Pregenerated sensors for LY6K (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044678

Ensembl transcript IDs: ENSMUST00000060301.6, ENSMUST00000168815.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CCAGCAGGGGTACAGAGAATTCATGACCCACAAGGCATGATCCAGGTCCTTCTGTGTTCCTTTAAGAGCTaGTCAGTGGGTGGCCCCTCA	+
Preference number: 4 (lower is better) Translates to: PAGVQRIHDPQGMIQVLLCSFKS*SVGGPS Trigger: TGAGGGGCCACCCACTGACCAGCTCTTAAAGGAACA...CAGAAGGACCTGGATCATGCCTTGTGGGTCATGAATTCTCTGTACCCCTGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS-3UTR CCA 90 bp	AAGGATCCAGCAGGGGTACAGAGAATTCATGACCCACAAGGCATGATCCAGGTCCTCCTTAGGCTCAGATaGTGGATTAGTGCTAGGCGG	+
Preference number: 4 (lower is better) Translates to: KDPAGVQRIHDPQGMIQVLLRLR*WISARR Trigger: CCGCCTAGCACTAATCCACCATCTGAGCCTAAGGAG...GACCTGGATCATGCCTTGTGGGTCATGAATTCTCTGTACCCCTGCTGGATCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS-3UTR CCA 90 bp	GATCCAGCAGGGGTACAGAGAATTCATGACCCACAAGGCATGATCCAGGTCCTTTTAAGAGCTGGTCAGTaGGTGGCCCCTCACCATTAC	+
Preference number: 4 (lower is better) Translates to: DPAGVQRIHDPQGMIQVLLRAGQ*VAPHHY Trigger: GTAATGGTGAGGGGCCACCCACTGACCAGCTCTTAA...AAGGACCTGGATCATGCCTTGTGGGTCATGAATTCTCTGTACCCCTGCTGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS-3UTR CCA 90 bp	AAAACAAATTTAATTAGAAGGATCCAGCAGGGGTACAGAGAATTCATGACCCACCTCCTTAGGCTCAGATaGTGGATTAGTGCTAGGCGG	+
Preference number: 4 (lower is better) Translates to: KTNLIRRIQQGYREFMTHLLRLR*WISARR Trigger: CCGCCTAGCACTAATCCACCATCTGAGCCTAAGGAG...GTGGGTCATGAATTCTCTGTACCCCTGCTGGATCCTTCTAATTAAATTTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS-3UTR TCA 90 bp	AAAACAAATTTAATTAGAAGGATCCAGCAGGGGTACAGAGAATTCATGACCCACCCCCTCACCATTACATaGGTCCCATTGACAGCACTT	+
Preference number: 4 (lower is better) Translates to: KTNLIRRIQQGYREFMTHPLTIT*VPLTAL Trigger: AAGTGCTGTCAATGGGACTCATGTAATGGTGAGGGG...GTGGGTCATGAATTCTCTGTACCCCTGCTGGATCCTTCTAATTAAATTTGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS-3UTR TCA 90 bp	GACGAAGGAAAAACAAATTTAATTAGAAGGATCCAGCAGGGGTACAGAGAATTCCCCCTCACCATTACATaGGTCCCATTGACAGCACTT	+
Preference number: 4 (lower is better) Translates to: DEGKTNLIRRIQQGYREFPLTIT*VPLTAL Trigger: AAGTGCTGTCAATGGGACTCATGTAATGGTGAGGGG...GAATTCTCTGTACCCCTGCTGGATCCTTCTAATTAAATTTGTTTTTCCTTCGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS-3UTR CCA 90 bp	GAAGGAAAAACAAATTTAATTAGAAGGATCCAGCAGGGGTACAGAGAATTCATGTTAAGAGCTGGTCAGTaGGTGGCCCCTCACCATTAC	+
Preference number: 4 (lower is better) Translates to: EGKTNLIRRIQQGYREFMLRAGQ*VAPHHY Trigger: GTAATGGTGAGGGGCCACCCACTGACCAGCTCTTAA...CATGAATTCTCTGTACCCCTGCTGGATCCTTCTAATTAAATTTGTTTTTCCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS TCA 90 bp	GGGTGCACTGTTTCGACACATAGAAGAAACGTTCAAAAATTCGTGTaGCGGCCAACAAACAGAATTTCTTTTCTCCAGGGCACTGGGACG	+
Preference number: 5 (lower is better) Translates to: GCTVSTHRRNVQKFV*RPTNRISFLQGTGT Trigger: CGTCCCAGTGCCCTGGAGAAAAGAAATTCTGTTTGTTGGCCGTCACACGAATTTTTGAACGTTTCTTCTATGTGTCGAAACAGTGCACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8
CDS TCA 72 bp	GTTTCGACACATAGAAGAAACGTTCAAAAATTCGTGTaGCGGCCAACAAACAGAATTTCTTTTCTCCAGGGC	+
Preference number: 6 (lower is better) Translates to: VSTHRRNVQKFV*RPTNRISFLQG Trigger: GCCCTGGAGAAAAGAAATTCTGTTTGTTGGCCGTCACACGAATTTTTGAACGTTTCTTCTATGTGTCGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060301.6 ENSMUST00000168815.8

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