Pregenerated sensors for LY96 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025779

Ensembl transcript IDs: ENSMUST00000026881.11, ENSMUST00000190366.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CATGTCCATGGCACAGAACTTCCTTACGCTTCGGCAACTTTGGAATaGACTCAACATGCACAAATCCATTGGTTCCCCTCAGTCTTATGC	+
Preference number: 5 (lower is better) Translates to: HVHGTELPYASATLE*TQHAQIHWFPSVLC Trigger: GCATAAGACTGAGGGGAACCAATGGATTTGTGCATGTTGAGTTCATTCCAAAGTTGCCGAAGCGTAAGGAAGTTCTGTGCCATGGACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190366.2
CDS CCA 90 bp	ATCATCATGTCCATGGCACAGAACTTCCTTACGCTTCGGCAACTTTaGAATGAACTCAACATGCACAAATCCATTGGTTCCCCTCAGTCT	+
Preference number: 5 (lower is better) Translates to: IIMSMAQNFLTLRQL*NELNMHKSIGSPQS Trigger: AGACTGAGGGGAACCAATGGATTTGTGCATGTTGAGTTCATTCCAAAGTTGCCGAAGCGTAAGGAAGTTCTGTGCCATGGACATGATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190366.2
CDS GCA 90 bp	TTGAAATATAAATATTTTAAGTTTCCTCTTGGAATGAACTCAACATaGACAAATCCATTGGTTCCCCTCAGTCTTATGCAGGGTTCAGAA	+
Preference number: 5 (lower is better) Translates to: LKYKYFKFPLGMNST*TNPLVPLSLMQGSE Trigger: TTCTGAACCCTGCATAAGACTGAGGGGAACCAATGGATTTGTGCATGTTGAGTTCATTCCAAGAGGAAACTTAAAATATTTATATTTCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026881.11
CDS TCA 72 bp	GGCACAGAACTTCCTTACGCTTCGGCAACTTTGGAATaGACTCAACATGCACAAATCCATTGGTTCCCCTCA	+
Preference number: 6 (lower is better) Translates to: GTELPYASATLE*TQHAQIHWFPS Trigger: TGAGGGGAACCAATGGATTTGTGCATGTTGAGTTCATTCCAAAGTTGCCGAAGCGTAAGGAAGTTCTGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190366.2
CDS CCA 72 bp	TCCATGGCACAGAACTTCCTTACGCTTCGGCAACTTTaGAATGAACTCAACATGCACAAATCCATTGGTTCC	+
Preference number: 6 (lower is better) Translates to: SMAQNFLTLRQL*NELNMHKSIGS Trigger: GGAACCAATGGATTTGTGCATGTTGAGTTCATTCCAAAGTTGCCGAAGCGTAAGGAAGTTCTGTGCCATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190366.2
CDS GCA 72 bp	GAAATAATTGCATCGGAGGAGTTGCAGAACCACTGTTaGTTCTCAGATTCAGTCAATATGGGAGAAAGCAGC	+
Preference number: 6 (lower is better) Translates to: EIIASEELQNHC*FSDSVNMGESS Trigger: GCTGCTTTCTCCCATATTGACTGAATCTGAGAAGCAACAGTGGTTCTGCAACTCCTCCGATGCAATTATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026881.11 ENSMUST00000190366.2
CDS CAA 90 bp	ATAACTGTAGGAAATAATTGCATCGGAGGAGTTGCAGAACCACTGTaGCTTCTCAGATTCAGTCAATATGGGAGAAAGCAGCGTCGAAAA	+
Preference number: 6 (lower is better) Translates to: ITVGNNCIGGVAEPL*LLRFSQYGRKQRRK Trigger: TTTTCGACGCTGCTTTCTCCCATATTGACTGAATCTGAGAAGCAACAGTGGTTCTGCAACTCCTCCGATGCAATTATTTCCTACAGTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026881.11 ENSMUST00000190366.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu