Pregenerated sensors for LYRM7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020268Ensembl transcript IDs: ENSMUST00000141703.2, ENSMUST00000144164.9, ENSMUST00000148070.8
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTGGAAGACCAAAAGACCTACCAAAGGGAAAGAGAGGAGCGTCCTaGCTCCCCAGGCCTTCAGTTGCCCATGTCAGTGAAAGGCATGTC | + |
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Preference number: 1 (lower is better) Translates to: FGRPKDLPKGKRGAS*LPRPSVAHVSERHV Trigger: GACATGCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGTAGGTCTTTTGGTCTTCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR CCA 90 bp | GTAAATGCAGTGCCCTTAGAGGCCAGTAGAGTGCACAGGATCCCCTaGAAATGGAGTGACAGCTTCGAGTTACCTGAAAGGGTGCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: VNAVPLEASRVHRIP*KWSDSFELPERVLG Trigger: TCCCAGCACCCTTTCAGGTAACTCGAAGCTGTCACTCCATTTCCAGGGGATCCTGTGCACTCTACTGGCCTCTAAGGGCACTGCATTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR GCA 90 bp | GGTTTTATAGGCTTCTTGGTTTCAAAGGGAAAGAGAGGAGCGTCCTaGCTCCCCAGGCCTTCAGTTGCCCATGTCAGTGAAAGGCATGTC | + |
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Preference number: 1 (lower is better) Translates to: GFIGFLVSKGKRGAS*LPRPSVAHVSERHV Trigger: GACATGCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGAAACCAAGAAGCCTATAAAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR GCA 90 bp | TATTACCATTACTGTGGCAACACTAGTGCCTCCCTTGGCAGTGTGTaGATCAAAGGCGCAGCACCTCGCCTTTGTGACATTGCAGCAGCT | + |
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Preference number: 1 (lower is better) Translates to: YYHYCGNTSASLGSV*IKGAAPRLCDIAAA Trigger: AGCTGCTGCAATGTCACAAAGGCGAGGTGCTGCGCCTTTGATGCACACACTGCCAAGGGAGGCACTAGTGTTGCCACAGTAATGGTAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR CCA 90 bp | ATGCATCTCCTGCTTTCTGTGTCTCTTGCTCACAGTAGGGCCATGTaGGGCTGTGCGACATCACCTATAGTCGTGGAAGTACTCACTTCA | + |
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Preference number: 1 (lower is better) Translates to: MHLLLSVSLAHSRAM*GCATSPIVVEVLTS Trigger: TGAAGTGAGTACTTCCACGACTATAGGTGATGTCGCACAGCCCCACATGGCCCTACTGTGAGCAAGAGACACAGAAAGCAGGAGATGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR CCA 90 bp | ATGTTTTTAAATGTGTGGTGGCATACACCTTTGGTCCCAGCACTCTaGAGGCAGAGGCTGGCAATCCCTGTGAGTTTGAGGTCAGCCTTG | + |
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Preference number: 1 (lower is better) Translates to: MFLNVWWHTPLVPAL*RQRLAIPVSLRSAL Trigger: CAAGGCTGACCTCAAACTCACAGGGATTGCCAGCCTCTGCCTCCAGAGTGCTGGGACCAAAGGTGTATGCCACCACACATTTAAAAACAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR TCA 90 bp | TTTACTGCTTCTGGGTTGGCGCATCACAGTACGGCACATTTTCTGTaGGAAGATCTTTCCTGGGGACCAGTTGCAGTGTGTCATGGTCTG | + |
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Preference number: 1 (lower is better) Translates to: FTASGLAHHSTAHFL*EDLSWGPVAVCHGL Trigger: CAGACCATGACACACTGCAACTGGTCCCCAGGAAAGATCTTCTCACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR CCA 90 bp | TGGGAAGGAGCAGAGATGGGTTTATCCTGGAAGCTTTACTGCTTCTaGGTTGGCGCATCACAGTACGGCACATTTTCTGTGAGAAGATCT | + |
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Preference number: 1 (lower is better) Translates to: WEGAEMGLSWKLYCF*VGASQYGTFSVRRS Trigger: AGATCTTCTCACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAAAGCTTCCAGGATAAACCCATCTCTGCTCCTTCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR TCA 90 bp | ACCTTTATGGGGTCTCTGTGGGCACCAGGCATGCAAGTAGTAAGCTaGCACACAAAGCAGCAAGGCACCAATAAACAGGAAATCACTTCT | + |
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Preference number: 1 (lower is better) Translates to: TFMGSLWAPGMQVVS*HTKQQGTNKQEITS Trigger: AGAAGTGATTTCCTGTTTATTGGTGCCTTGCTGCTTTGTGTGTCAGCTTACTACTTGCATGCCTGGTGCCCACAGAGACCCCATAAAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR GCA 90 bp | TTAAAGTGGGAAGGAGCAGAGATGGGTTTATCCTGGAAGCTTTACTaGTTCTGGGTTGGCGCATCACAGTACGGCACATTTTCTGTGAGA | + |
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Preference number: 1 (lower is better) Translates to: LKWEGAEMGLSWKLY*FWVGASQYGTFSVR Trigger: TCTCACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAAAGCTTCCAGGATAAACCCATCTCTGCTCCTTCCCACTTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR CCA 90 bp | GTGCTTTTGCCAAGACCCTTAGTGACATTTCTGGCACCCACATGTTaGCTGACAACCATCTGTAATACAACAGAGATGCAAGTGGCACAC | + |
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Preference number: 1 (lower is better) Translates to: VLLPRPLVTFLAPTC*LTTICNTTEMQVAH Trigger: GTGTGCCACTTGCATCTCTGTTGTATTACAGATGGTTGTCAGCCAACATGTGGGTGCCAGAAATGTCACTAAGGGTCTTGGCAAAAGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR CCA 90 bp | AGGAGCAGAGATGGGTTTATCCTGGAAGCTTTACTGCTTCTGGGTTaGCGCATCACAGTACGGCACATTTTCTGTGAGAAGATCTTTCCT | + |
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Preference number: 1 (lower is better) Translates to: RSRDGFILEALLLLG*RITVRHIFCEKIFP Trigger: AGGAAAGATCTTCTCACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAAAGCTTCCAGGATAAACCCATCTCTGCTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR GCA 90 bp | CTGATTGGCACAAGTAGGTCACTAGAAACAGTCATTTTAACATTATaGCTGCCCACCCACTCCCTGCCAGGCTTAGTTAGCCAAGTGTTT | + |
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Preference number: 1 (lower is better) Translates to: LIGTSRSLETVILTL*LPTHSLPGLVSQVF Trigger: AAACACTTGGCTAACTAAGCCTGGCAGGGAGTGGGTGGGCAGGCATAATGTTAAAATGACTGTTTCTAGTGACCTACTTGTGCCAATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR TCA 90 bp | GCAGTCTACAAAGACCACAAGCCATCTGACAGAGGGCCACTACAGTaGCCCAGAGTGACTTTGATATTTCATCTATCTAATGTCTTTACA | + |
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Preference number: 1 (lower is better) Translates to: AVYKDHKPSDRGPLQ*PRVTLIFHLSNVFT Trigger: TGTAAAGACATTAGATAGATGAAATATCAAAGTCACTCTGGGTCACTGTAGTGGCCCTCTGTCAGATGGCTTGTGGTCTTTGTAGACTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR TCA 90 bp | CCCTCTTACTCCAGGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTaGATGCTTGGCTTCATTCTTTATAACTTCAGTACACATCTCTAC | + |
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Preference number: 1 (lower is better) Translates to: PSYSRGDLKRLCGKC*MLGFILYNFSTHLY Trigger: GTAGAGATGTGTACTGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCCTGGAGTAAGAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR GCA 90 bp | CTTACTCCAGGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTGAATaGTTGGCTTCATTCTTTATAACTTCAGTACACATCTCTACACTC | + |
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Preference number: 1 (lower is better) Translates to: LTPGVTLKDCVVSAE*LASFFITSVHISTL Trigger: GAGTGTAGAGATGTGTACTGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCCTGGAGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR CCA 90 bp | TTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTaGTTTGAGTCTATACATGTAAATGCAGTGCCCTTAGAGGCCAGT | + |
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Preference number: 1 (lower is better) Translates to: LLVLRFLYYASVCHC*FESIHVNAVPLEAS Trigger: ACTGGCCTCTAAGGGCACTGCATTTACATGTATAGACTCAAACCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR TCA 90 bp | CAAAGCAGCAAGGCACCAATAAACAGGAAATCACTTCTCTGTAGTTaGGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCA | + |
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Preference number: 1 (lower is better) Translates to: QSSKAPINRKSLLCS*VACFTIPLLCICVS Trigger: TGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAACTACAGAGAAGTGATTTCCTGTTTATTGGTGCCTTGCTGCTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR-3UTR GCA 90 bp | CCAATTCCCTCTCCTGACCTCTGCAGGCACGGCACTGCATACACACCTGGTGCAAAGAGAGGAGCGTCCTaGCTCCCCAGGCCTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: PIPSPDLCRHGTAYTPGAKRGAS*LPRPSV Trigger: AACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTT...TGCACCAGGTGTGTATGCAGTGCCGTGCCTGCAGAGGTCAGGAGAGGGAATTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | CCAATTCCCTCTCCTGACCTCTGCAGGCACGGCACTGCATACACACCTGGTGCAAGACCACAAGCCATCTaGCAGAGGGCCACTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: PIPSPDLCRHGTAYTPGARPQAI*QRATTV Trigger: CACTGTAGTGGCCCTCTGTCAGATGGCTTGTGGTCT...TGCACCAGGTGTGTATGCAGTGCCGTGCCTGCAGAGGTCAGGAGAGGGAATTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR CAA 90 bp | TACCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTaGCCCATGTCAGTGAAAGGCATGTCTATCTCCTCTGTAGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: YQREREERPASPGLQ*PMSVKGMSISSVAL Trigger: GAGGGCTACAGAGGAGATAGACATGCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR CCA 90 bp | ACCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTTGCCCATGTGATGGCTCAGTGCTTTaGAGCACTGGCTGTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: TKGKERSVLPPQAFSCPCDGSVL*STGCSS Trigger: AGAAGAACAGCCAGTGCTCCAAAGCACTGAGCCATC...ACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR CAA 90 bp | TTTCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTaGCCCATGTCAGTGAAAGGCATGTCTATCTCCTCTGTAGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: FQREREERPASPGLQ*PMSVKGMSISSVAL Trigger: GAGGGCTACAGAGGAGATAGACATGCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR-3UTR GCA 90 bp | AAGACCTACCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTTGTCAGAGAGAAACATGTaGATGTCCAGGACCGTTGCC | + |
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Preference number: 2 (lower is better) Translates to: KTYQREREERPASPGLQLSERNM*MSRTVA Trigger: GGCAACGGTCCTGGACATGCACATGTTTCTCTCTGA...CAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGTAGGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR CCA 90 bp | AGGCATGTCTATCTCCTCTGTAGCCCTCAGCCTGTCGCTCATTTGCAACGTGCGATGGGGCTAGAGAGATaGCTCAGTGCTTTGGAGCAC | + |
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Preference number: 2 (lower is better) Translates to: RHVYLLCSPQPVAHLQRAMGLER*LSALEH Trigger: GTGCTCCAAAGCACTGAGCCATCTCTCTAGCCCCAT...CGCACGTTGCAAATGAGCGACAGGCTGAGGGCTACAGAGGAGATAGACATGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR CCA 90 bp | ACCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTTGCCCATGTGACTTTGGGAAACAATaGCTGCTTTTAGACGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: TKGKERSVLPPQAFSCPCDFGKQ*LLLDES Trigger: GCTCTCGTCTAAAAGCAGCCATTGTTTCCCAAAGTC...ACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | CCTGGAAATGGAGTGACAGCTTCGAGTTACCTGAAAGGGTGCTGGGAACTGAACAGAGGGCCACTACAGTaGCCCAGAGTGACTTTGATA | + |
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Preference number: 2 (lower is better) Translates to: PGNGVTASSYLKGCWELNRGPLQ*PRVTLI Trigger: TATCAAAGTCACTCTGGGTCACTGTAGTGGCCCTCT...GTTCAGTTCCCAGCACCCTTTCAGGTAACTCGAAGCTGTCACTCCATTTCCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | TCCCCAGGCCTTCAGTTGCCCATGTCAGTGAAAGGCATGTCTATCTCCTCTGTACTGACACTGGACTCATaGTTCTCCAGCTTCACTTCC | + |
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Preference number: 2 (lower is better) Translates to: SPGLQLPMSVKGMSISSVLTLDS*FSSFTS Trigger: GGAAGTGAAGCTGGAGAATCATGAGTCCAGTGTCAG...TACAGAGGAGATAGACATGCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGGCATGTCTATCTCCTCTGTAGCCCTCAGCCTGTCGCTCATTTGCAACGTGTCAGAGAGAAACATGTaGATGTCCAGGACCGTTGCC | + |
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Preference number: 2 (lower is better) Translates to: KGMSISSVALSLSLICNVSERNM*MSRTVA Trigger: GGCAACGGTCCTGGACATGCACATGTTTCTCTCTGA...CACGTTGCAAATGAGCGACAGGCTGAGGGCTACAGAGGAGATAGACATGCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| 3UTR-3UTR TCA 90 bp | CACCAATTTGGTAAGGTGCTTCATTGGCAAACAGCTTTGGAAGACCAAAAGACCAGACCACAAGCCATCTaGCAGAGGGCCACTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: HQFGKVLHWQTALEDQKTRPQAI*QRATTV Trigger: CACTGTAGTGGCCCTCTGTCAGATGGCTTGTGGTCT...GGTCTTTTGGTCTTCCAAAGCTGTTTGCCAATGAAGCACCTTACCAAATTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | TGGATCTTAGAGTTCAAGGCTAGGACTGCACAGGGAGACCCTATCTCAAAAGAGGTGTGTATCCCAGGCTaGCACTGGACTCATGATTCT | + |
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Preference number: 2 (lower is better) Translates to: WILEFKARTAQGDPISKEVCIPG*HWTHDS Trigger: AGAATCATGAGTCCAGTGTCAGCCTGGGATACACAC...CTCTTTTGAGATAGGGTCTCCCTGTGCAGTCCTAGCCTTGAACTCTAAGATCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR CAA 90 bp | GGACTTTTCTGTTATATGTTTTTAAATGTGTGGTGGCATACACCTTaGGTCCCAGCACTCTGGAGGCAGAGGCTGGCAATCCCTGTGAGT | + |
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Preference number: 2 (lower is better) Translates to: GLFCYMFLNVWWHTP*VPALWRQRLAIPVS Trigger: ACTCACAGGGATTGCCAGCCTCTGCCTCCAGAGTGCTGGGACCAAAGGTGTATGCCACCACACATTTAAAAACATATAACAGAAAAGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR-3UTR TCA 90 bp | ATCCCTCTTACTCCAGGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTGAATGCAGTTGCCCATGTCAGTaGAAGGCATGTCTATCTCCT | + |
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Preference number: 2 (lower is better) Translates to: IPLTPGVTLKDCVVSAECSCPCQ*KACLSP Trigger: AGGAGATAGACATGCCTTTCACTGACATGGGCAACT...GCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCCTGGAGTAAGAGGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGAGTTCTTAACCTCTGAGCCATCTCAGCCCCTGCTTGCTTTCGAATATTTGCGCTCATTTGCAACGTaGGCTTCAGAGAGAAACATG | + |
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Preference number: 2 (lower is better) Translates to: QEFLTSEPSQPLLAFEYLRSFAT*ASERNM Trigger: CATGTTTCTCTCTGAAGCGCACGTTGCAAATGAGCG...CAAATATTCGAAAGCAAGCAGGGGCTGAGATGGCTCAGAGGTTAAGAACTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR GCA 90 bp | ATCCCTCTTACTCCAGGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTGAATGCCGCTCATTTGCAACGTaGGCTTCAGAGAGAAACATG | + |
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Preference number: 2 (lower is better) Translates to: IPLTPGVTLKDCVVSAECRSFAT*ASERNM Trigger: CATGTTTCTCTCTGAAGCGCACGTTGCAAATGAGCG...GCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCCTGGAGTAAGAGGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR-3UTR GCA 90 bp | GTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTGGCCCTCTCCTGACCTCTaGAGGCACGGCACTGCATAC | + |
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Preference number: 2 (lower is better) Translates to: VELLVLRFLYYASVCHCWPSPDL*RHGTAY Trigger: GTATGCAGTGCCGTGCCTGCAGAGGTCAGGAGAGGG...CCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR GCA 90 bp | CAGGAGTTCTTAACCTCTGAGCCATCTCAGCCCCTGCTTGCTTTCGAATATTTGAGTTACCTGAAAGGGTaGTGGGAACTGAACTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: QEFLTSEPSQPLLAFEYLSYLKG*WELNSG Trigger: ACCTGAGTTCAGTTCCCAGCACCCTTTCAGGTAACT...CAAATATTCGAAAGCAAGCAGGGGCTGAGATGGCTCAGAGGTTAAGAACTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR CCA 90 bp | GACAACCTTTATGGGGTCTCTGTGGGCACCAGGCATGCAAGTAGTAAGCTGACAATTGGCAAACAGCTTTaGAAGACCAAAAGACCTACC | + |
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Preference number: 2 (lower is better) Translates to: DNLYGVSVGTRHASSKLTIGKQL*KTKRPT Trigger: GGTAGGTCTTTTGGTCTTCCAAAGCTGTTTGCCAAT...TGTCAGCTTACTACTTGCATGCCTGGTGCCCACAGAGACCCCATAAAGGTTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | GTAGTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTCCAATTCCCTCTCCTaGCCTCTGCAGGCACGGCAC | + |
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Preference number: 2 (lower is better) Translates to: VVELLVLRFLYYASVCHCSNSLS*PLQARH Trigger: GTGCCGTGCCTGCAGAGGTCAGGAGAGGGAATTGGA...ACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAACTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | ATCTATAGCATTTCACAGCAGTCTACAAAGACCACAAGCCATCTGACAGAGGGCACGGCACATTTTCTGTaGGAAGATCTTTCCTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: IYSISQQSTKTTSHLTEGTAHFL*EDLSWG Trigger: TCCCCAGGAAAGATCTTCTCACAGAAAATGTGCCGT...GCCCTCTGTCAGATGGCTTGTGGTCTTTGTAGACTGCTGTGAAATGCTATAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR-3UTR GCA 90 bp | GACAACCTTTATGGGGTCTCTGTGGGCACCAGGCATGCAAGTAGTAAGCTGACAACGATTCCTTTATTATaGATCTGTGTGTCACTGTTG | + |
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Preference number: 2 (lower is better) Translates to: DNLYGVSVGTRHASSKLTTIPLL*ICVSLL Trigger: CAACAGTGACACACAGATGCATAATAAAGGAATCGT...TGTCAGCTTACTACTTGCATGCCTGGTGCCCACAGAGACCCCATAAAGGTTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR-3UTR CCA 90 bp | AAAAGTCACCAATTTGGTAAGGTGCTTCATTGGCAAACAGCTTTGGAAGACCAAATGGGGCTAGAGAGATaGCTCAGTGCTTTGGAGCAC | + |
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Preference number: 2 (lower is better) Translates to: KSHQFGKVLHWQTALEDQMGLER*LSALEH Trigger: GTGCTCCAAAGCACTGAGCCATCTCTCTAGCCCCAT...TTGGTCTTCCAAAGCTGTTTGCCAATGAAGCACCTTACCAAATTGGTGACTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGTTCTTAACCTCTGAGCCATCTCAGCCCCTGCTTGCTTTCGAATATTTGGTATGTCCCATGAGATaGAAAGTCACCAATTTGGTA | + |
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Preference number: 2 (lower is better) Translates to: QEFLTSEPSQPLLAFEYLVCPMR*KVTNLV Trigger: TACCAAATTGGTGACTTTTCATCTCATGGGACATAC...CAAATATTCGAAAGCAAGCAGGGGCTGAGATGGCTCAGAGGTTAAGAACTCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR CAA 90 bp | ACTCCAGGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTGAATGCTaGGCTTCATTCTTTATAACTTCAGTACACATCTCTACACTCTGC | + |
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Preference number: 2 (lower is better) Translates to: TPGVTLKDCVVSAEC*ASFFITSVHISTLC Trigger: GCAGAGTGTAGAGATGTGTACTGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCCTGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR-3UTR CCA 90 bp | GTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTGGTACCTGAAAGGGTGCTaGGAACTGAACTCAGGTCCT | + |
|
Preference number: 2 (lower is better) Translates to: VELLVLRFLYYASVCHCWYLKGC*ELNSGP Trigger: AGGACCTGAGTTCAGTTCCCAGCACCCTTTCAGGTA...CCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR-3UTR CCA 90 bp | TCATATCCTTGCCAATACTTGATATTGTCAACCATCCAGATTTCGGCCATTCTATGTAGCCAGGTATGGTaGTGCACGCCTTTAATCCCA | + |
|
Preference number: 2 (lower is better) Translates to: SYPCQYLILSTIQISAILCSQVW*CTPLIP Trigger: TGGGATTAAAGGCGTGCACCACCATACCTGGCTACA...TAGAATGGCCGAAATCTGGATGGTTGACAATATCAAGTATTGGCAAGGATATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR-3UTR TCA 90 bp | GTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTGGAGTTGCCCATGTCAGTaGAAGGCATGTCTATCTCCT | + |
|
Preference number: 2 (lower is better) Translates to: VELLVLRFLYYASVCHCWSCPCQ*KACLSP Trigger: AGGAGATAGACATGCCTTTCACTGACATGGGCAACT...CCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR-3UTR TCA 90 bp | TCATATCCTTGCCAATACTTGATATTGTCAACCATCCAGATTTCGGCCATTCTAGACTGGAGAGATGGCTaGGTGGTTAAGAAACACTGT | + |
|
Preference number: 2 (lower is better) Translates to: SYPCQYLILSTIQISAILDWRDG*VVKKHC Trigger: ACAGTGTTTCTTAACCACTCAGCCATCTCTCCAGTC...TAGAATGGCCGAAATCTGGATGGTTGACAATATCAAGTATTGGCAAGGATATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR-3UTR CCA 90 bp | GTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTGGAATTATGTAAAGCACTaGGGAGGCAGAGGCAAGTGG | + |
|
Preference number: 2 (lower is better) Translates to: VELLVLRFLYYASVCHCWNYVKH*GGRGKW Trigger: CCACTTGCCTCTGCCTCCCCAGTGCTTTACATAATT...CCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR-3UTR CCA 90 bp | CAGAGAAATACACTACATAATTATTTGTTAGCCGCAAAAATAACCACGGGACTTGTGCACAGGATCCCCTaGAAATGGAGTGACAGCTTC | + |
|
Preference number: 2 (lower is better) Translates to: QRNTLHNYLLAAKITTGLVHRIP*KWSDSF Trigger: GAAGCTGTCACTCCATTTCCAGGGGATCCTGTGCAC...AAGTCCCGTGGTTATTTTTGCGGCTAACAAATAATTATGTAGTGTATTTCTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR CAA 90 bp | AACGTTGTCTTTGTAAGAATGCAGAGAAATACACTACATAATTATTaGTTAGCCGCAAAAATAACCACGGGACTTTGGGAAACAATGGCT | + |
|
Preference number: 2 (lower is better) Translates to: NVVFVRMQRNTLHNY*LAAKITTGLWETMA Trigger: AGCCATTGTTTCCCAAAGTCCCGTGGTTATTTTTGCGGCTAACAAATAATTATGTAGTGTATTTCTCTGCATTCTTACAAAGACAACGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | CAGTGTGTGCATCAAAGGCGCAGCACCTCGCCTTTGTaGCATTGCAGCAGCTCAGGTTCTGAGTGCGGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: QCVHQRRSTSPL*HCSSSGSECGA Trigger: AGCACCGCACTCAGAACCTGAGCTGCTGCAATGTCACAAAGGCGAGGTGCTGCGCCTTTGATGCACACACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR TCA 72 bp | CACCTCGCCTTTGTGACATTGCAGCAGCTCAGGTTCTaGGTGCGGTGCTTAATGGCCCATCTCACCCAGCTT | + |
|
Preference number: 3 (lower is better) Translates to: HLAFVTLQQLRF*VRCLMAHLTQL Trigger: AAGCTGGGTGAGATGGGCCATTAAGCACCGCACTCAGAACCTGAGCTGCTGCAATGTCACAAAGGCGAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR GCA 72 bp | CCAAAAGACCTACCAAAGGGAAAGAGAGGAGCGTCCTaGCTCCCCAGGCCTTCAGTTGCCCATGTCAGTGAA | + |
|
Preference number: 3 (lower is better) Translates to: PKDLPKGKRGAS*LPRPSVAHVSE Trigger: TTCACTGACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGTAGGTCTTTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | ATCCCAGCACTCAGGAGACAGAGGCAGGCGGATTTCTaGGTTCGAGACCAGCCTGGTGTACAAAGTGAGTTC | + |
|
Preference number: 3 (lower is better) Translates to: IPALRRQRQADF*VRDQPGVQSEF Trigger: GAACTCACTTTGTACACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCTGAGTGCTGGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR GCA 72 bp | TACTGTGGCAACACTAGTGCCTCCCTTGGCAGTGTGTaGATCAAAGGCGCAGCACCTCGCCTTTGTGACATT | + |
|
Preference number: 3 (lower is better) Translates to: YCGNTSASLGSV*IKGAAPRLCDI Trigger: AATGTCACAAAGGCGAGGTGCTGCGCCTTTGATGCACACACTGCCAAGGGAGGCACTAGTGTTGCCACAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR CCA 72 bp | TTAGAGGCCAGTAGAGTGCACAGGATCCCCTGGAAATaGAGTGACAGCTTCGAGTTACCTGAAAGGGTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LEASRVHRIPWK*SDSFELPERVL Trigger: CAGCACCCTTTCAGGTAACTCGAAGCTGTCACTCCATTTCCAGGGGATCCTGTGCACTCTACTGGCCTCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR CCA 72 bp | CTGCTTTCTGTGTCTCTTGCTCACAGTAGGGCCATGTaGGGCTGTGCGACATCACCTATAGTCGTGGAAGTA | + |
|
Preference number: 3 (lower is better) Translates to: LLSVSLAHSRAM*GCATSPIVVEV Trigger: TACTTCCACGACTATAGGTGATGTCGCACAGCCCCACATGGCCCTACTGTGAGCAAGAGACACAGAAAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR-3UTR CAA 90 bp | ACCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTTGCCCATGTGTCTGTGTGAATTCCTaGAATAACAGCTGTTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: TKGKERSVLPPQAFSCPCVCVNS*NNSCSE Trigger: CTCAGAACAGCTGTTATTCAAGGAATTCACACAGAC...ACATGGGCAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR-3UTR CAA 90 bp | ATCTATAGCATTTCACAGCAGTCTACAAAGACCACAAGCCATCTGACAGAGGGCTCCCCAGGCCTTCAGTaGCCCATGTCAGTGAAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: IYSISQQSTKTTSHLTEGSPGLQ*PMSVKG Trigger: GCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGA...GCCCTCTGTCAGATGGCTTGTGGTCTTTGTAGACTGCTGTGAAATGCTATAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR-3UTR CAA 90 bp | GGCAGAGGCAAGTGGATCTTAGAGTTCAAGGCTAGGACTGCACAGGGAGACCCTCATTGGCAAACAGCTTaGGAAGACCAAAAGACCTAC | + |
|
Preference number: 3 (lower is better) Translates to: GRGKWILEFKARTAQGDPHWQTA*EDQKTY Trigger: GTAGGTCTTTTGGTCTTCCAAAGCTGTTTGCCAATG...AGGGTCTCCCTGTGCAGTCCTAGCCTTGAACTCTAAGATCCACTTGCCTCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | TCTGGGTTGGCGCATCACAGTACGGCACATTTTCTGTaGGAAGATCTTTCCTGGGGACCAGTTGCAGTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: SGLAHHSTAHFL*EDLSWGPVAVC Trigger: ACACACTGCAACTGGTCCCCAGGAAAGATCTTCTCACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR GCA 72 bp | TCTATCTCCTCTGTAGCCCTCAGCCTGTCGCTCATTTaGAACGTGCGCTTCAGAGAGAAACATGTGCATGTC | + |
|
Preference number: 3 (lower is better) Translates to: SISSVALSLSLI*NVRFREKHVHV Trigger: GACATGCACATGTTTCTCTCTGAAGCGCACGTTGCAAATGAGCGACAGGCTGAGGGCTACAGAGGAGATAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
||
| 3UTR GCA 72 bp | GGGAAGCAATACAGCGCAGTTCCAGCTCTGGTACCATaGATCTCCTGCTTTCTGTGTCTCTTGCTCACAGTA | + |
|
Preference number: 3 (lower is better) Translates to: GKQYSAVPALVP*ISCFLCLLLTV Trigger: TACTGTGAGCAAGAGACACAGAAAGCAGGAGATGCATGGTACCAGAGCTGGAACTGCGCTGTATTGCTTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR CCA 72 bp | AATGGAGTGACAGCTTCGAGTTACCTGAAAGGGTGCTaGGAACTGAACTCAGGTCCTAGCAGCAGGAGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: NGVTASSYLKGC*ELNSGPSSRSS Trigger: AGAACTCCTGCTGCTAGGACCTGAGTTCAGTTCCCAGCACCCTTTCAGGTAACTCGAAGCTGTCACTCCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR CCA 72 bp | ATCGTGAAGGGAAGCAATACAGCGCAGTTCCAGCTCTaGTACCATGCATCTCCTGCTTTCTGTGTCTCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: IVKGSNTAQFQL*YHASPAFCVSC Trigger: GCAAGAGACACAGAAAGCAGGAGATGCATGGTACCAGAGCTGGAACTGCGCTGTATTGCTTCCCTTCACGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCCATGTCAGTGAAAGGCATGTCTATCTCCTCTGTAGCCCTCAGCCTGTCGCTCTTCCAGTGAAACAGTaGGTTTTCTTCATTGTGGTC | + |
|
Preference number: 3 (lower is better) Translates to: AHVSERHVYLLCSPQPVALPVKQ*VFFIVV Trigger: GACCACAATGAAGAAAACCAACTGTTTCACTGGAAG...AGCGACAGGCTGAGGGCTACAGAGGAGATAGACATGCCTTTCACTGACATGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR-3UTR CAA 90 bp | AAGATCTTTCCTGGGGACCAGTTGCAGTGTGTCATGGTCTGTGTGAATTCCTTGGCAATCCCTGTGAGTTaGAGGTCAGCCTTGTCCACA | + |
|
Preference number: 3 (lower is better) Translates to: KIFPGDQLQCVMVCVNSLAIPVS*RSALST Trigger: TGTGGACAAGGCTGACCTCAAACTCACAGGGATTGC...CAAGGAATTCACACAGACCATGACACACTGCAACTGGTCCCCAGGAAAGATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR CCA 72 bp | GCAGAGATGGGTTTATCCTGGAAGCTTTACTGCTTCTaGGTTGGCGCATCACAGTACGGCACATTTTCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: AEMGLSWKLYCF*VGASQYGTFSV Trigger: CACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAAAGCTTCCAGGATAAACCCATCTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR CCA 72 bp | TCAAATTATGTAAAGCACTGGGGAGGCAGAGGCAAGTaGATCTTAGAGTTCAAGGCTAGGACTGCACAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: SNYVKHWGGRGK*ILEFKARTAQG Trigger: TCCCTGTGCAGTCCTAGCCTTGAACTCTAAGATCCACTTGCCTCTGCCTCCCCAGTGCTTTACATAATTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR CCA 72 bp | GATGGGTTTATCCTGGAAGCTTTACTGCTTCTGGGTTaGCGCATCACAGTACGGCACATTTTCTGTGAGAAG | + |
|
Preference number: 3 (lower is better) Translates to: DGFILEALLLLG*RITVRHIFCEK Trigger: CTTCTCACAGAAAATGTGCCGTACTGTGATGCGCCAACCCAGAAGCAGTAAAGCTTCCAGGATAAACCCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR CCA 72 bp | GCATGTCCAGGACCGTTGCCAGGTATGTATTTAAAGTaGGAAGGAGCAGAGATGGGTTTATCCTGGAAGCTT | + |
|
Preference number: 3 (lower is better) Translates to: ACPGPLPGMYLK*EGAEMGLSWKL Trigger: AAGCTTCCAGGATAAACCCATCTCTGCTCCTTCCCACTTTAAATACATACCTGGCAACGGTCCTGGACATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR-3UTR CAA 90 bp | AAGATCTTTCCTGGGGACCAGTTGCAGTGTGTCATGGTCTGTGTGAATTCCTTGAAGGCTGCACTGGTCTaGAAAACCACAGTTCTACAG | + |
|
Preference number: 3 (lower is better) Translates to: KIFPGDQLQCVMVCVNSLKAALV*KTTVLQ Trigger: CTGTAGAACTGTGGTTTTCAAGACCAGTGCAGCCTT...CAAGGAATTCACACAGACCATGACACACTGCAACTGGTCCCCAGGAAAGATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR GCA 72 bp | CGCTCATTTGCAACGTGCGCTTCAGAGAGAAACATGTaGATGTCCAGGACCGTTGCCAGGTATGTATTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: RSFATCASERNM*MSRTVARYVFK Trigger: TTTAAATACATACCTGGCAACGGTCCTGGACATGCACATGTTTCTCTCTGAAGCGCACGTTGCAAATGAGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
||
| 3UTR GCA 72 bp | ACAAGTAGGTCACTAGAAACAGTCATTTTAACATTATaGCTGCCCACCCACTCCCTGCCAGGCTTAGTTAGC | + |
|
Preference number: 3 (lower is better) Translates to: TSRSLETVILTL*LPTHSLPGLVS Trigger: GCTAACTAAGCCTGGCAGGGAGTGGGTGGGCAGGCATAATGTTAAAATGACTGTTTCTAGTGACCTACTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR CCA 72 bp | TATTTAAAGTGGGAAGGAGCAGAGATGGGTTTATCCTaGAAGCTTTACTGCTTCTGGGTTGGCGCATCACAG | + |
|
Preference number: 3 (lower is better) Translates to: YLKWEGAEMGLS*KLYCFWVGASQ Trigger: CTGTGATGCGCCAACCCAGAAGCAGTAAAGCTTCCAGGATAAACCCATCTCTGCTCCTTCCCACTTTAAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
||
| 3UTR TCA 72 bp | ATCTCTGTAAGTTTGAGGTCACCCTGGTCTGCAGAGTaGGGTTCAGGACAGAAAAAGCTACACAAAGAAACC | + |
|
Preference number: 3 (lower is better) Translates to: ISVSLRSPWSAE*GSGQKKLHKET Trigger: GGTTTCTTTGTGTAGCTTTTTCTGTCCTGAACCTCACTCTGCAGACCAGGGTGACCTCAAACTTACAGAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR CCA 72 bp | CCAAGACCCTTAGTGACATTTCTGGCACCCACATGTTaGCTGACAACCATCTGTAATACAACAGAGATGCAA | + |
|
Preference number: 3 (lower is better) Translates to: PRPLVTFLAPTC*LTTICNTTEMQ Trigger: TTGCATCTCTGTTGTATTACAGATGGTTGTCAGCCAACATGTGGGTGCCAGAAATGTCACTAAGGGTCTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR-3UTR CAA 90 bp | TTAAAAGACTGTGTGGTAAGTGCTGAATGCTTGGCTTCATTCTTTATAACTTCATCCCCAGGCCTTCAGTaGCCCATGTCAGTGAAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: LKDCVVSAECLASFFITSSPGLQ*PMSVKG Trigger: GCCTTTCACTGACATGGGCAACTGAAGGCCTGGGGA...TGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR TCA 72 bp | AAAGACCACAAGCCATCTGACAGAGGGCCACTACAGTaGCCCAGAGTGACTTTGATATTTCATCTATCTAAT | + |
|
Preference number: 3 (lower is better) Translates to: KDHKPSDRGPLQ*PRVTLIFHLSN Trigger: ATTAGATAGATGAAATATCAAAGTCACTCTGGGTCACTGTAGTGGCCCTCTGTCAGATGGCTTGTGGTCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | TATATAATGTGTTCCAGACTAGCCAAGGCTACACAGTaGGACCCTGTCTCAGAAAAGTCATATCCTTGCCAA | + |
|
Preference number: 3 (lower is better) Translates to: YIMCSRLAKATQ*DPVSEKSYPCQ Trigger: TTGGCAAGGATATGACTTTTCTGAGACAGGGTCTCACTGTGTAGCCTTGGCTAGTCTGGAACACATTATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | TCTACACTCTGCAAAGACCAGCCTCTAGTCTTCCAGTaGAACAGTTGGTTTTCTTCATTGTGGTCTTCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: STLCKDQPLVFQ*NSWFSSLWSSV Trigger: AACAGAAGACCACAATGAAGAAAACCAACTGTTTCACTGGAAGACTAGAGGCTGGTCTTTGCAGAGTGTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR-3UTR CAA 90 bp | GTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTGGACTTTTAAAGTTGGGTaGAGGGACTGGAGAGATGGC | + |
|
Preference number: 3 (lower is better) Translates to: VELLVLRFLYYASVCHCWTFKVG*RDWRDG Trigger: GCCATCTCTCCAGTCCCTCAACCCAACTTTAAAAGT...CCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | TCCAGGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTaGATGCTTGGCTTCATTCTTTATAACTTCAGTACA | + |
|
Preference number: 3 (lower is better) Translates to: SRGDLKRLCGKC*MLGFILYNFST Trigger: TGTACTGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR GCA 72 bp | GGGGTGACCTTAAAAGACTGTGTGGTAAGTGCTGAATaGTTGGCTTCATTCTTTATAACTTCAGTACACATC | + |
|
Preference number: 3 (lower is better) Translates to: GVTLKDCVVSAE*LASFFITSVHI Trigger: GATGTGTACTGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAAGGTCACCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR CCA 72 bp | GAGATGAAAAGTCACCAATTTGGTAAGGTGCTTCATTaGCAAACAGCTTTGGAAGACCAAAAGACCTACCAA | + |
|
Preference number: 3 (lower is better) Translates to: EMKSHQFGKVLH*QTALEDQKTYQ Trigger: TTGGTAGGTCTTTTGGTCTTCCAAAGCTGTTTGCCAATGAAGCACCTTACCAAATTGGTGACTTTTCATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | GAAGCATCTGTTCAAATATTACTTTTAAAGTTGGGTTaGGGGACTGGAGAGATGGCTGAGTGGTTAAGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: EASVQILLLKLG*GTGEMAEWLRN Trigger: GTTTCTTAACCACTCAGCCATCTCTCCAGTCCCTCAACCCAACTTTAAAAGTAATATTTGAACAGATGCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR CCA 72 bp | TTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTaGTTTGAGTCTATACATGTAAATGCAGTGCCCTTA | + |
|
Preference number: 3 (lower is better) Translates to: LRFLYYASVCHC*FESIHVNAVPL Trigger: TAAGGGCACTGCATTTACATGTATAGACTCAAACCAACAGTGACACACAGATGCATAATAAAGGAATCGTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
||
| 3UTR TCA 72 bp | AAGGCACCAATAAACAGGAAATCACTTCTCTGTAGTTaGGTTGCTTGTTTTACGATTCCTTTATTATGCATC | + |
|
Preference number: 3 (lower is better) Translates to: KAPINRKSLLCS*VACFTIPLLCI Trigger: GATGCATAATAAAGGAATCGTAAAACAAGCAACTCAACTACAGAGAAGTGATTTCCTGTTTATTGGTGCCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
||
| 3UTR CAA 72 bp | GCTCTGGTACCATGCATCTCCTGCTTTCTGTGTCTCTaGCTCACAGTAGGGCCATGTGGGGCTGTGCGACAT | + |
|
Preference number: 4 (lower is better) Translates to: ALVPCISCFLCL*LTVGPCGAVRH Trigger: ATGTCGCACAGCCCCACATGGCCCTACTGTGAGCAAGAGACACAGAAAGCAGGAGATGCATGGTACCAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| CDS-3UTR TCA 90 bp | CTCCTGCTTTCTGTGTCTCTTGCTCACAGTAGGGCCATGTGGGGCTGTGCGACAACGGCACATTTTCTGTaGGAAGATCTTTCCTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LLLSVSLAHSRAMWGCATTAHFL*EDLSWG Trigger: TCCCCAGGAAAGATCTTCTCACAGAAAATGTGCCGT...TGTCGCACAGCCCCACATGGCCCTACTGTGAGCAAGAGACACAGAAAGCAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR CAA 72 bp | TTTATTACCATTACTGTGGCAACACTAGTGCCTCCCTaGGCAGTGTGTGCATCAAAGGCGCAGCACCTCGCC | + |
|
Preference number: 4 (lower is better) Translates to: FITITVATLVPP*AVCASKAQHLA Trigger: GGCGAGGTGCTGCGCCTTTGATGCACACACTGCCAAGGGAGGCACTAGTGTTGCCACAGTAATGGTAATAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
||
| 3UTR CAA 72 bp | GTCTATCTCCTCTGTAGCCCTCAGCCTGTCGCTCATTaGCAACGTGCGCTTCAGAGAGAAACATGTGCATGT | + |
|
Preference number: 4 (lower is better) Translates to: VYLLCSPQPVAH*QRALQRETCAC Trigger: ACATGCACATGTTTCTCTCTGAAGCGCACGTTGCAAATGAGCGACAGGCTGAGGGCTACAGAGGAGATAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| CDS-3UTR CCA 90 bp | AAGACCTACCAAAGGGAAAGAGAGGAGCGTCCTGCCTCCCCAGGCCTTCAGTTGCATTTATCTTTACTCTaGCTGCTTCCAATGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: KTYQREREERPASPGLQLHLSLL*LLPMLS Trigger: AGAGAGCATTGGAAGCAGCCAGAGTAAAGATAAATG...CAACTGAAGGCCTGGGGAGGCAGGACGCTCCTCTCTTTCCCTTTGGTAGGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR CAA 72 bp | GCGCTTCAGAGAGAAACATGTGCATGTCCAGGACCGTaGCCAGGTATGTATTTAAAGTGGGAAGGAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: ALQRETCACPGP*PGMYLKWEGAE Trigger: CTCTGCTCCTTCCCACTTTAAATACATACCTGGCAACGGTCCTGGACATGCACATGTTTCTCTCTGAAGCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| CDS-3UTR CCA 90 bp | TTGCCCATGTCAGTGAAAGGCATGTCTATCTCCTCTGTAGCCCTCAGCCTGTCGCATTTATCTTTACTCTaGCTGCTTCCAATGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: LPMSVKGMSISSVALSLSHLSLL*LLPMLS Trigger: AGAGAGCATTGGAAGCAGCCAGAGTAAAGATAAATG...CGACAGGCTGAGGGCTACAGAGGAGATAGACATGCCTTTCACTGACATGGGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| CDS-3UTR GCA 90 bp | ATGTGCATGTCCAGGACCGTTGCCAGGTATGTATTTAAAGTGGGAAGGAGCAGATGCTGTCTGGTCCTGTaGAGTGTTTTAAAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: MCMSRTVARYVFKVGRSRCCLVL*SVLKSC Trigger: ACAGCTCTTTAAAACACTGCACAGGACCAGACAGCA...TCTGCTCCTTCCCACTTTAAATACATACCTGGCAACGGTCCTGGACATGCACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| 3UTR CAA 72 bp | TGTTATATGTTTTTAAATGTGTGGTGGCATACACCTTaGGTCCCAGCACTCTGGAGGCAGAGGCTGGCAATC | + |
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Preference number: 4 (lower is better) Translates to: CYMFLNVWWHTP*VPALWRQRLAI Trigger: GATTGCCAGCCTCTGCCTCCAGAGTGCTGGGACCAAAGGTGTATGCCACCACACATTTAAAAACATATAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141703.2 |
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| 3UTR CAA 72 bp | AGTGAAACAGTTGGTTTTCTTCATTGTGGTCTTCTGTaGAGGGACATAGTTCAGACACCTCTAGTAGGCATC | + |
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Preference number: 4 (lower is better) Translates to: SETVGFLHCGLL*RDIVQTPLVGI Trigger: GATGCCTACTAGAGGTGTCTGAACTATGTCCCTCAACAGAAGACCACAATGAAGAAAACCAACTGTTTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| CDS-3UTR GCA 90 bp | ATCTATAGCATTTCACAGCAGTCTACAAAGACCACAAGCCATCTGACAGAGGGCTCATTTTTAAAAACTTaGTGTCTGGTCCTGTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: IYSISQQSTKTTSHLTEGSFLKT*CLVLCS Trigger: ACTGCACAGGACCAGACAGCAAGTTTTTAAAAATGA...GCCCTCTGTCAGATGGCTTGTGGTCTTTGTAGACTGCTGTGAAATGCTATAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| CDS-3UTR CCA 90 bp | TTCAGTACACATCTCTACACTCTGCAAAGACCAGCCTCTAGTCTTCCAGTGAAACATTTATCTTTACTCTaGCTGCTTCCAATGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: FSTHLYTLQRPASSLPVKHLSLL*LLPMLS Trigger: AGAGAGCATTGGAAGCAGCCAGAGTAAAGATAAATG...TTTCACTGGAAGACTAGAGGCTGGTCTTTGCAGAGTGTAGAGATGTGTACTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| 3UTR CAA 72 bp | GACCCTGTCTCAGAAAAGTCATATCCTTGCCAATACTaGATATTGTCAACCATCCAGATTTCGGCCATTCTA | + |
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Preference number: 4 (lower is better) Translates to: DPVSEKSYPCQY*ILSTIQISAIL Trigger: TAGAATGGCCGAAATCTGGATGGTTGACAATATCAAGTATTGGCAAGGATATGACTTTTCTGAGACAGGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| CDS-3UTR GCA 90 bp | GTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTGGTGCTGTCTGGTCCTGTaGAGTGTTTTAAAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: VELLVLRFLYYASVCHCWCCLVL*SVLKSC Trigger: ACAGCTCTTTAAAACACTGCACAGGACCAGACAGCA...CCAACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| CDS-3UTR TCA 90 bp | CAGAGAAATACACTACATAATTATTTGTTAGCCGCAAAAATAACCACGGGACTTACGGCACATTTTCTGTaGGAAGATCTTTCCTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QRNTLHNYLLAAKITTGLTAHFL*EDLSWG Trigger: TCCCCAGGAAAGATCTTCTCACAGAAAATGTGCCGT...AAGTCCCGTGGTTATTTTTGCGGCTAACAAATAATTATGTAGTGTATTTCTCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| CDS-3UTR GCA 90 bp | CAGAGAAATACACTACATAATTATTTGTTAGCCGCAAAAATAACCACGGGACTTTGCTGTCTGGTCCTGTaGAGTGTTTTAAAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QRNTLHNYLLAAKITTGLCCLVL*SVLKSC Trigger: ACAGCTCTTTAAAACACTGCACAGGACCAGACAGCA...AAGTCCCGTGGTTATTTTTGCGGCTAACAAATAATTATGTAGTGTATTTCTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| 3UTR CAA 72 bp | GTCTCAGAAAAGTCATATCCTTGCCAATACTTGATATaGTCAACCATCCAGATTTCGGCCATTCTAATAGAC | + |
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Preference number: 4 (lower is better) Translates to: VSEKSYPCQYLI*STIQISAILID Trigger: GTCTATTAGAATGGCCGAAATCTGGATGGTTGACAATATCAAGTATTGGCAAGGATATGACTTTTCTGAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| 3UTR CAA 72 bp | GTGACCTTAAAAGACTGTGTGGTAAGTGCTGAATGCTaGGCTTCATTCTTTATAACTTCAGTACACATCTCT | + |
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Preference number: 4 (lower is better) Translates to: VTLKDCVVSAEC*ASFFITSVHIS Trigger: AGAGATGTGTACTGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAAGGTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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| CDS-3UTR GCA 90 bp | GTAGTTGAGTTGCTTGTTTTACGATTCCTTTATTATGCATCTGTGTGTCACTGTTCATTTTTAAAAACTTaGTGTCTGGTCCTGTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: VVELLVLRFLYYASVCHCSFLKT*CLVLCS Trigger: ACTGCACAGGACCAGACAGCAAGTTTTTAAAAATGA...ACAGTGACACACAGATGCATAATAAAGGAATCGTAAAACAAGCAACTCAACTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000144164.9 |
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| CDS-3UTR CAA 90 bp | AGGCATGTCTATCTCCTCTGTAGCCCTCAGCCTGTCGCTCATTTGCAACGTGCGATCATTTTTAAAAACTaGCTGTCTGGTCCTGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: RHVYLLCSPQPVAHLQRAIIFKN*LSGPVQ Trigger: CTGCACAGGACCAGACAGCAAGTTTTTAAAAATGAT...CGCACGTTGCAAATGAGCGACAGGCTGAGGGCTACAGAGGAGATAGACATGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| CDS-3UTR CAA 90 bp | TTGCCCATGTCAGTGAAAGGCATGTCTATCTCCTCTGTAGCCCTCAGCCTGTCGGTCTGTGTGAATTCCTaGAATAACAGCTGTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LPMSVKGMSISSVALSLSVCVNS*NNSCSE Trigger: CTCAGAACAGCTGTTATTCAAGGAATTCACACAGAC...CGACAGGCTGAGGGCTACAGAGGAGATAGACATGCCTTTCACTGACATGGGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| CDS-3UTR CAA 90 bp | CTTTACATGGGGCTAGAGAGATGGCTCAGTGCTTTGGAGCACTGGCTGTTCTTCATCATTTTTAAAAACTaGCTGTCTGGTCCTGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LYMGLERWLSALEHWLFFIIFKN*LSGPVQ Trigger: CTGCACAGGACCAGACAGCAAGTTTTTAAAAATGAT...GAAGAACAGCCAGTGCTCCAAAGCACTGAGCCATCTCTCTAGCCCCATGTAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 |
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| CDS-3UTR CAA 90 bp | TGTGCATGTCCAGGACCGTTGCCAGGTATGTATTTAAAGTGGGAAGGAGCAGAGATCATTTTTAAAAACTaGCTGTCTGGTCCTGTGCAG | + |
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Preference number: 5 (lower is better) Translates to: CACPGPLPGMYLKWEGAEIIFKN*LSGPVQ Trigger: CTGCACAGGACCAGACAGCAAGTTTTTAAAAATGAT...CTCTGCTCCTTCCCACTTTAAATACATACCTGGCAACGGTCCTGGACATGCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000141703.2 ENSMUST00000144164.9 ENSMUST00000148070.8 |
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| CDS-3UTR CAA 90 bp | TTAAAAGACTGTGTGGTAAGTGCTGAATGCTTGGCTTCATTCTTTATAACTTCAGTCTGTGTGAATTCCTaGAATAACAGCTGTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LKDCVVSAECLASFFITSVCVNS*NNSCSE Trigger: CTCAGAACAGCTGTTATTCAAGGAATTCACACAGAC...TGAAGTTATAAAGAATGAAGCCAAGCATTCAGCACTTACCACACAGTCTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148070.8 |
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