Pregenerated sensors for LY6M (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063522Ensembl transcript IDs: ENSMUST00000077004.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCATTCTCTTCACTGGGGCAAGGTGTTGGCCAGGCTTTCAGAGATaGGGAGAGAGGCAGGCACGCACTGAACGGGGACAGGCTCTCTTT | + |
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Preference number: 1 (lower is better) Translates to: SILFTGARCWPGFQR*GERQARTERGQALF Trigger: AAAGAGAGCCTGTCCCCGTTCAGTGCGTGCCTGCCTCTCTCCTCATCTCTGAAAGCCTGGCCAACACCTTGCCCCAGTGAAGAGAATGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 90 bp | CTGGCCTCGAACTCAGAAATCCACATGCCTCTCAGACAAGAGTTCTaGATGCAGCACTCTGGACAGGGGCCACGGTCTCTATCAGCCACA | + |
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Preference number: 1 (lower is better) Translates to: LASNSEIHMPLRQEF*MQHSGQGPRSLSAT Trigger: TGTGGCTGATAGAGACCGTGGCCCCTGTCCAGAGTGCTGCATTCAGAACTCTTGTCTGAGAGGCATGTGGATTTCTGAGTTCGAGGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 90 bp | GGAGTTCAAGAAGTGCCCCACCCATGGCTACACATTCCGGTTGCATaGTGGCACCAAACTCCAACTCTTAACTCTGCAGCTTGTGAGCCC | + |
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Preference number: 1 (lower is better) Translates to: GVQEVPHPWLHIPVA*WHQTPTLNSAACEP Trigger: GGGCTCACAAGCTGCAGAGTTAAGAGTTGGAGTTTGGTGCCATCATGCAACCGGAATGTGTAGCCATGGGTGGGGCACTTCTTGAACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 90 bp | GGACAGGCTCTCTTTGATGGAGGATGTACAATCCCTAGGGCTGACTaGTGGCGTCCTGGAGCTGGACCACAAGCAGAGAAGAGAGGAAAT | + |
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Preference number: 1 (lower is better) Translates to: GQALFDGGCTIPRAD*WRPGAGPQAEKRGN Trigger: ATTTCCTCTCTTCTCTGCTTGTGGTCCAGCTCCAGGACGCCATCAGTCAGCCCTAGGGATTGTACATCCTCCATCAAAGAGAGCCTGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 90 bp | CCTCGAACTCAGAAATCCACATGCCTCTCAGACAAGAGTTCTGAATaGAGCACTCTGGACAGGGGCCACGGTCTCTATCAGCCACATCTG | + |
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Preference number: 1 (lower is better) Translates to: PRTQKSTCLSDKSSE*STLDRGHGLYQPHL Trigger: CAGATGTGGCTGATAGAGACCGTGGCCCCTGTCCAGAGTGCTGCATTCAGAACTCTTGTCTGAGAGGCATGTGGATTTCTGAGTTCGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 90 bp | AGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACATaGCTCTCAGACAAGAGTTCTGAATGCAGCACTCTGGACAGGGGC | + |
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Preference number: 1 (lower is better) Translates to: SSLCRPGWPRTQKST*LSDKSSECSTLDRG Trigger: GCCCCTGTCCAGAGTGCTGCATTCAGAACTCTTGTCTGAGAGGCATGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 90 bp | AGCACACTTCACTACTGGGCCACCAGTCAGCAGGTACAGATGCAATaGAGCTCAACTCTTTTGAAGTGGTTCAGTTCCTCTGAGGTAGTT | + |
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Preference number: 1 (lower is better) Translates to: STLHYWATSQQVQMQ*SSTLLKWFSSSEVV Trigger: AACTACCTCAGAGGAACTGAACCACTTCAAAAGAGTTGAGCTTCATTGCATCTGTACCTGCTGACTGGTGGCCCAGTAGTGAAGTGTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCTTCTCCCACAGCCAGAAGGGAGGCCTCTCCATAGGGTTTCCATCTGTCGCTTGTTGGGCCTCCTaGGGGGCCTACCTCAGCCCC | + |
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Preference number: 2 (lower is better) Translates to: LPFSHSQKGGLSIGFPSVACWAS*GAYLSP Trigger: GGGGCTGAGGTAGGCCCCTCAGGAGGCCCAACAAGC...GACAGATGGAAACCCTATGGAGAGGCCTCCCTTCTGGCTGTGGGAGAAGGGCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 90 bp | GATGAGGAGAGAGGCAGGCACGCACTGAACGGGGACAGGCTCTCTTaGATGGAGGATGTACAATCCCTAGGGCTGACTGATGGCGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: DEERGRHALNGDRLS*MEDVQSLGLTDGVL Trigger: CAGGACGCCATCAGTCAGCCCTAGGGATTGTACATCCTCCATCAAAGAGAGCCTGTCCCCGTTCAGTGCGTGCCTGCCTCTCTCCTCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | CTGAGCTCGTCCACCAGCTTGCCCTTCCCAATCATGTGTCCAGGAGCAGCCTATTTGGGGGCCAGCAGATaGCCAGCTTGCAGACAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LSSSTSLPFPIMCPGAAYLGASR*PACRQE Trigger: CTCTTGTCTGCAAGCTGGTCATCTGCTGGCCCCCAA...ATAGGCTGCTCCTGGACACATGATTGGGAAGGGCAAGCTGGTGGACGAGCTCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGGGGCTCCTGAAGTCCTGAGGAGCTTGGTGTTGCCTCAGGATAGAATCCTCGGTCCACCCCAGGAGTaGGGTATGCTGGGACTACAT | + |
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Preference number: 2 (lower is better) Translates to: TGAPEVLRSLVLPQDRILGPPQE*GMLGLH Trigger: ATGTAGTCCCAGCATACCTCACTCCTGGGGTGGACC...GAGGATTCTATCCTGAGGCAACACCAAGCTCCTCAGGACTTCAGGAGCCCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR GCA 90 bp | ACAGGGGCTCCTGAAGTCCTGAGGAGCTTGGTGTTGCCTCAGGATAGAATCCTCATCTGTCCCAGCATCTaGCCTTCTCCCACAGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: TGAPEVLRSLVLPQDRILICPSI*PSPTAR Trigger: TCTGGCTGTGGGAGAAGGGCAGATGCTGGGACAGAT...GAGGATTCTATCCTGAGGCAACACCAAGCTCCTCAGGACTTCAGGAGCCCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CCA 90 bp | AGCTGGACCACAAGCAGAGAAGAGAGGAAATGCTTCAGGCTTCACTCACAGTTGCTGAATGCAGCACTCTaGACAGGGGCCACGGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: SWTTSREERKCFRLHSQLLNAAL*TGATVS Trigger: AGAGACCGTGGCCCCTGTCCAGAGTGCTGCATTCAG...CAACTGTGAGTGAAGCCTGAAGCATTTCCTCTCTTCTCTGCTTGTGGTCCAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 90 bp | GGCGTCTCGTGCAACAATCTTACTGAAACCAGTCTGACCCACACCTaGTTCAAACTAATCTGTCCCAGCATCTGCCCTTCTCCCACAGCC | + |
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Preference number: 2 (lower is better) Translates to: GVSCNNLTETSLTHT*FKLICPSICPSPTA Trigger: GGCTGTGGGAGAAGGGCAGATGCTGGGACAGATTAGTTTGAACAAGGTGTGGGTCAGACTGGTTTCAGTAAGATTGTTGCACGAGACGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | GGAGAGAGGCAGGCACGCACTGAACGGGGACAGGCTCTCTTTGATGGAGGATGTCAGGTACAGATGCAATaGAGCTCAACTCTTTTGAAG | + |
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Preference number: 2 (lower is better) Translates to: GERQARTERGQALFDGGCQVQMQ*SSTLLK Trigger: CTTCAAAAGAGTTGAGCTTCATTGCATCTGTACCTG...ACATCCTCCATCAAAGAGAGCCTGTCCCCGTTCAGTGCGTGCCTGCCTCTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGGGGCTCCTGAAGTCCTGAGGAGCTTGGTGTTGCCTCAGGATAGAATCCTCGTGCAACAATCTTACTaGAACCAGTCTGACCCACAC | + |
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Preference number: 2 (lower is better) Translates to: TGAPEVLRSLVLPQDRILVQQSY*NQSDPH Trigger: GTGTGGGTCAGACTGGTTTCAGTAAGATTGTTGCAC...GAGGATTCTATCCTGAGGCAACACCAAGCTCCTCAGGACTTCAGGAGCCCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR GCA 90 bp | AGGTATGCTGGGACTACATGGCTACATGGCTGGCGTCTCGTGCAACAATCTTACGACAAGAGTTCTGAATaGAGCACTCTGGACAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: RYAGTTWLHGWRLVQQSYDKSSE*STLDRG Trigger: GCCCCTGTCCAGAGTGCTGCATTCAGAACTCTTGTC...GTAAGATTGTTGCACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCATACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACATGCCTCTCAGACAAGAGAAGTGCCCCACCCATaGCTACACATTCCGGTTGCA | + |
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Preference number: 2 (lower is better) Translates to: FVDQAGLELRNPHASQTREVPHP*LHIPVA Trigger: TGCAACCGGAATGTGTAGCCATGGGTGGGGCACTTC...TCTTGTCTGAGAGGCATGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CCA 90 bp | AGGTATGCTGGGACTACATGGCTACATGGCTGGCGTCTCGTGCAACAATCTTACAGCACACTTCACTACTaGGCCACCAGTCAGCAGGTA | + |
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Preference number: 2 (lower is better) Translates to: RYAGTTWLHGWRLVQQSYSTLHY*ATSQQV Trigger: TACCTGCTGACTGGTGGCCCAGTAGTGAAGTGTGCT...GTAAGATTGTTGCACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCATACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR GCA 90 bp | GAATCTAGTTCCCAGATCCATTCTCTTCACTGGGGCAAGGTGTTGGCCAGGCTTTTGGAGTTCAAGAAGTaGCCCACCCATGGCTACACA | + |
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Preference number: 2 (lower is better) Translates to: ESSSQIHSLHWGKVLARLLEFKK*PTHGYT Trigger: TGTGTAGCCATGGGTGGGGCACTTCTTGAACTCCAA...AAGCCTGGCCAACACCTTGCCCCAGTGAAGAGAATGGATCTGGGAACTAGATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR GCA 90 bp | TCACCTGAGTTTGGCCCTCTTTTGGTTCCCAGGGCCTCACAACACACCCTTGTGTTGGACAGTTCTGGATaGTCTTTGCTCCAGAATAGA | + |
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Preference number: 2 (lower is better) Translates to: SPEFGPLLVPRASQHTLVLDSSG*SLLQNR Trigger: TCTATTCTGGAGCAAAGAGCATCCAGAACTGTCCAA...CACAAGGGTGTGTTGTGAGGCCCTGGGAACCAAAAGAGGGCCAAACTCAGGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CCA 90 bp | GTCCTGGAGCTGGACCACAAGCAGAGAAGAGAGGAAATGCTTCAGGCTTCACTCTGTGAGGTTGCCTCTTaGAATCCTTCTGATTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: VLELDHKQRREEMLQASLCEVAS*NPSDWS Trigger: ACTCCAATCAGAAGGATTCCAAGAGGCAACCTCACA...GAGTGAAGCCTGAAGCATTTCCTCTCTTCTCTGCTTGTGGTCCAGCTCCAGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGAGAAGAGAGGAAATGCTTCAGGCTTCACTCACAGTTGGACAGTTCTGGTATCAGCCACATCTGTaGGGTTGCCTCTTGGAATCC | + |
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Preference number: 2 (lower is better) Translates to: KQRREEMLQASLTVGQFWYQPHL*GCLLES Trigger: GGATTCCAAGAGGCAACCTCACAGATGTGGCTGATA...CCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGCATTTCCTCTCTTCTCTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR TCA 90 bp | GAATCTAGTTCCCAGATCCATTCTCTTCACTGGGGCAAGGTGTTGGCCAGGCTTTTACTGAAACCAGTCTaGCCCACACCTTGTTCAAAC | + |
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Preference number: 2 (lower is better) Translates to: ESSSQIHSLHWGKVLARLLLKPV*PTPCSN Trigger: GTTTGAACAAGGTGTGGGTCAGACTGGTTTCAGTAA...AAGCCTGGCCAACACCTTGCCCCAGTGAAGAGAATGGATCTGGGAACTAGATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CCA 90 bp | TCACCTGAGTTTGGCCCTCTTTTGGTTCCCAGGGCCTCACAACACACCCTTGTGTCAACTCTTTTGAAGTaGTTCAGTTCCTCTGAGGTA | + |
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Preference number: 2 (lower is better) Translates to: SPEFGPLLVPRASQHTLVSTLLK*FSSSEV Trigger: TACCTCAGAGGAACTGAACCACTTCAAAAGAGTTGA...CACAAGGGTGTGTTGTGAGGCCCTGGGAACCAAAAGAGGGCCAAACTCAGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CCA 90 bp | GCTTCAGGCTTCACTCACAGTTGGACAGTTCTGGATGCTCTTTGCTCCAGAATATGGAATCCTTCTGATTaGAGTTCAAGAAGTGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: ASGFTHSWTVLDALCSRIWNPSD*SSRSAP Trigger: TGGGGCACTTCTTGAACTCCAATCAGAAGGATTCCA...TATTCTGGAGCAAAGAGCATCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 72 bp | TTCACTGGGGCAAGGTGTTGGCCAGGCTTTCAGAGATaGGGAGAGAGGCAGGCACGCACTGAACGGGGACAG | + |
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Preference number: 3 (lower is better) Translates to: FTGARCWPGFQR*GERQARTERGQ Trigger: CTGTCCCCGTTCAGTGCGTGCCTGCCTCTCTCCTCATCTCTGAAAGCCTGGCCAACACCTTGCCCCAGTGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | AGAATCCTCAGGGTCCACCCCAGGAGTGAGGTATGCTaGGACTACATGGCTACATGGCTGGCGTCTCGTGCA | + |
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Preference number: 3 (lower is better) Translates to: RILRVHPRSEVC*DYMATWLASRA Trigger: TGCACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCATACCTCACTCCTGGGGTGGACCCTGAGGATTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | GATAGAATCCTCAGGGTCCACCCCAGGAGTGAGGTATaGTGGGACTACATGGCTACATGGCTGGCGTCTCGT | + |
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Preference number: 3 (lower is better) Translates to: DRILRVHPRSEV*WDYMATWLASR Trigger: ACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCATACCTCACTCCTGGGGTGGACCCTGAGGATTCTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | GGGTCCACCCCAGGAGTGAGGTATGCTGGGACTACATaGCTACATGGCTGGCGTCTCGTGCAACAATCTTAC | + |
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Preference number: 3 (lower is better) Translates to: GSTPGVRYAGTT*LHGWRLVQQSY Trigger: GTAAGATTGTTGCACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCATACCTCACTCCTGGGGTGGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CAA 90 bp | GGAGAGAGGCAGGCACGCACTGAACGGGGACAGGCTCTCTTTGATGGAGGATGTCAGCAGATGACCAGCTaGCAGACAAGAGTTCTGTTT | + |
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Preference number: 3 (lower is better) Translates to: GERQARTERGQALFDGGCQQMTS*QTRVLF Trigger: AAACAGAACTCTTGTCTGCAAGCTGGTCATCTGCTG...ACATCCTCCATCAAAGAGAGCCTGTCCCCGTTCAGTGCGTGCCTGCCTCTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR-3UTR CAA 90 bp | AGCTGGACCACAAGCAGAGAAGAGAGGAAATGCTTCAGGCTTCACTCACAGTTGCCAGGCCAAAATAGCTaGTTGGGCCTCCTGAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: SWTTSREERKCFRLHSQLPGQNS*LGLLRG Trigger: GCCCCTCAGGAGGCCCAACAAGCTATTTTGGCCTGG...CAACTGTGAGTGAAGCCTGAAGCATTTCCTCTCTTCTCTGCTTGTGGTCCAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | CATGCCTCTCAGACAAGAGTTCTGAATGCAGCACTCTaGACAGGGGCCACGGTCTCTATCAGCCACATCTGT | + |
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Preference number: 3 (lower is better) Translates to: HASQTRVLNAAL*TGATVSISHIC Trigger: ACAGATGTGGCTGATAGAGACCGTGGCCCCTGTCCAGAGTGCTGCATTCAGAACTCTTGTCTGAGAGGCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 72 bp | GAAGTGCCCCACCCATGGCTACACATTCCGGTTGCATaGTGGCACCAAACTCCAACTCTTAACTCTGCAGCT | + |
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Preference number: 3 (lower is better) Translates to: EVPHPWLHIPVA*WHQTPTLNSAA Trigger: AGCTGCAGAGTTAAGAGTTGGAGTTTGGTGCCATCATGCAACCGGAATGTGTAGCCATGGGTGGGGCACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | CAGAAATCCACATGCCTCTCAGACAAGAGTTCTGAATaGAGCACTCTGGACAGGGGCCACGGTCTCTATCAG | + |
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Preference number: 3 (lower is better) Translates to: QKSTCLSDKSSE*STLDRGHGLYQ Trigger: CTGATAGAGACCGTGGCCCCTGTCCAGAGTGCTGCATTCAGAACTCTTGTCTGAGAGGCATGTGGATTTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | ATGCTGGGACTACATGGCTACATGGCTGGCGTCTCGTaGAACAATCTTACTGAAACCAGTCTGACCCACACC | + |
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Preference number: 3 (lower is better) Translates to: MLGLHGYMAGVS*NNLTETSLTHT Trigger: GGTGTGGGTCAGACTGGTTTCAGTAAGATTGTTGCACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | CCCAGGAGTGAGGTATGCTGGGACTACATGGCTACATaGCTGGCGTCTCGTGCAACAATCTTACTGAAACCA | + |
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Preference number: 3 (lower is better) Translates to: PRSEVCWDYMAT*LASRATILLKP Trigger: TGGTTTCAGTAAGATTGTTGCACGAGACGCCAGCCATGTAGCCATGTAGTCCCAGCATACCTCACTCCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACATaGCTCTCAGACAAGAGTTCTGAATGCAGCACTCTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGWPRTQKST*LSDKSSECSTL Trigger: CAGAGTGCTGCATTCAGAACTCTTGTCTGAGAGGCATGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | TGCTTCAGGCTTCACTCACAGTTGGACAGTTCTGGATaGTCTTTGCTCCAGAATAGACTGGGGTTCACAGGG | + |
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Preference number: 3 (lower is better) Translates to: CFRLHSQLDSSG*SLLQNRLGFTG Trigger: CCCTGTGAACCCCAGTCTATTCTGGAGCAAAGAGCATCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | TCCTGGAGCTGGACCACAAGCAGAGAAGAGAGGAAATaGTTCAGGCTTCACTCACAGTTGGACAGTTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: SWSWTTSREERK*FRLHSQLDSSG Trigger: TCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGCATTTCCTCTCTTCTCTGCTTGTGGTCCAGCTCCAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR GCA 72 bp | CTCACAACACACCCTTGTGTAAGAAGGAGGGAACAATaGCATGTAGGCACCTTTCGGTCAAGCCTGGCTCTA | + |
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Preference number: 3 (lower is better) Translates to: LTTHPCVRRREQ*HVGTFRSSLAL Trigger: TAGAGCCAGGCTTGACCGAAAGGTGCCTACATGGCATTGTTCCCTCCTTCTTACACAAGGGTGTGTTGTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | CACATCTGTGAGGTTGCCTCTTGGAATCCTTCTGATTaGAGTTCAAGAAGTGCCCCACCCATGGCTACACAT | + |
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Preference number: 3 (lower is better) Translates to: HICEVASWNPSD*SSRSAPPMATH Trigger: ATGTGTAGCCATGGGTGGGGCACTTCTTGAACTCCAATCAGAAGGATTCCAAGAGGCAACCTCACAGATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | ACGGTCTCTATCAGCCACATCTGTGAGGTTGCCTCTTaGAATCCTTCTGATTGGAGTTCAAGAAGTGCCCCA | + |
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Preference number: 3 (lower is better) Translates to: TVSISHICEVAS*NPSDWSSRSAP Trigger: TGGGGCACTTCTTGAACTCCAATCAGAAGGATTCCAAGAGGCAACCTCACAGATGTGGCTGATAGAGACCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | AGCTTAGAATCTAGTTCCCAGATCCATTCTCTTCACTaGGGCAAGGTGTTGGCCAGGCTTTCAGAGATGAGG | + |
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Preference number: 3 (lower is better) Translates to: SLESSSQIHSLH*GKVLARLSEMR Trigger: CCTCATCTCTGAAAGCCTGGCCAACACCTTGCCCCAGTGAAGAGAATGGATCTGGGAACTAGATTCTAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 72 bp | CACTACTGGGCCACCAGTCAGCAGGTACAGATGCAATaGAGCTCAACTCTTTTGAAGTGGTTCAGTTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: HYWATSQQVQMQ*SSTLLKWFSSS Trigger: AGAGGAACTGAACCACTTCAAAAGAGTTGAGCTTCATTGCATCTGTACCTGCTGACTGGTGGCCCAGTAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 72 bp | GGCCTCTCCATAGGGTTTCCATCTGTCAAGCGTCTTTaGATTCAGGTTAAAGTAGCACACTTCACTACTGGG | + |
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Preference number: 3 (lower is better) Translates to: GLSIGFPSVKRL*IQVKVAHFTTG Trigger: CCCAGTAGTGAAGTGTGCTACTTTAACCTGAATTCAAAGACGCTTGACAGATGGAAACCCTATGGAGAGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR TCA 72 bp | TGGCTACATGGCTGGCGTCTCGTGCAACAATCTTACTaGAACCAGTCTGACCCACACCTTGTTCAAACTAAT | + |
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Preference number: 3 (lower is better) Translates to: WLHGWRLVQQSY*NQSDPHLVQTN Trigger: ATTAGTTTGAACAAGGTGTGGGTCAGACTGGTTTCAGTAAGATTGTTGCACGAGACGCCAGCCATGTAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CCA 72 bp | GAGAAGAGAGGAAATGCTTCAGGCTTCACTCACAGTTaGACAGTTCTGGATGCTCTTTGCTCCAGAATAGAC | + |
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Preference number: 3 (lower is better) Translates to: EKRGNASGFTHS*TVLDALCSRID Trigger: GTCTATTCTGGAGCAAAGAGCATCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGCATTTCCTCTCTTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 72 bp | TTCACAGGGGCTCCTGAAGTCCTGAGGAGCTTGGTGTaGCCTCAGGATAGAATCCTCAGGGTCCACCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FTGAPEVLRSLV*PQDRILRVHPR Trigger: CCTGGGGTGGACCCTGAGGATTCTATCCTGAGGCAACACCAAGCTCCTCAGGACTTCAGGAGCCCCTGTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 72 bp | CTGGGGTTCACAGGGGCTCCTGAAGTCCTGAGGAGCTaGGTGTTGCCTCAGGATAGAATCCTCAGGGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LGFTGAPEVLRS*VLPQDRILRVH Trigger: GTGGACCCTGAGGATTCTATCCTGAGGCAACACCAAGCTCCTCAGGACTTCAGGAGCCCCTGTGAACCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 72 bp | GCCCTCTTTTGGTTCCCAGGGCCTCACAACACACCCTaGTGTAAGAAGGAGGGAACAATGCCATGTAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: ALFWFPGPHNTP*CKKEGTMPCRH Trigger: GTGCCTACATGGCATTGTTCCCTCCTTCTTACACAAGGGTGTGTTGTGAGGCCCTGGGAACCAAAAGAGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS-3UTR GCA 90 bp | GATCTGAGCTCGTCCACCAGCTTGCCCTTCCCAATCATGTGTCCAGGAGCAGCCAGTCCTCTATACCACTaGATTCATGACACTTCAACG | + |
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Preference number: 4 (lower is better) Translates to: DLSSSTSLPFPIMCPGAASPLYH*IHDTST Trigger: CGTTGAAGTGTCATGAATGCAGTGGTATAGAGGACT...GGCTGCTCCTGGACACATGATTGGGAAGGGCAAGCTGGTGGACGAGCTCAGATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS-3UTR CCA 90 bp | GAATCTAGTTCCCAGATCCATTCTCTTCACTGGGGCAAGGTGTTGGCCAGGCTTGCGGTGTATACCAGTTaGTCAAGCAGTAGAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: ESSSQIHSLHWGKVLARLAVYTS*SSSRGS Trigger: AGAGCCTCTACTGCTTGACCAACTGGTATACACCGC...AAGCCTGGCCAACACCTTGCCCCAGTGAAGAGAATGGATCTGGGAACTAGATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS-3UTR TCA 90 bp | GAATCTAGTTCCCAGATCCATTCTCTTCACTGGGGCAAGGTGTTGGCCAGGCTTGAGTTGGCTGTGACATaGTTAATGTCAGGGCAGGTA | + |
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Preference number: 4 (lower is better) Translates to: ESSSQIHSLHWGKVLARLELAVT*LMSGQV Trigger: TACCTGCCCTGACATTAATCATGTCACAGCCAACTC...AAGCCTGGCCAACACCTTGCCCCAGTGAAGAGAATGGATCTGGGAACTAGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 72 bp | TTCAAGAAGTGCCCCACCCATGGCTACACATTCCGGTaGCATGATGGCACCAAACTCCAACTCTTAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: FKKCPTHGYTFR*HDGTKLQLLTL Trigger: CAGAGTTAAGAGTTGGAGTTTGGTGCCATCATGCAACCGGAATGTGTAGCCATGGGTGGGGCACTTCTTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS-3UTR GCA 90 bp | GCTTCAGGCTTCACTCACAGTTGGACAGTTCTGGATGCTCTTTGCTCCAGAATAGTCAGGGCAGGTATATaGACATGTTTTTGTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: ASGFTHSWTVLDALCSRIVRAGI*TCFCHS Trigger: ACTGTGACAAAAACATGTGCATATACCTGCCCTGAC...TATTCTGGAGCAAAGAGCATCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 72 bp | TGCAACAATCTTACTGAAACCAGTCTGACCCACACCTaGTTCAAACTAATCTGTCCCAGCATCTGCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: CNNLTETSLTHT*FKLICPSICPS Trigger: AGAAGGGCAGATGCTGGGACAGATTAGTTTGAACAAGGTGTGGGTCAGACTGGTTTCAGTAAGATTGTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| 3UTR CAA 72 bp | AGAGAAGAGAGGAAATGCTTCAGGCTTCACTCACAGTaGGACAGTTCTGGATGCTCTTTGCTCCAGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: REERKCFRLHSQ*DSSGCSLLQNR Trigger: TCTATTCTGGAGCAAAGAGCATCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGCATTTCCTCTCTTCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS CCA 90 bp | AGGGCAGGTATATGCACATGTTTTTGTCACAGTCGTTTGCTGACCTaGCGGTGTATACCAGTTGGTCAAGCAGTAGAGGCTCTGGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: RAGICTCFCHSRLLT*RCIPVGQAVEALAG Trigger: TCCAGCCAGAGCCTCTACTGCTTGACCAACTGGTATACACCGCCAGGTCAGCAAACGACTGTGACAAAAACATGTGCATATACCTGCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS-3UTR CAA 90 bp | CCAATCATGTGTCCAGGAGCAGCCTATCTGCCTTCATTAAGTAGTACTGCACTTTTGCAGAGGTCCGTGTaGCAGCAGGAGGACTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: PIMCPGAAYLPSLSSTALLQRSV*QQEDLE Trigger: CTCCAAGTCCTCCTGCTGCAACACGGACCTCTGCAA...AAGTGCAGTACTACTTAATGAAGGCAGATAGGCTGCTCCTGGACACATGATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS-3UTR CAA 90 bp | GCTTCAGGCTTCACTCACAGTTGGACAGTTCTGGATGCTCTTTGCTCCAGAATAAGGTTCCTGGCACTATaGCAGAGGTCCGTGTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: ASGFTHSWTVLDALCSRIRFLAL*QRSVLQ Trigger: CTGCAACACGGACCTCTGCAATAGTGCCAGGAACCT...TATTCTGGAGCAAAGAGCATCCAGAACTGTCCAACTGTGAGTGAAGCCTGAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS GCA 90 bp | GGACTTGGAGTTGGCTGTGACATGATTAATGTCAGGGCAGGTATATaGACATGTTTTTGTCACAGTCGTTTGCTGACCTGGCGGTGTATA | + |
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Preference number: 5 (lower is better) Translates to: GLGVGCDMINVRAGI*TCFCHSRLLTWRCI Trigger: TATACACCGCCAGGTCAGCAAACGACTGTGACAAAAACATGTGCATATACCTGCCCTGACATTAATCATGTCACAGCCAACTCCAAGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS CAA 90 bp | CCGAGGGCCAGCAATCCCCAACTGACGTGGAGGTTCCTGGCACTATaGCAGAGGTCCGTGTTGCAGCAGGAGGACTTGGAGTTGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: PRASNPQLTWRFLAL*QRSVLQQEDLELAV Trigger: CACAGCCAACTCCAAGTCCTCCTGCTGCAACACGGACCTCTGCAATAGTGCCAGGAACCTCCACGTCAGTTGGGGATTGCTGGCCCTCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS CAA 72 bp | AGCAATCCCCAACTGACGTGGAGGTTCCTGGCACTATaGCAGAGGTCCGTGTTGCAGCAGGAGGACTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SNPQLTWRFLAL*QRSVLQQEDLE Trigger: CTCCAAGTCCTCCTGCTGCAACACGGACCTCTGCAATAGTGCCAGGAACCTCCACGTCAGTTGGGGATTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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| CDS CCA 72 bp | TCACAGTCGTTTGCTGACCTGGCGGTGTATACCAGTTaGTCAAGCAGTAGAGGCTCTGGCTGGAGCAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SQSFADLAVYTS*SSSRGSGWSKS Trigger: AGACTTGCTCCAGCCAGAGCCTCTACTGCTTGACCAACTGGTATACACCGCCAGGTCAGCAAACGACTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077004.6 |
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