Pregenerated sensors for LZIC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028990Ensembl transcript IDs: ENSMUST00000030842.8, ENSMUST00000124413.8, ENSMUST00000141293.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AACAAAACGAATCATAGTGAACAATGTCCCTCTGTCCAACAAGCCTaGGGTCACGTAAGAAGGGAGATCCACAGAGAGAGGGACGAGGAC | + |
Preference number: 1 (lower is better) Translates to: NKTNHSEQCPSVQQA*GHVRREIHRERDED Trigger: GTCCTCGTCCCTCTCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACATTGTTCACTATGATTCGTTTTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CCA 90 bp | AGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTaGTTTCCTTGTATAAAAACTGAAAAGATTCTCCAGCCACAGGAG | + |
Preference number: 1 (lower is better) Translates to: SSASNVTLDITSAKS*FPCIKTEKILQPQE Trigger: CTCCTGTGGCTGGAGAATCTTTTCAGTTTTTATACAAGGAAACCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR-3UTR TCA 90 bp | AGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACAGCTTTGTGTGGCCTaGGTCCTCAGGATGGAAGCA | + |
Preference number: 2 (lower is better) Translates to: RARDITAVHPKACRQRSGQLCVA*VLRMEA Trigger: TGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTG...TCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CAA 90 bp | CACCTGTTCCTGGGCTGTTGCTGCATTGTGAGAGTCTCTACAGCTTaGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAGGAGG | + |
Preference number: 2 (lower is better) Translates to: HLFLGCCCIVRVSTA*CGLSPQDGSTVCRR Trigger: CCTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR-3UTR CCA 90 bp | GGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACAGTCTTCCTGAGTCCTCAGGATaGAAGCACCGTGTGCAGGAG | + |
Preference number: 2 (lower is better) Translates to: GTSLLSIPRHADRGQDSLPESSG*KHRVQE Trigger: CTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGG...AAGACTGTCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR-3UTR CCA 90 bp | AGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACTCTACAGCTTTGTGTaGCCTGAGTCCTCAGGATGG | + |
Preference number: 2 (lower is better) Translates to: RARDITAVHPKACRQRSGLYSFV*PESSGW Trigger: CCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAG...TCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR-3UTR TCA 90 bp | ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGCTGTTGCTGCATTGTaGGAGTCTCTACAGCTTTGT | + |
Preference number: 2 (lower is better) Translates to: MSLCPTSLGSRKKGDPQRAVAAL*ESLQLC Trigger: ACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR-3UTR GCA 90 bp | TCCCAAGGCATGCAGACAGAGGTCAGGACAGTCTTAGCTCATAGCTCTCACACCTTCCTGGGCTGTTGCTaGATTGTGAGAGTCTCTACA | + |
Preference number: 2 (lower is better) Translates to: SQGMQTEVRTVLAHSSHTFLGCC*IVRVST Trigger: TGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAA...GGTGTGAGAGCTATGAGCTAAGACTGTCCTGACCTCTGTCTGCATGCCTTGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CCA 72 bp | AGTCTCTACAGCTTTGTGTGGCCTGAGTCCTCAGGATaGAAGCACCGTGTGCAGGAGGGGTGGGGCCGGCAG | + |
Preference number: 3 (lower is better) Translates to: SLYSFVWPESSG*KHRVQEGWGRQ Trigger: CTGCCGGCCCCACCCCTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR GCA 72 bp | AAGATTCTCCAGCCACAGGAGGGCCAGGGACATCACTaGTGTCCATCCCAAGGCATGCAGACAGAGGTCAGG | + |
Preference number: 3 (lower is better) Translates to: KILQPQEGQGHH*CPSQGMQTEVR Trigger: CCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCTCCTGTGGCTGGAGAATCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CCA 72 bp | CTGTTGCTGCATTGTGAGAGTCTCTACAGCTTTGTGTaGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAG | + |
Preference number: 3 (lower is better) Translates to: LLLHCESLYSFV*PESSGWKHRVQ Trigger: CTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR GCA 72 bp | CACTGTGTTCCAAGTCACCTGTTCCTGGGCTGTTGCTaGATTGTGAGAGTCTCTACAGCTTTGTGTGGCCTG | + |
Preference number: 3 (lower is better) Translates to: HCVPSHLFLGCC*IVRVSTALCGL Trigger: CAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTGACTTGGAACACAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR GCA 72 bp | CCACACTGTGTTCCAAGTCACCTGTTCCTGGGCTGTTaGTGCATTGTGAGAGTCTCTACAGCTTTGTGTGGC | + |
Preference number: 3 (lower is better) Translates to: PHCVPSHLFLGC*CIVRVSTALCG Trigger: GCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTGACTTGGAACACAGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CCA 72 bp | AATCATAGTGAACAATGTCCCTCTGTCCAACAAGCCTaGGGTCACGTAAGAAGGGAGATCCACAGAGAGAGG | + |
Preference number: 3 (lower is better) Translates to: NHSEQCPSVQQA*GHVRREIHRER Trigger: CCTCTCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACATTGTTCACTATGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR GCA 90 bp | CTCCAGCCACAGGAGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGTTCAACATCGAACCCTaGCAGAGCAAGGACCTTGTC | + |
Preference number: 4 (lower is better) Translates to: LQPQEGQGHHCCPSQGMQFNIEP*QSKDLV Trigger: GACAAGGTCCTTGCTCTGGCAGGGTTCGATGTTGAA...CTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCTCCTGTGGCTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR GCA 90 bp | ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGGCCTGGCTGATGGCTaGCTGGATGGCCAGTTGCAT | + |
Preference number: 4 (lower is better) Translates to: MSLCPTSLGSRKKGDPQRGLADG*LDGQLH Trigger: ATGCAACTGGCCATCCAGGCAGCCATCAGCCAGGCC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CCA 90 bp | GGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACAGTCTTTGGCTGATGGCTGCCTaGATGGCCAGTTGCATCCCA | + |
Preference number: 4 (lower is better) Translates to: GTSLLSIPRHADRGQDSLWLMAA*MASCIP Trigger: TGGGATGCAACTGGCCATCCAGGCAGCCATCAGCCA...AAGACTGTCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CAA 72 bp | CTGGGCTGTTGCTGCATTGTGAGAGTCTCTACAGCTTaGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTG | + |
Preference number: 4 (lower is better) Translates to: LGCCCIVRVSTA*CGLSPQDGSTV Trigger: CACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR TCA 90 bp | AGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGACAGAGGTCAGGACCAGTTGCATCCCACTaGGTTCATCTACCAAAGTCA | + |
Preference number: 4 (lower is better) Translates to: RARDITAVHPKACRQRSGPVASH*VHLPKS Trigger: TGACTTTGGTAGATGAACTCAGTGGGATGCAACTGG...TCCTGACCTCTGTCTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CCA 90 bp | CTCTACAGCTTTGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAGGAGAGCCTTGTCCGAAGTTaGCCTGGTTGTTTCTTCGCA | + |
Preference number: 4 (lower is better) Translates to: LYSFVWPESSGWKHRVQESLVRS*PGCFFA Trigger: TGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCT...CTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CCA 90 bp | ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGGAGTTTTAAAGGCCTaGCTGATGGCTGCCTGGATG | + |
Preference number: 4 (lower is better) Translates to: MSLCPTSLGSRKKGDPQRGVLKA*LMAAWM Trigger: CATCCAGGCAGCCATCAGCCAGGCCTTTAAAACTCC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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3UTR CAA 72 bp | GCCACACTGTGTTCCAAGTCACCTGTTCCTGGGCTGTaGCTGCATTGTGAGAGTCTCTACAGCTTTGTGTGG | + |
Preference number: 4 (lower is better) Translates to: ATLCSKSPVPGL*LHCESLYSFVW Trigger: CCACACAAAGCTGTAGAGACTCTCACAATGCAGCAACAGCCCAGGAACAGGTGACTTGGAACACAGTGTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR TCA 90 bp | ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGACTTTTTCAAACTGGCTaGGCACAGCACTTGCATTGG | + |
Preference number: 4 (lower is better) Translates to: MSLCPTSLGSRKKGDPQRLFQTG*AQHLHW Trigger: CCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAG...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR TCA 90 bp | CTCTACAGCTTTGTGTGGCCTGAGTCCTCAGGATGGAAGCACCGTGTGCAGGAGCAAAGTCATATTTCCTaGCATAATCTTCTTCAGCGA | + |
Preference number: 4 (lower is better) Translates to: LYSFVWPESSGWKHRVQEQSHIS*HNLLQR Trigger: TCGCTGAAGAAGATTATGTCAGGAAATATGACTTTG...CTCCTGCACACGGTGCTTCCATCCTGAGGACTCAGGCCACACAAAGCTGTAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CCA 90 bp | GTACAGAATAAAGAAGTAAAACTTGGATTCAGGACACCTGAGCCCCAGCCTCAGCAGAGCCAAGCTCTGTaGAGACTTTTTCAAACTGGC | + |
Preference number: 4 (lower is better) Translates to: VQNKEVKLGFRTPEPQPQQSQAL*RLFQTG Trigger: GCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTG...CTGAGGCTGGGGCTCAGGTGTCCTGAATCCAAGTTTTACTTCTTTATTCTGTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR GCA 90 bp | AACAAAACGAATCATAGTGAACAATGTCCCTCTGTCCAACAAGCCTGGGGTCACAGGTCTTGTAACTGCTaGATCAGTCTATCCAACTGC | + |
Preference number: 4 (lower is better) Translates to: NKTNHSEQCPSVQQAWGHRSCNC*ISLSNC Trigger: GCAGTTGGATAGACTGATGCAGCAGTTACAAGACCT...GTGACCCCAGGCTTGTTGGACAGAGGGACATTGTTCACTATGATTCGTTTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR GCA 90 bp | AGCCTCAGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTGGTCCAGGTCTTGTAACTaGTGCATCAGTCTATCCAAC | + |
Preference number: 4 (lower is better) Translates to: SLSSASNVTLDITSAKSWSRSCN*CISLSN Trigger: GTTGGATAGACTGATGCAGCAGTTACAAGACCTGGA...CCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCTGAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CCA 90 bp | AGCCTCAGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTGGGAGACTTTTTCAAACTaGCTGAGCACAGCACTTGCA | + |
Preference number: 4 (lower is better) Translates to: SLSSASNVTLDITSAKSWETFSN*LSTALA Trigger: TGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTC...CCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCTGAGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR GCA 90 bp | AGCCTCAGCTCTGCCTCTAATGTGACTTTAGACATCACAAGTGCTAAGTCTTGGAATTCTGCTTTAGTTTaGTTGTCTCTGTCTTTCCTC | + |
Preference number: 4 (lower is better) Translates to: SLSSASNVTLDITSAKSWNSALV*LSLSFL Trigger: GAGGAAAGACAGAGACAAGCAAACTAAAGCAGAATT...CCAAGACTTAGCACTTGTGATGTCTAAAGTCACATTAGAGGCAGAGCTGAGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CAA 90 bp | CTCCAGCCACAGGAGGGCCAGGGACATCACTGCTGTCCATCCCAAGGCATGCAGAGCACAGCACTTGCATaGGCTGACAGGAAGGTCTCA | + |
Preference number: 5 (lower is better) Translates to: LQPQEGQGHHCCPSQGMQSTALA*ADRKVS Trigger: TGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCT...CTGCATGCCTTGGGATGGACAGCAGTGATGTCCCTGGCCCTCCTGTGGCTGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CAA 90 bp | ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGAGCCAGAGCAAGGACCTaGTCTCCAGAGCCAAGCTCT | + |
Preference number: 5 (lower is better) Translates to: MSLCPTSLGSRKKGDPQRARART*SPEPSS Trigger: AGAGCTTGGCTCTGGAGACAAGGTCCTTGCTCTGGC...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 90 bp | ACAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCGAGTTTCCTaGGTGCTGTCAGTATCTCCACCTTCCGCTGGGTATACAGCTCTC | + |
Preference number: 5 (lower is better) Translates to: TGRSHRLLSASLRVS*VLSVSPPSAGYTAL Trigger: GAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CCA 90 bp | TTCTCTCCGAGTTTCCTGAGTGCTGTCAGTATCTCCACCTTCCGCTaGGTATACAGCTCTCTTTCCAGCTTCCCCACCATCAGATCTCTG | + |
Preference number: 5 (lower is better) Translates to: FSPSFLSAVSISTFR*VYSSLSSFPTIRSL Trigger: CAGAGATCTGATGGTGGGGAAGCTGGAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CCA 90 bp | AGGACCTTGTCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTaGCTGAGCACAGCACTTGCATTGGCTGACAGGAAGGTCTCATCG | + |
Preference number: 5 (lower is better) Translates to: RTLSPEPSSVETFSN*LSTALALADRKVSS Trigger: CGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGGTCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 90 bp | CCTTGTCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTGGCTaGGCACAGCACTTGCATTGGCTGACAGGAAGGTCTCATCGTCTT | + |
Preference number: 5 (lower is better) Translates to: PCLQSQALWRLFQTG*AQHLHWLTGRSHRL Trigger: AAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS GCA 90 bp | GAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCGAGTTTCCTGAGTaGTGTCAGTATCTCCACCTTCCGCTGGGTATACAGCTCTCTTTC | + |
Preference number: 5 (lower is better) Translates to: EGLIVFCQLLSEFPE*CQYLHLPLGIQLSF Trigger: GAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS-3UTR CAA 90 bp | ATGTCCCTCTGTCCAACAAGCCTGGGGTCACGTAAGAAGGGAGATCCACAGAGACCGAAGTTGGCCTGGTaGTTTCTTCGCAAACAATCT | + |
Preference number: 5 (lower is better) Translates to: MSLCPTSLGSRKKGDPQRPKLAW*FLRKQS Trigger: AGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGG...TCTCTGTGGATCTCCCTTCTTACGTGACCCCAGGCTTGTTGGACAGAGGGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CCA 90 bp | CCCACCATCAGATCTCTGTCCATCTCGGCTAGCCTTGTCCGAAGTTaGCCTGGTTGTTTCTTCGCAAACAATCTGATGACTTCAGGAGTT | + |
Preference number: 5 (lower is better) Translates to: PTIRSLSISASLVRS*PGCFFANNLMTSGV Trigger: AACTCCTGAAGTCATCAGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCTGATGGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 90 bp | TGTGGAGACTTTTTCAAACTGGCTGAGCACAGCACTTGCATTGGCTaGCAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCGAGTTT | + |
Preference number: 5 (lower is better) Translates to: CGDFFKLAEHSTCIG*QEGLIVFCQLLSEF Trigger: AAACTCGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 90 bp | GGCCAGTTGCATCCCACTGAGTTCATCTACCAAAGTCATATTTCCTaGCATAATCTTCTTCAGCGAATCGTTGAACTCACTCAGCTGCTC | + |
Preference number: 5 (lower is better) Translates to: GQLHPTEFIYQSHIS*HNLLQRIVELTQLL Trigger: GAGCAGCTGAGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAATATGACTTTGGTAGATGAACTCAGTGGGATGCAACTGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS GCA 90 bp | TTTCCTGACATAATCTTCTTCAGCGAATCGTTGAACTCACTCAGCTaGTCCAAAGTTTCCTTTTTAGTTTCTTCATATTCATCCGCATCG | + |
Preference number: 5 (lower is better) Translates to: FPDIIFFSESLNSLS*SKVSFLVSSYSSAS Trigger: CGATGCGGATGAATATGAAGAAACTAAAAAGGAAACTTTGGAGCAGCTGAGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CCA 72 bp | AGTTTCCTGAGTGCTGTCAGTATCTCCACCTTCCGCTaGGTATACAGCTCTCTTTCCAGCTTCCCCACCATC | + |
Preference number: 6 (lower is better) Translates to: SFLSAVSISTFR*VYSSLSSFPTI Trigger: GATGGTGGGGAAGCTGGAAAGAGAGCTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CAA 72 bp | TCCCCACCATCAGATCTCTGTCCATCTCGGCTAGCCTaGTCCGAAGTTGGCCTGGTTGTTTCTTCGCAAACA | + |
Preference number: 6 (lower is better) Translates to: SPPSDLCPSRLA*SEVGLVVSSQT Trigger: TGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCTGATGGTGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CAA 90 bp | AGCTCTGTGGAGACTTTTTCAAACTGGCTGAGCACAGCACTTGCATaGGCTGACAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTCTCCG | + |
Preference number: 6 (lower is better) Translates to: SSVETFSNWLSTALA*ADRKVSSSSVSFSP Trigger: CGGAGAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 72 bp | CAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTGGCTaGGCACAGCACTTGCATTGGCTGACAGGAAGGTCT | + |
Preference number: 6 (lower is better) Translates to: QSQALWRLFQTG*AQHLHWLTGRS Trigger: AGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS GCA 72 bp | ATCGTCTTCTGTCAGCTTCTCTCCGAGTTTCCTGAGTaGTGTCAGTATCTCCACCTTCCGCTGGGTATACAG | + |
Preference number: 6 (lower is better) Translates to: IVFCQLLSEFPE*CQYLHLPLGIQ Trigger: CTGTATACCCAGCGGAAGGTGGAGATACTGACAGCACTCAGGAAACTCGGAGAGAAGCTGACAGAAGACGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CCA 72 bp | TCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCAAACTaGCTGAGCACAGCACTTGCATTGGCTGACAGGAAG | + |
Preference number: 6 (lower is better) Translates to: SPEPSSVETFSN*LSTALALADRK Trigger: CTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CAA 72 bp | GAGACTTTTTCAAACTGGCTGAGCACAGCACTTGCATaGGCTGACAGGAAGGTCTCATCGTCTTCTGTCAGC | + |
Preference number: 6 (lower is better) Translates to: ETFSNWLSTALA*ADRKVSSSSVS Trigger: GCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAAGTCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS CAA 72 bp | GCTTTTTCAACATCGAACCCTGCCAGAGCAAGGACCTaGTCTCCAGAGCCAAGCTCTGTGGAGACTTTTTCA | + |
Preference number: 6 (lower is better) Translates to: AFSTSNPARART*SPEPSSVETFS Trigger: TGAAAAAGTCTCCACAGAGCTTGGCTCTGGAGACAAGGTCCTTGCTCTGGCAGGGTTCGATGTTGAAAAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 72 bp | TTTTTCAAACTGGCTGAGCACAGCACTTGCATTGGCTaGCAGGAAGGTCTCATCGTCTTCTGTCAGCTTCTC | + |
Preference number: 6 (lower is better) Translates to: FFKLAEHSTCIG*QEGLIVFCQLL Trigger: GAGAAGCTGACAGAAGACGATGAGACCTTCCTGTCAGCCAATGCAAGTGCTGTGCTCAGCCAGTTTGAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS GCA 72 bp | AGCTCCTCCCTGCATTCCTCCAGGTCTTGTAACTGCTaGATCAGTCTATCCAACTGCTCTTCTAAATTCTGC | + |
Preference number: 6 (lower is better) Translates to: SSSLHSSRSCNC*ISLSNCSSKFC Trigger: GCAGAATTTAGAAGAGCAGTTGGATAGACTGATGCAGCAGTTACAAGACCTGGAGGAATGCAGGGAGGAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030842.8 ENSMUST00000124413.8 ENSMUST00000141293.8 |
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CDS GCA 72 bp | TCGAGCTCCTCCCTGCATTCCTCCAGGTCTTGTAACTaGTGCATCAGTCTATCCAACTGCTCTTCTAAATTC | + |
Preference number: 6 (lower is better) Translates to: SSSSLHSSRSCN*CISLSNCSSKF Trigger: GAATTTAGAAGAGCAGTTGGATAGACTGATGCAGCAGTTACAAGACCTGGAGGAATGCAGGGAGGAGCTCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030842.8 ENSMUST00000124413.8 ENSMUST00000141293.8 |
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CDS CCA 72 bp | AGATCTCTGTCCATCTCGGCTAGCCTTGTCCGAAGTTaGCCTGGTTGTTTCTTCGCAAACAATCTGATGACT | + |
Preference number: 6 (lower is better) Translates to: RSLSISASLVRS*PGCFFANNLMT Trigger: AGTCATCAGATTGTTTGCGAAGAAACAACCAGGCCAACTTCGGACAAGGCTAGCCGAGATGGACAGAGATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |
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CDS TCA 72 bp | CATCCCACTGAGTTCATCTACCAAAGTCATATTTCCTaGCATAATCTTCTTCAGCGAATCGTTGAACTCACT | + |
Preference number: 6 (lower is better) Translates to: HPTEFIYQSHIS*HNLLQRIVELT Trigger: AGTGAGTTCAACGATTCGCTGAAGAAGATTATGTCAGGAAATATGACTTTGGTAGATGAACTCAGTGGGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030842.8 |