Pregenerated sensors for LYSMD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035840Ensembl transcript IDs: ENSMUST00000049055.8, ENSMUST00000224300.2, ENSMUST00000224420.2, ENSMUST00000224592.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CTATGTCTCGGTCCACTTCTTTTAGGAAACTGCCGGCTGACTCACTaGAAGAAAGAGAACCATCAGCTGGCACAATGTCTTGCTCTTGAA | + |
Preference number: 1 (lower is better) Translates to: LCLGPLLLGNCRLTH*KKENHQLAQCLALE Trigger: TTCAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCAGTTTCCTAAAAGAAGTGGACCGAGACATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR GCA 90 bp | AACCAATCCCCCAGTCTGCTCCGTAATACGGATCCTTTCGGTGAATaGTTTTGTTATCAGGTTCAAATCGGACCTGTTGTGCTGTTAAGG | + |
Preference number: 1 (lower is better) Translates to: NQSPSLLRNTDPFGE*FCYQVQIGPVVLLR Trigger: CCTTAACAGCACAACAGGTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGACTGGGGGATTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR GCA 90 bp | TATCAACATTATCACTACAGCTGTCCACCAACCAATCCCCCAGTCTaGTCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGG | + |
Preference number: 1 (lower is better) Translates to: YQHYHYSCPPTNPPV*SVIRILSVNAFVIR Trigger: CCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGACTGGGGGATTGGTTGGTGGACAGCTGTAGTGATAATGTTGATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR GCA 90 bp | ACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTaGTGTGTTGGAGGTGTGAGTCCTGGATGCAAGTGTGAAGAACCC | + |
Preference number: 1 (lower is better) Translates to: TGIPFVGPISFSISL*CVGGVSPGCKCEEP Trigger: GGGTTCTTCACACTTGCATCCAGGACTCACACCTCCAACACAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR TCA 90 bp | TCACTGGAAGAAAGAGAACCATCAGCTGGCACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGAGGATGTAAAATGTGTCTTCCTTTC | + |
Preference number: 1 (lower is better) Translates to: SLEEREPSAGTMSCS*KYGTGGGCKMCLPF Trigger: GAAAGGAAGACACATTTTACATCCTCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTTTCTTCCAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR TCA 90 bp | CAGACACGACTTCATTCAGGTTCTCCTTCTTGGTGTCTGTACACTTaGCTATTTGTTCTATGTCTCGGTCCACTTCTTTTAGGAAACTGC | + |
Preference number: 1 (lower is better) Translates to: QTRLHSGSPSWCLYT*LFVLCLGPLLLGNC Trigger: GCAGTTTCCTAAAAGAAGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR-3UTR CCA 90 bp | TGCTGTGTTGGAGGTGTGAGTCCTGGATGCAAGTGTGAAGAACCCACTGTTGAAAAGAGAACCATCAGCTaGCACAATGTCTTGCTCTTG | + |
Preference number: 2 (lower is better) Translates to: CCVGGVSPGCKCEEPTVEKRTIS*HNVLLL Trigger: CAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTT...TTCAACAGTGGGTTCTTCACACTTGCATCCAGGACTCACACCTCCAACACAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR CAA 90 bp | TGTTGTGCTGTTAAGGCAGACACGACTTCATTCAGGTTCTCCTTCTaGGTGTCTGTACACTTGACTATTTGTTCTATGTCTCGGTCCACT | + |
Preference number: 2 (lower is better) Translates to: CCAVKADTTSFRFSF*VSVHLTICSMSRST Trigger: AGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGCCTTAACAGCACAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR-3UTR CCA 90 bp | TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACCCACGCCACACACCTTaGCATATGTTTCTCCATTGG | + |
Preference number: 2 (lower is better) Translates to: LGEGINPMAMTQFSYGYNPRHTP*HMFLHW Trigger: CCAATGGAGAAACATATGCCAAGGTGTGTGGCGTGG...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR CAA 90 bp | GCAGACACGACTTCATTCAGGTTCTCCTTCTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCTCGGTCCACTTCTTTTAGGAAACTG | + |
Preference number: 2 (lower is better) Translates to: ADTTSFRFSFLVSVH*TICSMSRSTSFRKL Trigger: CAGTTTCCTAAAAGAAGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR-3UTR TCA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATATGAAGAAGTGGAGGTaGGGTTGCAGAGCTAGTCAT | + |
Preference number: 2 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHMKKWR*GCRASH Trigger: ATGACTAGCTCTGCAACCTCACCTCCACTTCTTCAT...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR TCA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATGTAGGGGCCTTAAAATaGCTGACTTCCATGTCAGTC | + |
Preference number: 2 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHVGALK*LTSMSV Trigger: GACTGACATGGAAGTCAGTCATTTTAAGGCCCCTAC...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR TCA 90 bp | CTGACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTGACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGA | + |
Preference number: 2 (lower is better) Translates to: LTNRYSFCWTNFIFHLSVTMSCS*KYGTGG Trigger: TCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGT...CACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR-3UTR GCA 90 bp | ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTGGTGTGAGTCCTGGATaGAAGTGTGAAGAACCCACT | + |
Preference number: 2 (lower is better) Translates to: IIFFCKTSEAGCTNLFFLGVSPG*KCEEPT Trigger: AGTGGGTTCTTCACACTTGCATCCAGGACTCACACC...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR-3UTR TCA 90 bp | ACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTGCTGTGGTGTCTGTACACTTaGCTATTTGTTCTATGTCTC | + |
Preference number: 2 (lower is better) Translates to: TNRYSFCWTNFIFHLSVLWCLYT*LFVLCL Trigger: GAGACATAGAACAAATAGTCAAGTGTACAGACACCA...CAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR-3UTR CCA 90 bp | TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACCCCAATGACACTATTTaGGGGGTCTTAAGATATCTA | + |
Preference number: 2 (lower is better) Translates to: LGEGINPMAMTQFSYGYNPNDTI*GVLRYL Trigger: TAGATATCTTAAGACCCCCCAAATAGTGTCATTGGG...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR TCA 90 bp | ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTGTTGTCGGATGCATGTaGGTCACCATATTCCATATG | + |
Preference number: 2 (lower is better) Translates to: IIFFCKTSEAGCTNLFFLVVGCM*VTIFHM Trigger: CATATGGAATATGGTGACTCACATGCATCCGACAAC...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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3UTR-3UTR TCA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTCCTTTAAATATAAGTaGTCAGACCCTTCGATCACA | + |
Preference number: 2 (lower is better) Translates to: SIHGQQIITWFCRQDSENSFKYK*SDPSIT Trigger: TGTGATCGAAGGGTCTGATCACTTATATTTAAAGGA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR GCA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTATAGCATATGCAGGTaGTATAGACAGTCCATTTGT | + |
Preference number: 2 (lower is better) Translates to: SIHGQQIITWFCRQDSENYSICR*YRQSIC Trigger: ACAAATGGACTGTCTATAGCACCTGCATATGCTATA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR GCA 90 bp | TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCCCTCAATATAGCATATaGAGGTGCTATAGACAGTCC | + |
Preference number: 2 (lower is better) Translates to: SFSSARLQRQVVQICFSFPQYSI*RCYRQS Trigger: GGACTGTCTATAGCACCTGCATATGCTATATTGAGG...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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3UTR-3UTR GCA 90 bp | TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTTATGTAGCCTGTTCTaGCCTGAAATCTGCATTTTT | + |
Preference number: 2 (lower is better) Translates to: LGEGINPMAMTQFSYGYNLCSLF*PEICIF Trigger: AAAAATGCAGATTTCAGGGCAGAACAGGCTACATAA...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR CCA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATGCAGTTGCCAAAAATTaGCATAGTTTGCAAATGTAC | + |
Preference number: 2 (lower is better) Translates to: SIHGQQIITWFCRQDSENAVAKN*HSLQMY Trigger: GTACATTTGCAAACTATGCCAATTTTTGGCAACTGC...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR GCA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATTCCTTCATTCATTTATaGTCAAAAGTGAAGACAGAC | + |
Preference number: 2 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHSFIHL*SKVKTD Trigger: GTCTGTCTTCACTTTTGAGCATAAATGAATGAAGGA...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR TCA 90 bp | ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTTTAAGGAATAGATCTTaGCGAATTACAGTGTCCGTG | + |
Preference number: 2 (lower is better) Translates to: IIFFCKTSEAGCTNLFFLLRNRS*RITVSV Trigger: CACGGACACTGTAATTCGTCAAGATCTATTCCTTAA...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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3UTR GCA 72 bp | TATCACTACAGCTGTCCACCAACCAATCCCCCAGTCTaGTCCGTAATACGGATCCTTTCGGTGAATGCTTTT | + |
Preference number: 3 (lower is better) Translates to: YHYSCPPTNPPV*SVIRILSVNAF Trigger: AAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGACTGGGGGATTGGTTGGTGGACAGCTGTAGTGATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR-3UTR CAA 90 bp | CAGCTCACTGTTACGTTTTGTGTTGAGCATCATGTGCCTGAGGGTCTTGCCTATTTCAGGTTCTCCTTCTaGGTGTCTGTACACTTGACT | + |
Preference number: 3 (lower is better) Translates to: QLTVTFCVEHHVPEGLAYFRFSF*VSVHLT Trigger: AGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAA...ATAGGCAAGACCCTCAGGCACATGATGCTCAACACAAAACGTAACAGTGAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR GCA 72 bp | GCAGGGGTACGGCCTGACCAGCCTCAATATAGCATATaGAGGTGCTATAGACAGTCCATTTGTAAAAGTTCA | + |
Preference number: 3 (lower is better) Translates to: AGVRPDQPQYSI*RCYRQSICKSS Trigger: TGAACTTTTACAAATGGACTGTCTATAGCACCTGCATATGCTATATTGAGGCTGGTCAGGCCGTACCCCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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3UTR-3UTR CAA 90 bp | ACCTGTTGTGCTGTTAAGGCAGACACGACTTCATTCAGGTTCTCCTTCTTGGTGTGTACACTTGACTATTaGTTCTATGTCTCGGTCCAC | + |
Preference number: 3 (lower is better) Translates to: TCCAVKADTTSFRFSFLVCTLDY*FYVSVH Trigger: GTGGACCGAGACATAGAACAAATAGTCAAGTGTACA...CACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGCCTTAACAGCACAACAGGT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR GCA 72 bp | TTTGTTCTATGTCTCGGTCCACTTCTTTTAGGAAACTaGCGGCTGACTCACTGGAAGAAAGAGAACCATCAG | + |
Preference number: 3 (lower is better) Translates to: FVLCLGPLLLGN*RLTHWKKENHQ Trigger: CTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCAGTTTCCTAAAAGAAGTGGACCGAGACATAGAACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR TCA 72 bp | GAAAGAGAACCATCAGCTGGCACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGAGGATGTAAAATGTGT | + |
Preference number: 3 (lower is better) Translates to: EREPSAGTMSCS*KYGTGGGCKMC Trigger: ACACATTTTACATCCTCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR-3UTR CAA 90 bp | ACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTGTGCTGCACAATGTCTTGCTCTaGAAAATACGGAACAGGTGG | + |
Preference number: 3 (lower is better) Translates to: TNRYSFCWTNFIFHLSVLHNVLL*KIRNRW Trigger: CCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTG...CAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR-3UTR CAA 90 bp | CAGGTTCTTTTTGGAAAAGCAGAGGTCAACAGAGTGCCGAATAAAGCAACCCGTCAGGTATTCCTTTTGTaGGACCAATTTCATTTTCCA | + |
Preference number: 3 (lower is better) Translates to: QVLFGKAEVNRVPNKATRQVFLL*DQFHFP Trigger: TGGAAAATGAAATTGGTCCAACAAAAGGAATACCTG...ACGGGTTGCTTTATTCGGCACTCTGTTGACCTCTGCTTTTCCAAAAAGAACCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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3UTR TCA 72 bp | ACATTAGATGTAGAAAATGCCACTATTAAGCCCTTTTaGCCACGCCACACACCTTGGCATATGTTTCTCCAT | + |
Preference number: 3 (lower is better) Translates to: TLDVENATIKPF*PRHTPWHMFLH Trigger: ATGGAGAAACATATGCCAAGGTGTGTGGCGTGGTCAAAAGGGCTTAATAGTGGCATTTTCTACATCTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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3UTR-3UTR CAA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATGACTTCAGAGGCAGGTaGTACAAATTTGTTTTTCCT | + |
Preference number: 3 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHDFRGR*YKFVFP Trigger: AGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTC...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR-3UTR CAA 90 bp | TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTATCTGTTTCTACATTaGCTTTCATGGCACATATGC | + |
Preference number: 3 (lower is better) Translates to: LGEGINPMAMTQFSYGYNYLFLH*LSWHIC Trigger: GCATATGTGCCATGAAAGCAAATGTAGAAACAGATA...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR CCA 72 bp | GATCAAATGGGAAGTTTCCAACCCAATGACACTATTTaGGGGGTCTTAAGATATCTATTTCTTAGCCTGTAT | + |
Preference number: 3 (lower is better) Translates to: DQMGSFQPNDTI*GVLRYLFLSLY Trigger: ATACAGGCTAAGAAATAGATATCTTAAGACCCCCCAAATAGTGTCATTGGGTTGGAAACTTCCCATTTGATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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3UTR-3UTR CAA 90 bp | TTGCTGACCAACAGGTATTCCTTTTGTTGGACCAATTTCATTTTCCATCTCTCTTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCT | + |
Preference number: 3 (lower is better) Translates to: LLTNRYSFCWTNFIFHLSLVSVH*TICSMS Trigger: AGACATAGAACAAATAGTCAAGTGTACAGACACCAA...AGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGAATACCTGTTGGTCAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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3UTR GCA 72 bp | CCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTaGATCCACATACTTGAACACTTAAAAATTAAAGCC | + |
Preference number: 3 (lower is better) Translates to: PMAMTQFSYGYN*IHILEHLKIKA Trigger: GGCTTTAATTTTTAAGTGTTCAAGTATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR TCA 90 bp | AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACGCTGTGTTGGAGGTGTaGGTCCTGGATGCAAGTGTG | + |
Preference number: 4 (lower is better) Translates to: KQLSDACESPYSICTHDHAVLEV*VLDASV Trigger: CACACTTGCATCCAGGACTCACACCTCCAACACAGC...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACACTGGCCTGAATTCCTaGGAGGGAAACCGTCCGGTT | + |
Preference number: 4 (lower is better) Translates to: KQLSDACESPYSICTHDHTGLNS*EGNRPV Trigger: AACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGT...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | CAGGTTCTTTTTGGAAAAGCAGAGGTCAACAGAGTGCCGAATAAAGCAACCCGTCAAGTACATGGCCACTaGCCTGAATTCCTGGGAGGG | + |
Preference number: 4 (lower is better) Translates to: QVLFGKAEVNRVPNKATRQVHGH*PEFLGG Trigger: CCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTG...ACGGGTTGCTTTATTCGGCACTCTGTTGACCTCTGCTTTTCCAAAAAGAACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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CDS-3UTR TCA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATACATGGCCACTGGCCTaGATTCCTGGGAGGGAAACC | + |
Preference number: 4 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHTWPLA*IPGRET Trigger: GGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGT...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR GCA 90 bp | AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACGGTGTGAGTCCTGGATaGAAGTGTGAAGAACCCACT | + |
Preference number: 4 (lower is better) Translates to: KQLSDACESPYSICTHDHGVSPG*KCEEPT Trigger: AGTGGGTTCTTCACACTTGCATCCAGGACTCACACC...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | TCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGGTTCAAATCGGACACTGGCCTGAATTCCTaGGAGGGAAACCGTCCGGTT | + |
Preference number: 4 (lower is better) Translates to: SVIRILSVNAFVIRFKSDTGLNS*EGNRPV Trigger: AACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGT...GTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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CDS-3UTR GCA 90 bp | CAGGTTCTTTTTGGAAAAGCAGAGGTCAACAGAGTGCCGAATAAAGCAACCCGTTTTTCCATCTCTCTGTaGTGTGTTGGAGGTGTGAGT | + |
Preference number: 4 (lower is better) Translates to: QVLFGKAEVNRVPNKATRFSISL*CVGGVS Trigger: ACTCACACCTCCAACACAGCACAGAGAGATGGAAAA...ACGGGTTGCTTTATTCGGCACTCTGTTGACCTCTGCTTTTCCAAAAAGAACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | GTCTGCTCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGGTTCAAACCTTCTCCTTTCCCCTaGACCGAAGTTCGTAGACTT | + |
Preference number: 4 (lower is better) Translates to: VCSVIRILSVNAFVIRFKPSPFP*TEVRRL Trigger: AAGTCTACGAACTTCGGTCCAGGGGAAAGGAGAAGG...TTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGAGCAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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CDS-3UTR CCA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATCTCTCTGTGCTGTGTTaGAGGTGTGAGTCCTGGATG | + |
Preference number: 4 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHLSVLC*RCESWM Trigger: CATCCAGGACTCACACCTCCAACACAGCACAGAGAG...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR TCA 90 bp | ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTACATGGCCACTGGCCTaGATTCCTGGGAGGGAAACC | + |
Preference number: 4 (lower is better) Translates to: IIFFCKTSEAGCTNLFFLTWPLA*IPGRET Trigger: GGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGT...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCCAAGTACATGGCCACTaGCCTGAATTCCTGGGAGGG | + |
Preference number: 4 (lower is better) Translates to: SFSSARLQRQVVQICFSFQVHGH*PEFLGG Trigger: CCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTG...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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CDS-3UTR GCA 90 bp | TCCGTAATACGGATCCTTTCGGTGAATGCTTTTGTTATCAGGTTCAAATCGGACAAGTCTATCTCTCGATaGGCTTCTTCGAACCTTCTC | + |
Preference number: 4 (lower is better) Translates to: SVIRILSVNAFVIRFKSDKSISR*ASSNLL Trigger: GAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTT...GTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049055.8 |
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CDS-3UTR TCA 90 bp | TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACCCCACTGTTGAATGGTaGCTAACATCCACTTTAGCT | + |
Preference number: 4 (lower is better) Translates to: LGEGINPMAMTQFSYGYNPTVEW*LTSTLA Trigger: AGCTAAAGTGGATGTTAGTCACCATTCAACAGTGGG...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR TCA 90 bp | GATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTGCATCCACATACAATGTCTTGCTCTTaGAAATACGGAACAGGTGGA | + |
Preference number: 4 (lower is better) Translates to: DKPNGYDSVLLWLQLHPHTMSCS*KYGTGG Trigger: TCCACCTGTTCCGTATTTTCAAGAGCAAGACATTGT...ATGTGGATGCAGTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTTGCCGGCTGACTCACTaGAAGAAAGAGAACCATCAG | + |
Preference number: 4 (lower is better) Translates to: IIFFCKTSEAGCTNLFFLCRLTH*KKENHQ Trigger: CTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCA...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR TCA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTGGTGTCTGTACACTTaGCTATTTGTTCTATGTCTC | + |
Preference number: 4 (lower is better) Translates to: SIHGQQIITWFCRQDSENWCLYT*LFVLCL Trigger: GAGACATAGAACAAATAGTCAAGTGTACAGACACCA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CCA 90 bp | TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCAAGAGAACCATCAGCTaGCACAATGTCTTGCTCTTG | + |
Preference number: 4 (lower is better) Translates to: SFSSARLQRQVVQICFSFKRTIS*HNVLLL Trigger: CAAGAGCAAGACATTGTGCCAGCTGATGGTTCTCTT...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR CAA 72 bp | ACTTCATTCAGGTTCTCCTTCTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCTCGGTCCACTTCTTTT | + |
Preference number: 4 (lower is better) Translates to: TSFRFSFLVSVH*TICSMSRSTSF Trigger: AAAAGAAGTGGACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224420.2 |
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CDS-3UTR GCA 90 bp | ATCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTAAGTCTATCTCTCGATaGGCTTCTTCGAACCTTCTC | + |
Preference number: 4 (lower is better) Translates to: IIFFCKTSEAGCTNLFFLKSISR*ASSNLL Trigger: GAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTT...AAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 |
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CDS-3UTR GCA 90 bp | TCATTTTCTTCTGCAAGACTTCAGAGGCAGGTTGTACAAATTTGTTTTTCCTTCAACTCTTTTGATATCTaGTACCGTACAGCAGTACTG | + |
Preference number: 4 (lower is better) Translates to: SFSSARLQRQVVQICFSFNSFDI*YRTAVL Trigger: CAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTT...GAAGGAAAAACAAATTTGTACAACCTGCCTCTGAAGTCTTGCAGAAGAAAATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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3UTR CAA 72 bp | CTCAACCATGTACCAAGTCTTCACAAAGTCACGATTTaGCCCTATAACAGTATCAGATTTTTCTTTATTTGC | + |
Preference number: 4 (lower is better) Translates to: LNHVPSLHKVTI*PYNSIRFFFIC Trigger: GCAAATAAAGAAAAATCTGATACTGTTATAGGGCAAAATCGTGACTTTGTGAAGACTTGGTACATGGTTGAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS CCA 90 bp | ACATGTCATTGTCTGTACAATTTCCAAAAGCAAGTACATGGCCACTaGCCTGAATTCCTGGGAGGGAAACCGTCCGGTTCTGATTCCTCC | + |
Preference number: 5 (lower is better) Translates to: TCHCLYNFQKQVHGH*PEFLGGKPSGSDSS Trigger: GGAGGAATCAGAACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTGCTTTTGGAAATTGTACAGACAATGACATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 ENSMUST00000224592.2 |
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CDS CCA 90 bp | CAAGTCTATCTCTCGATGCGCTTCTTCGAACCTTCTCCTTTCCCCTaGACCGAAGTTCGTAGACTTCAGCATCTTCTTCCAACATGTCAT | + |
Preference number: 5 (lower is better) Translates to: QVYLSMRFFEPSPFP*TEVRRLQHLLPTCH Trigger: ATGACATGTTGGAAGAAGATGCTGAAGTCTACGAACTTCGGTCCAGGGGAAAGGAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 ENSMUST00000224592.2 |
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CDS-3UTR CAA 90 bp | AAGCAGTTGTCGGATGCATGTGAGTCACCATATTCCATATGCACACATGACCACTGTACACTTGACTATTaGTTCTATGTCTCGGTCCAC | + |
Preference number: 5 (lower is better) Translates to: KQLSDACESPYSICTHDHCTLDY*FYVSVH Trigger: GTGGACCGAGACATAGAACAAATAGTCAAGTGTACA...GTGGTCATGTGTGCATATGGAATATGGTGACTCACATGCATCCGACAACTGCTT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS TCA 90 bp | ATGAGATTGTTAACTCTTTTGATATCTGCTACCGTACAGCAGTACTaGAGGGCTACTGCGTTTAGAGTGTCTCCTTCCTGGATATCTTTG | + |
Preference number: 5 (lower is better) Translates to: MRLLTLLISATVQQY*RATAFRVSPSWISL Trigger: CAAAGATATCCAGGAAGGAGACACTCTAAACGCAGTAGCCCTTCAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTTAACAATCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CAA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATCACAATGTCTTGCTCTaGAAAATACGGAACAGGTGG | + |
Preference number: 5 (lower is better) Translates to: SIHGQQIITWFCRQDSENHNVLL*KIRNRW Trigger: CCACCTGTTCCGTATTTTCAAGAGCAAGACATTGTG...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CAA 90 bp | TTAGGTGAAGGGATAAACCCAATGGCTATGACTCAGTTCTCTTATGGTTACAACTTCAGGTTCTCCTTCTaGGTGTCTGTACACTTGACT | + |
Preference number: 5 (lower is better) Translates to: LGEGINPMAMTQFSYGYNFRFSF*VSVHLT Trigger: AGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAA...GTTGTAACCATAAGAGAACTGAGTCATAGCCATTGGGTTTATCCCTTCACCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CAA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATAGATTGTTAACTCTTTaGATATCTGCTACCGTACAG | + |
Preference number: 5 (lower is better) Translates to: SIHGQQIITWFCRQDSENRLLTL*ISATVQ Trigger: CTGTACGGTAGCAGATATCAAAAGAGTTAACAATCT...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS-3UTR CAA 90 bp | TCTATACATGGCCAGCAGATCATAACCTGGTTTTGTAGACAGGACAGTGAAAATTTGGTGTCTGTACACTaGACTATTTGTTCTATGTCT | + |
Preference number: 5 (lower is better) Translates to: SIHGQQIITWFCRQDSENLVSVH*TICSMS Trigger: AGACATAGAACAAATAGTCAAGTGTACAGACACCAA...ATTTTCACTGTCCTGTCTACAAAACCAGGTTATGATCTGCTGGCCATGTATAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |
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CDS CCA 72 bp | CTCTCGATGCGCTTCTTCGAACCTTCTCCTTTCCCCTaGACCGAAGTTCGTAGACTTCAGCATCTTCTTCCA | + |
Preference number: 6 (lower is better) Translates to: LSMRFFEPSPFP*TEVRRLQHLLP Trigger: TGGAAGAAGATGCTGAAGTCTACGAACTTCGGTCCAGGGGAAAGGAGAAGGTTCGAAGAAGCGCATCGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049055.8 ENSMUST00000224300.2 ENSMUST00000224592.2 |
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CDS TCA 72 bp | TTAACTCTTTTGATATCTGCTACCGTACAGCAGTACTaGAGGGCTACTGCGTTTAGAGTGTCTCCTTCCTGG | + |
Preference number: 6 (lower is better) Translates to: LTLLISATVQQY*RATAFRVSPSW Trigger: CCAGGAAGGAGACACTCTAAACGCAGTAGCCCTTCAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224300.2 |