Pregenerated sensors for LYRM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045854Ensembl transcript IDs: ENSMUST00000062802.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTAACACGCTTCACTTATATTCTTGATCAGAGTGATTATCACCTTTTTGGGTGCGTGGCTCGGAGCCTGTaGAAAACACATGAAAAATCT | + |
|
Preference number: 2 (lower is better) Translates to: LTRFTYILDQSDYHLFGCVARSL*KTHEKS Trigger: AGATTTTTCATGTGTTTTGCACAGGCTCCGAGCCAC...GCACCCAAAAAGGTGATAATCACTCTGATCAAGAATATAAGTGAAGCGTGTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000062802.5 |
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| 3UTR TCA 72 bp | TTGATCAGAGTGATTATCACCTTTTTGGGTGCTCTATaGCAGTGGCTCGGAGCCTGTGCAAAACACATGAAA | + |
|
Preference number: 3 (lower is better) Translates to: LIRVIITFLGAL*QWLGACAKHMK Trigger: TTTCATGTGTTTTGCACAGGCTCCGAGCCACTGTCATAGAGCACCCAAAAAGGTGATAATCACTCTGATCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062802.5 |
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| CDS-3UTR GCA 90 bp | TTAACACGCTTCACTTATATTCTTGATCAGAGTGATTATCACCTTTTTGGGTGCAGGAGGAGAACTTGCTaGCTTCTCATGAACTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LTRFTYILDQSDYHLFGCRRRTC*LLMNCF Trigger: GAAGCAGTTCATGAGAAGGCAGCAAGTTCTCCTCCT...GCACCCAAAAAGGTGATAATCACTCTGATCAAGAATATAAGTGAAGCGTGTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062802.5 |
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| CDS-3UTR CAA 90 bp | CGCTTCACTTATATTCTTGATCAGAGTGATTATCACCTTTTTGGGTGCTCTATGTCCTTTAGCTGCATATaGCCTTGGGTTATCATCATT | + |
|
Preference number: 5 (lower is better) Translates to: RFTYILDQSDYHLFGCSMSFSCI*PWVIII Trigger: AATGATGATAACCCAAGGCAATATGCAGCTAAAGGA...CATAGAGCACCCAAAAAGGTGATAATCACTCTGATCAAGAATATAAGTGAAGCG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062802.5 |
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| CDS CCA 72 bp | GGCCCAATCCTGAAGGTATTTTCGGTCAGAATCACTTaGAACTTGCCTAATCGCTCGCAAAATCTTTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GPILKVFSVRIT*NLPNRSQNLSV Trigger: TACAGAAAGATTTTGCGAGCGATTAGGCAAGTTCCAAGTGATTCTGACCGAAAATACCTTCAGGATTGGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062802.5 |
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