Pregenerated sensors for LYSMD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032184Ensembl transcript IDs: ENSMUST00000034702.6, ENSMUST00000214961.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGCAGACACTTCCTCGGGTTGCGCAGGCTTGGGGTCCGGGTCCTaGGGACTGGGAGGGGGCAGTTCTTCCTCAGACACTACAGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: LADTSSGCAGLGSGS*GLGGGSSSSDTTGS Trigger: GGAGCCTGTAGTGTCTGAGGAAGAACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCGAGGAAGTGTCTGCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR CCA 90 bp | ACACTTCCTCGGGTTGCGCAGGCTTGGGGTCCGGGTCCTGAGGACTaGGAGGGGGCAGTTCTTCCTCAGACACTACAGGCTCCTCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: TLPRVAQAWGPGPED*EGAVLPQTLQAPLP Trigger: AGGAAGAGGAGCCTGTAGTGTCTGAGGAAGAACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCGAGGAAGTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR CCA 90 bp | TTTGCAGGAAATCTCTGGCAGACACTTCCTCGGGTTGCGCAGGCTTaGGGTCCGGGTCCTGAGGACTGGGAGGGGGCAGTTCTTCCTCAG | + |
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Preference number: 1 (lower is better) Translates to: FAGNLWQTLPRVAQA*GPGPEDWEGAVLPQ Trigger: CTGAGGAAGAACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCGAGGAAGTGTCTGCCAGAGATTTCCTGCAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR GCA 90 bp | TTCCTGGCTGCCTGTGTTGAGAGTTTAATCTGTAAGTCCAGTCTTTaGAGGAAATCTCTGGCAGACACTTCCTCGGGTTGCGCAGGCTTG | + |
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Preference number: 1 (lower is better) Translates to: FLAACVESLICKSSL*RKSLADTSSGCAGL Trigger: CAAGCCTGCGCAACCCGAGGAAGTGTCTGCCAGAGATTTCCTGCAAAGACTGGACTTACAGATTAAACTCTCAACACAGGCAGCCAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR-3UTR CCA 90 bp | GTCCAGCCATTCTGTGATCTGGATCAGTCCGCTGGCCAGTCACTAACTATGATACCGGGTCCTGAGGACTaGGAGGGGGCAGTTCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: VQPFCDLDQSAGQSLTMIPGPED*EGAVLP Trigger: AGGAAGAACTGCCCCCTCCCAGTCCTCAGGACCCGG...TATCATAGTTAGTGACTGGCCAGCGGACTGATCCAGATCACAGAATGGCTGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAGTTTAATCTGTAAGTCCAGTCTTTGCAGGAAATCTCTGGCAGACACTTCCTTGGGGTCCGGGTCCTaGGGACTGGGAGGGGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: ESLICKSSLCRKSLADTSLGSGS*GLGGGS Trigger: ACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAA...GGAAGTGTCTGCCAGAGATTTCCTGCAAAGACTGGACTTACAGATTAAACTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCTGGCTGCCTGTGTTGAGAGTTTAATCTGTAAGTCCAGTCTTTGCAGGAAAACAGGCTCCTCTTCCTaGCAAAAGCTGCTGTCGACA | + |
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Preference number: 2 (lower is better) Translates to: FLAACVESLICKSSLCRKTGSSS*QKLLST Trigger: TGTCGACAGCAGCTTTTGTCAGGAAGAGGAGCCTGT...TTTCCTGCAAAGACTGGACTTACAGATTAAACTCTCAACACAGGCAGCCAGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR TCA 72 bp | ACTTCCTCGGGTTGCGCAGGCTTGGGGTCCGGGTCCTaGGGACTGGGAGGGGGCAGTTCTTCCTCAGACACT | + |
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Preference number: 3 (lower is better) Translates to: TSSGCAGLGSGS*GLGGGSSSSDT Trigger: AGTGTCTGAGGAAGAACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCGAGGAAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| 3UTR CCA 72 bp | AATCTCTGGCAGACACTTCCTCGGGTTGCGCAGGCTTaGGGTCCGGGTCCTGAGGACTGGGAGGGGGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: NLWQTLPRVAQA*GPGPEDWEGAV Trigger: AACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCGAGGAAGTGTCTGCCAGAGATT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR GCA 90 bp | AAGGTGCGCTACGGGAGTCCAGGGGCAGCGCTGCCCCTGAACCAGAGCCGGCGGCCCGCACGCTGGCCGTaGTGCCGTACGAGCGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: KVRYGSPGAALPLNQSRRPARWP*CRTSGS Trigger: AGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGG...CCGCCGGCTCTGGTTCAGGGGCAGCGCTGCCCCTGGACTCCCGTAGCGCACCTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR TCA 90 bp | AGCTCGAAGGTGCGCTACGGGAGTCCAGGGGCAGCGCTGCCCCTGAACCAGAGCCCACATGGCGCTCGATaGCGCCGGCGCCCAGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: SSKVRYGSPGAALPLNQSPHGAR*RRRPEA Trigger: CGCCTCTGGGCGCCGGCGTCATCGAGCGCCATGTGG...GCTCTGGTTCAGGGGCAGCGCTGCCCCTGGACTCCCGTAGCGCACCTTCGAGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CCA 90 bp | AGGGGCAGCGCTGCCCCTGAACCAGAGCCGGCGGGTTCTTTAGGGTCCAGCCATGAGGCGCCCGCACGCTaGCCGTGCTGCCGTACGAGC | + |
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Preference number: 4 (lower is better) Translates to: RGSAAPEPEPAGSLGSSHEAPAR*PCCRTS Trigger: GCTCGTACGGCAGCACGGCCAGCGTGCGGGCGCCTC...ATGGCTGGACCCTAAAGAACCCGCCGGCTCTGGTTCAGGGGCAGCGCTGCCCCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR TCA 90 bp | AGCTCGAAGGTGCGCTACGGGAGTCCAGGGGCAGCGCTGCCCCTGAACCAGAGCTTGGGGTCCGGGTCCTaGGGACTGGGAGGGGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SSKVRYGSPGAALPLNQSLGSGS*GLGGGS Trigger: ACTGCCCCCTCCCAGTCCTCAGGACCCGGACCCCAA...GCTCTGGTTCAGGGGCAGCGCTGCCCCTGGACTCCCGTAGCGCACCTTCGAGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR GCA 90 bp | AGGGGCAGCGCTGCCCCTGAACCAGAGCCGGCGGGTTCTTTAGGGTCCAGCCATGCACGCTGGCCGTGCTaGCGTACGAGCGGGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: RGSAAPEPEPAGSLGSSHARWPC*RTSGSW Trigger: CCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGC...ATGGCTGGACCCTAAAGAACCCGCCGGCTCTGGTTCAGGGGCAGCGCTGCCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CCA 90 bp | AGGGGCAGCGCTGCCCCTGAACCAGAGCCGGCGGGTTCTTTAGGGTCCAGCCATCCGGGTCCTGAGGACTaGGAGGGGGCAGTTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RGSAAPEPEPAGSLGSSHPGPED*EGAVLP Trigger: AGGAAGAACTGCCCCCTCCCAGTCCTCAGGACCCGG...ATGGCTGGACCCTAAAGAACCCGCCGGCTCTGGTTCAGGGGCAGCGCTGCCCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR TCA 90 bp | GAACCAGAGCCGGCGGGTTCTTTAGGGTCCAGCCATTCTGTGATCTGGATCAGTTTGAGCGCGATGCCCTaGAGCGTGTCCCCGGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: EPEPAGSLGSSHSVIWISLSAMP*SVSPAR Trigger: CCGCGCCGGGGACACGCTTCAGGGCATCGCGCTCAA...ACTGATCCAGATCACAGAATGGCTGGACCCTAAAGAACCCGCCGGCTCTGGTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CCA 90 bp | GAACCAGAGCCGGCGGGTTCTTTAGGGTCCAGCCATTCTGTGATCTGGATCAGTCGGGTTGCGCAGGCTTaGGGTCCGGGTCCTGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: EPEPAGSLGSSHSVIWISRVAQA*GPGPED Trigger: GTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCG...ACTGATCCAGATCACAGAATGGCTGGACCCTAAAGAACCCGCCGGCTCTGGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| 3UTR CAA 72 bp | TCTTTGCAGGAAATCTCTGGCAGACACTTCCTCGGGTaGCGCAGGCTTGGGGTCCGGGTCCTGAGGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: SLQEISGRHFLG*RRLGVRVLRTG Trigger: CCCAGTCCTCAGGACCCGGACCCCAAGCCTGCGCAACCCGAGGAAGTGTCTGCCAGAGATTTCCTGCAAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CCA 90 bp | AGTCCATTAAACAGCAAAGGCTTCTCCGACAGGATTGGGATGCTCAGCGTCTTCCGTACGAGCGGGTCTTaGTGCGGGCCAGGCTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SPLNSKGFSDRIGMLSVFRTSGS*CGPGSA Trigger: CGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACG...GAAGACGCTGAGCATCCCAATCCTGTCGGAGAAGCCTTTGCTGTTTAATGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR TCA 90 bp | CGGAGAATCAATGGAGTTAAGTCCATTAAACAGCAAAGGCTTCTCCGACAGGATCCACATGGCGCTCGATaGCGCCGGCGCCCAGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: RRINGVKSIKQQRLLRQDPHGAR*RRRPEA Trigger: CGCCTCTGGGCGCCGGCGTCATCGAGCGCCATGTGG...ATCCTGTCGGAGAAGCCTTTGCTGTTTAATGGACTTAACTCCATTGATTCTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CCA 90 bp | ACAAAAGCTGCTGTCGACAGTTTCACTTTCCGGAGAATCAATGGAGTTAAGTCCCCTCGGGCTCCGAGGTaGAGCGAGAGCGCGGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: TKAAVDSFTFRRINGVKSPRAPR*SESAAE Trigger: CTCCGCCGCGCTCTCGCTCCACCTCGGAGCCCGAGG...GGACTTAACTCCATTGATTCTCCGGAAAGTGAAACTGTCGACAGCAGCTTTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR GCA 90 bp | CTGACAAAAGCTGCTGTCGACAGTTTCACTTTCCGGAGAATCAATGGAGTTAAGCCCGCACGCTGGCCGTaGTGCCGTACGAGCGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: LTKAAVDSFTFRRINGVKPARWP*CRTSGS Trigger: AGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGG...CTTAACTCCATTGATTCTCCGGAAAGTGAAACTGTCGACAGCAGCTTTTGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CCA 90 bp | GAGTCTCTGATGCTTTCTGTATCTACAAAAGCCGGTCTAAAACTACCACCATCTCCTCGGGCTCCGAGGTaGAGCGAGAGCGCGGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: ESLMLSVSTKAGLKLPPSPRAPR*SESAAE Trigger: CTCCGCCGCGCTCTCGCTCCACCTCGGAGCCCGAGG...AGATGGTGGTAGTTTTAGACCGGCTTTTGTAGATACAGAAAGCATCAGAGACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR TCA 90 bp | ACAGTTTCACTTTCCGGAGAATCAATGGAGTTAAGTCCATTAAACAGCAAAGGCTTGAGCGCGATGCCCTaGAGCGTGTCCCCGGCGCGG | + |
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Preference number: 4 (lower is better) Translates to: TVSLSGESMELSPLNSKGLSAMP*SVSPAR Trigger: CCGCGCCGGGGACACGCTTCAGGGCATCGCGCTCAA...GCCTTTGCTGTTTAATGGACTTAACTCCATTGATTCTCCGGAAAGTGAAACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR GCA 90 bp | CTGTCGACAGTTTCACTTTCCGGAGAATCAATGGAGTTAAGTCCATTAAACAGCGCACGCTGGCCGTGCTaGCGTACGAGCGGGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LSTVSLSGESMELSPLNSARWPC*RTSGSW Trigger: CCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGC...GCTGTTTAATGGACTTAACTCCATTGATTCTCCGGAAAGTGAAACTGTCGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CCA 90 bp | CTGTCGACAGTTTCACTTTCCGGAGAATCAATGGAGTTAAGTCCATTAAACAGCACCCGGTGCTCCACATaGCGCTCGATGACGCCGGCG | + |
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Preference number: 4 (lower is better) Translates to: LSTVSLSGESMELSPLNSTRCST*RSMTPA Trigger: CGCCGGCGTCATCGAGCGCCATGTGGAGCACCGGGT...GCTGTTTAATGGACTTAACTCCATTGATTCTCCGGAAAGTGAAACTGTCGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR GCA 90 bp | ATCATGTCTTCCACACATTTAGGATCTCATCAGGAAATAAACATAGCTTTTGGCCCGGCGCGGACCCGGTaGTCCACATGGCGCTCGATG | + |
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Preference number: 4 (lower is better) Translates to: IMSSTHLGSHQEINIAFGPARTR*STWRSM Trigger: CATCGAGCGCCATGTGGAGCACCGGGTCCGCGCCGG...GCCAAAAGCTATGTTTATTTCCTGATGAGATCCTAAATGTGTGGAAGACATGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CCA 90 bp | TCACTCCACAGTCATCATGTCTTCCACACATTTAGGATCTCATCAGGAAATAAACGTACGAGCGGGTCTTaGTGCGGGCCAGGCTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SLHSHHVFHTFRISSGNKRTSGS*CGPGSA Trigger: CGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACG...TTTATTTCCTGATGAGATCCTAAATGTGTGGAAGACATGATGACTGTGGAGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CCA 90 bp | GCCGGTCTAAAACTACCACCATCTACAAAAGTGAAAGGCGTTAGAATAAATACAACCCGGTGCTCCACATaGCGCTCGATGACGCCGGCG | + |
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Preference number: 4 (lower is better) Translates to: AGLKLPPSTKVKGVRINTTRCST*RSMTPA Trigger: CGCCGGCGTCATCGAGCGCCATGTGGAGCACCGGGT...TGTATTTATTCTAACGCCTTTCACTTTTGTAGATGGTGGTAGTTTTAGACCGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR TCA 90 bp | TCACTCCACAGTCATCATGTCTTCCACACATTTAGGATCTCATCAGGAAATAAACCCTGCTCTCTTCTTTaGGTTTCCTGGCTGCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLHSHHVFHTFRISSGNKPCSLL*VSWLPV Trigger: CACAGGCAGCCAGGAAACTCAAAGAAGAGAGCAGGG...TTTATTTCCTGATGAGATCCTAAATGTGTGGAAGACATGATGACTGTGGAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR TCA 90 bp | GCCGGTCTAAAACTACCACCATCTACAAAAGTGAAAGGCGTTAGAATAAATACAACAGGCTCCTCTTCCTaGCAAAAGCTGCTGTCGACA | + |
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Preference number: 4 (lower is better) Translates to: AGLKLPPSTKVKGVRINTTGSSS*QKLLST Trigger: TGTCGACAGCAGCTTTTGTCAGGAAGAGGAGCCTGT...TGTATTTATTCTAACGCCTTTCACTTTTGTAGATGGTGGTAGTTTTAGACCGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CCA 90 bp | GAGTCTCTGATGCTTTCTGTATCTACAAAAGCCGGTCTAAAACTACCACCATCTTTTGCAGGAAATCTCTaGCAGACACTTCCTCGGGTT | + |
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Preference number: 4 (lower is better) Translates to: ESLMLSVSTKAGLKLPPSFAGNL*QTLPRV Trigger: AACCCGAGGAAGTGTCTGCCAGAGATTTCCTGCAAA...AGATGGTGGTAGTTTTAGACCGGCTTTTGTAGATACAGAAAGCATCAGAGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS TCA 90 bp | GAAGCGTGTCCCCGGCGCGGACCCGGTGCTCCACATGGCGCTCGATaGCGCCGGCGCCCAGAGGCGCCCGCACGCTGGCCGTGCTGCCGT | + |
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Preference number: 5 (lower is better) Translates to: EACPRRGPGAPHGAR*RRRPEAPARWPCCR Trigger: ACGGCAGCACGGCCAGCGTGCGGGCGCCTCTGGGCGCCGGCGTCATCGAGCGCCATGTGGAGCACCGGGTCCGCGCCGGGGACACGCTTC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS GCA 90 bp | GAGGCGCCCGCACGCTGGCCGTGCTGCCGTACGAGCGGGTCTTGGTaGGGGCCAGGCTCAGCGACAGCTCGGCCTCCTCGGGCTCCGAGG | + |
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Preference number: 5 (lower is better) Translates to: EAPARWPCCRTSGSW*GPGSATARPPRAPR Trigger: CCTCGGAGCCCGAGGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGGCGCCTC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS CCA 90 bp | CCAGAGGCGCCCGCACGCTGGCCGTGCTGCCGTACGAGCGGGTCTTaGTGCGGGCCAGGCTCAGCGACAGCTCGGCCTCCTCGGGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: PEAPARWPCCRTSGS*CGPGSATARPPRAP Trigger: CGGAGCCCGAGGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGGCGCCTCTGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS-3UTR CAA 90 bp | AGCTCGAAGGTGCGCTACGGGAGTCCAGGGGCAGCGCTGCCCCTGAACCAGAGCCCGTACGAGCGGGTCTaGGTGCGGGCCAGGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SSKVRYGSPGAALPLNQSPYERV*VRARLS Trigger: GCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGG...GCTCTGGTTCAGGGGCAGCGCTGCCCCTGGACTCCCGTAGCGCACCTTCGAGCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS TCA 90 bp | CTTTTGATCTGTTCCATCGTGACTCCGTACTTGAGCGCGATGCCCTaGAGCGTGTCCCCGGCGCGGACCCGGTGCTCCACATGGCGCTCG | + |
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Preference number: 5 (lower is better) Translates to: LLICSIVTPYLSAMP*SVSPARTRCSTWRS Trigger: CGAGCGCCATGTGGAGCACCGGGTCCGCGCCGGGGACACGCTTCAGGGCATCGCGCTCAAGTACGGAGTCACGATGGAACAGATCAAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CAA 90 bp | AGTCTTTGCAGGAAATCTCTGGCAGACACTTCCTCGGGTTGCGCAGGCTTGGGGCCGTACGAGCGGGTCTaGGTGCGGGCCAGGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SLCRKSLADTSSGCAGLGPYERV*VRARLS Trigger: GCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGG...CCCCAAGCCTGCGCAACCCGAGGAAGTGTCTGCCAGAGATTTCCTGCAAAGACT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CAA 90 bp | GCGCTACGGGAGTCCAGGGGCAGCGCTGCCCCTGAACCAGAGCCGGCGGGTTCTTCATTGGTAAACAGTTaGTTGGCCCTTTTGATCTGT | + |
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Preference number: 5 (lower is better) Translates to: ALRESRGSAAPEPEPAGSSLVNS*LALLIC Trigger: ACAGATCAAAAGGGCCAACAAACTGTTTACCAATGA...AGAACCCGCCGGCTCTGGTTCAGGGGCAGCGCTGCCCCTGGACTCCCGTAGCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CAA 90 bp | GAACCAGAGCCGGCGGGTTCTTTAGGGTCCAGCCATTCTGTGATCTGGATCAGTAGTTTGTTGGCCCTTTaGATCTGTTCCATCGTGACT | + |
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Preference number: 5 (lower is better) Translates to: EPEPAGSLGSSHSVIWISSLLAL*ICSIVT Trigger: AGTCACGATGGAACAGATCAAAAGGGCCAACAAACT...ACTGATCCAGATCACAGAATGGCTGGACCCTAAAGAACCCGCCGGCTCTGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS-3UTR CAA 90 bp | TTCCTGGCTGCCTGTGTTGAGAGTTTAATCTGTAAGTCCAGTCTTTGCAGGAAATCATTGGTAAACAGTTaGTTGGCCCTTTTGATCTGT | + |
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Preference number: 5 (lower is better) Translates to: FLAACVESLICKSSLCRKSLVNS*LALLIC Trigger: ACAGATCAAAAGGGCCAACAAACTGTTTACCAATGA...TTTCCTGCAAAGACTGGACTTACAGATTAAACTCTCAACACAGGCAGCCAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGTCGACAGTTTCACTTTCCGGAGAATCAATGGAGTTAAGTCCATTAAACAGAAATATACAGTCATaGGTAAACAGTTTGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LLSTVSLSGESMELSPLNRNIQS*VNSLLA Trigger: GGCCAACAAACTGTTTACCAATGACTGTATATTTCT...GTTTAATGGACTTAACTCCATTGATTCTCCGGAAAGTGAAACTGTCGACAGCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS-3UTR CAA 90 bp | GCCGGTCTAAAACTACCACCATCTACAAAAGTGAAAGGCGTTAGAATAAATACAAGAAATATACAGTCATaGGTAAACAGTTTGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: AGLKLPPSTKVKGVRINTRNIQS*VNSLLA Trigger: GGCCAACAAACTGTTTACCAATGACTGTATATTTCT...TGTATTTATTCTAACGCCTTTCACTTTTGTAGATGGTGGTAGTTTTAGACCGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS GCA 72 bp | CGCCGGCGCCCAGAGGCGCCCGCACGCTGGCCGTGCTaGCGTACGAGCGGGTCTTGGTGCGGGCCAGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RRRPEAPARWPC*RTSGSWCGPGS Trigger: TGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGGCGCCTCTGGGCGCCGGCG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS CAA 90 bp | CCCAGAGGCGCCCGCACGCTGGCCGTGCTGCCGTACGAGCGGGTCTaGGTGCGGGCCAGGCTCAGCGACAGCTCGGCCTCCTCGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PRGARTLAVLPYERV*VRARLSDSSASSGS Trigger: GGAGCCCGAGGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGGCGCCTCTGGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS CAA 72 bp | GCCCGCACGCTGGCCGTGCTGCCGTACGAGCGGGTCTaGGTGCGGGCCAGGCTCAGCGACAGCTCGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ARTLAVLPYERV*VRARLSDSSAS Trigger: GGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS GCA 72 bp | GCACGCTGGCCGTGCTGCCGTACGAGCGGGTCTTGGTaGGGGCCAGGCTCAGCGACAGCTCGGCCTCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: ARWPCCRTSGSW*GPGSATARPPR Trigger: CCGAGGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS CCA 72 bp | CCCGCACGCTGGCCGTGCTGCCGTACGAGCGGGTCTTaGTGCGGGCCAGGCTCAGCGACAGCTCGGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PARWPCCRTSGS*CGPGSATARPP Trigger: AGGAGGCCGAGCTGTCGCTGAGCCTGGCCCGCACCAAGACCCGCTCGTACGGCAGCACGGCCAGCGTGCGGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034702.6 ENSMUST00000214961.2 |
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| CDS TCA 72 bp | TGTTCCATCGTGACTCCGTACTTGAGCGCGATGCCCTaGAGCGTGTCCCCGGCGCGGACCCGGTGCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: CSIVTPYLSAMP*SVSPARTRCST Trigger: TGTGGAGCACCGGGTCCGCGCCGGGGACACGCTTCAGGGCATCGCGCTCAAGTACGGAGTCACGATGGAACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS TCA 72 bp | GGCCCTTTTGATCTGTTCCATTTGAGCGCGATGCCCTaGAGCGTGTCCCCGGCGCGGACCCGGTGCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: GPFDLFHLSAMP*SVSPARTRCST Trigger: TGTGGAGCACCGGGTCCGCGCCGGGGACACGCTTCAGGGCATCGCGCTCAAATGGAACAGATCAAAAGGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214961.2 |
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| CDS CCA 72 bp | AAGTCCATTAAACAGCAAAGGCTTCTCCGACAGGATTaGGATGCTCAGCGTCTTCTTCAGAAATATACAGTC | + |
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Preference number: 6 (lower is better) Translates to: KSIKQQRLLRQD*DAQRLLQKYTV Trigger: GACTGTATATTTCTGAAGAAGACGCTGAGCATCCCAATCCTGTCGGAGAAGCCTTTGCTGTTTAATGGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS CAA 72 bp | AATATACAGTCATTGGTAAACAGTTTGTTGGCCCTTTaGATCTGTTCCATCGTGACTCCGTACTTGAGCGCG | + |
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Preference number: 6 (lower is better) Translates to: NIQSLVNSLLAL*ICSIVTPYLSA Trigger: CGCGCTCAAGTACGGAGTCACGATGGAACAGATCAAAAGGGCCAACAAACTGTTTACCAATGACTGTATATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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| CDS CAA 72 bp | GGGATGCTCAGCGTCTTCTTCAGAAATATACAGTCATaGGTAAACAGTTTGTTGGCCCTTTTGATCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GMLSVFFRNIQS*VNSLLALLICS Trigger: GGAACAGATCAAAAGGGCCAACAAACTGTTTACCAATGACTGTATATTTCTGAAGAAGACGCTGAGCATCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034702.6 |
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