Pregenerated sensors for LYAR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067367Ensembl transcript IDs: ENSMUST00000087514.9, ENSMUST00000114106.8, ENSMUST00000123207.8, ENSMUST00000130721.8, ENSMUST00000132190.8, ENSMUST00000146401.2, ENSMUST00000154975.8, ENSMUST00000155300.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGAAGCCTGTCCTCCCTGGGCTTTCTTCTTCTCCGGTGGGCCGCTaGCCTCGGCGGCCTCCTCCCCAGCAGCCTCATGTCCGGCCTCCT | + |
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Preference number: 1 (lower is better) Translates to: QKPVLPGLSSSPVGR*PRRPPPQQPHVRPP Trigger: AGGAGGCCGGACATGAGGCTGCTGGGGAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGACAGGCTTCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR CCA 90 bp | TCCCTCTTCAGAAGCCTGTCCTCCCTGGGCTTTCTTCTTCTCCGGTaGGCCGCTGGCCTCGGCGGCCTCCTCCCCAGCAGCCTCATGTCC | + |
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Preference number: 1 (lower is better) Translates to: SLFRSLSSLGFLLLR*AAGLGGLLPSSLMS Trigger: GGACATGAGGCTGCTGGGGAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGACAGGCTTCTGAAGAGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR CCA 90 bp | GGGCCCCCATTTCTGTCTGCTCCCTCTTCAGAAGCCTGTCCTCCCTaGGCTTTCTTCTTCTCCGGTGGGCCGCTGGCCTCGGCGGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: GPPFLSAPSSEACPP*AFFFSGGPLASAAS Trigger: GGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGACAGGCTTCTGAAGAGGGAGCAGACAGAAATGGGGGCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR TCA 90 bp | GGCATCTCTGCATGTGGCTTGGCCGTGTGGCTGGGTGGCTGCTGCTaGTCTTGCTCACTGCTGGATGCTTCGGAGAAGATATCCCACACC | + |
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Preference number: 1 (lower is better) Translates to: GISACGLAVWLGGCC*SCSLLDASEKISHT Trigger: GGTGTGGGATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCAAGCCACATGCAGAGATGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR CCA 90 bp | GCTTGGCCGTGTGGCTGGGTGGCTGCTGCTGATCTTGCTCACTGCTaGATGCTTCGGAGAAGATATCCCACACCTGCTCTAGAACGGAGT | + |
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Preference number: 1 (lower is better) Translates to: AWPCGWVAAADLAHC*MLRRRYPTPALERS Trigger: ACTCCGTTCTAGAGCAGGTGTGGGATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR CCA 90 bp | ATTTGTTTTTGCAGATGGAACTTTAGTGATCGGCATCTCTGCATGTaGCTTGGCCGTGTGGCTGGGTGGCTGCTGCTGATCTTGCTCACT | + |
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Preference number: 1 (lower is better) Translates to: ICFCRWNFSDRHLCM*LGRVAGWLLLILLT Trigger: AGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCAAGCCACATGCAGAGATGCCGATCACTAAAGTTCCATCTGCAAAAACAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR GCA 90 bp | ATTCTTCTTCGCCTCGGTTTGCTCTTCTGTGGTGCCATTTGTTTTTaGAGATGGAACTTTAGTGATCGGCATCTCTGCATGTGGCTTGGC | + |
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Preference number: 1 (lower is better) Translates to: ILLRLGLLFCGAICF*RWNFSDRHLCMWLG Trigger: GCCAAGCCACATGCAGAGATGCCGATCACTAAAGTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCGAAGAAGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR CCA 90 bp | TCCTCCCTGGGCTTTCTTCTTCTCCGGTGGGCCGCTGGCCTCGGCGGCCTCCTCCGGCATCTCTGCATGTaGCTTGGCCGTGTGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SSLGFLLLRWAAGLGGLLRHLCM*LGRVAG Trigger: CCCAGCCACACGGCCAAGCCACATGCAGAGATGCCG...GAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR-3UTR CCA 90 bp | TCCTCCCTGGGCTTTCTTCTTCTCCGGTGGGCCGCTGGCCTCGGCGGCCTCCTCCGGTTTGCTCTTCTGTaGTGCCATTTGTTTTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: SSLGFLLLRWAAGLGGLLRFALL*CHLFLQ Trigger: CTGCAAAAACAAATGGCACCACAGAAGAGCAAACCG...GAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR-3UTR CCA 90 bp | CCCCATTTCTGTCTGCTCCCTCTTCAGAAGCCTGTCCTCCCTGGGCTTTCTTCTTCTCTGCATGTGGCTTaGCCGTGTGGCTGGGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: PHFCLLPLQKPVLPGLSSSLHVA*PCGWVA Trigger: AGCCACCCAGCCACACGGCCAAGCCACATGCAGAGA...AGAAGAAAGCCCAGGGAGGACAGGCTTCTGAAGAGGGAGCAGACAGAAATGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR-3UTR CCA 90 bp | GGTTCTTCTTGCGCTTCTTTGGCTTCTGGCCCCTCAGGTTTTCCTGGTGGTTTTGGCCGTGTGGCTGGGTaGCTGCTGCTGATCTTGCTC | + |
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Preference number: 2 (lower is better) Translates to: GSSCASLASGPSGFPGGFGRVAG*LLLILL Trigger: GAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCC...AAAACCACCAGGAAAACCTGAGGGGCCAGAAGCCAAAGAAGCGCAAGAAGAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCCGTGTGGCTGGGTGGCTGCTGCTGATCTTGCTCACTGCTGGATGCTTCGGAAAGCACTGATTTGCTaGAAAAGTTCTCGCACCTTG | + |
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Preference number: 2 (lower is better) Translates to: WPCGWVAAADLAHCWMLRKALIC*KSSRTL Trigger: CAAGGTGCGAGAACTTTTGCAGCAAATCAGTGCTTT...CCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGCCATTTGTTTTTGCAGATGGAACTTTAGTGATCGGCATCTCTGCATGTGGAGAACGGAGTCGCTGTaGACTTTCAGGCTGTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: GAICFCRWNFSDRHLCMWRTESL*TFRLFF Trigger: GAAAAACAGCCTGAAAGTGCACAGCGACTCCGTTCT...CCACATGCAGAGATGCCGATCACTAAAGTTCCATCTGCAAAAACAAATGGCACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCTTCGCCTCGGTTTGCTCTTCTGTGGTGCCATTTGTTTTTGCAGATGGAACAAAGCACTGATTTGCTaGAAAAGTTCTCGCACCTTG | + |
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Preference number: 2 (lower is better) Translates to: LLRLGLLFCGAICFCRWNKALIC*KSSRTL Trigger: CAAGGTGCGAGAACTTTTGCAGCAAATCAGTGCTTT...GTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCGAAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCTTCGCCTCGGTTTGCTCTTCTGTGGTGCCATTTGTTTTTGCAGATGGAACTCAAAAGCACTGATTTaGTGCAAAAGTTCTCGCACC | + |
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Preference number: 2 (lower is better) Translates to: LLRLGLLFCGAICFCRWNSKALI*CKSSRT Trigger: GGTGCGAGAACTTTTGCAGCAAATCAGTGCTTTTGA...GTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCGAAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR CCA 90 bp | CGCCTCGGTTTGCTCTTCTGTGGTGCCATTTGTTTTTGCAGATGGAACTTTAGTGATCTTGCTCACTGCTaGATGCTTCGGAGAAGATAT | + |
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Preference number: 2 (lower is better) Translates to: RLGLLFCGAICFCRWNFSDLAHC*MLRRRY Trigger: ATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATC...ACTAAAGTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR GCA 90 bp | CGCCTCGGTTTGCTCTTCTGTGGTGCCATTTGTTTTTGCAGATGGAACTTTAGTTCAAAAGCACTGATTTaGTGCAAAAGTTCTCGCACC | + |
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Preference number: 2 (lower is better) Translates to: RLGLLFCGAICFCRWNFSSKALI*CKSSRT Trigger: GGTGCGAGAACTTTTGCAGCAAATCAGTGCTTTTGA...ACTAAAGTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR CCA 72 bp | AGAAGCCTGTCCTCCCTGGGCTTTCTTCTTCTCCGGTaGGCCGCTGGCCTCGGCGGCCTCCTCCCCAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: RSLSSLGFLLLR*AAGLGGLLPSS Trigger: GCTGCTGGGGAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGACAGGCTTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR-3UTR CAA 90 bp | CCCTGGGCTTTCTTCTTCTCCGGTGGGCCGCTGGCCTCGGCGGCCTCCTCCCCATGGCTGCTGCTGATCTaGCTCACTGCTGGATGCTTC | + |
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Preference number: 3 (lower is better) Translates to: PWAFFFSGGPLASAASSPWLLLI*LTAGCF Trigger: GAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCA...TGGGGAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR-3UTR CAA 90 bp | CTGTCCTCCCTGGGCTTTCTTCTTCTCCGGTGGGCCGCTGGCCTCGGCGGCCTCCTTCTGTGGTGCCATTaGTTTTTGCAGATGGAACTT | + |
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Preference number: 3 (lower is better) Translates to: LSSLGFLLLRWAAGLGGLLLWCH*FLQMEL Trigger: AAGTTCCATCTGCAAAAACAAATGGCACCACAGAAG...GAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| 3UTR TCA 72 bp | GCATGTGGCTTGGCCGTGTGGCTGGGTGGCTGCTGCTaGTCTTGCTCACTGCTGGATGCTTCGGAGAAGATA | + |
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Preference number: 3 (lower is better) Translates to: ACGLAVWLGGCC*SCSLLDASEKI Trigger: TATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCAAGCCACATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR GCA 72 bp | CCGTGTGGCTGGGTGGCTGCTGCTGATCTTGCTCACTaGTGGATGCTTCGGAGAAGATATCCCACACCTGCT | + |
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Preference number: 3 (lower is better) Translates to: PCGWVAAADLAH*WMLRRRYPTPA Trigger: AGCAGGTGTGGGATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR CAA 90 bp | TGGCCGTGTGGCTGGGTGGCTGCTGCTGATCTTGCTCACTGCTGGATGCTTCGGACCTTGGGGCTGACGTaGGGTTTCTTTATTAACTCA | + |
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Preference number: 3 (lower is better) Translates to: WPCGWVAAADLAHCWMLRTLGLT*GFFINS Trigger: TGAGTTAATAAAGAAACCCAACGTCAGCCCCAAGGT...CCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACACGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR CCA 72 bp | TGTGGCTGGGTGGCTGCTGCTGATCTTGCTCACTGCTaGATGCTTCGGAGAAGATATCCCACACCTGCTCTA | + |
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Preference number: 3 (lower is better) Translates to: CGWVAAADLAHC*MLRRRYPTPAL Trigger: TAGAGCAGGTGTGGGATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCAGCCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR GCA 72 bp | TGTTTTTGCAGATGGAACTTTAGTGATCGGCATCTCTaGATGTGGCTTGGCCGTGTGGCTGGGTGGCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: CFCRWNFSDRHL*MWLGRVAGWLL Trigger: CAGCAGCCACCCAGCCACACGGCCAAGCCACATGCAGAGATGCCGATCACTAAAGTTCCATCTGCAAAAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR CAA 90 bp | GAGAAGATATCCCACACCTGCTCTAGAACGGAGTCGCTGTGCACTTTCAGGCTGATCAAAAGCACTGATTaGCTGCAAAAGTTCTCGCAC | + |
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Preference number: 3 (lower is better) Translates to: EKISHTCSRTESLCTFRLIKSTD*LQKFSH Trigger: GTGCGAGAACTTTTGCAGCAAATCAGTGCTTTTGAT...CAGCCTGAAAGTGCACAGCGACTCCGTTCTAGAGCAGGTGTGGGATATCTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR GCA 72 bp | CGCCTCGGTTTGCTCTTCTGTGGTGCCATTTGTTTTTaGAGATGGAACTTTAGTGATCGGCATCTCTGCATG | + |
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Preference number: 3 (lower is better) Translates to: RLGLLFCGAICF*RWNFSDRHLCM Trigger: CATGCAGAGATGCCGATCACTAAAGTTCCATCTGCAAAAACAAATGGCACCACAGAAGAGCAAACCGAGGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR CAA 90 bp | TCTGTGGTGCCATTTGTTTTTGCAGATGGAACTTTAGTGATCGGCATCTCTGCAACCTTGGGGCTGACGTaGGGTTTCTTTATTAACTCA | + |
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Preference number: 3 (lower is better) Translates to: SVVPFVFADGTLVIGISATLGLT*GFFINS Trigger: TGAGTTAATAAAGAAACCCAACGTCAGCCCCAAGGT...TGCAGAGATGCCGATCACTAAAGTTCCATCTGCAAAAACAAATGGCACCACAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR-3UTR CAA 90 bp | CTAGAACGGAGTCGCTGTGCACTTTCAGGCTGTTTTTCATCCAGTTCTGAAACTATCAAAAGCACTGATTaGCTGCAAAAGTTCTCGCAC | + |
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Preference number: 3 (lower is better) Translates to: LERSRCALSGCFSSSSETIKSTD*LQKFSH Trigger: GTGCGAGAACTTTTGCAGCAAATCAGTGCTTTTGAT...AGTTTCAGAACTGGATGAAAAACAGCCTGAAAGTGCACAGCGACTCCGTTCTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| 3UTR CAA 72 bp | GAGTGCTTTGGCCGCTTCCGTTTCCCTGCTGCTGTCTaGGTCTGCCCCTCGGCAGCATCCTCCCCAGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: ECFGRFRFPAAV*VCPSAASSPGP Trigger: GGGCCCTGGGGAGGATGCTGCCGAGGGGCAGACCAAGACAGCAGCAGGGAAACGGAAGCGGCCAAAGCACTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| CDS-3UTR GCA 90 bp | TCCTCCCTGGGCTTTCTTCTTCTCCGGTGGGCCGCTGGCCTCGGCGGCCTCCTCCTTTCCCACAGTCAATaGAGGAAAGACATTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: SSLGFLLLRWAAGLGGLLLSHSQ*RKDIHS Trigger: ACTGTGAATGTCTTTCCTGCATTGACTGTGGGAAAG...GAGGAGGCCGCCGAGGCCAGCGGCCCACCGGAGAAGAAGAAAGCCCAGGGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| CDS-3UTR GCA 90 bp | TGGGTGGCTGCTGCTGATCTTGCTCACTGCTGGATGCTTCGGAGAAGATATCCCCTGCAGTTAGACACATaGTTTTCCACTTGTATTTTC | + |
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Preference number: 4 (lower is better) Translates to: WVAAADLAHCWMLRRRYPLQLDT*FSTCIF Trigger: GAAAATACAAGTGGAAAAGCATGTGTCTAACTGCAG...GGGATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGCCACCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| CDS-3UTR GCA 90 bp | CCCCATTTCTGTCTGCTCCCTCTTCAGAAGCCTGTCCTCCCTGGGCTTTCTTCTCTGCAGTTAGACACATaGTTTTCCACTTGTATTTTC | + |
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Preference number: 4 (lower is better) Translates to: PHFCLLPLQKPVLPGLSSLQLDT*FSTCIF Trigger: GAAAATACAAGTGGAAAAGCATGTGTCTAACTGCAG...AGAAGAAAGCCCAGGGAGGACAGGCTTCTGAAGAGGGAGCAGACAGAAATGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000154975.8 |
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| CDS-3UTR GCA 90 bp | CTGGGAACATTATCAAAAGCACTGATTTGCTGCAAAAGTTCTCGCACCTTGGGGCTTTCCCACAGTCAATaGAGGAAAGACATTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: LGTLSKALICCKSSRTLGLSHSQ*RKDIHS Trigger: ACTGTGAATGTCTTTCCTGCATTGACTGTGGGAAAG...CCCCAAGGTGCGAGAACTTTTGCAGCAAATCAGTGCTTTTGATAATGTTCCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCTGATCTTGCTCACTGCTGGATGCTTCGGAGAAGATATCCCACACCTCACATGCTTTTCCACTaGTATTTTCTTCACGGATTC | + |
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Preference number: 5 (lower is better) Translates to: AAADLAHCWMLRRRYPTPHMLFH*YFLHGF Trigger: GAATCCGTGAAGAAAATACAAGTGGAAAAGCATGTG...AGGTGTGGGATATCTTCTCCGAAGCATCCAGCAGTGAGCAAGATCAGCAGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| CDS TCA 90 bp | GTGTCTTGGCTTCATAGCCTTTGCCTCCGTACTTCTGACCTTCACTaGTGCACTTCACATGGCTTTTGTAGTCATCACCCCAGAAATCTT | + |
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Preference number: 5 (lower is better) Translates to: VSWLHSLCLRTSDLH*CTSHGFCSHHPRNL Trigger: AAGATTTCTGGGGTGATGACTACAAAAGCCATGTGAAGTGCATCAGTGAAGGTCAGAAGTACGGAGGCAAAGGCTATGAAGCCAAGACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000087514.9 ENSMUST00000114106.8 ENSMUST00000123207.8 ENSMUST00000130721.8 ENSMUST00000132190.8 ENSMUST00000155300.8 |
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| CDS-3UTR CAA 90 bp | ACTGATTTGCTGCAAAAGTTCTCGCACCTTGGGGCTGACGTTGGGTTTCTTTATCACATGCTTTTCCACTaGTATTTTCTTCACGGATTC | + |
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Preference number: 5 (lower is better) Translates to: TDLLQKFSHLGADVGFLYHMLFH*YFLHGF Trigger: GAATCCGTGAAGAAAATACAAGTGGAAAAGCATGTG...ATAAAGAAACCCAACGTCAGCCCCAAGGTGCGAGAACTTTTGCAGCAAATCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000146401.2 ENSMUST00000154975.8 |
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| CDS CCA 72 bp | CTTAATGGTCCCCTTCCAGTTGAATTTACCTTTCGATaGAGCCTCGTGGTCCTTGGCCTCTCCCTCTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: LNGPLPVEFTFR*SLVVLGLSLFR Trigger: CCTGAAGAGGGAGAGGCCAAGGACCACGAGGCTCCATCGAAAGGTAAATTCAACTGGAAGGGGACCATTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087514.9 ENSMUST00000114106.8 |
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| CDS CAA 90 bp | TTGTCTGGAGCCTGTTTCAAAACAGCCTTAATGGTCCCCTTCCAGTaGAATTTACCTTTCGATGGAGCCTCGTGGTCCTTGGCCTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: LSGACFKTALMVPFQ*NLPFDGASWSLASP Trigger: GGGAGAGGCCAAGGACCACGAGGCTCCATCGAAAGGTAAATTCAACTGGAAGGGGACCATTAAGGCTGTTTTGAAACAGGCTCCAGACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087514.9 ENSMUST00000114106.8 |
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| CDS TCA 72 bp | CTTCATAGCCTTTGCCTCCGTACTTCTGACCTTCACTaGTGCACTTCACATGGCTTTTGTAGTCATCACCCC | + |
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Preference number: 6 (lower is better) Translates to: LHSLCLRTSDLH*CTSHGFCSHHP Trigger: GGGGTGATGACTACAAAAGCCATGTGAAGTGCATCAGTGAAGGTCAGAAGTACGGAGGCAAAGGCTATGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000087514.9 ENSMUST00000114106.8 ENSMUST00000123207.8 ENSMUST00000130721.8 ENSMUST00000132190.8 ENSMUST00000155300.8 |
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| CDS CCA 72 bp | TCCATGCCTGCTGTTTTGCATCACCTTTGTGTGTCTTaGCTTCATAGCCTTTGCCTCCGTACTTCTGACCTT | + |
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Preference number: 6 (lower is better) Translates to: SMPAVLHHLCVS*LHSLCLRTSDL Trigger: AAGGTCAGAAGTACGGAGGCAAAGGCTATGAAGCCAAGACACACAAAGGTGATGCAAAACAGCAGGCATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000087514.9 ENSMUST00000114106.8 ENSMUST00000123207.8 ENSMUST00000130721.8 ENSMUST00000132190.8 ENSMUST00000155300.8 |
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| CDS CAA 72 bp | GCCTGTTTCAAAACAGCCTTAATGGTCCCCTTCCAGTaGAATTTACCTTTCGATGGAGCCTCGTGGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: ACFKTALMVPFQ*NLPFDGASWSL Trigger: CAAGGACCACGAGGCTCCATCGAAAGGTAAATTCAACTGGAAGGGGACCATTAAGGCTGTTTTGAAACAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087514.9 ENSMUST00000114106.8 |
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