference number: 4 (lower is better)
Translates to: LIGFIFFTVSRETKSQASMMCKQ*RFMSSA
Trigger: GGCACTGGACATGAAGCGGCACTGTTTGCACATCAT...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp AGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGAAGCACGTCTTCTACATaGCCTTTCCGTGGGTACTTG +
Preference number: 4 (lower is better)
Translates to: RLYILYSISGNKVTSQQRSTSST*PFRGYL
Trigger: CAAGTACCCACGGAAAGGCCATGTAGAAGACGTGCT...TCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CCA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCTGCTTGTCAGAGATGTaGGAGGCCAAGGAGTCTATG +
Preference number: 4 (lower is better)
Translates to: LIGFIFFTVSRETKSQASCLSEM*EAKESM
Trigger: CATAGACTCCTTGGCCTCCCACATCTCTGACAAGCA...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR TCA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGTACTCGACACTGTCTaGGCAGCTGTGGTCAAAGTC +
Preference number: 4 (lower is better)
Translates to: FIFFTVSRETKSQASRDNVLDTV*AAVVKV
Trigger: GACTTTGACCACAGCTGCTCAGACAGTGTCGAGTAC...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR GCA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATCCCCAAAGACGAACATaGTGCTCCCATAGACCACAG +
Preference number: 4 (lower is better)
Translates to: FIFFTVSRETKSQASRDNPQRRT*CSHRPQ
Trigger: CTGTGGTCTATGGGAGCAGCATGTTCGTCTTTGGGG...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACCTGCACAGATaGCCAAAACTAGATGAAACC +
Preference number: 4 (lower is better)
Translates to: LIGFIFFTVSRETKSQASRDLHR*PKLDET
Trigger: GGTTTCATCTAGTTTTGGTCATCTGTGCAGGTCTCT...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
3UTR CAA 72 bp TCTTTGAATTCAAACTGGAAGAGGTTGTTAGTTATCTaGGCTCCACTCTGTCCTGAGAACACGAACATCTTA +
Preference number: 4 (lower is better)
Translates to: SLNSNWKRLLVI*APLCPENTNIL
Trigger: TAAGATGTTCGTGTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAATTCAAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR TCA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATTTCATCATGATCACCTaGTTGAAGTGGGATTCCTTC +
Preference number: 4 (lower is better)
Translates to: FIFFTVSRETKSQASRDNFIMIT*LKWDSF
Trigger: GAAGGAATCCCACTTCAATCAGGTGATCATGATGAA...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS GCA 90 bp CGGGCGCCCACGAATTCGTCACAGGGCGGGAGGCGCCGCCAGCGATaGACTGTTTCGAAGGGTCCAAAGTTGAGCGTCAGGTACTCGACA +
Preference number: 5 (lower is better)
Translates to: RAPTNSSQGGRRRQR*TVSKGPKLSVRYST
Trigger: TGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAACAGTGCATCGCTGGCGGCGCCTCCCGCCCTGTGACGAATTCGTGGGCGCCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 90 bp TTGTCTGAGGATAGTGGACAATGGCCAAGAGGTGCCCAGGCCTGCTaGGGAGAGCTGGGACCTAGAACACTGGGGCCAGAGCCTGACCTT +
Preference number: 5 (lower is better)
Translates to: LSEDSGQWPRGAQAC*GELGPRTLGPEPDL
Trigger: AAGGTCAGGCTCTGGCCCCAGTGTTCTAGGTCCCAGCTCTCCCCAGCAGGCCTGGGCACCTCTTGGCCATTGTCCACTATCCTCAGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS TCA 90 bp GCGGGAGGCGCCGCCAGCGATGCACTGTTTCGAAGGGTCCAAAGTTaGGCGTCAGGTACTCGACACTGTCTGAGCAGCTGTGGTCAAAGT +
Preference number: 5 (lower is better)
Translates to: AGGAASDALFRRVQS*ASGTRHCLSSCGQS
Trigger: ACTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAACAGTGCATCGCTGGCGGCGCCTCCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 90 bp GGTCCAAAGTTGAGCGTCAGGTACTCGACACTGTCTGAGCAGCTGTaGTCAAAGTCCACGCTCGGAGCCACCTTGGAGCGTACCCCTCCT +
Preference number: 5 (lower is better)
Translates to: GPKLSVRYSTLSEQL*SKSTLGATLERTPP
Trigger: AGGAGGGGTACGCTCCAAGGTGGCTCCGAGCGTGGACTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 90 bp GAACATCTTATCCCGGCACACAGCCACAGGGAAGTTGCAACAGGATaGGGGGATCTCACCACTCTGGGCCACCTCCTCCCAGCATGTGAG +
Preference number: 5 (lower is better)
Translates to: EHLIPAHSHREVATG*GDLTTLGHLLPACE
Trigger: CTCACATGCTGGGAGGAGGTGGCCCAGAGTGGTGAGATCCCCCCATCCTGTTGCAACTTCCCTGTGGCTGTGTGCCGGGATAAGATGTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000232372.2
CDS TCA 90 bp CAGGGCCTCCAAGGCCTGAGGCTACACTATCCTCCTCCCAGCATGTaGGCTCTCGGTCTTGGAGGCCAATTGTCCACATGTCGTTCAACC +
Preference number: 5 (lower is better)
Translates to: QGLQGLRLHYPPPSM*ALGLGGQLSTCRST
Trigger: GGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGATAGTGTAGCCTCAGGCCTTGGAGGCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS TCA 90 bp TGTTTCGAAGGGTCCAAAGTTGAGCGTCAGGTACTCGACACTGTCTaGGCAGCTGTGGTCAAAGTCCACGCTCGGAGCCACCTTGGAGCG +
Preference number: 5 (lower is better)
Translates to: CFEGSKVERQVLDTV*AAVVKVHARSHLGA
Trigger: CGCTCCAAGGTGGCTCCGAGCGTGGACTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS TCA 90 bp AGTACGGGGCTGCAAACAGGTAGAGCGAGTCCTCAGGGGGCATGTTaGCCTCGCCATAGTAGATGTAGCGTAGCATGGACTCGAAGGCCT +
Preference number: 5 (lower is better)
Translates to: STGLQTGRASPQGAC*PRHSRCSVAWTRRP
Trigger: AGGCCTTCGAGTCCATGCTACGCTACATCTACTATGGCGAGGTCAACATGCCCCCTGAGGACTCGCTCTACCTGTTTGCAGCCCCGTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231307.2
CDS GCA 90 bp GAAGGCTCCGTTGTCTCCACCAAACACATAGATGGCATCCTTATATaGCACGACTGTGTGCTTGCTGCGCCGGGCGCCCACGAATTCGTC +
Preference number: 5 (lower is better)
Translates to: EGSVVSTKHIDGILI*HDCVLAAPGAHEFV
Trigger: GACGAATTCGTGGGCGCCCGGCGCAGCAAGCACACAGTCGTGGCATATAAGGATGCCATCTATGTGTTTGGTGGAGACAACGGAGCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231292.2
CDS CCA 90 bp TCACCACTCTGGGCCACCTCCTCCCAGCATGTGAGCTCTCGGTCTTaGAGGCCAATTGTCCACATGTCGTTCAACCTGGCATTGCCATCA +
Preference number: 5 (lower is better)
Translates to: SPLWATSSQHVSSRS*RPIVHMSFNLALPS
Trigger: TGATGGCAATGCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGTGGCCCAGAGTGGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000232372.2
CDS-3UTR CAA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCGGCAGAAGAGTCCTCTaGGGGTCTAGCCTGCTCAGG +
Preference number: 5 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFGRRVL*GSSLLR
Trigger: CCTGAGCAGGCTAGACCCCAAGAGGACTCTTCTGCC...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS GCA 90 bp CGTCTTTCCGTTGTCTCCACCAAACACATAGATGGCATCCTTATATaGCACGACTGTGTGCTTGCTGCGCCGGGCGCCCACGAATTCGTC +
Preference number: 5 (lower is better)
Translates to: RLSVVSTKHIDGILI*HDCVLAAPGAHEFV
Trigger: GACGAATTCGTGGGCGCCCGGCGCAGCAAGCACACAGTCGTGGCATATAAGGATGCCATCTATGTGTTTGGTGGAGACAACGGAAAGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS GCA 90 bp CACTGGGGCCAGAGCCTGACCTTGGTGAATTGGTGTACAATGATGTaGAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTCTTGTCAGCC +
Preference number: 5 (lower is better)
Translates to: HWGQSLTLVNWCTMM*KQCRFMSSACVLSA
Trigger: GGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp CTGTATGTCCAGCTCCCAGTCTCGTGCGACATATCCCTCCAGGCCCAGCTTTTGGGTCTTGGAGGCCAATaGTCCACATGTCGTTCAACC +
Preference number: 5 (lower is better)
Translates to: LYVQLPVSCDISLQAQLLGLGGQ*STCRST
Trigger: GGTTGAACGACATGTGGACAATTGGCCTCCAAGACC...CAAAAGCTGGGCCTGGAGGGATATGTCGCACGAGACTGGGAGCTGGACATACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS GCA 90 bp CAGAGCCTGACCTTGGTGAATTGGTGTACAATGATGTGCAAACAGTaGCGCTTCATGTCCAGTGCCTGCGTCTTGTCAGCCGCCTCCAGA +
Preference number: 5 (lower is better)
Translates to: QSLTLVNWCTMMCKQ*RFMSSACVLSAASR
Trigger: TCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CCA 90 bp AGCTGGGACCTAGAACACTGGGGCCAGAGCCTGACCTTGGTGAATTaGTGTACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGCC +
Preference number: 5 (lower is better)
Translates to: SWDLEHWGQSLTLVN*CTMMCKQCRFMSSA
Trigger: GGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAGGTCCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CCA 90 bp AAACTAGATGAAACCAGACGACCAGGGTGGGCAGAAGAGTCCTCTTaGGGTCTAGCCTGCTCAGGCCTAGGTTGTCTGAGGATAGTGGAC +
Preference number: 5 (lower is better)
Translates to: KLDETRRPGWAEESS*GLACSGLGCLRIVD
Trigger: GTCCACTATCCTCAGACAACCTAGGCCTGAGCAGGCTAGACCCCAAGAGGACTCTTCTGCCCACCCTGGTCGTCTGGTTTCATCTAGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CCA 90 bp CCTGAGGCTACACTATCCTCCTCCCAGCATGTGAGCTCTCGGTCTTaGAGGCCAATTGTCCACATGTCGTTCAACCTGGCATTGCCATCA +
Preference number: 5 (lower is better)
Translates to: PEATLSSSQHVSSRS*RPIVHMSFNLALPS
Trigger: TGATGGCAATGCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGATAGTGTAGCCTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp CTTGACCCCACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGCCACTGCGAATGTTGTaGTCTACAGTGCCCCCAAAG +
Preference number: 5 (lower is better)
Translates to: LDPTGVITLQVEMWPIGWPLRML*STVPPK
Trigger: CTTTGGGGGCACTGTAGACAACAACATTCGCAGTGG...CCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTGGGGTCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp TCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGTTCAGGCAATGCTCCTaGAGCTGGCCCAGCTGTAGC +
Preference number: 5 (lower is better)
Translates to: SAGGDVANWLGVFTLQTEFRQCS*SWPSCS
Trigger: GCTACAGCTGGGCCAGCTCAAGGAGCATTGCCTGAA...CTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS TCA 90 bp AGCAAAGATCCAGAGCTTATCACTGTACACTGTAGCCCCATGGGCTaGCCTGGCAACAGGCAACCTCCCTTCAATCTTCCACTCCGTCCA +
Preference number: 5 (lower is better)
Translates to: SKDPELITVHCSPMG*PGNRQPPFNLPLRP
Trigger: TGGACGGAGTGGAAGATTGAAGGGAGGTTGCCTGTTGCCAGGTCAGCCCATGGGGCTACAGTGTACAGTGATAAGCTCTGGATCTTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
ENSMUST00000232372.2
CDS-3UTR CAA 90 bp CGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCAGACCCTGGCCTGACTTGTCGAAGGGTCCAAAGTaGAGCGTCAGGTACTCGACA +
Preference number: 5 (lower is better)
Translates to: RFMSQQARKSASRPWPDLSKGPK*SVRYST
Trigger: TGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGA...CAAGTCAGGCCAGGGTCTGCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp AGAGATCCTCAGATGTCAGCACCCAGCTCTGCACACTGCTTGTCAGAGATGTGGTCGAAGGGTCCAAAGTaGAGCGTCAGGTACTCGACA +
Preference number: 5 (lower is better)
Translates to: RDPQMSAPSSAHCLSEMWSKGPK*SVRYST
Trigger: TGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGA...CCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGAGGATCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCGGTCTTGGAGGCCAATaGTCCACATGTCGTTCAACC +
Preference number: 5 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFGLGGQ*STCRST
Trigger: GGTTGAACGACATGTGGACAATTGGCCTCCAAGACC...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp CTTCCTCTAGCTTCTGGGCCAGCCACTCTTGAGCCTGTACGATCTTCCTACGAATGTGAGCTCTCGGTCTaGGAGGCCAATTGTCCACAT +
Preference number: 5 (lower is better)
Translates to: LPLASGPATLEPVRSSYECELSV*EANCPH
Trigger: ATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACA...TTCGTAGGAAGATCGTACAGGCTCAAGAGTGGCTGGCCCAGAAGCTAGAGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp ACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGTCATTGGGCAGTGTATaGTCCGCTGCACCCCCAAAC +
Preference number: 5 (lower is better)
Translates to: TLQVEMWPIGWVSSLSKQSLGSV*SAAPPN
Trigger: GTTTGGGGGTGCAGCGGACAATACACTGCCCAATGA...CTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp AGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTTCCCCACTGCGAATGTaGTTGTCTACAGTGCCCCCA +
Preference number: 5 (lower is better)
Translates to: RCDHSAGGDVANWLGVFTSPLRM*LSTVPP
Trigger: TGGGGGCACTGTAGACAACAACATTCGCAGTGGGGA...AGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGACCACTGCGAATGTTGTaGTCTACAGTGCCCCCAAAG +
Preference number: 5 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNRPLRML*STVPPK
Trigger: CTTTGGGGGCACTGTAGACAACAACATTCGCAGTGG...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp CTGACAGAGAGGTGCCAGCTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGTCCAGTGCCTGCGTCTaGTCAGCCGCCTCCAGAATC +
Preference number: 5 (lower is better)
Translates to: LTERCQLERSLLYLLFPVSSACV*SAASRI
Trigger: GATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGA...CACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAGCTGGCACCTCTCTGTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp GAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGAGCTCTGCACACTGCTaGTCAGAGATGTGGGAGGCC +
Preference number: 5 (lower is better)
Translates to: EFALFAIPCGACVLNEVQSSAHC*SEMWEA
Trigger: GGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCT...CTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp CACAGGTGTGATCACTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCCCGTCCACTGGCCAGTaGCAAATTTGTATTCAAAGA +
Preference number: 5 (lower is better)
Translates to: HRCDHSAGGDVANWLGVFPSTGQ*QICIQR
Trigger: TCTTTGAATACAAATTTGCAACTGGCCAGTGGACGG...GAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAGTGATCACACCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp CTCTGCAGGTGGAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGACCTGACCTTGGTGAATaGGTGTACAATGATGTGCAA +
Preference number: 5 (lower is better)
Translates to: LCRWRCGQLVGCLHSPNRPDLGE*VYNDVQ
Trigger: TTGCACATCATTGTACACCAATTCACCAAGGTCAGG...TCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTCCACCTGCAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp ATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATGGCTGGATGGCAACATGGCCTaGCACACACTCTTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: ILYSISGNKVTSQQRQWLDGNMA*HTLFLL
Trigger: GAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATC...CAGCCATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp AGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGATTCAGGCAATGCTCCTaGAGCTGGCCCAGCTGTAGC +
Preference number: 5 (lower is better)
Translates to: RLYILYSISGNKVTSQQRFRQCS*SWPSCS
Trigger: GCTACAGCTGGGCCAGCTCAAGGAGCATTGCCTGAA...TCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp CTAGAAAGGAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAGGTTGTTAGTTATCTaGGCTCCACTCTGTCCTGAG +
Preference number: 5 (lower is better)
Translates to: LERSLLYLLFPVGPVSSMRLLVI*APLCPE
Trigger: CTCAGGACAGAGTGGAGCCAAGATAACTAACAACCT...CATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTCCTTTCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp AAGTGTATCCCCTCTTACCGTTTCATGAGTCAGCAGGCTAGAAAATCTGCCAGCGTCCACGTCTTGTCTTaGAATTCAAACTGGAAGAGG +
Preference number: 5 (lower is better)
Translates to: KCIPSYRFMSQQARKSASVHVLS*NSNWKR
Trigger: CCTCTTCCAGTTTGAATTCAAAGACAAGACGTGGAC...GCTGGCAGATTTTCTAGCCTGCTGACTCATGAAACGGTAAGAGGGGATACACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp GAGTTTGCTTTATTTGCTATTCCCTGTGGGGCCTGTGTCCTCAATGAAGTGCAGATGCGTGTCCACGTCTaGTCTTTGAATTCAAACTGG +
Preference number: 5 (lower is better)
Translates to: EFALFAIPCGACVLNEVQMRVHV*SLNSNW
Trigger: CCAGTTTGAATTCAAAGACAAGACGTGGACACGCAT...CTGCACTTCATTGAGGACACAGGCCCCACAGGGAATAGCAAATAAAGCAAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp CTCATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCTCCCCACTGCGAATGTaGTTGTCTACAGTGCCCCCA +
Preference number: 5 (lower is better)
Translates to: LIGFIFFTVSRETKSQASSPLRM*LSTVPP
Trigger: TGGGGGCACTGTAGACAACAACATTCGCAGTGGGGA...GCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTATGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATTCCAGTGCCTGCGTCTaGTCAGCCGCCTCCAGAATC +
Preference number: 5 (lower is better)
Translates to: FIFFTVSRETKSQASRDNSSACV*SAASRI
Trigger: GATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGA...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp ATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGATGGCAACATGGCCTaGCACACACTCTTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: IGFIFFTVSRETKSQASRDGNMA*HTLFLL
Trigger: GAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATC...TCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231307.2
CDS-3UTR CAA 90 bp GAGATGTGGCCAATTGGTTGGGTGTCTTCACTCTCCAAACAGAGATCCTCAGATTGGCCAGTTGCAAATTaGTATTCAAAGAGGTCATTT +
Preference number: 5 (lower is better)
Translates to: EMWPIGWVSSLSKQRSSDWPVAN*YSKRSF
Trigger: AAATGACCTCTTTGAATACAAATTTGCAACTGGCCA...ATCTGAGGATCTCTGTTTGGAGAGTGAAGACACCCAACCAATTGGCCACATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATTGTGAGCTCTCGGTCTaGGAGGCCAATTGTCCACAT +
Preference number: 5 (lower is better)
Translates to: FIFFTVSRETKSQASRDNCELSV*EANCPH
Trigger: ATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACA...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS-3UTR CAA 90 bp ATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGATCAAACTGGAAGAGGTaGTTAGTTATCTTGGCTCCA +
Preference number: 5 (lower is better)
Translates to: IGFIFFTVSRETKSQASRSNWKR*LVILAP
Trigger: TGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGA...TCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp TTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGAGACAATAGAGACCTTGGTGAATaGGTGTACAATGATGTGCAA +
Preference number: 5 (lower is better)
Translates to: FIFFTVSRETKSQASRDNRDLGE*VYNDVQ
Trigger: TTGCACATCATTGTACACCAATTCACCAAGGTCTCT...ATTGTCTCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023444.11
CDS-3UTR CAA 90 bp ATAGGCTTTATATTCTTTACAGTATCTCGGGAAACAAAGTCACAAGCCAGCAGATGGCCAGTTGCAAATTaGTATTCAAAGAGGTCATTT +
Preference number: 5 (lower is better)
Translates to: IGFIFFTVSRETKSQASRWPVAN*YSKRSF
Trigger: AAATGACCTCTTTGAATACAAATTTGCAACTGGCCA...TCTGCTGGCTTGTGACTTTGTTTCCCGAGATACTGTAAAGAATATAAAGCCTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS CCA 72 bp AGCAGCTGTGGTCAAAGTCCACGCTCGGAGCCACCTTaGAGCGTACCCCTCCTGTCAAGGCCCCGGACCCAA +
Preference number: 6 (lower is better)
Translates to: SSCGQSPRSEPP*SVPLLSRPRTQ
Trigger: TTGGGTCCGGGGCCTTGACAGGAGGGGTACGCTCCAAGGTGGCTCCGAGCGTGGACTTTGACCACAGCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 72 bp GATAGTGGACAATGGCCAAGAGGTGCCCAGGCCTGCTaGGGAGAGCTGGGACCTAGAACACTGGGGCCAGAG +
Preference number: 6 (lower is better)
Translates to: DSGQWPRGAQAC*GELGPRTLGPE
Trigger: CTCTGGCCCCAGTGTTCTAGGTCCCAGCTCTCCCCAGCAGGCCTGGGCACCTCTTGGCCATTGTCCACTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS GCA 72 bp ACGAATTCGTCACAGGGCGGGAGGCGCCGCCAGCGATaGACTGTTTCGAAGGGTCCAAAGTTGAGCGTCAGG +
Preference number: 6 (lower is better)
Translates to: TNSSQGGRRRQR*TVSKGPKLSVR
Trigger: CCTGACGCTCAACTTTGGACCCTTCGAAACAGTGCATCGCTGGCGGCGCCTCCCGCCCTGTGACGAATTCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS GCA 72 bp AGATGGCATCCTTATATGCCACGACTGTGTGCTTGCTaGGCCGGGCGCCCACGAATTCGTCACAGGGCGGGA +
Preference number: 6 (lower is better)
Translates to: RWHPYMPRLCAC*AGRPRIRHRAG
Trigger: TCCCGCCCTGTGACGAATTCGTGGGCGCCCGGCGCAGCAAGCACACAGTCGTGGCATATAAGGATGCCATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 72 bp CCCAGGCCTGCTGGGGAGAGCTGGGACCTAGAACACTaGGGCCAGAGCCTGACCTTGGTGAATTGGTGTACA +
Preference number: 6 (lower is better)
Translates to: PRPAGESWDLEH*GQSLTLVNWCT
Trigger: TGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAGGTCCCAGCTCTCCCCAGCAGGCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CAA 90 bp GGCGGGAGGCGCCGCCAGCGATGCACTGTTTCGAAGGGTCCAAAGTaGAGCGTCAGGTACTCGACACTGTCTGAGCAGCTGTGGTCAAAG +
Preference number: 6 (lower is better)
Translates to: GGRRRQRCTVSKGPK*SVRYSTLSEQLWSK
Trigger: CTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAACAGTGCATCGCTGGCGGCGCCTCCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS TCA 72 bp ATGTCTTGGATCAGAGATGTGCCAATGTCCACAGGCTaGTCGGAGGGTGTGCGAGGGGGCGGCTGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: MSWIRDVPMSTG*SEGVRGGGCCF
Trigger: GAAGCAGCAGCCGCCCCCTCGCACACCCTCCGATCAGCCTGTGGACATTGGCACATCTCTGATCCAAGACAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231307.2
CDS GCA 72 bp CATAGATGGCATCCTTATATGCCACGACTGTGTGCTTaGTGCGCCGGGCGCCCACGAATTCGTCACAGGGCG +
Preference number: 6 (lower is better)
Translates to: HRWHPYMPRLCA*CAGRPRIRHRA
Trigger: CGCCCTGTGACGAATTCGTGGGCGCCCGGCGCAGCAAGCACACAGTCGTGGCATATAAGGATGCCATCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 72 bp GAAACCAGACGACCAGGGTGGGCAGAAGAGTCCTCTTaGGGTCTAGCCTGCTCAGGCCTAGGTTGTCTGAGG +
Preference number: 6 (lower is better)
Translates to: ETRRPGWAEESS*GLACSGLGCLR
Trigger: CCTCAGACAACCTAGGCCTGAGCAGGCTAGACCCCAAGAGGACTCTTCTGCCCACCCTGGTCGTCTGGTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CAA 72 bp CTGGGCCACCTCCTCCCAGCATGTGAGCTCTCGGTCTaGGAGGCCAATTGTCCACATGTCGTTCAACCTGGC +
Preference number: 6 (lower is better)
Translates to: LGHLLPACELSV*EANCPHVVQPG
Trigger: GCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGTGGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000232372.2
CDS CAA 90 bp CTCACCACTCTGGGCCACCTCCTCCCAGCATGTGAGCTCTCGGTCTaGGAGGCCAATTGTCCACATGTCGTTCAACCTGGCATTGCCATC +
Preference number: 6 (lower is better)
Translates to: LTTLGHLLPACELSV*EANCPHVVQPGIAI
Trigger: GATGGCAATGCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGTGGCCCAGAGTGGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000232372.2
CDS TCA 72 bp GGGTCCAAAGTTGAGCGTCAGGTACTCGACACTGTCTaGGCAGCTGTGGTCAAAGTCCACGCTCGGAGCCAC +
Preference number: 6 (lower is better)
Translates to: GSKVERQVLDTV*AAVVKVHARSH
Trigger: GTGGCTCCGAGCGTGGACTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS TCA 72 bp GGATCTCACCACTCTGGGCCACCTCCTCCCAGCATGTaGGCTCTCGGTCTTGGAGGCCAATTGTCCACATGT +
Preference number: 6 (lower is better)
Translates to: GSHHSGPPPPSM*ALGLGGQLSTC
Trigger: ACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGTGGCCCAGAGTGGTGAGATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000232372.2
CDS CCA 72 bp TTGAGCGTCAGGTACTCGACACTGTCTGAGCAGCTGTaGTCAAAGTCCACGCTCGGAGCCACCTTGGAGCGT +
Preference number: 6 (lower is better)
Translates to: LSVRYSTLSEQL*SKSTLGATLER
Trigger: ACGCTCCAAGGTGGCTCCGAGCGTGGACTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CCA 72 bp TGGGCCACCTCCTCCCAGCATGTGAGCTCTCGGTCTTaGAGGCCAATTGTCCACATGTCGTTCAACCTGGCA +
Preference number: 6 (lower is better)
Translates to: WATSSQHVSSRS*RPIVHMSFNLA
Trigger: TGCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGTGGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000232372.2
CDS CAA 72 bp CGCCGCCAGCGATGCACTGTTTCGAAGGGTCCAAAGTaGAGCGTCAGGTACTCGACACTGTCTGAGCAGCTG +
Preference number: 6 (lower is better)
Translates to: RRQRCTVSKGPK*SVRYSTLSEQL
Trigger: CAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAACAGTGCATCGCTGGCGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS TCA 72 bp GCCGCCAGCGATGCACTGTTTCGAAGGGTCCAAAGTTaGGCGTCAGGTACTCGACACTGTCTGAGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: AASDALFRRVQS*ASGTRHCLSSC
Trigger: ACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAACAGTGCATCGCTGGCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS GCA 72 bp GTTGTCTCCACCAAACACATAGATGGCATCCTTATATaGCACGACTGTGTGCTTGCTGCGCCGGGCGCCCAC +
Preference number: 6 (lower is better)
Translates to: VVSTKHIDGILI*HDCVLAAPGAH
Trigger: GTGGGCGCCCGGCGCAGCAAGCACACAGTCGTGGCATATAAGGATGCCATCTATGTGTTTGGTGGAGACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
CDS CAA 90 bp GCTGGGGAGAGCTGGGACCTAGAACACTGGGGCCAGAGCCTGACCTaGGTGAATTGGTGTACAATGATGTGCAAACAGTGCCGCTTCATG +
Preference number: 6 (lower is better)
Translates to: AGESWDLEHWGQSLT*VNWCTMMCKQCRFM
Trigger: CATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAGGTCCCAGCTCTCCCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS TCA 72 bp CAACCGCAGCGTGGGCAGCTTAGAGACCTGCACAGATaGCCAAAACTAGATGAAACCAGACGACCAGGGTGG +
Preference number: 6 (lower is better)
Translates to: QPQRGQLRDLHR*PKLDETRRPGW
Trigger: CCACCCTGGTCGTCTGGTTTCATCTAGTTTTGGTCATCTGTGCAGGTCTCTAAGCTGCCCACGCTGCGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS TCA 72 bp CAAGGCCTGAGGCTACACTATCCTCCTCCCAGCATGTaGGCTCTCGGTCTTGGAGGCCAATTGTCCACATGT +
Preference number: 6 (lower is better)
Translates to: QGLRLHYPPPSM*ALGLGGQLSTC
Trigger: ACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGATAGTGTAGCCTCAGGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS GCA 72 bp CCTCCAGGTAAGCCTTCATGTCTTGGATCAGAGATGTaGCAATGTCCACAGGCTGATCGGAGGGTGTGCGAG +
Preference number: 6 (lower is better)
Translates to: PPGKPSCLGSEM*QCPQADRRVCE
Trigger: CTCGCACACCCTCCGATCAGCCTGTGGACATTGGCACATCTCTGATCCAAGACATGAAGGCTTACCTGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231307.2
CDS CAA 90 bp GAGCTGGGACCTAGAACACTGGGGCCAGAGCCTGACCTTGGTGAATaGGTGTACAATGATGTGCAAACAGTGCCGCTTCATGTCCAGTGC +
Preference number: 6 (lower is better)
Translates to: ELGPRTLGPEPDLGE*VYNDVQTVPLHVQC
Trigger: GCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAGGTCCCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS TCA 72 bp CTGCAAACAGGTAGAGCGAGTCCTCAGGGGGCATGTTaGCCTCGCCATAGTAGATGTAGCGTAGCATGGACT +
Preference number: 6 (lower is better)
Translates to: LQTGRASPQGAC*PRHSRCSVAWT
Trigger: AGTCCATGCTACGCTACATCTACTATGGCGAGGTCAACATGCCCCCTGAGGACTCGCTCTACCTGTTTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231307.2
CDS CCA 72 bp ACACTATCCTCCTCCCAGCATGTGAGCTCTCGGTCTTaGAGGCCAATTGTCCACATGTCGTTCAACCTGGCA +
Preference number: 6 (lower is better)
Translates to: TLSSSQHVSSRS*RPIVHMSFNLA
Trigger: TGCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGATAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS CAA 72 bp TACACTATCCTCCTCCCAGCATGTGAGCTCTCGGTCTaGGAGGCCAATTGTCCACATGTCGTTCAACCTGGC +
Preference number: 6 (lower is better)
Translates to: YTILLPACELSV*EANCPHVVQPG
Trigger: GCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACATGCTGGGAGGAGGATAGTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231994.2
CDS GCA 72 bp CAGTCGGTTATTGTAGAAGCCGTAATAGTACGGGGCTaGAAACAGGTAGAGCGAGTCCTCAGGGGGCATGTT +
Preference number: 6 (lower is better)
Translates to: QSVIVEAVIVRG*KQVERVLRGHV
Trigger: AACATGCCCCCTGAGGACTCGCTCTACCTGTTTGCAGCCCCGTACTATTACGGCTTCTACAATAACCGACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231307.2
CDS GCA 72 bp CAGAGCCTGACCTTGGTGAATTGGTGTACAATGATGTaGAAACAGTGCCGCTTCATGTCCAGTGCCTGCGTC +
Preference number: 6 (lower is better)
Translates to: QSLTLVNWCTMM*KQCRFMSSACV
Trigger: GACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CAA 72 bp AGCTGGGACCTAGAACACTGGGGCCAGAGCCTGACCTaGGTGAATTGGTGTACAATGATGTGCAAACAGTGC +
Preference number: 6 (lower is better)
Translates to: SWDLEHWGQSLT*VNWCTMMCKQC
Trigger: GCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAGGTCCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS GCA 72 bp AAATATCTCCAGTATAGCCCCCAAAGACGAACATGCTaGTCCCATAGACCACAGCAGAGTGGTGGTAACGGG +
Preference number: 6 (lower is better)
Translates to: KYLQYSPQRRTC*SHRPQQSGGNG
Trigger: CCCGTTACCACCACTCTGCTGTGGTCTATGGGAGCAGCATGTTCGTCTTTGGGGGCTATACTGGAGATATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000023444.11
ENSMUST00000231292.2
ENSMUST00000231994.2
ENSMUST00000232242.2
ENSMUST00000232372.2
CDS CCA 72 bp CTAGAACACTGGGGCCAGAGCCTGACCTTGGTGAATTaGTGTACAATGATGTGCAAACAGTGCCGCTTCATG +
Preference number: 6 (lower is better)
Translates to: LEHWGQSLTLVN*CTMMCKQCRFM
Trigger: CATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CAA 72 bp CCTAGAACACTGGGGCCAGAGCCTGACCTTGGTGAATaGGTGTACAATGATGTGCAAACAGTGCCGCTTCAT +
Preference number: 6 (lower is better)
Translates to: PRTLGPEPDLGE*VYNDVQTVPLH
Trigger: ATGAAGCGGCACTGTTTGCACATCATTGTACACCAATTCACCAAGGTCAGGCTCTGGCCCCAGTGTTCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231307.2
CDS CAA 72 bp CAGGAGCAATCCTTCACATCGAAACGCAGAAGATCATaGAGCATCGTCTTTCCGTTGTCTCCACCAAACACA +
Preference number: 6 (lower is better)
Translates to: QEQSFTSKRRRS*SIVFPLSPPNT
Trigger: TGTGTTTGGTGGAGACAACGGAAAGACGATGCTCAATGATCTTCTGCGTTTCGATGTGAAGGATTGCTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2
CDS TCA 72 bp AGGAGCAATCCTTCACATCGAAACGCAGAAGATCATTaGGCATCGTCTTTCCGTTGTCTCCACCAAACACAT +
Preference number: 6 (lower is better)
Translates to: RSNPSHRNAEDH*ASSFRCLHQTH
Trigger: ATGTGTTTGGTGGAGACAACGGAAAGACGATGCTCAATGATCTTCTGCGTTTCGATGTGAAGGATTGCTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023444.11
ENSMUST00000231994.2