RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LYRM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046573

Ensembl transcript IDs: ENSMUST00000053265.8

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCACACCTGGTACTGCAGCAGCCTTCAGAGGGCATCAGATGCCTaGAAGTTGGACTACAGATGGTTGGGAGCCCCTGGAATACTGGGA +
Preference number: 1 (lower is better)
Translates to: VHTWYCSSLQRASDA*KLDYRWLGAPGILG
Trigger: TCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCAGGTGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 90 bp AGCAGCCTTCAGAGGGCATCAGATGCCTGGAAGTTGGACTACAGATaGTTGGGAGCCCCTGGAATACTGGGAAATCAAACCTGGGTCCTC +
Preference number: 1 (lower is better)
Translates to: SSLQRASDAWKLDYR*LGAPGILGNQTWVL
Trigger: GAGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 90 bp CCTGGTACTGCAGCAGCCTTCAGAGGGCATCAGATGCCTGGAAGTTaGACTACAGATGGTTGGGAGCCCCTGGAATACTGGGAAATCAAA +
Preference number: 1 (lower is better)
Translates to: PGTAAAFRGHQMPGS*TTDGWEPLEYWEIK
Trigger: TTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 90 bp GTTTTGCTAGCACGTATGTATGTGCACCATGTGCACACCTGGTACTaGAGCAGCCTTCAGAGGGCATCAGATGCCTGGAAGTTGGACTAC +
Preference number: 1 (lower is better)
Translates to: VLLARMYVHHVHTWY*SSLQRASDAWKLDY
Trigger: GTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCAGGTGTGCACATGGTGCACATACATACGTGCTAGCAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 90 bp GCAGTGGCTATTTCACCCAGTACTGGGAGGTTCCACCATATAGAATaGATGCTGGAGGTGGTCAGTTCTGCTGTGGAGGCTGTTTCCTTG +
Preference number: 1 (lower is better)
Translates to: AVAISPSTGRFHHIE*MLEVVSSAVEAVSL
Trigger: CAAGGAAACAGCCTCCACAGCAGAACTGACCACCTCCAGCATCCATTCTATATGGTGGAACCTCCCAGTACTGGGTGAAATAGCCACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 90 bp ACTCCTCATCTTGATCCATGTCCTCATTACCTGTGTCTGAACTGGTaGTTACTCTTGCAATCTTCAGTTGTTGGTGGGGTGGGGCCCTCC +
Preference number: 1 (lower is better)
Translates to: TPHLDPCPHYLCLNW*LLLQSSVVGGVGPS
Trigger: GGAGGGCCCCACCCCACCAACAACTGAAGATTGCAAGAGTAAGCACCAGTTCAGACACAGGTAATGAGGACATGGATCAAGATGAGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 90 bp AGTGCATGGCTTTCCTTGGGGATTGCCAGAACTGAGATTCCAGTGTaGATGGGATGTGGAGGGACTTGGGAATCTGCATTTGTAGGTTTG +
Preference number: 1 (lower is better)
Translates to: SAWLSLGIARTEIPV*MGCGGTWESAFVGL
Trigger: CAAACCTACAAATGCAGATTCCCAAGTCCCTCCACATCCCATGCACACTGGAATCTCAGTTCTGGCAATCCCCAAGGAAAGCCATGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 90 bp AGTCATAAGACATTCCCAGTGCCCCTGGTGTCTCAGGATTACATATaGCACACTTCAGTGCATGGCTTTCCTTGGGGATTGCCAGAACTG +
Preference number: 1 (lower is better)
Translates to: SHKTFPVPLVSQDYI*HTSVHGFPWGLPEL
Trigger: CAGTTCTGGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATATGTAATCCTGAGACACCAGGGGCACTGGGAATGTCTTATGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 90 bp ATGCCTGGAAGTTGGACTACAGATGGTTGGGAGCCCCTGGAATACTaGGAAATCAAACCTGGGTCCTCTACAAGAGCGAAACATACTTTT +
Preference number: 1 (lower is better)
Translates to: MPGSWTTDGWEPLEY*EIKPGSSTRAKHTF
Trigger: AAAAGTATGTTTCGCTCTTGTAGAGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 90 bp GGCATCTTTAACACCTGGGAAAAGCTCAAAGGTCGCAGTCAGAGCTaGATGACTGATCACCAGAGTCACCTGGAGAGCCATATTTTATCT +
Preference number: 1 (lower is better)
Translates to: GIFNTWEKLKGRSQS*MTDHQSHLESHILS
Trigger: AGATAAAATATGGCTCTCCAGGTGACTCTGGTGATCAGTCATTCAGCTCTGACTGCGACCTTTGAGCTTTTCCCAGGTGTTAAAGATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 90 bp AATGAGGATACACAGCCATTTCTTCACATAACAGCTGTGACAGAATaGAAATGGGACTCAGTTTATCAGCGCCTACAAGGCAGGCAGAGC +
Preference number: 1 (lower is better)
Translates to: NEDTQPFLHITAVTE*KWDSVYQRLQGRQS
Trigger: GCTCTGCCTGCCTTGTAGGCGCTGATAAACTGAGTCCCATTTGCATTCTGTCACAGCTGTTATGTGAAGAAATGGCTGTGTATCCTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 90 bp GAGACAGGTCCCTGGAACCTCCCAGAAGTTAAGGAAGATGTTATGTaGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTTATACAACA +
Preference number: 1 (lower is better)
Translates to: ETGPWNLPEVKEDVM*HVPCVCGRNGFYTT
Trigger: TGTTGTATAAAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAACTTCTGGGAGGTTCCAGGGACCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 90 bp GACAGACTGCGTGGACATAATTCACATGAATGCCACAGGAATTCATaGCACATTGCCTTAGCCACTGTAGTACCCACACTACTTACATGC +
Preference number: 1 (lower is better)
Translates to: DRLRGHNSHECHRNS*HIALATVVPTLLTC
Trigger: GCATGTAAGTAGTGTGGGTACTACAGTGGCTAAGGCAATGTGTCATGAATTCCTGTGGCATTCATGTGAATTATGTCCACGCAGTCTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 90 bp GTCCCTGGAACCTCCCAGAAGTTAAGGAAGATGTTATGTGGCATGTaGCGTGTGTGTGTGGAAGGAATGGATTTTATACAACATATGGCA +
Preference number: 1 (lower is better)
Translates to: VPGTSQKLRKMLCGM*RVCVEGMDFIQHMA
Trigger: TGCCATATGTTGTATAAAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAACTTCTGGGAGGTTCCAGGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 90 bp TTAGCCACTGTAGTACCCACACTACTTACATGCATGGTCCAGCTTTaGTGTGAATCCAGTCTACTTAGCATCAAGAAGAAATTCTTCCTG +
Preference number: 1 (lower is better)
Translates to: LATVVPTLLTCMVQL*CESSLLSIKKKFFL
Trigger: CAGGAAGAATTTCTTCTTGATGCTAAGTAGACTGGATTCACATCAAAGCTGGACCATGCATGTAAGTAGTGTGGGTACTACAGTGGCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp GGACTACAGATGGTTGGGAGCCCCTGGAATACTGGGAAATCAAACCTGGGTCCTGCAATCTTCAGTTGTTaGTGGGGTGGGGCCCTCCTT +
Preference number: 2 (lower is better)
Translates to: GLQMVGSPWNTGKSNLGPAIFSC*WGGALL
Trigger: AAGGAGGGCCCCACCCCACCAACAACTGAAGATTGC...AGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 90 bp AGCCTTCAGAGGGCATCAGATGCCTGGAAGTTGGACTACAGATGGTaGGGAGCCCCTGGAATACTGGGAAATCAAACCTGGGTCCTCTAC +
Preference number: 2 (lower is better)
Translates to: SLQRASDAWKLDYRW*GAPGILGNQTWVLY
Trigger: GTAGAGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 90 bp ACCTGGTACTGCAGCAGCCTTCAGAGGGCATCAGATGCCTGGAAGTaGGACTACAGATGGTTGGGAGCCCCTGGAATACTGGGAAATCAA +
Preference number: 2 (lower is better)
Translates to: TWYCSSLQRASDAWK*DYRWLGAPGILGNQ
Trigger: TTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR TCA 90 bp TGCAGCAGCCTTCAGAGGGCATCAGATGCCTGGAAGTTGGACTACAGATGGTTGGTGGGGCCCTCCTTTTaGGTTCCCACTTCTACCATT +
Preference number: 2 (lower is better)
Translates to: CSSLQRASDAWKLDYRWLVGPSF*VPTSTI
Trigger: AATGGTAGAAGTGGGAACTCAAAAGGAGGGCCCCAC...CAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR TCA 90 bp GCCTTCAGAGGGCATCAGATGCCTGGAAGTTGGACTACAGATGGTTGGGAGCCCTTAGACTCCTCATCTTaGTCCATGTCCTCATTACCT +
Preference number: 2 (lower is better)
Translates to: AFRGHQMPGSWTTDGWEPLDSSS*SMSSLP
Trigger: AGGTAATGAGGACATGGATCAAGATGAGGAGTCTAA...GGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp CAAATGGGACTCAGTTTATCAGCGCCTACAAGGCAGGCAGAGCAGTGGCTATTTAATGGATGCTGGAGGTaGTCAGTTCTGCTGTGGAGG +
Preference number: 2 (lower is better)
Translates to: QMGLSLSAPTRQAEQWLFNGCWR*SVLLWR
Trigger: CCTCCACAGCAGAACTGACCACCTCCAGCATCCATT...AAATAGCCACTGCTCTGCCTGCCTTGTAGGCGCTGATAAACTGAGTCCCATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp ATGGTTGGGAGCCCCTGGAATACTGGGAAATCAAACCTGGGTCCTCTACAAGAGCATTCCCAGTGCCCCTaGTGTCTCAGGATTACATAT +
Preference number: 2 (lower is better)
Translates to: MVGSPWNTGKSNLGPLQEHSQCP*CLRITY
Trigger: ATATGTAATCCTGAGACACCAGGGGCACTGGGAATG...CTCTTGTAGAGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp CAGGTAACGTGCAGTCATAAGACATTCCCAGTGCCCCTGGTGTCTCAGGATTACTATGACACACTTCAGTaGATGGCTTTCCTTGGGGAT +
Preference number: 2 (lower is better)
Translates to: QVTCSHKTFPVPLVSQDYYDTLQ*MAFLGD
Trigger: ATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATA...GTAATCCTGAGACACCAGGGGCACTGGGAATGTCTTATGACTGCACGTTACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GGGACTCTGAACGCAGGCCTGTGTGGCTTTACTTTACTGTGCATGGACTCAGCTACAGCTGTGACAGAATaGAAATGGGACTCAGTTTAT +
Preference number: 2 (lower is better)
Translates to: GTLNAGLCGFTLLCMDSATAVTE*KWDSVY
Trigger: ATAAACTGAGTCCCATTTGCATTCTGTCACAGCTGT...AGCTGAGTCCATGCACAGTAAAGTAAAGCCACACAGGCCTGCGTTCAGAGTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GGACTACAGATGGTTGGGAGCCCCTGGAATACTGGGAAATCAAACCTGGGTCCTCCAAGACACAGAGTCTaGAAAAGCTCTATACAAATG +
Preference number: 2 (lower is better)
Translates to: GLQMVGSPWNTGKSNLGPPRHRV*KSSIQM
Trigger: CATTTGTATAGAGCTTTTGCAGACTCTGTGTCTTGG...AGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp TTAGCATCAAGAAGAAATTCTTCCTGTGAGACAGGTCCCTGGAACCTCCCAGAAACTGAGATTCCAGTGTaGATGGGATGTGGAGGGACT +
Preference number: 2 (lower is better)
Translates to: LASRRNSSCETGPWNLPETEIPV*MGCGGT
Trigger: AGTCCCTCCACATCCCATGCACACTGGAATCTCAGT...TTCTGGGAGGTTCCAGGGACCTGTCTCACAGGAAGAATTTCTTCTTGATGCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GAAGTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATCAGAGGGCATCAGATaGCTGGAAGTTGGACTACAG +
Preference number: 2 (lower is better)
Translates to: EVKEDVMWHVPCVCGRNGSEGIR*LEVGLQ
Trigger: CTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGA...TCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAACTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp AGGATTACATATGACACACTTCAGTGCATGGCTTTCCTTGGGGATTGCCAGAACTGGTCAGTTCTGCTGTaGAGGCTGTTTCCTTGTGCT +
Preference number: 2 (lower is better)
Translates to: RITYDTLQCMAFLGDCQNWSVLL*RLFPCA
Trigger: AGCACAAGGAAACAGCCTCCACAGCAGAACTGACCA...GTTCTGGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATATGTAATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp TTAGCATCAAGAAGAAATTCTTCCTGTGAGACAGGTCCCTGGAACCTCCCAGAAACACACTTCAGTGCATaGCTTTCCTTGGGGATTGCC +
Preference number: 2 (lower is better)
Translates to: LASRRNSSCETGPWNLPETHFSA*LSLGIA
Trigger: GGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGT...TTCTGGGAGGTTCCAGGGACCTGTCTCACAGGAAGAATTTCTTCTTGATGCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp GGGACTCTGAACGCAGGCCTGTGTGGCTTTACTTTACTGTGCATGGACTCAGCTATCACCAGAGTCACCTaGAGAGCCATATTTTATCTA +
Preference number: 2 (lower is better)
Translates to: GTLNAGLCGFTLLCMDSAITRVT*RAIFYL
Trigger: TAGATAAAATATGGCTCTCCAGGTGACTCTGGTGAT...AGCTGAGTCCATGCACAGTAAAGTAAAGCCACACAGGCCTGCGTTCAGAGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp AGGATTACATATGACACACTTCAGTGCATGGCTTTCCTTGGGGATTGCCAGAACGGATGTGGAGGGACTTaGGAATCTGCATTTGTAGGT +
Preference number: 2 (lower is better)
Translates to: RITYDTLQCMAFLGDCQNGCGGT*ESAFVG
Trigger: ACCTACAAATGCAGATTCCCAAGTCCCTCCACATCC...GTTCTGGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATATGTAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTATAAGACATTCCCAGTaGCCCTGGTGTCTCAGGATT +
Preference number: 2 (lower is better)
Translates to: VKEDVMWHVPCVCGRNGFIRHSQ*PWCLRI
Trigger: AATCCTGAGACACCAGGGGCACTGGGAATGTCTTAT...AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp AGTGACCTCCAGCTCTTCACTCTTACACCCGAAATGAGGATACACAGCCATTTCTATTTCACCCAGTACTaGGAGGTTCCACCATATAGA +
Preference number: 2 (lower is better)
Translates to: SDLQLFTLTPEMRIHSHFYFTQY*EVPPYR
Trigger: TCTATATGGTGGAACCTCCCAGTACTGGGTGAAATA...GAAATGGCTGTGTATCCTCATTTCGGGTGTAAGAGTGAAGAGCTGGAGGTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTAGGGACTTGGGAATCTaGATTTGTAGGTTTGAGTGG +
Preference number: 2 (lower is better)
Translates to: VKEDVMWHVPCVCGRNGFRDLGI*ICRFEW
Trigger: CCACTCAAACCTACAAATGCAGATTCCCAAGTCCCT...AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp GACTGCGTGGACATAATTCACATGAATGCCACAGGAATTCATGACACATTGCCTAAGGAAGATGTTATGTaGCATGTGCCGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: DCVDIIHMNATGIHDTLPKEDVM*HVPCVC
Trigger: ACACACACACGGCACATGCCACATAACATCTTCCTT...AGGCAATGTGTCATGAATTCCTGTGGCATTCATGTGAATTATGTCCACGCAGTC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTCTGTGTCTGAACTGGTaGTTACTCTTGCAATCTTCA +
Preference number: 2 (lower is better)
Translates to: VKEDVMWHVPCVCGRNGFLCLNW*LLLQSS
Trigger: TGAAGATTGCAAGAGTAAGCACCAGTTCAGACACAG...AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp CTTGAGAACTGGATTCTGAATATTCCATCTTTGGGTTCTTCACTCCCTGTTGACTTCCACCATATAGAATaGATGCTGGAGGTGGTCAGT +
Preference number: 2 (lower is better)
Translates to: LENWILNIPSLGSSLPVDFHHIE*MLEVVS
Trigger: ACTGACCACCTCCAGCATCCATTCTATATGGTGGAA...GTCAACAGGGAGTGAAGAACCCAAAGATGGAATATTCAGAATCCAGTTCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR TCA 90 bp GTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTTTGAGAACTGGATTCTaGATATTCCATCTTTGGGTT +
Preference number: 2 (lower is better)
Translates to: VKEDVMWHVPCVCGRNGFLRTGF*IFHLWV
Trigger: AACCCAAAGATGGAATATTCAGAATCCAGTTCTCAA...AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CCA 90 bp AAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTTATAGCTCTATACAAATGTaGGTGATCTTTAAGATGGGG +
Preference number: 2 (lower is better)
Translates to: KEDVMWHVPCVCGRNGFYSSIQM*VIFKMG
Trigger: CCCCATCTTAAAGATCACCCACATTTGTATAGAGCT...ATAAAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR GCA 90 bp GTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTGTGTCAGGAAATAAATaGACATTCATTGTAATGGGT +
Preference number: 2 (lower is better)
Translates to: VKEDVMWHVPCVCGRNGFVSGNK*TFIVMG
Trigger: ACCCATTACAATGAATGTGCATTTATTTCCTGACAC...AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 72 bp CACCTGGTACTGCAGCAGCCTTCAGAGGGCATCAGATaGCTGGAAGTTGGACTACAGATGGTTGGGAGCCCC +
Preference number: 3 (lower is better)
Translates to: HLVLQQPSEGIR*LEVGLQMVGSP
Trigger: GGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp TGGTACTGCAGCAGCCTTCAGAGGGCATCAGATGCCTaGAAGTTGGACTACAGATGGTTGGGAGCCCCTGGA +
Preference number: 3 (lower is better)
Translates to: WYCSSLQRASDA*KLDYRWLGAPG
Trigger: TCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 72 bp GCACGTATGTATGTGCACCATGTGCACACCTGGTACTaGAGCAGCCTTCAGAGGGCATCAGATGCCTGGAAG +
Preference number: 3 (lower is better)
Translates to: ARMYVHHVHTWY*SSLQRASDAWK
Trigger: CTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCAGTACCAGGTGTGCACATGGTGCACATACATACGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp GGGCATCAGATGCCTGGAAGTTGGACTACAGATGGTTaGGAGCCCCTGGAATACTGGGAAATCAAACCTGGG +
Preference number: 3 (lower is better)
Translates to: GHQMPGSWTTDG*EPLEYWEIKPG
Trigger: CCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CAA 90 bp GGGACTCTGAACGCAGGCCTGTGTGGCTTTACTTTACTGTGCATGGACTCAGCTGGGATGTGGAGGGACTaGGGAATCTGCATTTGTAGG +
Preference number: 3 (lower is better)
Translates to: GTLNAGLCGFTLLCMDSAGMWRD*GICICR
Trigger: CCTACAAATGCAGATTCCCAAGTCCCTCCACATCCC...AGCTGAGTCCATGCACAGTAAAGTAAAGCCACACAGGCCTGCGTTCAGAGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp CTCAGTTTATCAGCGCCTACAAGGCAGGCAGAGCAGTaGCTATTTCACCCAGTACTGGGAGGTTCCACCATA +
Preference number: 3 (lower is better)
Translates to: LSLSAPTRQAEQ*LFHPVLGGSTI
Trigger: TATGGTGGAACCTCCCAGTACTGGGTGAAATAGCCACTGCTCTGCCTGCCTTGTAGGCGCTGATAAACTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CAA 90 bp AGGATTACATATGACACACTTCAGTGCATGGCTTTCCTTGGGGATTGCCAGAACTGCAATCTTCAGTTGTaGGTGGGGTGGGGCCCTCCT +
Preference number: 3 (lower is better)
Translates to: RITYDTLQCMAFLGDCQNCNLQL*VGWGPP
Trigger: AGGAGGGCCCCACCCCACCAACAACTGAAGATTGCA...GTTCTGGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATATGTAATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CAA 90 bp GCCTTCAGAGGGCATCAGATGCCTGGAAGTTGGACTACAGATGGTTGGGAGCCCCTGAATATTCCATCTTaGGGTTCTTCACTCCCTGTT +
Preference number: 3 (lower is better)
Translates to: AFRGHQMPGSWTTDGWEPLNIPS*GSSLPV
Trigger: AACAGGGAGTGAAGAACCCAAAGATGGAATATTCAG...GGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 72 bp AACACCTGGGAAAAGCTCAAAGGTCGCAGTCAGAGCTaGATGACTGATCACCAGAGTCACCTGGAGAGCCAT +
Preference number: 3 (lower is better)
Translates to: NTWEKLKGRSQS*MTDHQSHLESH
Trigger: ATGGCTCTCCAGGTGACTCTGGTGATCAGTCATTCAGCTCTGACTGCGACCTTTGAGCTTTTCCCAGGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp ATTTCACCCAGTACTGGGAGGTTCCACCATATAGAATaGATGCTGGAGGTGGTCAGTTCTGCTGTGGAGGCT +
Preference number: 3 (lower is better)
Translates to: ISPSTGRFHHIE*MLEVVSSAVEA
Trigger: AGCCTCCACAGCAGAACTGACCACCTCCAGCATCCATTCTATATGGTGGAACCTCCCAGTACTGGGTGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp GGTGCTTACTCTTGCAATCTTCAGTTGTTGGTGGGGTaGGGCCCTCCTTTTGAGTTCCCACTTCTACCATTC +
Preference number: 3 (lower is better)
Translates to: GAYSCNLQLLVG*GPPFEFPLLPF
Trigger: GAATGGTAGAAGTGGGAACTCAAAAGGAGGGCCCCACCCCACCAACAACTGAAGATTGCAAGAGTAAGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp TGCCTGGAAGTTGGACTACAGATGGTTGGGAGCCCCTaGAATACTGGGAAATCAAACCTGGGTCCTCTACAA +
Preference number: 3 (lower is better)
Translates to: CLEVGLQMVGSP*NTGKSNLGPLQ
Trigger: TTGTAGAGGACCCAGGTTTGATTTCCCAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp CCCTGGAACCTCCCAGAAGTTAAGGAAGATGTTATGTaGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTT +
Preference number: 3 (lower is better)
Translates to: PWNLPEVKEDVM*HVPCVCGRNGF
Trigger: AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAACTTCTGGGAGGTTCCAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR-3UTR CAA 90 bp AAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTTATGGTGGGGCCCTCCTTTaGAGTTCCCACTTCTACCAT +
Preference number: 3 (lower is better)
Translates to: KEDVMWHVPCVCGRNGFYGGALL*SSHFYH
Trigger: ATGGTAGAAGTGGGAACTCAAAAGGAGGGCCCCACC...ATAAAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 72 bp GACACAGAGTCTGCAAAAGCTCTATACAAATGTGGGTaGTCTTTAAGATGGGGTAGGATGGCGAGGAGACAC +
Preference number: 3 (lower is better)
Translates to: DTESAKALYKCG*SLRWGRMARRH
Trigger: GTGTCTCCTCGCCATCCTACCCCATCTTAAAGATCACCCACATTTGTATAGAGCTTTTGCAGACTCTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 72 bp GGAAAAGCTCAAAGGTCGCAGTCAGAGCTGAATGACTaGTCACCAGAGTCACCTGGAGAGCCATATTTTATC +
Preference number: 3 (lower is better)
Translates to: GKAQRSQSELND*SPESPGEPYFI
Trigger: GATAAAATATGGCTCTCCAGGTGACTCTGGTGATCAGTCATTCAGCTCTGACTGCGACCTTTGAGCTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 72 bp CTTGATCCATGTCCTCATTACCTGTGTCTGAACTGGTaGTTACTCTTGCAATCTTCAGTTGTTGGTGGGGTG +
Preference number: 3 (lower is better)
Translates to: LDPCPHYLCLNW*LLLQSSVVGGV
Trigger: CACCCCACCAACAACTGAAGATTGCAAGAGTAAGCACCAGTTCAGACACAGGTAATGAGGACATGGATCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp GGTGTCTCAGGATTACATATGACACACTTCAGTGCATaGCTTTCCTTGGGGATTGCCAGAACTGAGATTCCA +
Preference number: 3 (lower is better)
Translates to: GVSGLHMTHFSA*LSLGIARTEIP
Trigger: TGGAATCTCAGTTCTGGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATATGTAATCCTGAGACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CCA 72 bp GCATCAAGAAGAAATTCTTCCTGTGAGACAGGTCCCTaGAACCTCCCAGAAGTTAAGGAAGATGTTATGTGG +
Preference number: 3 (lower is better)
Translates to: ASRRNSSCETGP*NLPEVKEDVMW
Trigger: CCACATAACATCTTCCTTAACTTCTGGGAGGTTCCAGGGACCTGTCTCACAGGAAGAATTTCTTCTTGATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 72 bp CGTGGACATAATTCACATGAATGCCACAGGAATTCATaGCACATTGCCTTAGCCACTGTAGTACCCACACTA +
Preference number: 3 (lower is better)
Translates to: RGHNSHECHRNS*HIALATVVPTL
Trigger: TAGTGTGGGTACTACAGTGGCTAAGGCAATGTGTCATGAATTCCTGTGGCATTCATGTGAATTATGTCCACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR GCA 72 bp ACCTCCCAGAAGTTAAGGAAGATGTTATGTGGCATGTaGCGTGTGTGTGTGGAAGGAATGGATTTTATACAA +
Preference number: 3 (lower is better)
Translates to: TSQKLRKMLCGM*RVCVEGMDFIQ
Trigger: TTGTATAAAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAACTTCTGGGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR TCA 72 bp GTAGTACCCACACTACTTACATGCATGGTCCAGCTTTaGTGTGAATCCAGTCTACTTAGCATCAAGAAGAAA +
Preference number: 3 (lower is better)
Translates to: VVPTLLTCMVQL*CESSLLSIKKK
Trigger: TTTCTTCTTGATGCTAAGTAGACTGGATTCACATCAAAGCTGGACCATGCATGTAAGTAGTGTGGGTACTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 72 bp GCAATCTTCAGTTGTTGGTGGGGTGGGGCCCTCCTTTaGAGTTCCCACTTCTACCATTCCTGCCGTGTCAGG +
Preference number: 4 (lower is better)
Translates to: AIFSCWWGGALL*SSHFYHSCRVR
Trigger: CCTGACACGGCAGGAATGGTAGAAGTGGGAACTCAAAAGGAGGGCCCCACCCCACCAACAACTGAAGATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 72 bp TGCAGCAGCCTTCAGAGGGCATCAGATGCCTGGAAGTaGGACTACAGATGGTTGGGAGCCCCTGGAATACTG +
Preference number: 4 (lower is better)
Translates to: CSSLQRASDAWK*DYRWLGAPGIL
Trigger: CAGTATTCCAGGGGCTCCCAACCATCTGTAGTCCAACTTCCAGGCATCTGATGCCCTCTGAAGGCTGCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 72 bp TGTCCTCATTACCTGTGTCTGAACTGGTGCTTACTCTaGCAATCTTCAGTTGTTGGTGGGGTGGGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: CPHYLCLNWCLL*QSSVVGGVGPS
Trigger: GGAGGGCCCCACCCCACCAACAACTGAAGATTGCAAGAGTAAGCACCAGTTCAGACACAGGTAATGAGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
CDS-3UTR TCA 90 bp GCCTACAAGGCAGGCAGAGCAGTGGCTATTTCACCCAGTACTGGGAGGTTCCACTTATTCACCAGGGCTTaGATTTCTACAGGGTCTTTT +
Preference number: 4 (lower is better)
Translates to: AYKAGRAVAISPSTGRFHLFTRA*ISTGSF
Trigger: AAAAGACCCTGTAGAAATTCAAGCCCTGGTGAATAA...GTGGAACCTCCCAGTACTGGGTGAAATAGCCACTGCTCTGCCTGCCTTGTAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 72 bp GGATTACATATGACACACTTCAGTGCATGGCTTTCCTaGGGGATTGCCAGAACTGAGATTCCAGTGTGCATG +
Preference number: 4 (lower is better)
Translates to: GLHMTHFSAWLS*GIARTEIPVCM
Trigger: CATGCACACTGGAATCTCAGTTCTGGCAATCCCCAAGGAAAGCCATGCACTGAAGTGTGTCATATGTAATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
3UTR CAA 72 bp TCTAACCTTGAGAACTGGATTCTGAATATTCCATCTTaGGGTTCTTCACTCCCTGTTGACTCTAAGGTGTTA +
Preference number: 4 (lower is better)
Translates to: SNLENWILNIPS*GSSLPVDSKVL
Trigger: TAACACCTTAGAGTCAACAGGGAGTGAAGAACCCAAAGATGGAATATTCAGAATCCAGTTCTCAAGGTTAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
CDS-3UTR CAA 90 bp AGTGACCTCCAGCTCTTCACTCTTACACCCGAAATGAGGATACACAGCCATTTCTTTATTCACCAGGGCTaGAATTTCTACAGGGTCTTT +
Preference number: 5 (lower is better)
Translates to: SDLQLFTLTPEMRIHSHFFIHQG*NFYRVF
Trigger: AAAGACCCTGTAGAAATTCAAGCCCTGGTGAATAAA...GAAATGGCTGTGTATCCTCATTTCGGGTGTAAGAGTGAAGAGCTGGAGGTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
CDS-3UTR CAA 90 bp GTTAAGGAAGATGTTATGTGGCATGTGCCGTGTGTGTGTGGAAGGAATGGATTTTTCTCAATGATAAGCTaGTCAGTTGAGTATAGTTGG +
Preference number: 5 (lower is better)
Translates to: VKEDVMWHVPCVCGRNGFFSMIS*SVEYSW
Trigger: CCAACTATACTCAACTGACAAGCTTATCATTGAGAA...AAATCCATTCCTTCCACACACACACGGCACATGCCACATAACATCTTCCTTAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8
CDS CCA 72 bp ATGATAAGCTTGTCAGTTGAGTATAGTTGGCCAATATaGACCTGTCTGCGGATTATTTCAAGGTCTCTTTTG +
Preference number: 6 (lower is better)
Translates to: MISLSVEYSWPI*TCLRIISRSLL
Trigger: CAAAAGAGACCTTGAAATAATCCGCAGACAGGTCCATATTGGCCAACTATACTCAACTGACAAGCTTATCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053265.8