Pregenerated sensors for LYSMD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053769Ensembl transcript IDs: ENSMUST00000066386.6
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAGATGGGGAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATaGTCAACGGGACAGCGAGGGCATAGAAGAGCCTTTGAATCTAAA | + |
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Preference number: 1 (lower is better) Translates to: GDGEGSLLPCSKARE*STGQRGHRRAFESK Trigger: TTTAGATTCAAAGGCTCTTCTATGCCCTCGCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCCCATCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR TCA 90 bp | TACCTTGGGAGTGGGGAAAACTCAGCGCAGTCTGCCATTCTATGGTaGGCATCACCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGA | + |
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Preference number: 1 (lower is better) Translates to: YLGSGENSAQSAILW*ASPTPRPQQQASLG Trigger: TCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCAGACTGCGCTGAGTTTTCCCCACTCCCAAGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR GCA 90 bp | AAATTAGGTAAGATCATTGGAGATGGGGAGGGGTCTCTGCTTCCCTaGTCTAAGGCCAGGGAATGCTCAACGGGACAGCGAGGGCATAGA | + |
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Preference number: 1 (lower is better) Translates to: KLGKIIGDGEGSLLP*SKARECSTGQRGHR Trigger: TCTATGCCCTCGCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCCCATCTCCAATGATCTTACCTAATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR GCA 90 bp | CCACTCCTGAACCGGAGACAGACTCCCAGGACTACTGTGCCGCCATaGCTATTTCATCACTTAAGGAACAAAAGACAAATTGTACTGCAG | + |
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Preference number: 1 (lower is better) Translates to: PLLNRRQTPRTTVPP*LFHHLRNKRQIVLQ Trigger: CTGCAGTACAATTTGTCTTTTGTTCCTTAAGTGATGAAATAGGCATGGCGGCACAGTAGTCCTGGGAGTCTGTCTCCGGTTCAGGAGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR GCA 90 bp | CCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTGGGACAGGCGAGCAATGGGGAGGGGTCTCTaGTTCCCTGCTCTAAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: PTPRPQQQASLGKWDRRAMGRGL*FPALRP Trigger: TGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCCCAT...TGCTCGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | TTGGAGATGGGGAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATGCTCAACTCTCCCCCTCGGGCTaGTCCTTCAACATCCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: LEMGRGLCFPALRPGNAQLSPSG*SFNILP Trigger: AGGCAGGATGTTGAAGGACCAGCCCGAGGGGGAGAG...TTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCCCATCTCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR GCA 90 bp | ATCACCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTGGGACAGGCGGGGTCTCTGCTTCCCTaGTCTAAGGCCAGGGAATGC | + |
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Preference number: 2 (lower is better) Translates to: ITNSQASATSFARKVGQAGSLLP*SKAREC Trigger: GCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCC...CGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGGTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR GCA 90 bp | GGGAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATGCTCAACGGGACAGCTTCAACATCCTGCCTTaGTCATCAGTTCTGGGGACA | + |
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Preference number: 2 (lower is better) Translates to: GRGLCFPALRPGNAQRDSFNILP*SSVLGT Trigger: TGTCCCCAGAACTGATGAGCAAGGCAGGATGTTGAA...GCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | CCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTGGGACAGGCGAGCAATTCAGCCCAAGAACTaGGAAGAGGTCTGCTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: PTPRPQQQASLGKWDRRAIQPKN*EEVCSH Trigger: GTGGGAGCAGACCTCTTCCCAGTTCTTGGGCTGAAT...TGCTCGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR GCA 90 bp | GGACAGGCGAGCAGCCAGCCGCCTCCACTTACAGTTCTGGGTTTCCCTATCTTCGGTCCTTCAACATCCTaGCTTGCTCATCAGTTCTGG | + |
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Preference number: 2 (lower is better) Translates to: GQASSQPPPLTVLGFPIFGPSTS*LAHQFW Trigger: CCAGAACTGATGAGCAAGGCAGGATGTTGAAGGACC...GAAGATAGGGAAACCCAGAACTGTAAGTGGAGGCGGCTGGCTGCTCGCCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | AAACTCAGCGCAGTCTGCCATTCTATGGTGAGCATCACCAACTCCCAGGCCTCAAGGAGTGAGGCAGGCTaGGAAGCTCTGTTCTTCAGC | + |
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Preference number: 2 (lower is better) Translates to: KLSAVCHSMVSITNSQASRSEAG*EALFFS Trigger: GCTGAAGAACAGAGCTTCCCAGCCTGCCTCACTCCT...TGAGGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCAGACTGCGCTGAGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | GGACAGGCGAGCAGCCAGCCGCCTCCACTTACAGTTCTGGGTTTCCCTATCTTCCAGCTGAAGAAATCTTaGCAAAGATGGCTGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: GQASSQPPPLTVLGFPIFQLKKS*QRWLER Trigger: CCTCTCCAGCCATCTTTGCCAAGATTTCTTCAGCTG...GAAGATAGGGAAACCCAGAACTGTAAGTGGAGGCGGCTGGCTGCTCGCCTGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | ATTGTACTGCAGATCAGATACAGATTACAGATACATATGAAGTGGGGGCAAGGCGCTTCGCTAGGAAAGTaGGACAGGCGAGCAGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: IVLQIRYRLQIHMKWGQGASLGK*DRRAAS Trigger: GCTGGCTGCTCGCCTGTCCCACTTTCCTAGCGAAGC...GCCTTGCCCCCACTTCATATGTATCTGTAATCTGTATCTGATCTGCAGTACAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | AATTGTACTGCAGATCAGATACAGATTACAGATACATATGAAGTGGGGGCAAGGCTTGGCAAAGATGGCTaGAGAGGAGTGAGGCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: NCTADQIQITDTYEVGARLGKDG*RGVRQA Trigger: AGCCTGCCTCACTCCTCTCCAGCCATCTTTGCCAAG...CCTTGCCCCCACTTCATATGTATCTGTAATCTGTATCTGATCTGCAGTACAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CCA 90 bp | ATTGTACTGCAGATCAGATACAGATTACAGATACATATGAAGTGGGGGCAAGGCTCCCACCCTTTACCTTaGGAGTGGGGAAAACTCAGC | + |
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Preference number: 2 (lower is better) Translates to: IVLQIRYRLQIHMKWGQGSHPLP*EWGKLS Trigger: GCTGAGTTTTCCCCACTCCCAAGGTAAAGGGTGGGA...GCCTTGCCCCCACTTCATATGTATCTGTAATCTGTATCTGATCTGCAGTACAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR TCA 90 bp | TGTGCCGCCATGCCTATTTCATCACTTAAGGAACAAAAGACAAATTGTACTGCAGATTACAGATACATATaGAGTGGGGGCAAGGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: CAAMPISSLKEQKTNCTADYRYI*SGGKAK Trigger: CTTTGCCTTGCCCCCACTTCATATGTATCTGTAATC...TGCAGTACAATTTGTCTTTTGTTCCTTAAGTGATGAAATAGGCATGGCGGCACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR CCA 72 bp | ACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTaGGACAGGCGAGCAGCCAGCCGCCTCCACTTACAG | + |
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Preference number: 3 (lower is better) Translates to: TPRPQQQASLGK*DRRAASRLHLQ Trigger: CTGTAAGTGGAGGCGGCTGGCTGCTCGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR GCA 72 bp | GAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATaGTCAACGGGACAGCGAGGGCATAGAAGAGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: EGSLLPCSKARE*STGQRGHRRAF Trigger: AAAGGCTCTTCTATGCCCTCGCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CAA 90 bp | GGACAGGCGAGCAGCCAGCCGCCTCCACTTACAGTTCTGGGTTTCCCTATCTTCCTTCAACATCCTGCCTaGCTCATCAGTTCTGGGGAC | + |
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Preference number: 3 (lower is better) Translates to: GQASSQPPPLTVLGFPIFLQHPA*LISSGD Trigger: GTCCCCAGAACTGATGAGCAAGGCAGGATGTTGAAG...GAAGATAGGGAAACCCAGAACTGTAAGTGGAGGCGGCTGGCTGCTCGCCTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR GCA 72 bp | CCTTTACCTTGGGAGTGGGGAAAACTCAGCGCAGTCTaGCATTCTATGGTGAGCATCACCAACTCCCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: PLPWEWGKLSAV*HSMVSITNSQA Trigger: GGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCAGACTGCGCTGAGTTTTCCCCACTCCCAAGGTAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR TCA 72 bp | TCCCACTCGCTACGCTTGCCACTAAGTGTCCCCAGCTaGAGAAATCTTGGCAAAGATGGCTGGAGAGGAGTG | + |
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Preference number: 3 (lower is better) Translates to: SHSLRLPLSVPS*RNLGKDGWRGV Trigger: CACTCCTCTCCAGCCATCTTTGCCAAGATTTCTTCAGCTGGGGACACTTAGTGGCAAGCGTAGCGAGTGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR TCA 72 bp | AGTGGGGAAAACTCAGCGCAGTCTGCCATTCTATGGTaGGCATCACCAACTCCCAGGCCTCAGCAACAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: SGENSAQSAILW*ASPTPRPQQQA Trigger: AGCTTGTTGCTGAGGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCAGACTGCGCTGAGTTTTCCCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR CCA 72 bp | GACAGGCGAGCAGCCAGCCGCCTCCACTTACAGTTCTaGGTTTCCCTATCTTCAGTGATATGGAAATTCCCC | + |
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Preference number: 3 (lower is better) Translates to: DRRAASRLHLQF*VSLSSVIWKFP Trigger: GGGGAATTTCCATATCACTGAAGATAGGGAAACCCAGAACTGTAAGTGGAGGCGGCTGGCTGCTCGCCTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| 3UTR-3UTR CAA 90 bp | TGTGCCGCCATGCCTATTTCATCACTTAAGGAACAAAAGACAAATTGTACTGCAGGCATAGAAGAGCCTTaGAATCTAAAGGCTAACTCT | + |
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Preference number: 3 (lower is better) Translates to: CAAMPISSLKEQKTNCTAGIEEP*NLKANS Trigger: AGAGTTAGCCTTTAGATTCAAAGGCTCTTCTATGCC...TGCAGTACAATTTGTCTTTTGTTCCTTAAGTGATGAAATAGGCATGGCGGCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CCA 90 bp | GGGAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATGCTCAACGGGACAGCGAGGCAGAAAGGTCATaGCTGGGGGTGGAGGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GRGLCFPALRPGNAQRDSEAERS*LGVEVS Trigger: GGAAACCTCCACCCCCAGCCATGACCTTTCTGCCTC...GCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR TCA 90 bp | CAGCCTCACCTCAGACTCCTCTCCCCCTCGGGCTGGTCCTTCAACATCCTGCCTTCTCCAGGCTCCAATTaGTGCTCCAGGCGTCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: QPHLRLLSPSGWSFNILPSPGSN*CSRRLS Trigger: GGAAAGACGCCTGGAGCATCAATTGGAGCCTGGAGA...AGGCAGGATGTTGAAGGACCAGCCCGAGGGGGAGAGGAGTCTGAGGTGAGGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR TCA 90 bp | GGGAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATGCTCAACGGGACAGCCACTGGGGAGCAGGATaGTTGTACCAGGCTTCCATA | + |
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Preference number: 4 (lower is better) Translates to: GRGLCFPALRPGNAQRDSHWGAG*LYQASI Trigger: TATGGAAGCCTGGTACAATCATCCTGCTCCCCAGTG...GCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR TCA 90 bp | AAACTCAGCGCAGTCTGCCATTCTATGGTGAGCATCACCAACTCCCAGGCCTCAGTGGAGGTTTCCTGGTaGGGCGGGAGGCCTGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: KLSAVCHSMVSITNSQASVEVSW*GGRPVP Trigger: TGGCACAGGCCTCCCGCCTCACCAGGAAACCTCCAC...TGAGGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCAGACTGCGCTGAGTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR GCA 90 bp | ATCACCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTGGGACAGGCGCCTAGGACTGCTCGCTaGTGCATCCGAGGGGAGCTA | + |
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Preference number: 4 (lower is better) Translates to: ITNSQASATSFARKVGQAPRTAR*CIRGEL Trigger: TAGCTCCCCTCGGATGCAGCAGCGAGCAGTCCTAGG...CGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGGTGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CCA 90 bp | GGGAGGGGTCTCTGCTTCCCTGCTCTAAGGCCAGGGAATGCTCAACGGGACAGCCCTTTCCTCAGCTTCTaGGCAGCAGCCTTCTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GRGLCFPALRPGNAQRDSPFLSF*AAAFFD Trigger: GTCAAAGAAGGCTGCTGCCCAGAAGCTGAGGAAAGG...GCTGTCCCGTTGAGCATTCCCTGGCCTTAGAGCAGGGAAGCAGAGACCCCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR TCA 90 bp | AGCCTCACCTCAGACTCCTCTCCCCCTCGGGCTGGTCCTTCAACATCCTGCCTTTCGTTACCCCGTATTTaGGTGCTAATCCAGCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SLTSDSSPPRAGPSTSCLSLPRI*VLIQPG Trigger: CCCTGGCTGGATTAGCACTCAAATACGGGGTAACGA...AAGGCAGGATGTTGAAGGACCAGCCCGAGGGGGAGAGGAGTCTGAGGTGAGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CCA 90 bp | CCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTGGGACAGGCGAGCACAGAAAGGTCATGGCTaGGGGTGGAGGTTTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PTPRPQQQASLGKWDRRAQKGHG*GWRFPG Trigger: ACCAGGAAACCTCCACCCCCAGCCATGACCTTTCTG...TGCTCGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR TCA 90 bp | AGCCAGCCGCCTCCACTTACAGTTCTGGGTTTCCCTATCTTCAGTGATATGGAAGGGCCGACCCGACCCTaGCCCTCGATTCTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SQPPPLTVLGFPIFSDMEGPTRP*PSILPP Trigger: AGGAGGAAGAATCGAGGGTCAGGGTCGGGTCGGCCC...TTCCATATCACTGAAGATAGGGAAACCCAGAACTGTAAGTGGAGGCGGCTGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR TCA 90 bp | ATTGTACTGCAGATCAGATACAGATTACAGATACATATGAAGTGGGGGCAAGGCTCCGAGACGTCCGGGTaGGTGGCACAGGGCCTAGGA | + |
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Preference number: 4 (lower is better) Translates to: IVLQIRYRLQIHMKWGQGSETSG*VAQGLG Trigger: TCCTAGGCCCTGTGCCACTCACCCGGACGTCTCGGA...GCCTTGCCCCCACTTCATATGTATCTGTAATCTGTATCTGATCTGCAGTACAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CCA 90 bp | TGCCATTCTATGGTGAGCATCACCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAAGATTTCATCTTCCTaGTCCCGCAGTGTCTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: CHSMVSITNSQASATSFAKISSS*SRSVWV Trigger: GACCCAGACACTGCGGGACCAGGAAGATGAAATCTT...AGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR GCA 90 bp | ATTGTACTGCAGATCAGATACAGATTACAGATACATATGAAGTGGGGGCAAGGCAGGACTGCTCGCTGCTaGATCCGAGGGGAGCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: IVLQIRYRLQIHMKWGQGRTARC*IRGELG Trigger: CCCTAGCTCCCCTCGGATGCAGCAGCGAGCAGTCCT...GCCTTGCCCCCACTTCATATGTATCTGTAATCTGTATCTGATCTGCAGTACAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CCA 90 bp | TGCCATTCTATGGTGAGCATCACCAACTCCCAGGCCTCAGCAACAAGCTTCGCTTGGGCTCTGATAGGATaGGGATGTAGAGCGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: CHSMVSITNSQASATSFAWALIG*GCRAFS Trigger: AGAAAACGCTCTACATCCCCATCCTATCAGAGCCCA...AGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGGTGATGCTCACCATAGAATGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS CCA 90 bp | GGCTGGGGGTGGAGGTTTCCTGGTGAGGCGGGAGGCCTGTGCCATTaGGCCGACCCGACCCTGACCCTCGATTCTTCCTCCTCCCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: GWGWRFPGEAGGLCH*ADPTLTLDSSSSPK Trigger: CTTCGGGGAGGAGGAAGAATCGAGGGTCAGGGTCGGGTCGGCCCAATGGCACAGGCCTCCCGCCTCACCAGGAAACCTCCACCCCCAGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS GCA 90 bp | GGTCATGGCTGGGGGTGGAGGTTTCCTGGTGAGGCGGGAGGCCTGTaGCATTGGGCCGACCCGACCCTGACCCTCGATTCTTCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: GHGWGWRFPGEAGGL*HWADPTLTLDSSSS Trigger: GGAGGAGGAAGAATCGAGGGTCAGGGTCGGGTCGGCCCAATGGCACAGGCCTCCCGCCTCACCAGGAAACCTCCACCCCCAGCCATGACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS TCA 90 bp | TTTCATCTTCCTGGTCCCGCAGTGTCTGGGTCCGAGACGTCCGGGTaGGTGGCACAGGGCCTAGGACTGCTCGCTGCTGCATCCGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: FHLPGPAVSGSETSG*VAQGLGLLAAASEG Trigger: CCCCTCGGATGCAGCAGCGAGCAGTCCTAGGCCCTGTGCCACTCACCCGGACGTCTCGGACCCAGACACTGCGGGACCAGGAAGATGAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CAA 90 bp | CCAACTCCCAGGCCTCAGCAACAAGCTTCGCTAGGAAAGTGGGACAGGCGAGCAGGGAGGCCTGTGCCATaGGGCCGACCCGACCCTGAC | + |
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Preference number: 5 (lower is better) Translates to: PTPRPQQQASLGKWDRRAGRPVP*GRPDPD Trigger: GTCAGGGTCGGGTCGGCCCAATGGCACAGGCCTCCC...TGCTCGCCTGTCCCACTTTCCTAGCGAAGCTTGTTGCTGAGGCCTGGGAGTTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS TCA 90 bp | CTCCAATTGATGCTCCAGGCGTCTTTCCCTCACTGGGGAGCAGGATaGTTGTACCAGGCTTCCATAAGAACGAGCACGGCTCCCATGCAG | + |
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Preference number: 5 (lower is better) Translates to: LQLMLQASFPHWGAG*LYQASIRTSTAPMQ Trigger: CTGCATGGGAGCCGTGCTCGTTCTTATGGAAGCCTGGTACAATCATCCTGCTCCCCAGTGAGGGAAAGACGCCTGGAGCATCAATTGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS TCA 90 bp | CCGTATTTGAGTGCTAATCCAGCCAGGGTGTCTCCAGGCTCCAATTaGTGCTCCAGGCGTCTTTCCCTCACTGGGGAGCAGGATGATTGT | + |
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Preference number: 5 (lower is better) Translates to: PYLSANPARVSPGSN*CSRRLSLTGEQDDC Trigger: ACAATCATCCTGCTCCCCAGTGAGGGAAAGACGCCTGGAGCATCAATTGGAGCCTGGAGACACCCTGGCTGGATTAGCACTCAAATACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS-3UTR CAA 90 bp | ATTGTACTGCAGATCAGATACAGATTACAGATACATATGAAGTGGGGGCAAGGCGTCTCCAGGCTCCAATaGATGCTCCAGGCGTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: IVLQIRYRLQIHMKWGQGVSRLQ*MLQASF Trigger: GAAAGACGCCTGGAGCATCAATTGGAGCCTGGAGAC...GCCTTGCCCCCACTTCATATGTATCTGTAATCTGTATCTGATCTGCAGTACAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS TCA 72 bp | CCTGGTCCCGCAGTGTCTGGGTCCGAGACGTCCGGGTaGGTGGCACAGGGCCTAGGACTGCTCGCTGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: PGPAVSGSETSG*VAQGLGLLAAA Trigger: TGCAGCAGCGAGCAGTCCTAGGCCCTGTGCCACTCACCCGGACGTCTCGGACCCAGACACTGCGGGACCAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS TCA 72 bp | GCAGAAAGGTCATGGCTGGGGGTGGAGGTTTCCTGGTaGGGCGGGAGGCCTGTGCCATTGGGCCGACCCGAC | + |
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Preference number: 6 (lower is better) Translates to: AERSWLGVEVSW*GGRPVPLGRPD Trigger: GTCGGGTCGGCCCAATGGCACAGGCCTCCCGCCTCACCAGGAAACCTCCACCCCCAGCCATGACCTTTCTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS CCA 72 bp | TGGAGGTTTCCTGGTGAGGCGGGAGGCCTGTGCCATTaGGCCGACCCGACCCTGACCCTCGATTCTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: WRFPGEAGGLCH*ADPTLTLDSSS Trigger: GGAGGAAGAATCGAGGGTCAGGGTCGGGTCGGCCCAATGGCACAGGCCTCCCGCCTCACCAGGAAACCTCCA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS CCA 72 bp | AGTTTGAAGATTTCATCTTCCTGGTCCCGCAGTGTCTaGGTCCGAGACGTCCGGGTGAGTGGCACAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SLKISSSWSRSV*VRDVRVSGTGP Trigger: AGGCCCTGTGCCACTCACCCGGACGTCTCGGACCCAGACACTGCGGGACCAGGAAGATGAAATCTTCAAACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS TCA 72 bp | ATGCTCCAGGCGTCTTTCCCTCACTGGGGAGCAGGATaGTTGTACCAGGCTTCCATAAGAACGAGCACGGCT | + |
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Preference number: 6 (lower is better) Translates to: MLQASFPHWGAG*LYQASIRTSTA Trigger: AGCCGTGCTCGTTCTTATGGAAGCCTGGTACAATCATCCTGCTCCCCAGTGAGGGAAAGACGCCTGGAGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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| CDS CAA 72 bp | TTTGTACGCTTAATCTGTTCCATCGTTACCCCGTATTaGAGTGCTAATCCAGCCAGGGTGTCTCCAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FVRLICSIVTPY*SANPARVSPGS Trigger: GGAGCCTGGAGACACCCTGGCTGGATTAGCACTCAAATACGGGGTAACGATGGAACAGATTAAGCGTACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066386.6 |
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