RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LZIC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028990

Ensembl transcript IDs: ENSMUST00000030842.8, ENSMUST00000124413.8, ENSMUST00000141293.8

Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACAAAACGAATCATAGTGAACAATGTCCCTCTGTCCAACAAGCCTaGGGTCACGTAAGAAGGGAGATCCACAGAGAGAGGGACGAGGAC +
Preference number: 1 (lower is better)
Translates to: NKTNHSEQCPSVQQA*GHVRREIHRERDED
Trigger: GTCCTCGTCCCTCTCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACATTGTTCACTATGATTCGTTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CCA 90 bp AGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTaGTTTCCTTGTATAAAAACTGAAAAGATTCTCCAGCCACAGGAG +
Preference number: 1 (lower is better)
Translates to: SSASNVTLDITSAKS*FPCIKTEKILQPQE
Trigger: CTCCTGTGGCTGGAGAATCTTTTCAGTTTTTATACAAGGAAACCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR-3UTR TCA 90 bp AGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACAGCTTTGTGTGGCCTaGGTCCTCAGGATGGAAGCA +
Preference number: 2 (lower is better)
Translates to: RARDITAVHPKACRQRSGQLCVA*VLRMEA
Trigger: TGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTG...TCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CAA 90 bp CACCTGTTCCTGGGCTGTTGCTGCATTGTGAGAGTCTCTACAGCTTaGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAGGAGG +
Preference number: 2 (lower is better)
Translates to: HLFLGCCCIVRVSTA*CGLSPQDGSTVCRR
Trigger: CCTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR-3UTR CCA 90 bp GGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACAGTCTTCCTGAGTCCTCAGGATaGAAGCACCGTGTGCAGGAG +
Preference number: 2 (lower is better)
Translates to: GTSLLSIPRHADRGQDSLPESSG*KHRVQE
Trigger: CTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGG...AAGACTGTCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR-3UTR CCA 90 bp AGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACTCTACAGCTTTGTGTaGCCTGAGTCCTCAGGATGG +
Preference number: 2 (lower is better)
Translates to: RARDITAVHPKACRQRSGLYSFV*PESSGW
Trigger: CCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAG...TCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR-3UTR TCA 90 bp ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGCTGTTGCTGCATTGTaGGAGTCTCTACAGCTTTGT +
Preference number: 2 (lower is better)
Translates to: MSLCPTSLGSRKKGDPQRAVAAL*ESLQLC
Trigger: ACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR-3UTR GCA 90 bp TCCCAAGGCATGCAGACAGAGGTCAGGACAGTCTTAGCTCATAGCTCTCACACCTTCCTGGGCTGTTGCTaGATTGTGAGAGTCTCTACA +
Preference number: 2 (lower is better)
Translates to: SQGMQTEVRTVLAHSSHTFLGCC*IVRVST
Trigger: TGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAA...GGTGTGAGAGCTATGAGCTAAGACTGTCCTGACCTCTGTCTGCATGCCTTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CCA 72 bp AGTCTCTACAGCTTTGTGTGGCCTGAGTCCTCAGGATaGAAGCACCGTGTGCAGGAGGGGTGGGGCCGGCAG +
Preference number: 3 (lower is better)
Translates to: SLYSFVWPESSG*KHRVQEGWGRQ
Trigger: CTGCCGGCCCCACCCCTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR GCA 72 bp AAGATTCTCCAGCCACAGGAGGGCCAGGGACATCACTaGTGTCCATCCCAAGGCATGCAGACAGAGGTCAGG +
Preference number: 3 (lower is better)
Translates to: KILQPQEGQGHH*CPSQGMQTEVR
Trigger: CCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCTCCTGTGGCTGGAGAATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CCA 72 bp CTGTTGCTGCATTGTGAGAGTCTCTACAGCTTTGTGTaGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAG +
Preference number: 3 (lower is better)
Translates to: LLLHCESLYSFV*PESSGWKHRVQ
Trigger: CTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR GCA 72 bp CACTGTGTTCCAAGTCACCTGTTCCTGGGCTGTTGCTaGATTGTGAGAGTCTCTACAGCTTTGTGTGGCCTG +
Preference number: 3 (lower is better)
Translates to: HCVPSHLFLGCC*IVRVSTALCGL
Trigger: CAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTGACTTGGAACACAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR GCA 72 bp CCACACTGTGTTCCAAGTCACCTGTTCCTGGGCTGTTaGTGCATTGTGAGAGTCTCTACAGCTTTGTGTGGC +
Preference number: 3 (lower is better)
Translates to: PHCVPSHLFLGC*CIVRVSTALCG
Trigger: GCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTGACTTGGAACACAGTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CCA 72 bp AATCATAGTGAACAATGTCCCTCTGTCCAACAAGCCTaGGGTCACGTAAGAAGGGAGATCCACAGAGAGAGG +
Preference number: 3 (lower is better)
Translates to: NHSEQCPSVQQA*GHVRREIHRER
Trigger: CCTCTCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACATTGTTCACTATGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR GCA 90 bp CTCCAGCCACAGGAGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGTTCAACATCGAACCCTaGCAGAGCAAGGACCTTGTC +
Preference number: 4 (lower is better)
Translates to: LQPQEGQGHHCCPSQGMQFNIEP*QSKDLV
Trigger: GACAAGGTCCTTGCTCTGGCAGGGTTCGATGTTGAA...CTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCTCCTGTGGCTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR GCA 90 bp ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGGCCTGGCTGATGGCTaGCTGGATGGCCAGTTGCAT +
Preference number: 4 (lower is better)
Translates to: MSLCPTSLGSRKKGDPQRGLADG*LDGQLH
Trigger: ATGCAACTGGCCATCCAGGCAGCCATCAGCCAGGCC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CCA 90 bp GGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACAGTCTTTGGCTGATGGCTGCCTaGATGGCCAGTTGCATCCCA +
Preference number: 4 (lower is better)
Translates to: GTSLLSIPRHADRGQDSLWLMAA*MASCIP
Trigger: TGGGATGCAACTGGCCATCCAGGCAGCCATCAGCCA...AAGACTGTCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CAA 72 bp CTGGGCTGTTGCTGCATTGTGAGAGTCTCTACAGCTTaGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTG +
Preference number: 4 (lower is better)
Translates to: LGCCCIVRVSTA*CGLSPQDGSTV
Trigger: CACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR TCA 90 bp AGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACCAGTTGCATCCCACTaGGTTCATCTACCAAAGTCA +
Preference number: 4 (lower is better)
Translates to: RARDITAVHPKACRQRSGPVASH*VHLPKS
Trigger: TGACTTTGGTAGATGAACTCAGTGGGATGCAACTGG...TCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CCA 90 bp CTCTACAGCTTTGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAGGAGAGCCTTGTCCGAAGTTaGCCTGGTTGTTTCTTCGCA +
Preference number: 4 (lower is better)
Translates to: LYSFVWPESSGWKHRVQESLVRS*PGCFFA
Trigger: TGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCT...CTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CCA 90 bp ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGGAGTTTTAAAGGCCTaGCTGATGGCTGCCTGGATG +
Preference number: 4 (lower is better)
Translates to: MSLCPTSLGSRKKGDPQRGVLKA*LMAAWM
Trigger: CATCCAGGCAGCCATCAGCCAGGCCTTTAAAACTCC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
3UTR CAA 72 bp GCCACACTGTGTTCCAAGTCACCTGTTCCTGGGCTGTaGCTGCATTGTGAGAGTCTCTACAGCTTTGTGTGG +
Preference number: 4 (lower is better)
Translates to: ATLCSKSPVPGL*LHCESLYSFVW
Trigger: CCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTGACTTGGAACACAGTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR TCA 90 bp ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGACTTTTTCAAACTGGCTaGGCACAGCACTTGCATTGG +
Preference number: 4 (lower is better)
Translates to: MSLCPTSLGSRKKGDPQRLFQTG*AQHLHW
Trigger: CCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAG...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR TCA 90 bp CTCTACAGCTTTGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAGGAGCAAAGTCATATTTCCTaGCATAATCTTCTTCAGCGA +
Preference number: 4 (lower is better)
Translates to: LYSFVWPESSGWKHRVQEQSHIS*HNLLQR
Trigger: TCGCTGAAGAAGATTATGTCAGGAAATATGACTTTG...CTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CCA 90 bp GTACAGAATAAAGAAGTAAAACTTGGATTCAGGACACCTGAGCCCCAGCCTCAGCAGAGCCAAGCTCTGTaGAGACTTTTTCAAACTGGC +
Preference number: 4 (lower is better)
Translates to: VQNKEVKLGFRTPEPQPQQSQAL*RLFQTG
Trigger: GCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTG...CTGAGGCTGGGGCTCAGGTGTCCTGAATCCAAGTTTTACTTCTTTATTCTGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR GCA 90 bp AACAAAACGAATCATAGTGAACAATGTCCCTCTGTCCAACAAGCCTGGGGTCACAGGTCTTGTAACTGCTaGATCAGTCTATCCAACTGC +
Preference number: 4 (lower is better)
Translates to: NKTNHSEQCPSVQQAWGHRSCNC*ISLSNC
Trigger: GCAGTTGGATAGACTGATGCAGCAGTTACAAGACCT...GTGACCCCAGGCTTGTTGGACAGAGGGACATTGTTCACTATGATTCGTTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR GCA 90 bp AGCCTCAGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTGGTCCAGGTCTTGTAACTaGTGCATCAGTCTATCCAAC +
Preference number: 4 (lower is better)
Translates to: SLSSASNVTLDITSAKSWSRSCN*CISLSN
Trigger: GTTGGATAGACTGATGCAGCAGTTACAAGACCTGGA...CCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCTGAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CCA 90 bp AGCCTCAGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTGGGAGACTTTTTCAAACTaGCTGAGCACAGCACTTGCA +
Preference number: 4 (lower is better)
Translates to: SLSSASNVTLDITSAKSWETFSN*LSTALA
Trigger: TGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTC...CCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCTGAGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR GCA 90 bp AGCCTCAGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTGGAATTCTGCTTTAGTTTaGTTGTCTCTGTCTTTCCTC +
Preference number: 4 (lower is better)
Translates to: SLSSASNVTLDITSAKSWNSALV*LSLSFL
Trigger: GAGGAAAGACAGAGACAAGCAAACTAAAGCAGAATT...CCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCTGAGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CAA 90 bp CTCCAGCCACAGGAGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGAGCACAGCACTTGCATaGGCTGACAGGAAGGTCTCA +
Preference number: 5 (lower is better)
Translates to: LQPQEGQGHHCCPSQGMQSTALA*ADRKVS
Trigger: TGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCT...CTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCTCCTGTGGCTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CAA 90 bp ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGCCAGAGCAAGGACCTaGTCTCCAGAGCCAAGCTCT +
Preference number: 5 (lower is better)
Translates to: MSLCPTSLGSRKKGDPQRARART*SPEPSS
Trigger: AGAGCTTGGCTCTGGAGACAAGGTCCTTGCTCTGGC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 90 bp ACAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCGAGTTTCCTaGGTGCTGTCAGTATCTCCACCTTCCGCTGGGTATACAGCTCTC +
Preference number: 5 (lower is better)
Translates to: TGRSHRLLSASLRVS*VLSVSPPSAGYTAL
Trigger: GAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CCA 90 bp TTCTCTCCGAGTTTCCTGAGTGCTGTCAGTATCTCCACCTTCCGCTaGGTATACAGCTCTCTTTCCAGCTTCCCCACCATCAGATCTCTG +
Preference number: 5 (lower is better)
Translates to: FSPSFLSAVSISTFR*VYSSLSSFPTIRSL
Trigger: CAGAGATCTGATGGTGGGGAAGCTGGAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CCA 90 bp AGGACCTTGTCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTaGCTGAGCACAGCACTTGCATTGGCTGACAGGAAGGTCTCATCG +
Preference number: 5 (lower is better)
Translates to: RTLSPEPSSVETFSN*LSTALALADRKVSS
Trigger: CGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGGTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 90 bp CCTTGTCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTGGCTaGGCACAGCACTTGCATTGGCTGACAGGAAGGTCTCATCGTCTT +
Preference number: 5 (lower is better)
Translates to: PCLQSQALWRLFQTG*AQHLHWLTGRSHRL
Trigger: AAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS GCA 90 bp GAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCGAGTTTCCTGAGTaGTGTCAGTATCTCCACCTTCCGCTGGGTATACAGCTCTCTTTC +
Preference number: 5 (lower is better)
Translates to: EGLIVFCQLLSEFPE*CQYLHLPLGIQLSF
Trigger: GAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS-3UTR CAA 90 bp ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGACCGAAGTTGGCCTGGTaGTTTCTTCGCAAACAATCT +
Preference number: 5 (lower is better)
Translates to: MSLCPTSLGSRKKGDPQRPKLAW*FLRKQS
Trigger: AGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGG...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CCA 90 bp CCCACCATCAGATCTCTGTCCATCTCGGCTAGCCTTGTCCGAAGTTaGCCTGGTTGTTTCTTCGCAAACAATCTGATGACTTCAGGAGTT +
Preference number: 5 (lower is better)
Translates to: PTIRSLSISASLVRS*PGCFFANNLMTSGV
Trigger: AACTCCTGAAGTCATCAGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCTGATGGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 90 bp TGTGGAGACTTTTTCAAACTGGCTGAGCACAGCACTTGCATTGGCTaGCAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCGAGTTT +
Preference number: 5 (lower is better)
Translates to: CGDFFKLAEHSTCIG*QEGLIVFCQLLSEF
Trigger: AAACTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 90 bp GGCCAGTTGCATCCCACTGAGTTCATCTACCAAAGTCATATTTCCTaGCATAATCTTCTTCAGCGAATCGTTGAACTCACTCAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: GQLHPTEFIYQSHIS*HNLLQRIVELTQLL
Trigger: GAGCAGCTGAGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAATATGACTTTGGTAGATGAACTCAGTGGGATGCAACTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS GCA 90 bp TTTCCTGACATAATCTTCTTCAGCGAATCGTTGAACTCACTCAGCTaGTCCAAAGTTTCCTTTTTAGTTTCTTCATATTCATCCGCATCG +
Preference number: 5 (lower is better)
Translates to: FPDIIFFSESLNSLS*SKVSFLVSSYSSAS
Trigger: CGATGCGGATGAATATGAAGAAACTAAAAAGGAAACTTTGGAGCAGCTGAGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CCA 72 bp AGTTTCCTGAGTGCTGTCAGTATCTCCACCTTCCGCTaGGTATACAGCTCTCTTTCCAGCTTCCCCACCATC +
Preference number: 6 (lower is better)
Translates to: SFLSAVSISTFR*VYSSLSSFPTI
Trigger: GATGGTGGGGAAGCTGGAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CAA 72 bp TCCCCACCATCAGATCTCTGTCCATCTCGGCTAGCCTaGTCCGAAGTTGGCCTGGTTGTTTCTTCGCAAACA +
Preference number: 6 (lower is better)
Translates to: SPPSDLCPSRLA*SEVGLVVSSQT
Trigger: TGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCTGATGGTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CAA 90 bp AGCTCTGTGGAGACTTTTTCAAACTGGCTGAGCACAGCACTTGCATaGGCTGACAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCG +
Preference number: 6 (lower is better)
Translates to: SSVETFSNWLSTALA*ADRKVSSSSVSFSP
Trigger: CGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 72 bp CAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTGGCTaGGCACAGCACTTGCATTGGCTGACAGGAAGGTCT +
Preference number: 6 (lower is better)
Translates to: QSQALWRLFQTG*AQHLHWLTGRS
Trigger: AGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS GCA 72 bp ATCGTCTTCTGTCAGCTTCTCTCCGAGTTTCCTGAGTaGTGTCAGTATCTCCACCTTCCGCTGGGTATACAG +
Preference number: 6 (lower is better)
Translates to: IVFCQLLSEFPE*CQYLHLPLGIQ
Trigger: CTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAAGCTGACAGAAGACGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CCA 72 bp TCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTaGCTGAGCACAGCACTTGCATTGGCTGACAGGAAG +
Preference number: 6 (lower is better)
Translates to: SPEPSSVETFSN*LSTALALADRK
Trigger: CTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CAA 72 bp GAGACTTTTTCAAACTGGCTGAGCACAGCACTTGCATaGGCTGACAGGAAGGTCTCATCGTCTTCTGTCAGC +
Preference number: 6 (lower is better)
Translates to: ETFSNWLSTALA*ADRKVSSSSVS
Trigger: GCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS CAA 72 bp GCTTTTTCAACATCGAACCCTGCCAGAGCAAGGACCTaGTCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCA +
Preference number: 6 (lower is better)
Translates to: AFSTSNPARART*SPEPSSVETFS
Trigger: TGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGGTCCTTGCTCTGGCAGGGTTCGATGTTGAAAAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 72 bp TTTTTCAAACTGGCTGAGCACAGCACTTGCATTGGCTaGCAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTC +
Preference number: 6 (lower is better)
Translates to: FFKLAEHSTCIG*QEGLIVFCQLL
Trigger: GAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS GCA 72 bp AGCTCCTCCCTGCATTCCTCCAGGTCTTGTAACTGCTaGATCAGTCTATCCAACTGCTCTTCTAAATTCTGC +
Preference number: 6 (lower is better)
Translates to: SSSLHSSRSCNC*ISLSNCSSKFC
Trigger: GCAGAATTTAGAAGAGCAGTTGGATAGACTGATGCAGCAGTTACAAGACCTGGAGGAATGCAGGGAGGAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030842.8
ENSMUST00000124413.8
ENSMUST00000141293.8
CDS GCA 72 bp TCGAGCTCCTCCCTGCATTCCTCCAGGTCTTGTAACTaGTGCATCAGTCTATCCAACTGCTCTTCTAAATTC +
Preference number: 6 (lower is better)
Translates to: SSSSLHSSRSCN*CISLSNCSSKF
Trigger: GAATTTAGAAGAGCAGTTGGATAGACTGATGCAGCAGTTACAAGACCTGGAGGAATGCAGGGAGGAGCTCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000030842.8
ENSMUST00000124413.8
ENSMUST00000141293.8
CDS CCA 72 bp AGATCTCTGTCCATCTCGGCTAGCCTTGTCCGAAGTTaGCCTGGTTGTTTCTTCGCAAACAATCTGATGACT +
Preference number: 6 (lower is better)
Translates to: RSLSISASLVRS*PGCFFANNLMT
Trigger: AGTCATCAGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8
CDS TCA 72 bp CATCCCACTGAGTTCATCTACCAAAGTCATATTTCCTaGCATAATCTTCTTCAGCGAATCGTTGAACTCACT +
Preference number: 6 (lower is better)
Translates to: HPTEFIYQSHIS*HNLLQRIVELT
Trigger: AGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAATATGACTTTGGTAGATGAACTCAGTGGGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030842.8