RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LYSMD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035840

Ensembl transcript IDs: ENSMUST00000049055.8, ENSMUST00000224300.2, ENSMUST00000224420.2, ENSMUST00000224592.2

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTATGTCTCGGTCCACTTCTTTTAGGAAACTGCCGGCTGACTCACTaGAAGAAAGAGAACCATCAGCTGGCACAATGTCTTGCTCTTGAA +
Preference number: 1 (lower is better)
Translates to: LCLGPLLLGNCRLTH*KKENHQLAQCLALE
Trigger: TTCAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCAGTTTCCTAAAAGAAGTGGACCGAGACATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR GCA 90 bp AACCAATCCCCCAGTCTGCTCCGTAATACGGATCCTTTCGGTGAATaGTTTTGTTATCAGGTTCAAATCGGACCTGTTGTGCTGTTAAGG +
Preference number: 1 (lower is better)
Translates to: NQSPSLLRNTDPFGE*FCYQVQIGPVVLLR
Trigger: CCTTAACAGCACAACAGGTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGACTGGGGGATTGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR GCA 90 bp TATCAACATTATCACTACAGCTGTCCACCAACCAATCCCCCAGTCTaGTCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGG +
Preference number: 1 (lower is better)
Translates to: YQHYHYSCPPTNPPV*SVIRILSVNAFVIR
Trigger: CCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGACTGGGGGATTGGTTGGTGGACAGCTGTAGTGATAATGTTGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR GCA 90 bp ACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTaGTGTGTTGGAGGTGTGAGTCCTGGATGCAAGTGTGAAGAACCC +
Preference number: 1 (lower is better)
Translates to: TGIPFVGPISFSISL*CVGGVSPGCKCEEP
Trigger: GGGTTCTTCACACTTGCATCCAGGACTCACACCTCCAACACAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR TCA 90 bp TCACTGGAAGAAAGAGAACCATCAGCTGGCACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGAGGATGTAAAATGTGTCTTCCTTTC +
Preference number: 1 (lower is better)
Translates to: SLEEREPSAGTMSCS*KYGTGGGCKMCLPF
Trigger: GAAAGGAAGACACATTTTACATCCTCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTTTCTTCCAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR TCA 90 bp CAGACACGACTTCATTCAGGTTCTCCTTCTTGGTGTCTGTACACTTaGCTATTTGTTCTATGTCTCGGTCCACTTCTTTTAGGAAACTGC +
Preference number: 1 (lower is better)
Translates to: QTRLHSGSPSWCLYT*LFVLCLGPLLLGNC
Trigger: GCAGTTTCCTAAAAGAAGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR-3UTR CCA 90 bp TGCTGTGTTGGAGGTGTGAGTCCTGGATGCAAGTGTGAAGAACCCACTGTTGAAAAGAGAACCATCAGCTaGCACAATGTCTTGCTCTTG +
Preference number: 2 (lower is better)
Translates to: CCVGGVSPGCKCEEPTVEKRTIS*HNVLLL
Trigger: CAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTT...TTCAACAGTGGGTTCTTCACACTTGCATCCAGGACTCACACCTCCAACACAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR CAA 90 bp TGTTGTGCTGTTAAGGCAGACACGACTTCATTCAGGTTCTCCTTCTaGGTGTCTGTACACTTGACTATTTGTTCTATGTCTCGGTCCACT +
Preference number: 2 (lower is better)
Translates to: CCAVKADTTSFRFSF*VSVHLTICSMSRST
Trigger: AGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGCCTTAACAGCACAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR-3UTR CCA 90 bp TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACCCACGCCACACACCTTaGCATATGTTTCTCCATTGG +
Preference number: 2 (lower is better)
Translates to: LGEGINPMAMTQFSYGYNPRHTP*HMFLHW
Trigger: CCAATGGAGAAACATATGCCAAGGTGTGTGGCGTGG...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR CAA 90 bp GCAGACACGACTTCATTCAGGTTCTCCTTCTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCTCGGTCCACTTCTTTTAGGAAACTG +
Preference number: 2 (lower is better)
Translates to: ADTTSFRFSFLVSVH*TICSMSRSTSFRKL
Trigger: CAGTTTCCTAAAAGAAGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR-3UTR TCA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATATGAAGAAGTGGAGGTaGGGTTGCAGAGCTAGTCAT +
Preference number: 2 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHMKKWR*GCRASH
Trigger: ATGACTAGCTCTGCAACCTCACCTCCACTTCTTCAT...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR TCA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATGTAGGGGCCTTAAAATaGCTGACTTCCATGTCAGTC +
Preference number: 2 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHVGALK*LTSMSV
Trigger: GACTGACATGGAAGTCAGTCATTTTAAGGCCCCTAC...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR TCA 90 bp CTGACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTGACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGA +
Preference number: 2 (lower is better)
Translates to: LTNRYSFCWTNFIFHLSVTMSCS*KYGTGG
Trigger: TCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGT...CACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR-3UTR GCA 90 bp ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTGGTGTGAGTCCTGGATaGAAGTGTGAAGAACCCACT +
Preference number: 2 (lower is better)
Translates to: IIFFCKTSEAGCTNLFFLGVSPG*KCEEPT
Trigger: AGTGGGTTCTTCACACTTGCATCCAGGACTCACACC...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR-3UTR TCA 90 bp ACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTGCTGTGGTGTCTGTACACTTaGCTATTTGTTCTATGTCTC +
Preference number: 2 (lower is better)
Translates to: TNRYSFCWTNFIFHLSVLWCLYT*LFVLCL
Trigger: GAGACATAGAACAAATAGTCAAGTGTACAGACACCA...CAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR-3UTR CCA 90 bp TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACCCCAATGACACTATTTaGGGGGTCTTAAGATATCTA +
Preference number: 2 (lower is better)
Translates to: LGEGINPMAMTQFSYGYNPNDTI*GVLRYL
Trigger: TAGATATCTTAAGACCCCCCAAATAGTGTCATTGGG...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR TCA 90 bp ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTGTTGTCGGATGCATGTaGGTCACCATATTCCATATG +
Preference number: 2 (lower is better)
Translates to: IIFFCKTSEAGCTNLFFLVVGCM*VTIFHM
Trigger: CATATGGAATATGGTGACTCACATGCATCCGACAAC...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
3UTR-3UTR TCA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTCCTTTAAATATAAGTaGTCAGACCCTTCGATCACA +
Preference number: 2 (lower is better)
Translates to: SIHGQQIITWFCRQDSENSFKYK*SDPSIT
Trigger: TGTGATCGAAGGGTCTGATCACTTATATTTAAAGGA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR GCA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTATAGCATATGCAGGTaGTATAGACAGTCCATTTGT +
Preference number: 2 (lower is better)
Translates to: SIHGQQIITWFCRQDSENYSICR*YRQSIC
Trigger: ACAAATGGACTGTCTATAGCACCTGCATATGCTATA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR GCA 90 bp TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCCCTCAATATAGCATATaGAGGTGCTATAGACAGTCC +
Preference number: 2 (lower is better)
Translates to: SFSSARLQRQVVQICFSFPQYSI*RCYRQS
Trigger: GGACTGTCTATAGCACCTGCATATGCTATATTGAGG...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
3UTR-3UTR GCA 90 bp TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTTATGTAGCCTGTTCTaGCCTGAAATCTGCATTTTT +
Preference number: 2 (lower is better)
Translates to: LGEGINPMAMTQFSYGYNLCSLF*PEICIF
Trigger: AAAAATGCAGATTTCAGGGCAGAACAGGCTACATAA...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR CCA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATGCAGTTGCCAAAAATTaGCATAGTTTGCAAATGTAC +
Preference number: 2 (lower is better)
Translates to: SIHGQQIITWFCRQDSENAVAKN*HSLQMY
Trigger: GTACATTTGCAAACTATGCCAATTTTTGGCAACTGC...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR GCA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATTCCTTCATTCATTTATaGTCAAAAGTGAAGACAGAC +
Preference number: 2 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHSFIHL*SKVKTD
Trigger: GTCTGTCTTCACTTTTGAGCATAAATGAATGAAGGA...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR TCA 90 bp ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTTTAAGGAATAGATCTTaGCGAATTACAGTGTCCGTG +
Preference number: 2 (lower is better)
Translates to: IIFFCKTSEAGCTNLFFLLRNRS*RITVSV
Trigger: CACGGACACTGTAATTCGTCAAGATCTATTCCTTAA...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
3UTR GCA 72 bp TATCACTACAGCTGTCCACCAACCAATCCCCCAGTCTaGTCCGTAATACGGATCCTTTCGGTGAATGCTTTT +
Preference number: 3 (lower is better)
Translates to: YHYSCPPTNPPV*SVIRILSVNAF
Trigger: AAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGACTGGGGGATTGGTTGGTGGACAGCTGTAGTGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR-3UTR CAA 90 bp CAGCTCACTGTTACGTTTTGTGTTGAGCATCATGTGCCTGAGGGTCTTGCCTATTTCAGGTTCTCCTTCTaGGTGTCTGTACACTTGACT +
Preference number: 3 (lower is better)
Translates to: QLTVTFCVEHHVPEGLAYFRFSF*VSVHLT
Trigger: AGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAA...ATAGGCAAGACCCTCAGGCACATGATGCTCAACACAAAACGTAACAGTGAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR GCA 72 bp GCAGGGGTACGGCCTGACCAGCCTCAATATAGCATATaGAGGTGCTATAGACAGTCCATTTGTAAAAGTTCA +
Preference number: 3 (lower is better)
Translates to: AGVRPDQPQYSI*RCYRQSICKSS
Trigger: TGAACTTTTACAAATGGACTGTCTATAGCACCTGCATATGCTATATTGAGGCTGGTCAGGCCGTACCCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
3UTR-3UTR CAA 90 bp ACCTGTTGTGCTGTTAAGGCAGACACGACTTCATTCAGGTTCTCCTTCTTGGTGTGTACACTTGACTATTaGTTCTATGTCTCGGTCCAC +
Preference number: 3 (lower is better)
Translates to: TCCAVKADTTSFRFSFLVCTLDY*FYVSVH
Trigger: GTGGACCGAGACATAGAACAAATAGTCAAGTGTACA...CACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGCCTTAACAGCACAACAGGT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR GCA 72 bp TTTGTTCTATGTCTCGGTCCACTTCTTTTAGGAAACTaGCGGCTGACTCACTGGAAGAAAGAGAACCATCAG +
Preference number: 3 (lower is better)
Translates to: FVLCLGPLLLGN*RLTHWKKENHQ
Trigger: CTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCAGTTTCCTAAAAGAAGTGGACCGAGACATAGAACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR TCA 72 bp GAAAGAGAACCATCAGCTGGCACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGAGGATGTAAAATGTGT +
Preference number: 3 (lower is better)
Translates to: EREPSAGTMSCS*KYGTGGGCKMC
Trigger: ACACATTTTACATCCTCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR-3UTR CAA 90 bp ACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTGCTGCACAATGTCTTGCTCTaGAAAATACGGAACAGGTGG +
Preference number: 3 (lower is better)
Translates to: TNRYSFCWTNFIFHLSVLHNVLL*KIRNRW
Trigger: CCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTG...CAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR-3UTR CAA 90 bp CAGGTTCTTTTTGGAAAAGCAGAGGTCAACAGAGTGCCGAATAAAGCAACCCGTCAGGTATTCCTTTTGTaGGACCAATTTCATTTTCCA +
Preference number: 3 (lower is better)
Translates to: QVLFGKAEVNRVPNKATRQVFLL*DQFHFP
Trigger: TGGAAAATGAAATTGGTCCAACAAAAGGAATACCTG...ACGGGTTGCTTTATTCGGCACTCTGTTGACCTCTGCTTTTCCAAAAAGAACCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
3UTR TCA 72 bp ACATTAGATGTAGAAAATGCCACTATTAAGCCCTTTTaGCCACGCCACACACCTTGGCATATGTTTCTCCAT +
Preference number: 3 (lower is better)
Translates to: TLDVENATIKPF*PRHTPWHMFLH
Trigger: ATGGAGAAACATATGCCAAGGTGTGTGGCGTGGTCAAAAGGGCTTAATAGTGGCATTTTCTACATCTAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
3UTR-3UTR CAA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATGACTTCAGAGGCAGGTaGTACAAATTTGTTTTTCCT +
Preference number: 3 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHDFRGR*YKFVFP
Trigger: AGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTC...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR-3UTR CAA 90 bp TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTATCTGTTTCTACATTaGCTTTCATGGCACATATGC +
Preference number: 3 (lower is better)
Translates to: LGEGINPMAMTQFSYGYNYLFLH*LSWHIC
Trigger: GCATATGTGCCATGAAAGCAAATGTAGAAACAGATA...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR CCA 72 bp GATCAAATGGGAAGTTTCCAACCCAATGACACTATTTaGGGGGTCTTAAGATATCTATTTCTTAGCCTGTAT +
Preference number: 3 (lower is better)
Translates to: DQMGSFQPNDTI*GVLRYLFLSLY
Trigger: ATACAGGCTAAGAAATAGATATCTTAAGACCCCCCAAATAGTGTCATTGGGTTGGAAACTTCCCATTTGATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
3UTR-3UTR CAA 90 bp TTGCTGACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCT +
Preference number: 3 (lower is better)
Translates to: LLTNRYSFCWTNFIFHLSLVSVH*TICSMS
Trigger: AGACATAGAACAAATAGTCAAGTGTACAGACACCAA...AGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGTCAGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
3UTR GCA 72 bp CCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTaGATCCACATACTTGAACACTTAAAAATTAAAGCC +
Preference number: 3 (lower is better)
Translates to: PMAMTQFSYGYN*IHILEHLKIKA
Trigger: GGCTTTAATTTTTAAGTGTTCAAGTATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR TCA 90 bp AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACGCTGTGTTGGAGGTGTaGGTCCTGGATGCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: KQLSDACESPYSICTHDHAVLEV*VLDASV
Trigger: CACACTTGCATCCAGGACTCACACCTCCAACACAGC...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACACTGGCCTGAATTCCTaGGAGGGAAACCGTCCGGTT +
Preference number: 4 (lower is better)
Translates to: KQLSDACESPYSICTHDHTGLNS*EGNRPV
Trigger: AACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGT...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp CAGGTTCTTTTTGGAAAAGCAGAGGTCAACAGAGTGCCGAATAAAGCAACCCGTCAAGTACATGGCCACTaGCCTGAATTCCTGGGAGGG +
Preference number: 4 (lower is better)
Translates to: QVLFGKAEVNRVPNKATRQVHGH*PEFLGG
Trigger: CCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTG...ACGGGTTGCTTTATTCGGCACTCTGTTGACCTCTGCTTTTCCAAAAAGAACCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
CDS-3UTR TCA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATACATGGCCACTGGCCTaGATTCCTGGGAGGGAAACC +
Preference number: 4 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHTWPLA*IPGRET
Trigger: GGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGT...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR GCA 90 bp AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACGGTGTGAGTCCTGGATaGAAGTGTGAAGAACCCACT +
Preference number: 4 (lower is better)
Translates to: KQLSDACESPYSICTHDHGVSPG*KCEEPT
Trigger: AGTGGGTTCTTCACACTTGCATCCAGGACTCACACC...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp TCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGGTTCAAATCGGACACTGGCCTGAATTCCTaGGAGGGAAACCGTCCGGTT +
Preference number: 4 (lower is better)
Translates to: SVIRILSVNAFVIRFKSDTGLNS*EGNRPV
Trigger: AACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGT...GTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
CDS-3UTR GCA 90 bp CAGGTTCTTTTTGGAAAAGCAGAGGTCAACAGAGTGCCGAATAAAGCAACCCGTTTTTCCATCTCTCTGTaGTGTGTTGGAGGTGTGAGT +
Preference number: 4 (lower is better)
Translates to: QVLFGKAEVNRVPNKATRFSISL*CVGGVS
Trigger: ACTCACACCTCCAACACAGCACAGAGAGATGGAAAA...ACGGGTTGCTTTATTCGGCACTCTGTTGACCTCTGCTTTTCCAAAAAGAACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp GTCTGCTCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGGTTCAAACCTTCTCCTTTCCCCTaGACCGAAGTTCGTAGACTT +
Preference number: 4 (lower is better)
Translates to: VCSVIRILSVNAFVIRFKPSPFP*TEVRRL
Trigger: AAGTCTACGAACTTCGGTCCAGGGGAAAGGAGAAGG...TTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
CDS-3UTR CCA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATCTCTCTGTGCTGTGTTaGAGGTGTGAGTCCTGGATG +
Preference number: 4 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHLSVLC*RCESWM
Trigger: CATCCAGGACTCACACCTCCAACACAGCACAGAGAG...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR TCA 90 bp ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTACATGGCCACTGGCCTaGATTCCTGGGAGGGAAACC +
Preference number: 4 (lower is better)
Translates to: IIFFCKTSEAGCTNLFFLTWPLA*IPGRET
Trigger: GGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGT...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCCAAGTACATGGCCACTaGCCTGAATTCCTGGGAGGG +
Preference number: 4 (lower is better)
Translates to: SFSSARLQRQVVQICFSFQVHGH*PEFLGG
Trigger: CCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTG...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
CDS-3UTR GCA 90 bp TCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGGTTCAAATCGGACAAGTCTATCTCTCGATaGGCTTCTTCGAACCTTCTC +
Preference number: 4 (lower is better)
Translates to: SVIRILSVNAFVIRFKSDKSISR*ASSNLL
Trigger: GAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTT...GTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049055.8
CDS-3UTR TCA 90 bp TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACCCCACTGTTGAATGGTaGCTAACATCCACTTTAGCT +
Preference number: 4 (lower is better)
Translates to: LGEGINPMAMTQFSYGYNPTVEW*LTSTLA
Trigger: AGCTAAAGTGGATGTTAGTCACCATTCAACAGTGGG...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR TCA 90 bp GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGA +
Preference number: 4 (lower is better)
Translates to: DKPNGYDSVLLWLQLHPHTMSCS*KYGTGG
Trigger: TCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGT...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTTGCCGGCTGACTCACTaGAAGAAAGAGAACCATCAG +
Preference number: 4 (lower is better)
Translates to: IIFFCKTSEAGCTNLFFLCRLTH*KKENHQ
Trigger: CTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCA...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR TCA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTGGTGTCTGTACACTTaGCTATTTGTTCTATGTCTC +
Preference number: 4 (lower is better)
Translates to: SIHGQQIITWFCRQDSENWCLYT*LFVLCL
Trigger: GAGACATAGAACAAATAGTCAAGTGTACAGACACCA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CCA 90 bp TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCAAGAGAACCATCAGCTaGCACAATGTCTTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: SFSSARLQRQVVQICFSFKRTIS*HNVLLL
Trigger: CAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTT...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR CAA 72 bp ACTTCATTCAGGTTCTCCTTCTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCTCGGTCCACTTCTTTT +
Preference number: 4 (lower is better)
Translates to: TSFRFSFLVSVH*TICSMSRSTSF
Trigger: AAAAGAAGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224420.2
CDS-3UTR GCA 90 bp ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTAAGTCTATCTCTCGATaGGCTTCTTCGAACCTTCTC +
Preference number: 4 (lower is better)
Translates to: IIFFCKTSEAGCTNLFFLKSISR*ASSNLL
Trigger: GAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTT...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
CDS-3UTR GCA 90 bp TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCAACTCTTTTGATATCTaGTACCGTACAGCAGTACTG +
Preference number: 4 (lower is better)
Translates to: SFSSARLQRQVVQICFSFNSFDI*YRTAVL
Trigger: CAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTT...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
3UTR CAA 72 bp CTCAACCATGTACCAAGTCTTCACAAAGTCACGATTTaGCCCTATAACAGTATCAGATTTTTCTTTATTTGC +
Preference number: 4 (lower is better)
Translates to: LNHVPSLHKVTI*PYNSIRFFFIC
Trigger: GCAAATAAAGAAAAATCTGATACTGTTATAGGGCAAAATCGTGACTTTGTGAAGACTTGGTACATGGTTGAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS CCA 90 bp ACATGTCATTGTCTGTACAATTTCCAAAAGCAAGTACATGGCCACTaGCCTGAATTCCTGGGAGGGAAACCGTCCGGTTCTGATTCCTCC +
Preference number: 5 (lower is better)
Translates to: TCHCLYNFQKQVHGH*PEFLGGKPSGSDSS
Trigger: GGAGGAATCAGAACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTGCTTTTGGAAATTGTACAGACAATGACATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
ENSMUST00000224592.2
CDS CCA 90 bp CAAGTCTATCTCTCGATGCGCTTCTTCGAACCTTCTCCTTTCCCCTaGACCGAAGTTCGTAGACTTCAGCATCTTCTTCCAACATGTCAT +
Preference number: 5 (lower is better)
Translates to: QVYLSMRFFEPSPFP*TEVRRLQHLLPTCH
Trigger: ATGACATGTTGGAAGAAGATGCTGAAGTCTACGAACTTCGGTCCAGGGGAAAGGAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
ENSMUST00000224592.2
CDS-3UTR CAA 90 bp AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACTGTACACTTGACTATTaGTTCTATGTCTCGGTCCAC +
Preference number: 5 (lower is better)
Translates to: KQLSDACESPYSICTHDHCTLDY*FYVSVH
Trigger: GTGGACCGAGACATAGAACAAATAGTCAAGTGTACA...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS TCA 90 bp ATGAGATTGTTAACTCTTTTGATATCTGCTACCGTACAGCAGTACTaGAGGGCTACTGCGTTTAGAGTGTCTCCTTCCTGGATATCTTTG +
Preference number: 5 (lower is better)
Translates to: MRLLTLLISATVQQY*RATAFRVSPSWISL
Trigger: CAAAGATATCCAGGAAGGAGACACTCTAAACGCAGTAGCCCTTCAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTTAACAATCTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CAA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATCACAATGTCTTGCTCTaGAAAATACGGAACAGGTGG +
Preference number: 5 (lower is better)
Translates to: SIHGQQIITWFCRQDSENHNVLL*KIRNRW
Trigger: CCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTG...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CAA 90 bp TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTTCAGGTTCTCCTTCTaGGTGTCTGTACACTTGACT +
Preference number: 5 (lower is better)
Translates to: LGEGINPMAMTQFSYGYNFRFSF*VSVHLT
Trigger: AGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAA...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CAA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATAGATTGTTAACTCTTTaGATATCTGCTACCGTACAG +
Preference number: 5 (lower is better)
Translates to: SIHGQQIITWFCRQDSENRLLTL*ISATVQ
Trigger: CTGTACGGTAGCAGATATCAAAAGAGTTAACAATCT...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS-3UTR CAA 90 bp TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCT +
Preference number: 5 (lower is better)
Translates to: SIHGQQIITWFCRQDSENLVSVH*TICSMS
Trigger: AGACATAGAACAAATAGTCAAGTGTACAGACACCAA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2
CDS CCA 72 bp CTCTCGATGCGCTTCTTCGAACCTTCTCCTTTCCCCTaGACCGAAGTTCGTAGACTTCAGCATCTTCTTCCA +
Preference number: 6 (lower is better)
Translates to: LSMRFFEPSPFP*TEVRRLQHLLP
Trigger: TGGAAGAAGATGCTGAAGTCTACGAACTTCGGTCCAGGGGAAAGGAGAAGGTTCGAAGAAGCGCATCGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049055.8
ENSMUST00000224300.2
ENSMUST00000224592.2
CDS TCA 72 bp TTAACTCTTTTGATATCTGCTACCGTACAGCAGTACTaGAGGGCTACTGCGTTTAGAGTGTCTCCTTCCTGG +
Preference number: 6 (lower is better)
Translates to: LTLLISATVQQY*RATAFRVSPSW
Trigger: CCAGGAAGGAGACACTCTAAACGCAGTAGCCCTTCAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224300.2