RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LYZ1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069515

Ensembl transcript IDs: ENSMUST00000092162.7

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCCCTCAGAAACCCTCCCGGCCCACCACAGAGGCTGTTCTAACTaGGTGCTGGGACTGCACAAAGCCCTGCAGCTCACACAACTGCTG +
Preference number: 1 (lower is better)
Translates to: VPSETLPAHHRGCSN*VLGLHKALQLTQLL
Trigger: CAGCAGTTGTGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCACCCAGTTAGAACAGCCTCTGTGGTGGGCCGGGAGGGTTTCTGAGGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 90 bp CCTCAGAAACCCTCCCGGCCCACCACAGAGGCTGTTCTAACTGGGTaGTGGGACTGCACAAAGCCCTGCAGCTCACACAACTGCTGTTTT +
Preference number: 1 (lower is better)
Translates to: PQKPSRPTTEAVLTG*WDCTKPCSSHNCCF
Trigger: AAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCACCCAGTTAGAACAGCCTCTGTGGTGGGCCGGGAGGGTTTCTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 90 bp ACCACAGAGGCTGTTCTAACTGGGTGCTGGGACTGCACAAAGCCCTaGAGCTCACACAACTGCTGTTTTCCCAAGATCAACTGGTCTCCT +
Preference number: 1 (lower is better)
Translates to: TTEAVLTGCWDCTKP*SSHNCCFPKINWSP
Trigger: AGGAGACCAGTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCACCCAGTTAGAACAGCCTCTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 90 bp GCTGAAGCTTGTGAGGAGGAAGTGTCTGTTTTGCCCTGTTTCTGCTaGAGTCCTGTTACTTGGAGGGGAAAGCGAGGAAGTGTGACCTCT +
Preference number: 1 (lower is better)
Translates to: AEACEEEVSVLPCFC*SPVTWRGKRGSVTS
Trigger: AGAGGTCACACTTCCTCGCTTTCCCCTCCAAGTAACAGGACTTCAGCAGAAACAGGGCAAAACAGACACTTCCTCCTCACAAGCTTCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 90 bp ACAACACAGCATCAGCTGAAGCTTGTGAGGAGGAAGTGTCTGTTTTaGCCTGTTTCTGCTGAAGTCCTGTTACTTGGAGGGGAAAGCGAG +
Preference number: 1 (lower is better)
Translates to: TTQHQLKLVRRKCLF*PVSAEVLLLGGESE
Trigger: CTCGCTTTCCCCTCCAAGTAACAGGACTTCAGCAGAAACAGGGCAAAACAGACACTTCCTCCTCACAAGCTTCAGCTGATGCTGTGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 90 bp CTAACTGGGTGCTGGGACTGCACAAAGCCCTGCAGCTCACACAACTaGTGTTTTCCCAAGATCAACTGGTCTCCTATAAACAGTTCTTGT +
Preference number: 1 (lower is better)
Translates to: LTGCWDCTKPCSSHN*CFPKINWSPINSSC
Trigger: ACAAGAACTGTTTATAGGAGACCAGTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCACCCAGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 90 bp CTGTGGTTATTGGCTGGTACAAGCTCTTCTGTCTCAGAGTTAGTATaGATGAAGGAACTTAAGAAAGATCAGGACAGGCACAGCTCACTA +
Preference number: 1 (lower is better)
Translates to: LWLLAGTSSSVSELV*MKELKKDQDRHSSL
Trigger: TAGTGAGCTGTGCCTGTCCTGATCTTTCTTAAGTTCCTTCATTCATACTAACTCTGAGACAGAAGAGCTTGTACCAGCCAATAACCACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 90 bp ATTAAGATGAATTCCAATGGAAGTCAATGTGAATCACTTCCTGGCTaGAGAACTGACCTACAGAGATGTCTGTGTGGCAATCACTGTGTT +
Preference number: 1 (lower is better)
Translates to: IKMNSNGSQCESLPG*RTDLQRCLCGNHCV
Trigger: AACACAGTGATTGCCACACAGACATCTCTGTAGGTCAGTTCTTCAGCCAGGAAGTGATTCACATTGACTTCCATTGGAATTCATCTTAAT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR CCA 90 bp GTACTTTTTCACTGTGAGATTAGATTTGCTCCTGTGGTTATTGGCTaGTACAAGCTCTTCTGTCTCAGAGTTAGTATGAATGAAGGAACT +
Preference number: 1 (lower is better)
Translates to: VLFHCEIRFAPVVIG*YKLFCLRVSMNEGT
Trigger: AGTTCCTTCATTCATACTAACTCTGAGACAGAAGAGCTTGTACCAGCCAATAACCACAGGAGCAAATCTAATCTCACAGTGAAAAAGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR TCA 90 bp CACAAAGCCCTGCAGCTCACACAACTGCTGTTTTCCCAAGATCAACTGGTCTCCTTGCCCTGTTTCTGCTaGAGTCCTGTTACTTGGAGG +
Preference number: 2 (lower is better)
Translates to: HKALQLTQLLFSQDQLVSLPCFC*SPVTWR
Trigger: CCTCCAAGTAACAGGACTTCAGCAGAAACAGGGCAA...GGAGACCAGTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR TCA 90 bp CACAAAGCCCTGCAGCTCACACAACTGCTGTTTTCCCAAGATCAACTGGTCTCCGAATCACTTCCTGGCTaGAGAACTGACCTACAGAGA +
Preference number: 2 (lower is better)
Translates to: HKALQLTQLLFSQDQLVSESLPG*RTDLQR
Trigger: TCTCTGTAGGTCAGTTCTTCAGCCAGGAAGTGATTC...GGAGACCAGTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR TCA 90 bp AGATTTGCTCCTGTGGTTATTGGCTGGTACAAGCTCTTCTGTCTCAGAGTTAGTCATCCATGGCTTTGCTaGCTGACAAGGGAGACTTTG +
Preference number: 2 (lower is better)
Translates to: RFAPVVIGWYKLFCLRVSHPWLC*LTRETL
Trigger: CAAAGTCTCCCTTGTCAGTCAGCAAAGCCATGGATG...ACTAACTCTGAGACAGAAGAGCTTGTACCAGCCAATAACCACAGGAGCAAATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR CCA 90 bp CCAATGGAAGTCAATGTGAATCACTTCCTGGCTGAAGAACTGACCTACAGAGATTGGCAATCACTGTGTTaGCTGACTGTCACCAGCATC +
Preference number: 2 (lower is better)
Translates to: PMEVNVNHFLAEELTYRDWQSLC*LTVTSI
Trigger: GATGCTGGTGACAGTCAGCCAACACAGTGATTGCCA...ATCTCTGTAGGTCAGTTCTTCAGCCAGGAAGTGATTCACATTGACTTCCATTGG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR TCA 90 bp TTCCCTGATAAGTTTCTGAGTTCAGACAATCTCAGTTCTCATCCACTGAGATTCCAATGGAAGTCAATGTaGATCACTTCCTGGCTGAAG +
Preference number: 2 (lower is better)
Translates to: FPDKFLSSDNLSSHPLRFQWKSM*ITSWLK
Trigger: CTTCAGCCAGGAAGTGATTCACATTGACTTCCATTG...GAATCTCAGTGGATGAGAACTGAGATTGTCTGAACTCAGAAACTTATCAGGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR GCA 90 bp TTCCCTGATAAGTTTCTGAGTTCAGACAATCTCAGTTCTCATCCACTGAGATTCTGCAGCTCACACAACTaGTGTTTTCCCAAGATCAAC +
Preference number: 2 (lower is better)
Translates to: FPDKFLSSDNLSSHPLRFCSSHN*CFPKIN
Trigger: GTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCA...GAATCTCAGTGGATGAGAACTGAGATTGTCTGAACTCAGAAACTTATCAGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR-3UTR CCA 90 bp ATTCACACAGGTCTGATTAAGATGAATTCCAATGGAAGTCAATGTGAATCACTTGAGAAAGAGACAGAATaGGCTGCAGTAGAAGCACAC +
Preference number: 2 (lower is better)
Translates to: IHTGLIKMNSNGSQCESLEKETE*AAVEAH
Trigger: GTGTGCTTCTACTGCAGCCCATTCTGTCTCTTTCTC...AAGTGATTCACATTGACTTCCATTGGAATTCATCTTAATCAGACCTGTGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR CCA 72 bp GAAACCCTCCCGGCCCACCACAGAGGCTGTTCTAACTaGGTGCTGGGACTGCACAAAGCCCTGCAGCTCACA +
Preference number: 3 (lower is better)
Translates to: ETLPAHHRGCSN*VLGLHKALQLT
Trigger: TGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCACCCAGTTAGAACAGCCTCTGTGGTGGGCCGGGAGGGTTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 72 bp TCAGACAATCTCAGTTCTCATCCACTGAGATTCCTGTaGCCTCAGAAACCCTCCCGGCCCACCACAGAGGCT +
Preference number: 3 (lower is better)
Translates to: SDNLSSHPLRFL*PQKPSRPTTEA
Trigger: AGCCTCTGTGGTGGGCCGGGAGGGTTTCTGAGGGCACAGGAATCTCAGTGGATGAGAACTGAGATTGTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 72 bp GCTGTTCTAACTGGGTGCTGGGACTGCACAAAGCCCTaGAGCTCACACAACTGCTGTTTTCCCAAGATCAAC +
Preference number: 3 (lower is better)
Translates to: AVLTGCWDCTKP*SSHNCCFPKIN
Trigger: GTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCACCCAGTTAGAACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 72 bp GTGTTGGCTGACTGTCACCAGCATCCATGGCTTTGCTaGCTGACAAGGGAGACTTTGCACAACACAGCATCA +
Preference number: 3 (lower is better)
Translates to: VLADCHQHPWLC*LTRETLHNTAS
Trigger: TGATGCTGTGTTGTGCAAAGTCTCCCTTGTCAGTCAGCAAAGCCATGGATGCTGGTGACAGTCAGCCAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 72 bp AGATCAGGACAGGCACAGCTCACTAGTCCTCCTGAATaGCTCATGACACTGGGAACATCCTCTCAAGGGTTA +
Preference number: 3 (lower is better)
Translates to: RSGQAQLTSPPE*LMTLGTSSQGL
Trigger: TAACCCTTGAGAGGATGTTCCCAGTGTCATGAGGCATTCAGGAGGACTAGTGAGCTGTGCCTGTCCTGATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 72 bp TGTGAGGAGGAAGTGTCTGTTTTGCCCTGTTTCTGCTaGAGTCCTGTTACTTGGAGGGGAAAGCGAGGAAGT +
Preference number: 3 (lower is better)
Translates to: CEEEVSVLPCFC*SPVTWRGKRGS
Trigger: ACTTCCTCGCTTTCCCCTCCAAGTAACAGGACTTCAGCAGAAACAGGGCAAAACAGACACTTCCTCCTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR GCA 72 bp TGCTGGGACTGCACAAAGCCCTGCAGCTCACACAACTaGTGTTTTCCCAAGATCAACTGGTCTCCTATAAAC +
Preference number: 3 (lower is better)
Translates to: CWDCTKPCSSHN*CFPKINWSPIN
Trigger: GTTTATAGGAGACCAGTTGATCTTGGGAAAACAGCAGTTGTGTGAGCTGCAGGGCTTTGTGCAGTCCCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 72 bp AATTCCAATGGAAGTCAATGTGAATCACTTCCTGGCTaGAGAACTGACCTACAGAGATGTCTGTGTGGCAAT +
Preference number: 3 (lower is better)
Translates to: NSNGSQCESLPG*RTDLQRCLCGN
Trigger: ATTGCCACACAGACATCTCTGTAGGTCAGTTCTTCAGCCAGGAAGTGATTCACATTGACTTCCATTGGAATT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR TCA 72 bp TTGGCTGGTACAAGCTCTTCTGTCTCAGAGTTAGTATaGATGAAGGAACTTAAGAAAGATCAGGACAGGCAC +
Preference number: 3 (lower is better)
Translates to: LAGTSSSVSELV*MKELKKDQDRH
Trigger: GTGCCTGTCCTGATCTTTCTTAAGTTCCTTCATTCATACTAACTCTGAGACAGAAGAGCTTGTACCAGCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR CCA 72 bp CACTGTGAGATTAGATTTGCTCCTGTGGTTATTGGCTaGTACAAGCTCTTCTGTCTCAGAGTTAGTATGAAT +
Preference number: 3 (lower is better)
Translates to: HCEIRFAPVVIG*YKLFCLRVSMN
Trigger: ATTCATACTAACTCTGAGACAGAAGAGCTTGTACCAGCCAATAACCACAGGAGCAAATCTAATCTCACAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR CCA 72 bp TTGTACTTTTTCACTGTGAGATTAGATTTGCTCCTGTaGTTATTGGCTGGTACAAGCTCTTCTGTCTCAGAG +
Preference number: 3 (lower is better)
Translates to: LYFFTVRLDLLL*LLAGTSSSVSE
Trigger: CTCTGAGACAGAAGAGCTTGTACCAGCCAATAACCACAGGAGCAAATCTAATCTCACAGTGAAAAAGTACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR TCA 90 bp CTGGCTGAAGAACTGACCTACAGAGATGTCTGTGTGGCAATCACTGTGTTGGCTCCTTGGCCTGGGCAGTaGCAGAAAGCAGGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: LAEELTYRDVCVAITVLAPWPGQ*QKAGGV
Trigger: GACTCCTCCTGCTTTCTGTCACTGCCCAGGCCAAGG...AGCCAACACAGTGATTGCCACACAGACATCTCTGTAGGTCAGTTCTTCAGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR GCA 90 bp CTGACAAGGGAGACTTTGCACAACACAGCATCAGCTGAAGCTTGTGAGGAGGAAGCAGTGATGTCATCCTaGAGCAGAGCACTGCAATTG +
Preference number: 4 (lower is better)
Translates to: LTRETLHNTASAEACEEEAVMSS*SRALQL
Trigger: CAATTGCAGTGCTCTGCTGCAGGATGACATCACTGC...TTCCTCCTCACAAGCTTCAGCTGATGCTGTGTTGTGCAAAGTCTCCCTTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR CAA 72 bp GTCTGTTTTGCCCTGTTTCTGCTGAAGTCCTGTTACTaGGAGGGGAAAGCGAGGAAGTGTGACCTCTCTCAT +
Preference number: 4 (lower is better)
Translates to: VCFALFLLKSCY*EGKARKCDLSH
Trigger: ATGAGAGAGGTCACACTTCCTCGCTTTCCCCTCCAAGTAACAGGACTTCAGCAGAAACAGGGCAAAACAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR TCA 90 bp GATAAGTTTCTGAGTTCAGACAATCTCAGTTCTCATCCACTGAGATTCCTGTGCATTGTATGGCTGCAGTaGTGTCATCCTGCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: DKFLSSDNLSSHPLRFLCIVWLQ*CHPAAE
Trigger: CTCTGCTGCAGGATGACATCACTGCAGCCATACAAT...GCACAGGAATCTCAGTGGATGAGAACTGAGATTGTCTGAACTCAGAAACTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR GCA 90 bp GAACTGACCTACAGAGATGTCTGTGTGGCAATCACTGTGTTGGCTGACTGTCACCTCGTGTGTTATAATTaGTCTCATGCTGAGCTAAAC +
Preference number: 4 (lower is better)
Translates to: ELTYRDVCVAITVLADCHLVCYN*SHAELN
Trigger: GTTTAGCTCAGCATGAGAGCAATTATAACACACGAG...GTGACAGTCAGCCAACACAGTGATTGCCACACAGACATCTCTGTAGGTCAGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR CCA 90 bp CTGGCTGAAGAACTGACCTACAGAGATGTCTGTGTGGCAATCACTGTGTTGGCTTCCTTTTCAGAATTCTaGCCAACTCACAACGATTGT +
Preference number: 4 (lower is better)
Translates to: LAEELTYRDVCVAITVLASFSEF*PTHNDC
Trigger: ACAATCGTTGTGAGTTGGCCAGAATTCTGAAAAGGA...AGCCAACACAGTGATTGCCACACAGACATCTCTGTAGGTCAGTTCTTCAGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR CCA 90 bp TGTTTTGCCCTGTTTCTGCTGAAGTCCTGTTACTTGGAGGGGAAAGCGAGGAAGGGCATTCTTAGATCTTaGGGTTTTGCCATCATTACA +
Preference number: 4 (lower is better)
Translates to: CFALFLLKSCYLEGKARKGILRS*GFAIIT
Trigger: TGTAATGATGGCAAAACCCCAAGATCTAAGAATGCC...CTTCCTCGCTTTCCCCTCCAAGTAACAGGACTTCAGCAGAAACAGGGCAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR TCA 90 bp TTCCCTGATAAGTTTCTGAGTTCAGACAATCTCAGTTCTCATCCACTGAGATTCACCAGTATCGGCTATTaGTCTGAAATATCCCATAGT +
Preference number: 4 (lower is better)
Translates to: FPDKFLSSDNLSSHPLRFTSIGY*SEISHS
Trigger: ACTATGGGATATTTCAGATCAATAGCCGATACTGGT...GAATCTCAGTGGATGAGAACTGAGATTGTCTGAACTCAGAAACTTATCAGGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
3UTR CAA 72 bp TTTTTCACTGTGAGATTAGATTTGCTCCTGTGGTTATaGGCTGGTACAAGCTCTTCTGTCTCAGAGTTAGTA +
Preference number: 4 (lower is better)
Translates to: FFTVRLDLLLWL*AGTSSSVSELV
Trigger: TACTAACTCTGAGACAGAAGAGCTTGTACCAGCCAATAACCACAGGAGCAAATCTAATCTCACAGTGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 90 bp CTGGGACAGATCTCGGTTTTGACATTGTGTTCGCCATGCCACCCATaGTCGAATGCCTTGGGGATCTCTCACCACCCTCTTTGCACATTG +
Preference number: 5 (lower is better)
Translates to: LGQISVLTLCSPCHP*SNALGISHHPLCTL
Trigger: CAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGATCTGTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 90 bp GATCTCGGTTTTGACATTGTGTTCGCCATGCCACCCATGCTCGAATaGCTTGGGGATCTCTCACCACCCTCTTTGCACATTGTATGGCTG +
Preference number: 5 (lower is better)
Translates to: DLGFDIVFAMPPMLE*LGDLSPPSLHIVWL
Trigger: CAGCCATACAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 90 bp AATGCCTTGGGGATCTCTCACCACCCTCTTTGCACATTGTATGGCTaGAGTGATGTCATCCTGCAGCAGAGCACTGCAATTGATCCCACA +
Preference number: 5 (lower is better)
Translates to: NALGISHHPLCTLYG*SDVILQQSTAIDPT
Trigger: TGTGGGATCAATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGCCATACAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 90 bp CTCACCACCCTCTTTGCACATTGTATGGCTGCAGTGATGTCATCCTaGAGCAGAGCACTGCAATTGATCCCACAGGCATTCTTAGATCTT +
Preference number: 5 (lower is better)
Translates to: LTTLFAHCMAAVMSS*SRALQLIPQAFLDL
Trigger: AAGATCTAAGAATGCCTGTGGGATCAATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGCCATACAATGTGCAAAGAGGGTGGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS TCA 90 bp TATAATTGCTCTCATGCTGAGCTAAACACACCCAGTCAGCCAGCTTaGCACCACGGTAGCCATCCATTCCATTCCTTTTCAGAATTCTGG +
Preference number: 5 (lower is better)
Translates to: YNCSHAELNTPSQPA*HHGSHPFHSFSEFW
Trigger: CCAGAATTCTGAAAAGGAATGGAATGGATGGCTACCGTGGTGTCAAGCTGGCTGACTGGGTGTGTTTAGCTCAGCATGAGAGCAATTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CCA 90 bp CTGCAGCAGAGCACTGCAATTGATCCCACAGGCATTCTTAGATCTTaGGGTTTTGCCATCATTACACCAGTATCGGCTATTGATCTGAAA +
Preference number: 5 (lower is better)
Translates to: LQQSTAIDPTGILRS*GFAIITPVSAIDLK
Trigger: TTTCAGATCAATAGCCGATACTGGTGTAATGATGGCAAAACCCCAAGATCTAAGAATGCCTGTGGGATCAATTGCAGTGCTCTGCTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR CAA 90 bp ATGTCTGTGTGGCAATCACTGTGTTGGCTGACTGTCACCAGCATCCATGGCTTTTTAGATCTTGGGGTTTaGCCATCATTACACCAGTAT +
Preference number: 5 (lower is better)
Translates to: MSVWQSLCWLTVTSIHGFLDLGV*PSLHQY
Trigger: ATACTGGTGTAATGATGGCAAAACCCCAAGATCTAA...AAAGCCATGGATGCTGGTGACAGTCAGCCAACACAGTGATTGCCACACAGACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR CAA 90 bp CTCACACAACTGCTGTTTTCCCAAGATCAACTGGTCTCCTATAAACAGTTCTTGATCTCGGTTTTGACATaGTGTTCGCCATGCCACCCA +
Preference number: 5 (lower is better)
Translates to: LTQLLFSQDQLVSYKQFLISVLT*CSPCHP
Trigger: TGGGTGGCATGGCGAACACAATGTCAAAACCGAGAT...CAAGAACTGTTTATAGGAGACCAGTTGATCTTGGGAAAACAGCAGTTGTGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS-3UTR CAA 90 bp ATTCACACAGGTCTGATTAAGATGAATTCCAATGGAAGTCAATGTGAATCACTTCACCCTCTTTGCACATaGTATGGCTGCAGTGATGTC +
Preference number: 5 (lower is better)
Translates to: IHTGLIKMNSNGSQCESLHPLCT*YGCSDV
Trigger: GACATCACTGCAGCCATACAATGTGCAAAGAGGGTG...AAGTGATTCACATTGACTTCCATTGGAATTCATCTTAATCAGACCTGTGTGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS TCA 72 bp CCAACTCACAACGATTGTAGACCTTGGCCTGGGCAGTaGCAGAAAGCAGGAGGAGTCCCAGAGTCAGGAGAG +
Preference number: 6 (lower is better)
Translates to: PTHNDCRPWPGQ*QKAGGVPESGE
Trigger: CTCTCCTGACTCTGGGACTCCTCCTGCTTTCTGTCACTGCCCAGGCCAAGGTCTACAATCGTTGTGAGTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 72 bp TGCTCGAATGCCTTGGGGATCTCTCACCACCCTCTTTaGACATTGTATGGCTGCAGTGATGTCATCCTGCAG +
Preference number: 6 (lower is better)
Translates to: CSNALGISHHPL*TLYGCSDVILQ
Trigger: CTGCAGGATGACATCACTGCAGCCATACAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 72 bp ATCTCGGTTTTGACATTGTGTTCGCCATGCCACCCATaGTCGAATGCCTTGGGGATCTCTCACCACCCTCTT +
Preference number: 6 (lower is better)
Translates to: ISVLTLCSPCHP*SNALGISHHPL
Trigger: AAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CCA 72 bp CATTGTGTTCGCCATGCCACCCATGCTCGAATGCCTTaGGGATCTCTCACCACCCTCTTTGCACATTGTATG +
Preference number: 6 (lower is better)
Translates to: HCVRHATHARMP*GSLTTLFAHCM
Trigger: CATACAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 90 bp TCGGTTTTGACATTGTGTTCGCCATGCCACCCATGCTCGAATGCCTaGGGGATCTCTCACCACCCTCTTTGCACATTGTATGGCTGCAGT +
Preference number: 6 (lower is better)
Translates to: SVLTLCSPCHPCSNA*GISHHPLCTLYGCS
Trigger: ACTGCAGCCATACAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 90 bp GACTCCGCAGTTCCGAATATACTGGGACAGATCTCGGTTTTGACATaGTGTTCGCCATGCCACCCATGCTCGAATGCCTTGGGGATCTCT +
Preference number: 6 (lower is better)
Translates to: DSAVPNILGQISVLT*CSPCHPCSNALGIS
Trigger: AGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGATCTGTCCCAGTATATTCGGAACTGCGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 72 bp GGGATCTCTCACCACCCTCTTTGCACATTGTATGGCTaGAGTGATGTCATCCTGCAGCAGAGCACTGCAATT +
Preference number: 6 (lower is better)
Translates to: GISHHPLCTLYG*SDVILQQSTAI
Trigger: AATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGCCATACAATGTGCAAAGAGGGTGGTGAGAGATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 72 bp TTTGACATTGTGTTCGCCATGCCACCCATGCTCGAATaGCTTGGGGATCTCTCACCACCCTCTTTGCACATT +
Preference number: 6 (lower is better)
Translates to: FDIVFAMPPMLE*LGDLSPPSLHI
Trigger: AATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 72 bp ACATTGTGTTCGCCATGCCACCCATGCTCGAATGCCTaGGGGATCTCTCACCACCCTCTTTGCACATTGTAT +
Preference number: 6 (lower is better)
Translates to: TLCSPCHPCSNA*GISHHPLCTLY
Trigger: ATACAATGTGCAAAGAGGGTGGTGAGAGATCCCCAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS TCA 72 bp TCTCATGCTGAGCTAAACACACCCAGTCAGCCAGCTTaGCACCACGGTAGCCATCCATTCCATTCCTTTTCA +
Preference number: 6 (lower is better)
Translates to: SHAELNTPSQPA*HHGSHPFHSFS
Trigger: TGAAAAGGAATGGAATGGATGGCTACCGTGGTGTCAAGCTGGCTGACTGGGTGTGTTTAGCTCAGCATGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS GCA 72 bp CTCTTTGCACATTGTATGGCTGCAGTGATGTCATCCTaGAGCAGAGCACTGCAATTGATCCCACAGGCATTC +
Preference number: 6 (lower is better)
Translates to: LFAHCMAAVMSS*SRALQLIPQAF
Trigger: GAATGCCTGTGGGATCAATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGCCATACAATGTGCAAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 72 bp GCTGCAGTGATGTCATCCTGCAGCAGAGCACTGCAATaGATCCCACAGGCATTCTTAGATCTTGGGGTTTTG +
Preference number: 6 (lower is better)
Translates to: AAVMSSCSRALQ*IPQAFLDLGVL
Trigger: CAAAACCCCAAGATCTAAGAATGCCTGTGGGATCAATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 72 bp GTTCCGAATATACTGGGACAGATCTCGGTTTTGACATaGTGTTCGCCATGCCACCCATGCTCGAATGCCTTG +
Preference number: 6 (lower is better)
Translates to: VPNILGQISVLT*CSPCHPCSNAL
Trigger: CAAGGCATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGATCTGTCCCAGTATATTCGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 72 bp TCCGCAGTTCCGAATATACTGGGACAGATCTCGGTTTaGACATTGTGTTCGCCATGCCACCCATGCTCGAAT +
Preference number: 6 (lower is better)
Translates to: SAVPNILGQISV*TLCSPCHPCSN
Trigger: ATTCGAGCATGGGTGGCATGGCGAACACAATGTCAAAACCGAGATCTGTCCCAGTATATTCGGAACTGCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CAA 90 bp CATTGTATGGCTGCAGTGATGTCATCCTGCAGCAGAGCACTGCAATaGATCCCACAGGCATTCTTAGATCTTGGGGTTTTGCCATCATTA +
Preference number: 6 (lower is better)
Translates to: HCMAAVMSSCSRALQ*IPQAFLDLGVLPSL
Trigger: TAATGATGGCAAAACCCCAAGATCTAAGAATGCCTGTGGGATCAATTGCAGTGCTCTGCTGCAGGATGACATCACTGCAGCCATACAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS TCA 72 bp TTGGGGTTTTGCCATCATTACACCAGTATCGGCTATTaGTCTGAAATATCCCATAGTCGGTGCTTCGGTCTC +
Preference number: 6 (lower is better)
Translates to: LGFCHHYTSIGY*SEISHSRCFGL
Trigger: GAGACCGAAGCACCGACTATGGGATATTTCAGATCAATAGCCGATACTGGTGTAATGATGGCAAAACCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7
CDS CCA 72 bp AGCACTGCAATTGATCCCACAGGCATTCTTAGATCTTaGGGTTTTGCCATCATTACACCAGTATCGGCTATT +
Preference number: 6 (lower is better)
Translates to: STAIDPTGILRS*GFAIITPVSAI
Trigger: AATAGCCGATACTGGTGTAATGATGGCAAAACCCCAAGATCTAAGAATGCCTGTGGGATCAATTGCAGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092162.7