Pregenerated sensors for LYPD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022595Ensembl transcript IDs: ENSMUST00000023260.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGATGGCCATGGCGACACTGGCCGGGTTTaGCCAATGCCATCCACATCC | + |
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Preference number: 4 (lower is better) Translates to: ALGNWDVRDKGVELDGHGDTGRV*PMPSTS Trigger: GGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTC...GCCATGGCCATCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CCA 90 bp | GCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGATGGCCATGGCAGGACTTGGTCACCGTaGAGTCCCCCAGGAAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: ALGNWDVRDKGVELDGHGRTWSP*SPPGKG Trigger: TCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCT...GCCATGGCCATCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CCA 90 bp | CTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGATGGTGCTGGCGCAGGACTTaGTCACCGTGGAGTCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: LLGIRELGCQGQGSGARWCWRRT*SPWSPP Trigger: TGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCA...CCATCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR GCA 90 bp | CTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGATGGCCACCGAAGGCTCACACTTaGTGGCGCAGGACTTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LGIRELGCQGQGSGARWPPKAHT*WRRTWS Trigger: TGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGG...TGGCCATCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR GCA 90 bp | ATGGCCATTGTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGGCAGGCCACCAGGACTaGCCAGGCTGGGTGCCCCAT | + |
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Preference number: 4 (lower is better) Translates to: MAIVFLLGIRELGCQGQGAGHQD*PGWVPH Trigger: ATGGGGCACCCAGCCTGGGCAGTCCTGGTGGCCTGC...CCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATACAATGGCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR TCA 90 bp | CTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGATGGCCATGCACATGGTTTCATTaGTGTGGCAGTGGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LGIRELGCQGQGSGARWPCTWFH*CGSGWW Trigger: CCACCACCCACTGCCACATCAATGAAACCATGTGCA...TGGCCATCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CCA 90 bp | TTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGAAAGGCTCACACTTGCTaGCGCAGGACTTGGTCACCG | + |
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Preference number: 4 (lower is better) Translates to: FLLGIRELGCQGQGSGARKAHTC*RRTWSP Trigger: CGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTT...TCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CCA 90 bp | ATGGCCATTGTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGATTGCAGCAGGACACTaGCCGGGTTTGCCCAATGCC | + |
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Preference number: 4 (lower is better) Translates to: MAIVFLLGIRELGCQGQGIAAGH*PGLPNA Trigger: GGCATTGGGCAAACCCGGCCAGTGTCCTGCTGCAAT...CCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATACAATGGCCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR GCA 90 bp | GTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTGGTGCCCAATATCAGTaGCAACAGCACCATCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: VFLLGIRELGCQGQGSGAGAQYQ*QQHHPG Trigger: ACCTGGATGGTGCTGTTGGCACTGATATTGGGCACC...AGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CCA 90 bp | GTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTTCATTGATGTGGCAGTaGGTGGTGGTGACACAGTTG | + |
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Preference number: 4 (lower is better) Translates to: VFLLGIRELGCQGQGSGASLMWQ*VVVTQL Trigger: CAACTGTGTCACCACCACCCACTGCCACATCAATGA...AGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CCA 90 bp | TTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGAATGGTTTCATTGATGTaGCAGTGGGTGGTGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: FLLGIRELGCQGQGSGARMVSLM*QWVVVT Trigger: TGTCACCACCACCCACTGCCACATCAATGAAACCAT...TCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 90 bp | CTGGCCGGGTTTGCCCAATGCCATCCACATCCGAAGGCTCACACTTaGTGGCGCAGGACTTGGTCACCGTGGAGTCCCCCAGGAAAGGGA | + |
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Preference number: 5 (lower is better) Translates to: LAGFAQCHPHPKAHT*WRRTWSPWSPPGKG Trigger: TCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 90 bp | GACTGCCCAGGCTGGGTGCCCCATCCACGTTGCATAGGTCAGAATTaGAGCAGGACACTGGCCGGGTTTGCCCAATGCCATCCACATCCG | + |
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Preference number: 5 (lower is better) Translates to: DCPGWVPHPRCIGQN*SRTLAGFAQCHPHP Trigger: CGGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCCTGCTGCAATTCTGACCTATGCAACGTGGATGGGGCACCCAGCCTGGGCAGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CCA 90 bp | GCCGGGTTTGCCCAATGCCATCCACATCCGAAGGCTCACACTTGCTaGCGCAGGACTTGGTCACCGTGGAGTCCCCCAGGAAAGGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: AGFAQCHPHPKAHTC*RRTWSPWSPPGKGK Trigger: TTTTCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 90 bp | TGCATAGGTCAGAATTGCAGCAGGACACTGGCCGGGTTTGCCCAATaGCATCCACATCCGAAGGCTCACACTTGCTGGCGCAGGACTTGG | + |
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Preference number: 5 (lower is better) Translates to: CIGQNCSRTLAGFAQ*HPHPKAHTCWRRTW Trigger: CCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCCTGCTGCAATTCTGACCTATGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 90 bp | TCCACGTTGCATAGGTCAGAATTGCAGCAGGACACTGGCCGGGTTTaGCCAATGCCATCCACATCCGAAGGCTCACACTTGCTGGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: STLHRSELQQDTGRV*PMPSTSEGSHLLAQ Trigger: CTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCCTGCTGCAATTCTGACCTATGCAACGTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CCA 90 bp | CAATGCCATCCACATCCGAAGGCTCACACTTGCTGGCGCAGGACTTaGTCACCGTGGAGTCCCCCAGGAAAGGGAAAACAATCTCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: QCHPHPKAHTCWRRT*SPWSPPGKGKQSPG Trigger: CCCTGGAGATTGTTTTCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CAA 90 bp | GTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTTTGCTGGCGCAGGACTaGGTCACCGTGGAGTCCCCC | + |
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Preference number: 5 (lower is better) Translates to: VFLLGIRELGCQGQGSGALLAQD*VTVESP Trigger: GGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAA...AGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CAA 90 bp | CTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTAGATGGTCCGAAGGCTCACACTaGCTGGCGCAGGACTTGGTC | + |
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Preference number: 5 (lower is better) Translates to: LLGIRELGCQGQGSGARWSEGSH*LAQDLV Trigger: GACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGA...CCATCTAGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CAA 90 bp | GTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTGGACACTGGCCGGGTTaGCCCAATGCCATCCACATC | + |
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Preference number: 5 (lower is better) Translates to: VFLLGIRELGCQGQGSGAGHWPG*PNAIHI Trigger: GATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCC...AGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS-3UTR CAA 90 bp | GTATTTCTTCTAGGCATTAGGGAACTGGGATGTCAGGGACAAGGGAGTGGAGCTTTGCATAGGTCAGAATaGCAGCAGGACACTGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: VFLLGIRELGCQGQGSGALHRSE*QQDTGR Trigger: CCGGCCAGTGTCCTGCTGCAATTCTGACCTATGCAA...AGCTCCACTCCCTTGTCCCTGACATCCCAGTTCCCTAATGCCTAGAAGAAATAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CAA 90 bp | ACTGGCCGGGTTTGCCCAATGCCATCCACATCCGAAGGCTCACACTaGCTGGCGCAGGACTTGGTCACCGTGGAGTCCCCCAGGAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: TGRVCPMPSTSEGSH*LAQDLVTVESPRKG Trigger: CCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CCA 72 bp | GCCCAATGCCATCCACATCCGAAGGCTCACACTTGCTaGCGCAGGACTTGGTCACCGTGGAGTCCCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: AQCHPHPKAHTC*RRTWSPWSPPG Trigger: TCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CAA 72 bp | GTTTGCCCAATGCCATCCACATCCGAAGGCTCACACTaGCTGGCGCAGGACTTGGTCACCGTGGAGTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: VCPMPSTSEGSH*LAQDLVTVESP Trigger: GGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 72 bp | TTTGCCCAATGCCATCCACATCCGAAGGCTCACACTTaGTGGCGCAGGACTTGGTCACCGTGGAGTCCCCCA | + |
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Preference number: 6 (lower is better) Translates to: FAQCHPHPKAHT*WRRTWSPWSPP Trigger: TGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 72 bp | CAGAATTGCAGCAGGACACTGGCCGGGTTTGCCCAATaGCATCCACATCCGAAGGCTCACACTTGCTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: QNCSRTLAGFAQ*HPHPKAHTCWR Trigger: GCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCCTGCTGCAATTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CAA 90 bp | CCAATGCCATCCACATCCGAAGGCTCACACTTGCTGGCGCAGGACTaGGTCACCGTGGAGTCCCCCAGGAAAGGGAAAACAATCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PMPSTSEGSHLLAQD*VTVESPRKGKTISR Trigger: CCTGGAGATTGTTTTCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGATGGCATTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CCA 72 bp | CCACATCCGAAGGCTCACACTTGCTGGCGCAGGACTTaGTCACCGTGGAGTCCCCCAGGAAAGGGAAAACAA | + |
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Preference number: 6 (lower is better) Translates to: PHPKAHTCWRRT*SPWSPPGKGKQ Trigger: TTGTTTTCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CAA 72 bp | TCCACATCCGAAGGCTCACACTTGCTGGCGCAGGACTaGGTCACCGTGGAGTCCCCCAGGAAAGGGAAAACA | + |
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Preference number: 6 (lower is better) Translates to: STSEGSHLLAQD*VTVESPRKGKT Trigger: TGTTTTCCCTTTCCTGGGGGACTCCACGGTGACCAAGTCCTGCGCCAGCAAGTGTGAGCCTTCGGATGTGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS GCA 72 bp | CATAGGTCAGAATTGCAGCAGGACACTGGCCGGGTTTaGCCAATGCCATCCACATCCGAAGGCTCACACTTG | + |
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Preference number: 6 (lower is better) Translates to: HRSELQQDTGRV*PMPSTSEGSHL Trigger: CAAGTGTGAGCCTTCGGATGTGGATGGCATTGGGCAAACCCGGCCAGTGTCCTGCTGCAATTCTGACCTATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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| CDS CCA 72 bp | AGCGTAGTCTTGCACATGGTTTCATTGATGTGGCAGTaGGTGGTGGTGACACAGTTGGATGCACTCACAGGA | + |
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Preference number: 6 (lower is better) Translates to: SVVLHMVSLMWQ*VVVTQLDALTG Trigger: TCCTGTGAGTGCATCCAACTGTGTCACCACCACCCACTGCCACATCAATGAAACCATGTGCAAGACTACGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023260.5 |
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