Pregenerated sensors for LYPD6B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026765Ensembl transcript IDs: ENSMUST00000028103.13
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTAGGTCGTCGTCCTCTTGGTTCCTACCAAGTCCTCATGCTCAGTaGTCTGACCTCATGCAGGAGCATTTCAGCAAAGCAAACCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: ARSSSSWFLPSPHAQ*SDLMQEHFSKANLC Trigger: GCAGAGGTTTGCTTTGCTGAAATGCTCCTGCATGAGGTCAGAGCACTGAGCATGAGGACTTGGTAGGAACCAAGAGGACGACGACCTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | AAGAGAGCATTGGATCTCCTGGCACTGGAGCTTTTAGTTGTGAGCTaGTATGTGAGTGCTGAGAATCAAACCTGGGTCCTCCAGGAGATC | + |
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Preference number: 1 (lower is better) Translates to: KRALDLLALELLVVS*YVSAENQTWVLQEI Trigger: GATCTCCTGGAGGACCCAGGTTTGATTCTCAGCACTCACATAGCAGCTCACAACTAAAAGCTCCAGTGCCAGGAGATCCAATGCTCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | CCTCTTGGTTCCTACCAAGTCCTCATGCTCAGTGCTCTGACCTCATaGAGGAGCATTTCAGCAAAGCAAACCTCTGCCTTCTACTTTGTA | + |
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Preference number: 1 (lower is better) Translates to: PLGSYQVLMLSALTS*RSISAKQTSAFYFV Trigger: TACAAAGTAGAAGGCAGAGGTTTGCTTTGCTGAAATGCTCCTGCATGAGGTCAGAGCACTGAGCATGAGGACTTGGTAGGAACCAAGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | GTATATGGGTGTTTTACCTGCATGTATGTCTGTGCACCACATGTCTaGAGTACTCACAGAGGCCAGAAGAGAGCATTGGATCTCCTGGCA | + |
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Preference number: 1 (lower is better) Translates to: VYGCFTCMYVCAPHV*STHRGQKRALDLLA Trigger: TGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGTGAGTACTGCAGACATGTGGTGCACAGACATACATGCAGGTAAAACACCCATATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 90 bp | ATCTTCTTTATCAAGTGCAAGATGGACCTTCGCTCCAGAGTTCGCTaGCCCACTGTTTCTGTGCTTTACATCGCTGGTCTCTGCTTCTCT | + |
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Preference number: 1 (lower is better) Translates to: IFFIKCKMDLRSRVR*PTVSVLYIAGLCFS Trigger: AGAGAAGCAGAGACCAGCGATGTAAAGCACAGAAACAGTGGGCCAGCGAACTCTGGAGCGAAGGTCCATCTTGCACTTGATAAAGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR TCA 90 bp | ACTTATTACGGTAATGGGCAGAAGGGTTACATTTCAGAGATGCTCTaGGATAGCCGCAGAAACAAGAGTCTGACCCAGCAGACTCTGAGG | + |
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Preference number: 1 (lower is better) Translates to: TYYGNGQKGYISEML*DSRRNKSLTQQTLR Trigger: CCTCAGAGTCTGCTGGGTCAGACTCTTGTTTCTGCGGCTATCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCATTACCGTAATAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | ACCTCTGCCTTCTACTTTGTAGTCCAATGCATCTTCTTTATCAAGTaGAAGATGGACCTTCGCTCCAGAGTTCGCTGGCCCACTGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: TSAFYFVVQCIFFIK*KMDLRSRVRWPTVS Trigger: AGAAACAGTGGGCCAGCGAACTCTGGAGCGAAGGTCCATCTTGCACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAAGGCAGAGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR TCA 90 bp | TGTCTAACTCAAAGGTTTGCACCCTATCCCCAACCAGCTCGTAATTaGCAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCAGT | + |
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Preference number: 1 (lower is better) Translates to: CLTQRFAPYPQPARN*QMDSQNELESSPCS Trigger: ACTGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTGGTTGGGGATAGGGTGCAAACCTTTGAGTTAGACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | TTGCTGTCAAAAATGCTGGTTGGCTCTTCTATAGAACTGACAAAATaGAGCATCTCTGGACCAGAACACTGGATGCTAGGTCGTCGTCCT | + |
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Preference number: 1 (lower is better) Translates to: LLSKMLVGSSIELTK*SISGPEHWMLGRRP Trigger: AGGACGACGACCTAGCATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCAACCAGCATTTTTGACAGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | ATGTGCTTCATTAGAGGCCTCCACATTGTCAAGAAACATGCAGCATaGATTACACTGTCTAACTCAAAGGTTTGCACCCTATCCCCAACC | + |
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Preference number: 1 (lower is better) Translates to: MCFIRGLHIVKKHAA*ITLSNSKVCTLSPT Trigger: GGTTGGGGATAGGGTGCAAACCTTTGAGTTAGACAGTGTAATGCATGCTGCATGTTTCTTGACAATGTGGAGGCCTCTAATGAAGCACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | AGCATTTCAGCAAAGCAAACCTCTGCCTTCTACTTTGTAGTCCAATaGATCTTCTTTATCAAGTGCAAGATGGACCTTCGCTCCAGAGTT | + |
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Preference number: 1 (lower is better) Translates to: SISAKQTSAFYFVVQ*IFFIKCKMDLRSRV Trigger: AACTCTGGAGCGAAGGTCCATCTTGCACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAAGGCAGAGGTTTGCTTTGCTGAAATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 90 bp | TACAAAGAACTATGTATATGGGTGTTTTACCTGCATGTATGTCTGTaGACCACATGTCTGCAGTACTCACAGAGGCCAGAAGAGAGCATT | + |
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Preference number: 1 (lower is better) Translates to: YKELCIWVFYLHVCL*TTCLQYSQRPEESI Trigger: AATGCTCTCTTCTGGCCTCTGTGAGTACTGCAGACATGTGGTGCACAGACATACATGCAGGTAAAACACCCATATACATAGTTCTTTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 90 bp | CATAGAATTTTATTCTTTCAGACAGCATGTATCACCCATGGTGCCTaGAAACACAAATTTAGTGACACTGGTAAATGTGCTTCATTAGAG | + |
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Preference number: 1 (lower is better) Translates to: HRILFFQTACITHGA*KHKFSDTGKCASLE Trigger: CTCTAATGAAGCACATTTACCAGTGTCACTAAATTTGTGTTTCCAGGCACCATGGGTGATACATGCTGTCTGAAAGAATAAAATTCTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | CTAGGTCGTCGTCCTCTTGGTTCCTACCAAGTCCTCATGCTCAGTGCTCTGACCTACATCGCTGGTCTCTaGTTCTCTTGGGAACTGCAT | + |
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Preference number: 2 (lower is better) Translates to: LGRRPLGSYQVLMLSALTYIAGL*FSWELH Trigger: ATGCAGTTCCCAAGAGAAGCAGAGACCAGCGATGTA...GGTCAGAGCACTGAGCATGAGGACTTGGTAGGAACCAAGAGGACGACGACCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CAA 90 bp | TGTGCACCACATGTCTGCAGTACTCACAGAGGCCAGAAGAGAGCATaGGATCTCCTGGCACTGGAGCTTTTAGTTGTGAGCTGCTATGTG | + |
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Preference number: 2 (lower is better) Translates to: CAPHVCSTHRGQKRA*DLLALELLVVSCYV Trigger: CACATAGCAGCTCACAACTAAAAGCTCCAGTGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGTGAGTACTGCAGACATGTGGTGCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCAGCCAGAAGAGAGCATTaGATCTCCTGGCACTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: QLVIDKWIHRMNWKAPPAARREH*ISWHWS Trigger: GCTCCAGTGCCAGGAGATCCAATGCTCTCTTCTGGC...TGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CAA 90 bp | CTTCCAGGTGAAGGCCTAGTCAGGCCCGGGCTTATCAAGCTACTCTaGCTGTCAAAAATGCTGGTTGGCTCTTCTATAGAACTGACAAAA | + |
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Preference number: 2 (lower is better) Translates to: LPGEGLVRPGLIKLL*LSKMLVGSSIELTK Trigger: TTTTGTCAGTTCTATAGAAGAGCCAACCAGCATTTTTGACAGCAAGAGTAGCTTGATAAGCCCGGGCCTGACTAGGCCTTCACCTGGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCAACTGCCCTTAACTGCTaGGACATCTCTCCAGACCAT | + |
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Preference number: 2 (lower is better) Translates to: QLVIDKWIHRMNWKAPPATALNC*DISPDH Trigger: ATGGTCTGGAGAGATGTCTCAGCAGTTAAGGGCAGT...TGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | GAATTTTATTCTTTCAGACAGCATGTATCACCCATGGTGCCTGGAAACACAAATAGCTCCCCCTGCAGTTaGTCTGCTCACGGACTAGGT | + |
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Preference number: 2 (lower is better) Translates to: EFYSFRQHVSPMVPGNTNSSPCS*SAHGLG Trigger: ACCTAGTCCGTGAGCAGAGCAACTGCAGGGGGAGCT...ATTTGTGTTTCCAGGCACCATGGGTGATACATGCTGTCTGAAAGAATAAAATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | GTGTTTTACCTGCATGTATGTCTGTGCACCACATGTCTGCAGTACTCACAGAGGAGCAAAGCAAACCTCTaGCTTCTACTTTGTAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: VFYLHVCLCTTCLQYSQRSKANL*LLLCSP Trigger: TGGACTACAAAGTAGAAGGCAGAGGTTTGCTTTGCT...CCTCTGTGAGTACTGCAGACATGTGGTGCACAGACATACATGCAGGTAAAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR CCA 90 bp | TGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTGGACCAGAACACTGGATTGTGCTTTACATCGCTaGTCTCTGCTTCTCTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: WLFYRTDKMQHLWTRTLDCALHR*SLLLLG Trigger: TCCCAAGAGAAGCAGAGACCAGCGATGTAAAGCACA...ATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR CCA 90 bp | TGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTGGACCAGAACACTGGATTTATCAAGTGCAAGATaGACCTTCGCTCCAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: WLFYRTDKMQHLWTRTLDLSSAR*TFAPEF Trigger: GAACTCTGGAGCGAAGGTCCATCTTGCACTTGATAA...ATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | CATGGTGCCTGGAAACACAAATTTAGTGACACTGGTAAATGTGCTTCATTAGAGAGAATCTTAAGTGCATaGTCTCTCTCTCCCACCCCT | + |
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Preference number: 2 (lower is better) Translates to: HGAWKHKFSDTGKCASLERILSA*SLSPTP Trigger: AGGGGTGGGAGAGAGAGAGCATGCACTTAAGATTCT...CTCTAATGAAGCACATTTACCAGTGTCACTAAATTTGTGTTTCCAGGCACCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCAGTCAAAAATGCTGGTTaGCTCTTCTATAGAACTGAC | + |
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Preference number: 2 (lower is better) Translates to: QLVIDKWIHRMNWKAPPAVKNAG*LFYRTD Trigger: GTCAGTTCTATAGAAGAGCCAACCAGCATTTTTGAC...TGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CAA 90 bp | AAATTTAGTGACACTGGTAAATGTGCTTCATTAGAGGCCTCCACATaGTCAAGAAACATGCAGCATGCATTACACTGTCTAACTCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: KFSDTGKCASLEAST*SRNMQHALHCLTQR Trigger: CCTTTGAGTTAGACAGTGTAATGCATGCTGCATGTTTCTTGACAATGTGGAGGCCTCTAATGAAGCACATTTACCAGTGTCACTAAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR TCA 90 bp | CATGGTGCCTGGAAACACAAATTTAGTGACACTGGTAAATGTGCTTCATTAGAGCAACCAGCTCGTAATTaGCAAATGGATTCACAGAAT | + |
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Preference number: 2 (lower is better) Translates to: HGAWKHKFSDTGKCASLEQPARN*QMDSQN Trigger: ATTCTGTGAATCCATTTGTCAATTACGAGCTGGTTG...CTCTAATGAAGCACATTTACCAGTGTCACTAAATTTGTGTTTCCAGGCACCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | GAATTTTATTCTTTCAGACAGCATGTATCACCCATGGTGCCTGGAAACACAAATCAAACCAGGATATACTaGAATCTCCAAAACTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: EFYSFRQHVSPMVPGNTNQTRIY*NLQNCE Trigger: CTCACAGTTTTGGAGATTGCAGTATATCCTGGTTTG...ATTTGTGTTTCCAGGCACCATGGGTGATACATGCTGTCTGAAAGAATAAAATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | CCTTTATTACAAAGAACTATGTATATGGGTGTTTTACCTGCATGTATGTCTGTGATCTTCTTTATCAAGTaGAAGATGGACCTTCGCTCC | + |
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Preference number: 2 (lower is better) Translates to: PLLQRTMYMGVLPACMSVIFFIK*KMDLRS Trigger: GGAGCGAAGGTCCATCTTGCACTTGATAAAGAAGAT...CACAGACATACATGCAGGTAAAACACCCATATACATAGTTCTTTGTAATAAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR GCA 90 bp | CCTTTATTACAAAGAACTATGTATATGGGTGTTTTACCTGCATGTATGTCTGTGATAGAACTGACAAAATaGAGCATCTCTGGACCAGAA | + |
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Preference number: 2 (lower is better) Translates to: PLLQRTMYMGVLPACMSVIELTK*SISGPE Trigger: TTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTAT...CACAGACATACATGCAGGTAAAACACCCATATACATAGTTCTTTGTAATAAAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR TCA 72 bp | GGGTCCTCCAGGAGATCAGTCACTGCCCTTAACTGCTaGGACATCTCTCCAGACCATCCTCTCCCACTTTTC | + |
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Preference number: 3 (lower is better) Translates to: GSSRRSVTALNC*DISPDHPLPLF Trigger: GAAAAGTGGGAGAGGATGGTCTGGAGAGATGTCTCAGCAGTTAAGGGCAGTGACTGATCTCCTGGAGGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | TGGACCAGAACACTGGATGCTAGGTCGTCGTCCTCTTaGTTCCTACCAAGTCCTCATGCTCAGTGCTCTGAC | + |
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Preference number: 3 (lower is better) Translates to: WTRTLDARSSSS*FLPSPHAQCSD Trigger: GTCAGAGCACTGAGCATGAGGACTTGGTAGGAACCAAGAGGACGACGACCTAGCATCCAGTGTTCTGGTCCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | ATCAAGTGCAAGATGGACCTTCGCTCCAGAGTTCGCTaGCCCACTGTTTCTGTGCTTTACATCGCTGGTCTC | + |
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Preference number: 3 (lower is better) Translates to: IKCKMDLRSRVR*PTVSVLYIAGL Trigger: GAGACCAGCGATGTAAAGCACAGAAACAGTGGGCCAGCGAACTCTGGAGCGAAGGTCCATCTTGCACTTGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 72 bp | TCCTACCAAGTCCTCATGCTCAGTGCTCTGACCTCATaGAGGAGCATTTCAGCAAAGCAAACCTCTGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: SYQVLMLSALTS*RSISAKQTSAF Trigger: GAAGGCAGAGGTTTGCTTTGCTGAAATGCTCCTGCATGAGGTCAGAGCACTGAGCATGAGGACTTGGTAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 72 bp | TCGTCCTCTTGGTTCCTACCAAGTCCTCATGCTCAGTaGTCTGACCTCATGCAGGAGCATTTCAGCAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: SSSWFLPSPHAQ*SDLMQEHFSKA Trigger: TGCTTTGCTGAAATGCTCCTGCATGAGGTCAGAGCACTGAGCATGAGGACTTGGTAGGAACCAAGAGGACGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | GAACTGACAAAATGCAGCATCTCTGGACCAGAACACTaGATGCTAGGTCGTCGTCCTCTTGGTTCCTACCAA | + |
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Preference number: 3 (lower is better) Translates to: ELTKCSISGPEH*MLGRRPLGSYQ Trigger: TTGGTAGGAACCAAGAGGACGACGACCTAGCATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTaGAAAGCTCCCCCTGCAGTTGCTCTGCTCACGGAC | + |
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Preference number: 3 (lower is better) Translates to: QLVIDKWIHRMN*KAPPAVALLTD Trigger: GTCCGTGAGCAGAGCAACTGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | TGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTaGACCAGAACACTGGATGCTAGGTCGTCGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: WLFYRTDKMQHL*TRTLDARSSSS Trigger: AGAGGACGACGACCTAGCATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 72 bp | TTCTACTTTGTAGTCCAATGCATCTTCTTTATCAAGTaGAAGATGGACCTTCGCTCCAGAGTTCGCTGGCCC | + |
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Preference number: 3 (lower is better) Translates to: FYFVVQCIFFIK*KMDLRSRVRWP Trigger: GGGCCAGCGAACTCTGGAGCGAAGGTCCATCTTGCACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 72 bp | TGTTTTACCTGCATGTATGTCTGTGCACCACATGTCTaGAGTACTCACAGAGGCCAGAAGAGAGCATTGGAT | + |
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Preference number: 3 (lower is better) Translates to: CFTCMYVCAPHV*STHRGQKRALD Trigger: ATCCAATGCTCTCTTCTGGCCTCTGTGAGTACTGCAGACATGTGGTGCACAGACATACATGCAGGTAAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR TCA 72 bp | CAAAGGTTTGCACCCTATCCCCAACCAGCTCGTAATTaGCAAATGGATTCACAGAATGAACTGGAAAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: QRFAPYPQPARN*QMDSQNELESS Trigger: GGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTGGTTGGGGATAGGGTGCAAACCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 72 bp | GCAAAGCAAACCTCTGCCTTCTACTTTGTAGTCCAATaGATCTTCTTTATCAAGTGCAAGATGGACCTTCGC | + |
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Preference number: 3 (lower is better) Translates to: AKQTSAFYFVVQ*IFFIKCKMDLR Trigger: GCGAAGGTCCATCTTGCACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAAGGCAGAGGTTTGCTTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR GCA 72 bp | AAAATGCTGGTTGGCTCTTCTATAGAACTGACAAAATaGAGCATCTCTGGACCAGAACACTGGATGCTAGGT | + |
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Preference number: 3 (lower is better) Translates to: KMLVGSSIELTK*SISGPEHWMLG Trigger: ACCTAGCATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCAACCAGCATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | TGCTCACGGACTAGGTGGTTAGTGGATACTATTGTTTaGATCCTGACTGTTACAGGGTTAAAGTTTTGGTCC | + |
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Preference number: 3 (lower is better) Translates to: CSRTRWLVDTIV*ILTVTGLKFWS Trigger: GGACCAAAACTTTAACCCTGTAACAGTCAGGATCCAAACAATAGTATCCACTAACCACCTAGTCCGTGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CCA 72 bp | GCTTATCAAGCTACTCTTGCTGTCAAAAATGCTGGTTaGCTCTTCTATAGAACTGACAAAATGCAGCATCTC | + |
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Preference number: 3 (lower is better) Translates to: AYQATLAVKNAG*LFYRTDKMQHL Trigger: GAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCAACCAGCATTTTTGACAGCAAGAGTAGCTTGATAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR-3UTR CAA 90 bp | CTATTTATAAGTGGCTACTCACTCTCTAACACAGGCCCCAAACCAGGATATACTCTTATCAAGCTACTCTaGCTGTCAAAAATGCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LFISGYSLSNTGPKPGYTLIKLL*LSKMLV Trigger: AACCAGCATTTTTGACAGCAAGAGTAGCTTGATAAG...AGTATATCCTGGTTTGGGGCCTGTGTTAGAGAGTGAGTAGCCACTTATAAATAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | TCAAGTGCAAGATGGACCTTCGCTCCAGAGTTCGCTGGCCCACTGTTTCTGTGCCTGCCAGACGTCCTCTaGGCGTGCATTACAGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: SSARWTFAPEFAGPLFLCLPDVL*ACITAK Trigger: CTTCGCTGTAATGCACGCTCAGAGGACGTCTGGCAG...GCACAGAAACAGTGGGCCAGCGAACTCTGGAGCGAAGGTCCATCTTGCACTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | ACTGACAAAATGCAGCATCTCTGGACCAGAACACTGGATGCTAGGTCGTCGTCCATAGCAAGGGAAGCATaGAGAGCCAGGCCAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: TDKMQHLWTRTLDARSSSIAREA*RARPAP Trigger: TGGTGCTGGCCTGGCTCTTCATGCTTCCCTTGCTAT...GGACGACGACCTAGCATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CAA 72 bp | CATGTCTGCAGTACTCACAGAGGCCAGAAGAGAGCATaGGATCTCCTGGCACTGGAGCTTTTAGTTGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: HVCSTHRGQKRA*DLLALELLVVS Trigger: GCTCACAACTAAAAGCTCCAGTGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGTGAGTACTGCAGACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CCA 90 bp | GTGTTTTACCTGCATGTATGTCTGTGCACCACATGTCTGCAGTACTCACAGAGGGTGACAGCTAGAATGTaGCAGAGGAGCAGCATTCTG | + |
|
Preference number: 4 (lower is better) Translates to: VFYLHVCLCTTCLQYSQRVTARM*QRSSIL Trigger: CAGAATGCTGCTCCTCTGCCACATTCTAGCTGTCAC...CCTCTGTGAGTACTGCAGACATGTGGTGCACAGACATACATGCAGGTAAAACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CCA 90 bp | CTATTTATAAGTGGCTACTCACTCTCTAACACAGGCCCCAAACCAGGATATACTCCAGGAGGTAAGGACTaGGGACACTGGAGACACTGC | + |
|
Preference number: 4 (lower is better) Translates to: LFISGYSLSNTGPKPGYTPGGKD*GHWRHC Trigger: GCAGTGTCTCCAGTGTCCCCAGTCCTTACCTCCTGG...AGTATATCCTGGTTTGGGGCCTGTGTTAGAGAGTGAGTAGCCACTTATAAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CAA 72 bp | GAAGGCCTAGTCAGGCCCGGGCTTATCAAGCTACTCTaGCTGTCAAAAATGCTGGTTGGCTCTTCTATAGAA | + |
|
Preference number: 4 (lower is better) Translates to: EGLVRPGLIKLL*LSKMLVGSSIE Trigger: TTCTATAGAAGAGCCAACCAGCATTTTTGACAGCAAGAGTAGCTTGATAAGCCCGGGCCTGACTAGGCCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR GCA 90 bp | GTGTTTTACCTGCATGTATGTCTGTGCACCACATGTCTGCAGTACTCACAGAGGTGGGCAACTCTACGTTaGAGATCATTCCTTCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: VFYLHVCLCTTCLQYSQRWATLR*RSFLHS Trigger: GCTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCA...CCTCTGTGAGTACTGCAGACATGTGGTGCACAGACATACATGCAGGTAAAACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR GCA 90 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCACAATACTGTGTGTCCTaGGGACACCACTTGTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QLVIDKWIHRMNWKAPPAQYCVS*GHHLSS Trigger: AGAAGACAAGTGGTGTCCGCAGGACACACAGTATTG...TGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CCA 90 bp | CTATTTATAAGTGGCTACTCACTCTCTAACACAGGCCCCAAACCAGGATATACTGAAACTGTTTGGGAATaGTGTGGGATCAAGAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LFISGYSLSNTGPKPGYTETVWE*CGIKRG Trigger: CCCCCTCTTGATCCCACACCATTCCCAAACAGTTTC...AGTATATCCTGGTTTGGGGCCTGTGTTAGAGAGTGAGTAGCCACTTATAAATAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCAAAACACCCAGTTCTCTaGGATGATCAAGATCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: QLVIDKWIHRMNWKAPPAKHPVL*DDQDLK Trigger: CTTCAGATCTTGATCATCTCAGAGAACTGGGTGTTT...TGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | TCAAAAATGCTGGTTGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTGGACCCAGTTCTCTGAGATaGTCAAGATCTGAAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: SKMLVGSSIELTKCSISGPSSLR*SRSEGW Trigger: CCATCCTTCAGATCTTGATCATCTCAGAGAACTGGG...TCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCAACCAGCATTTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | CAGCTCGTAATTGACAAATGGATTCACAGAATGAACTGGAAAGCTCCCCCTGCATCACATTGTAGAAGTTaGTGTTCTTTGCAAACACCC | + |
|
Preference number: 4 (lower is better) Translates to: QLVIDKWIHRMNWKAPPASHCRS*CSLQTP Trigger: GGGTGTTTGCAAAGAACATCAACTTCTACAATGTGA...TGCAGGGGGAGCTTTCCAGTTCATTCTGTGAATCCATTTGTCAATTACGAGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR GCA 90 bp | TGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTGGACCAGAACACTGGATCTTCTGCCCATCGATTaGAGTTATAATTATCCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: WLFYRTDKMQHLWTRTLDLLPID*SYNYPL Trigger: CAGGGGATAATTATAACTGCAATCGATGGGCAGAAG...ATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CCA 90 bp | CATGGTGCCTGGAAACACAAATTTAGTGACACTGGTAAATGTGCTTCATTAGAGCATTTGTGTGGTTGGTaGGCAACTCTACGTTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: HGAWKHKFSDTGKCASLEHLCGW*ATLRCR Trigger: TCTGCAACGTAGAGTTGCCCACCAACCACACAAATG...CTCTAATGAAGCACATTTACCAGTGTCACTAAATTTGTGTTTCCAGGCACCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| 3UTR CAA 72 bp | GACACTGGTAAATGTGCTTCATTAGAGGCCTCCACATaGTCAAGAAACATGCAGCATGCATTACACTGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: DTGKCASLEAST*SRNMQHALHCL Trigger: TAGACAGTGTAATGCATGCTGCATGTTTCTTGACAATGTGGAGGCCTCTAATGAAGCACATTTACCAGTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | AAAGCAAACCTCTGCCTTCTACTTTGTAGTCCAATGCATCTTCTTTATCAAGTGAGATCTGAAGGATGGTaGCAGCTAGAATGTGGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: KANLCLLLCSPMHLLYQVRSEGW*QLECGR Trigger: TCTGCCACATTCTAGCTGTCACCATCCTTCAGATCT...CACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAAGGCAGAGGTTTGCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR GCA 90 bp | AAAGCAAACCTCTGCCTTCTACTTTGTAGTCCAATGCATCTTCTTTATCAAGTGCATTACAGCGAAGACTaGATTTGTGTGGTTGGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: KANLCLLLCSPMHLLYQVHYSED*ICVVGG Trigger: CCCACCAACCACACAAATGCAGTCTTCGCTGTAATG...CACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAAGGCAGAGGTTTGCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR TCA 90 bp | AAAGCAAACCTCTGCCTTCTACTTTGTAGTCCAATGCATCTTCTTTATCAAGTGCGGCAGCCGACAAAATaGCATTCATTTTTAGAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: KANLCLLLCSPMHLLYQVRQPTK*HSFLEA Trigger: TGCCTCTAAAAATGAATGTCATTTTGTCGGCTGCCG...CACTTGATAAAGAAGATGCATTGGACTACAAAGTAGAAGGCAGAGGTTTGCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS GCA 90 bp | GACACTGCTGCCAGACGTCCTCTGAGCGTGCATTACAGCGAAGACTaGATTTGTGTGGTTGGTGGGCAACTCTACGTTGCAGATCATTCC | + |
|
Preference number: 5 (lower is better) Translates to: DTAARRPLSVHYSED*ICVVGGQLYVADHS Trigger: GGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGACGTCTGGCAGCAGTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CAA 90 bp | TCAAGTGCAAGATGGACCTTCGCTCCAGAGTTCGCTGGCCCACTGTTTCTGTGCGTGGGCAACTCTACGTaGCAGATCATTCCTTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: SSARWTFAPEFAGPLFLCVGNST*QIIPSQ Trigger: CTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCAC...GCACAGAAACAGTGGGCCAGCGAACTCTGGAGCGAAGGTCCATCTTGCACTTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS CCA 90 bp | ACGTCCTCTGAGCGTGCATTACAGCGAAGACTGCATTTGTGTGGTTaGTGGGCAACTCTACGTTGCAGATCATTCCTTCACAGCAAGACC | + |
|
Preference number: 5 (lower is better) Translates to: TSSERALQRRLHLCG*WATLRCRSFLHSKT Trigger: GGTCTTGCTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS GCA 90 bp | TTACAGCGAAGACTGCATTTGTGTGGTTGGTGGGCAACTCTACGTTaGAGATCATTCCTTCACAGCAAGACCTACACTCCGTGTGTTCCG | + |
|
Preference number: 5 (lower is better) Translates to: LQRRLHLCGWWATLR*RSFLHSKTYTPCVP Trigger: CGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS CCA 90 bp | TCCTCTGAGCGTGCATTACAGCGAAGACTGCATTTGTGTGGTTGGTaGGCAACTCTACGTTGCAGATCATTCCTTCACAGCAAGACCTAC | + |
|
Preference number: 5 (lower is better) Translates to: SSERALQRRLHLCGW*ATLRCRSFLHSKTY Trigger: GTAGGTCTTGCTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS TCA 90 bp | CACTCCGTGTGTTCCGAATCTCGGCTGTGTCGGCAGCCGACAAAATaGCATTCATTTTTAGAGGCACACTTCTTCGTGATGGACGTACTT | + |
|
Preference number: 5 (lower is better) Translates to: HSVCSESRLCRQPTK*HSFLEAHFFVMDVL Trigger: AAGTACGTCCATCACGAAGAAGTGTGCCTCTAAAAATGAATGTCATTTTGTCGGCTGCCGACACAGCCGAGATTCGGAACACACGGAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CAA 90 bp | TGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTGGACCAGAACACTGGATTCCTGCGGACACCACTaGTCTTCTGCCCATCGATTG | + |
|
Preference number: 5 (lower is better) Translates to: WLFYRTDKMQHLWTRTLDSCGHH*SSAHRL Trigger: CAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGA...ATCCAGTGTTCTGGTCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS TCA 90 bp | TTGATGTTCTTTGCAAACACCCAGTTCTCTGAGATGATCAAGATCTaGAGGATGGTGACAGCTAGAATGTGGCAGAGGAGCAGCATTCTG | + |
|
Preference number: 5 (lower is better) Translates to: LMFFANTQFSEMIKI*RMVTARMWQRSSIL Trigger: CAGAATGCTGCTCCTCTGCCACATTCTAGCTGTCACCATCCTTCAGATCTTGATCATCTCAGAGAACTGGGTGTTTGCAAAGAACATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS GCA 90 bp | AACTGTCAAACAATACTGTGTGTCCTGCGGACACCACTTGTCTTCTaGCCATCGATTGCAGTTATAATTATCCCCTGCATTTTCGCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: NCQTILCVLRTPLVF*PSIAVIIIPCIFAS Trigger: ACTTGCGAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGACACACAGTATTGTTTGACAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CAA 90 bp | CCTTTATTACAAAGAACTATGTATATGGGTGTTTTACCTGCATGTATGTCTGTGCAGCGAAGACTGCATTaGTGTGGTTGGTGGGCAACT | + |
|
Preference number: 5 (lower is better) Translates to: PLLQRTMYMGVLPACMSVQRRLH*CGWWAT Trigger: AGTTGCCCACCAACCACACAAATGCAGTCTTCGCTG...CACAGACATACATGCAGGTAAAACACCCATATACATAGTTCTTTGTAATAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS-3UTR CAA 90 bp | TCAAAAATGCTGGTTGGCTCTTCTATAGAACTGACAAAATGCAGCATCTCTGGATCGCAAGTAAAACACTaGAAACTGTTTGGGAATGGT | + |
|
Preference number: 5 (lower is better) Translates to: SKMLVGSSIELTKCSISGSQVKH*KLFGNG Trigger: ACCATTCCCAAACAGTTTCAAGTGTTTTACTTGCGA...TCCAGAGATGCTGCATTTTGTCAGTTCTATAGAAGAGCCAACCAGCATTTTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS GCA 72 bp | GCACCAGGAGGTAAGGACTGGGGACACTGGAGACACTaGTGCCAGACGTCCTCTGAGCGTGCATTACAGCGA | + |
|
Preference number: 6 (lower is better) Translates to: APGGKDWGHWRH*CQTSSERALQR Trigger: TCGCTGTAATGCACGCTCAGAGGACGTCTGGCAGCAGTGTCTCCAGTGTCCCCAGTCCTTACCTCCTGGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS TCA 72 bp | CTGGGGACACTGGAGACACTGCTGCCAGACGTCCTCTaGGCGTGCATTACAGCGAAGACTGCATTTGTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: LGTLETLLPDVL*ACITAKTAFVW Trigger: CCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGACGTCTGGCAGCAGTGTCTCCAGTGTCCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS GCA 72 bp | GCCAGACGTCCTCTGAGCGTGCATTACAGCGAAGACTaGATTTGTGTGGTTGGTGGGCAACTCTACGTTGCA | + |
|
Preference number: 6 (lower is better) Translates to: ARRPLSVHYSED*ICVVGGQLYVA Trigger: TGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGACGTCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS CAA 90 bp | TGCTGCCAGACGTCCTCTGAGCGTGCATTACAGCGAAGACTGCATTaGTGTGGTTGGTGGGCAACTCTACGTTGCAGATCATTCCTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: CCQTSSERALQRRLH*CGWWATLRCRSFLH Trigger: GTGAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGACGTCTGGCAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS TCA 72 bp | CTAGAATGTGGCAGAGGAGCAGCATTCTGTCCACCCTaGTTGGGCAGGTCAAAGTCGTGTGTCTCTGAAAAC | + |
|
Preference number: 6 (lower is better) Translates to: LECGRGAAFCPP*LGRSKSCVSEN Trigger: GTTTTCAGAGACACACGACTTTGACCTGCCCAATCAGGGTGGACAGAATGCTGCTCCTCTGCCACATTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS CAA 72 bp | ACGTCCTCTGAGCGTGCATTACAGCGAAGACTGCATTaGTGTGGTTGGTGGGCAACTCTACGTTGCAGATCA | + |
|
Preference number: 6 (lower is better) Translates to: TSSERALQRRLH*CGWWATLRCRS Trigger: TGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAATGCACGCTCAGAGGACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS CAA 90 bp | ATTACAGCGAAGACTGCATTTGTGTGGTTGGTGGGCAACTCTACGTaGCAGATCATTCCTTCACAGCAAGACCTACACTCCGTGTGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: ITAKTAFVWLVGNST*QIIPSQQDLHSVCS Trigger: GGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTTCGCTGTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS CAA 72 bp | AAGACTGCATTTGTGTGGTTGGTGGGCAACTCTACGTaGCAGATCATTCCTTCACAGCAAGACCTACACTCC | + |
|
Preference number: 6 (lower is better) Translates to: KTAFVWLVGNST*QIIPSQQDLHS Trigger: GGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAACGTAGAGTTGCCCACCAACCACACAAATGCAGTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS TCA 72 bp | TGTTCCGAATCTCGGCTGTGTCGGCAGCCGACAAAATaGCATTCATTTTTAGAGGCACACTTCTTCGTGATG | + |
|
Preference number: 6 (lower is better) Translates to: CSESRLCRQPTK*HSFLEAHFFVM Trigger: CATCACGAAGAAGTGTGCCTCTAAAAATGAATGTCATTTTGTCGGCTGCCGACACAGCCGAGATTCGGAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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| CDS GCA 72 bp | ACAATACTGTGTGTCCTGCGGACACCACTTGTCTTCTaGCCATCGATTGCAGTTATAATTATCCCCTGCATT | + |
|
Preference number: 6 (lower is better) Translates to: TILCVLRTPLVF*PSIAVIIIPCI Trigger: AATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGACACACAGTATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028103.13 |
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