Pregenerated sensors for LYPD9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052642

Ensembl transcript IDs: ENSMUST00000064614.4

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	ACAAACAAAACCTGCACCTTTAATGCTTCGGTGATGGTGGCTGAGCCTCTGCAGCCGTGGAACACCACTTaGGCTCTGGACTGCACTCTC	+
Preference number: 4 (lower is better) Translates to: TNKTCTFNASVMVAEPLQPWNTT*ALDCTL Trigger: GAGAGTGCAGTCCAGAGCTCAAGTGGTGTTCCACGG...CTGCAGAGGCTCAGCCACCATCACCGAAGCATTAAAGGTGCAGGTTTTGTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS-3UTR CCA 90 bp	ACAAACAAAACCTGCACCTTTAATGCTTCGGTGATGGTGGCTGAGCCTCTGCAGAAAGAAGATGGGGGTTaGGGGTCTGACTCTGGCCCC	+
Preference number: 4 (lower is better) Translates to: TNKTCTFNASVMVAEPLQKEDGG*GSDSGP Trigger: GGGGCCAGAGTCAGACCCCCAACCCCCATCTTCTTT...CTGCAGAGGCTCAGCCACCATCACCGAAGCATTAAAGGTGCAGGTTTTGTTTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS-3UTR TCA 90 bp	ACAAACAAAACCTGCACCTTTAATGCTTCGGTGATGGTGGCTGAGCCTCTGCAGCCCGTTTCTGATGGCTaGCTTACAGATTTCACTTTT	+
Preference number: 4 (lower is better) Translates to: TNKTCTFNASVMVAEPLQPVSDG*LTDFTF Trigger: AAAAGTGAAATCTGTAAGTCAGCCATCAGAAACGGG...CTGCAGAGGCTCAGCCACCATCACCGAAGCATTAAAGGTGCAGGTTTTGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS CAA 90 bp	TTGACACCTGTGTTTATGATGCCGGAGAGCTCCACACACTTTATCTaGTCCGTGGAACACCACTTGAGCTCTGGACTGCACTCTCTCCCC	+
Preference number: 6 (lower is better) Translates to: LTPVFMMPESSTHFI*SVEHHLSSGLHSLP Trigger: GGGGAGAGAGTGCAGTCCAGAGCTCAAGTGGTGTTCCACGGACAAGATAAAGTGTGTGGAGCTCTCCGGCATCATAAACACAGGTGTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS CCA 72 bp	ACACTTTATCTTGTCCGTGGAACACCACTTGAGCTCTaGACTGCACTCTCTCCCCTTCACGGTGAAGCATGT	+
Preference number: 6 (lower is better) Translates to: TLYLVRGTPLEL*TALSPLHGEAC Trigger: ACATGCTTCACCGTGAAGGGGAGAGAGTGCAGTCCAGAGCTCAAGTGGTGTTCCACGGACAAGATAAAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS CAA 72 bp	GTGTTTATGATGCCGGAGAGCTCCACACACTTTATCTaGTCCGTGGAACACCACTTGAGCTCTGGACTGCAC	+
Preference number: 6 (lower is better) Translates to: VFMMPESSTHFI*SVEHHLSSGLH Trigger: GTGCAGTCCAGAGCTCAAGTGGTGTTCCACGGACAAGATAAAGTGTGTGGAGCTCTCCGGCATCATAAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS CAA 72 bp	ACGGTGAAGCATGTGGGACACTTGAGACCGCTGGAGTaGAATTCATCCACTTCCTTCTCCTCTATCTCGTTC	+
Preference number: 6 (lower is better) Translates to: TVKHVGHLRPLE*NSSTSFSSISF Trigger: GAACGAGATAGAGGAGAAGGAAGTGGATGAATTCAACTCCAGCGGTCTCAAGTGTCCCACATGCTTCACCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064614.4
CDS CAA 90 bp	CTCCCCTTCACGGTGAAGCATGTGGGACACTTGAGACCGCTGGAGTaGAATTCATCCACTTCCTTCTCCTCTATCTCGTTCATCGTAATT	+
Preference number: 6 (lower is better) Translates to: LPFTVKHVGHLRPLE*NSSTSFSSISFIVI Trigger: AATTACGATGAACGAGATAGAGGAGAAGGAAGTGGATGAATTCAACTCCAGCGGTCTCAAGTGTCCCACATGCTTCACCGTGAAGGGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064614.4

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