Pregenerated sensors for LY6I (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022586Ensembl transcript IDs: ENSMUST00000023250.11, ENSMUST00000166694.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACATGGGAACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTaGTGGCATAACACCTTGGAATGCTGCCTCTTCCCTGTGCTGGCC | + |
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Preference number: 1 (lower is better) Translates to: THGNPAGPQILMCGW*WHNTLECCLFPVLA Trigger: GGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGTTCCCATGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR CCA 90 bp | CAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACACCTTaGAATGCTGCCTCTTCCCTGTGCTGGCCACATGACTCCAGGACC | + |
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Preference number: 1 (lower is better) Translates to: QDPRYLCVDGDGITP*NAASSLCWPHDSRT Trigger: GGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR-3UTR GCA 90 bp | GCAGAGGGACATCGAGAGGAACACATGGGAACCCTGCAGGACCCCAGATACTTAAACACCTTGGAATGCTaGCTCTTCCCTGTGCTGGCC | + |
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Preference number: 2 (lower is better) Translates to: AEGHREEHMGTLQDPRYLNTLEC*LFPVLA Trigger: GGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTT...TAAGTATCTGGGGTCCTGCAGGGTTCCCATGTGTTCCTCTCGATGTCCCTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR-3UTR CCA 90 bp | ATGGGAACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACAGCCTCTTCCCTGTGCTaGCCACATGACTCCAGGACC | + |
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Preference number: 2 (lower is better) Translates to: MGTLQDPRYLCVDGDGITASSLC*PHDSRT Trigger: GGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGC...TGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGTTCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGGGACATCGAGAGGAACACATGGGAACCCTGCAGGACCCCAGATACTTAGATGGCATAACACCTTaGAATGCTGCCTCTTCCCTG | + |
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Preference number: 2 (lower is better) Translates to: AEGHREEHMGTLQDPRYLDGITP*NAASSL Trigger: CAGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATC...TAAGTATCTGGGGTCCTGCAGGGTTCCCATGTGTTCCTCTCGATGTCCCTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR-3UTR TCA 90 bp | CAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACACCTTGGAATGCTGGTTGCACATTAGGATaGAAGGACAAGGGTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: QDPRYLCVDGDGITPWNAGCTLG*KDKGGD Trigger: GTCCCCACCCTTGTCCTTTCATCCTAATGTGCAACC...AGCATTCCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR-3UTR TCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGGGTTGCACATTAGGATaGAAGGACAAGGGTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: HLGASITHNSSLEDSRKEGCTLG*KDKGGD Trigger: GTCCCCACCCTTGTCCTTTCATCCTAATGTGCAACC...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| 3UTR-3UTR CCA 90 bp | CAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACACCTTGGAATGCTCAAGCCACAACAAAATaGCATTCCAGGAAGTACAGA | + |
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Preference number: 2 (lower is better) Translates to: QDPRYLCVDGDGITPWNAQATTK*HSRKYR Trigger: TCTGTACTTCCTGGAATGCCATTTTGTTGTGGCTTG...AGCATTCCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR CCA 72 bp | GGCATAACACCTTGGAATGCTGCCTCTTCCCTGTGCTaGCCACATGACTCCAGGACCAAGATTAGCAAGCCA | + |
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Preference number: 3 (lower is better) Translates to: GITPWNAASSLC*PHDSRTKISKP Trigger: TGGCTTGCTAATCTTGGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTTATGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR GCA 72 bp | GATGGCATAACACCTTGGAATGCTGCCTCTTCCCTGTaGTGGCCACATGACTCCAGGACCAAGATTAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: DGITPWNAASSL*WPHDSRTKISK Trigger: CTTGCTAATCTTGGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR-3UTR CAA 90 bp | CACCTTGGAATGCTGCCTCTTCCCTGTGCTGGCCACATGACTCCAGGACCAAGATCCAGGAAAGAGTGGTaGCACATTAGGATGAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: HLGMLPLPCAGHMTPGPRSRKEW*HIRMKG Trigger: TCCTTTCATCCTAATGTGCAACCACTCTTTCCTGGA...TCTTGGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR TCA 72 bp | AACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTaGTGGCATAACACCTTGGAATGCTGCCTCTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: NPAGPQILMCGW*WHNTLECCLFP Trigger: AGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| 3UTR CCA 72 bp | AGATACTTATGTGTGGATGGTGATGGCATAACACCTTaGAATGCTGCCTCTTCCCTGTGCTGGCCACATGAC | + |
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Preference number: 3 (lower is better) Translates to: RYLCVDGDGITP*NAASSLCWPHD Trigger: GTCATGTGGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATCACCATCCACACATAAGTATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR TCA 90 bp | CTGCCTCTTCCCTGTGCTGGCCACATGACTCCAGGACCAAGATTAGCAAGCCACGGACTGAGCCCAGGCTaGACAGAAGCACCCCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: LPLPCAGHMTPGPRLASHGLSPG*TEAPLP Trigger: CGGCAGGGGTGCTTCTGTTCAGCCTGGGCTCAGTCC...GTGGCTTGCTAATCTTGGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR GCA 90 bp | CTTGGAATGCTGCCTCTTCCCTGTGCTGGCCACATGACTCCAGGACCAAGATTATGGGAACTGCTGCATTaGAGAGGTCTTCCTGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: LGMLPLPCAGHMTPGPRLWELLH*RGLPGN Trigger: GTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCA...TAATCTTGGTCCTGGAGTCATGTGGCCAGCACAGGGAAGAGGCAGCATTCCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR TCA 90 bp | GCAGAGGGACATCGAGAGGAACACATGGGAACCCTGCAGGACCCCAGATACTTAGTAGGGGCAGGTAAATaGTGGGCAAGAAGTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: AEGHREEHMGTLQDPRYLVGAGK*WARSLK Trigger: TTTGAGACTTCTTGCCCATCATTTACCTGCCCCTAC...TAAGTATCTGGGGTCCTGCAGGGTTCCCATGTGTTCCTCTCGATGTCCCTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR GCA 90 bp | ATGGGAACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACAGCCTCCAGTGGGAACTaGTGCATTGCAGAGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: MGTLQDPRYLCVDGDGITASSGN*CIAEVF Trigger: GAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGC...TGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGTTCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR TCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGGGTCTGCAGGAGGACTaGGCCCAGGCTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKEGLQED*AQAEQK Trigger: CTTCTGTTCAGCCTGGGCTCAGTCCTCCTGCAGACC...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR CCA 90 bp | ACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACACCTTGGTCAGGGCAGAAAGGATaGCAAGAACGGCTCTTTACT | + |
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Preference number: 4 (lower is better) Translates to: TLQDPRYLCVDGDGITPWSGQKG*QERLFT Trigger: AGTAAAGAGCCGTTCTTGCCATCCTTTCTGCCCTGA...CCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR CCA 90 bp | GTGGATGGTGATGGCATAACACCTTGGAATGCTGCCTCTTCCCTGTGCTGGCCATTGCAGAGGTCTTCCTaGCAACAGGAAATATTCATC | + |
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Preference number: 4 (lower is better) Translates to: VDGDGITPWNAASSLCWPLQRSS*QQEIFI Trigger: GATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAA...TGGCCAGCACAGGGAAGAGGCAGCATTCCAAGGTGTTATGCCATCACCATCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR GCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGGCCTCCAGTGGGAACTaGTGCATTGCAGAGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKEASSGN*CIAEVF Trigger: GAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGC...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR TCA 90 bp | ACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTGATGGCATAACACCTTGGATAAATTCTTCCTCCTaGGCAACACAGAATCCATCA | + |
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Preference number: 4 (lower is better) Translates to: TLQDPRYLCVDGDGITPWINSSS*ATQNPS Trigger: TGATGGATTCTGTGTTGCTCAGGAGGAAGAATTTAT...CCAAGGTGTTATGCCATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR GCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGTGGGAACTGCTGCATTaGAGAGGTCTTCCTGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKEWELLH*RGLPGN Trigger: GTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCA...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR TCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGGTAGGGGCAGGTAAATaGTGGGCAAGAAGTCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKEVGAGK*WARSLK Trigger: TTTGAGACTTCTTGCCCATCATTTACCTGCCCCTAC...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR CCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGTCAGGGCAGAAAGGATaGCAAGAACGGCTCTTTACT | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKESGQKG*QERLFT Trigger: AGTAAAGAGCCGTTCTTGCCATCCTTTCTGCCCTGA...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR CCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGTTGCAGAGGTCTTCCTaGCAACAGGAAATATTCATC | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKELQRSS*QQEIFI Trigger: GATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAA...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR TCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGATAAATTCTTCCTCCTaGGCAACACAGAATCCATCA | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEDSRKEINSSS*ATQNPS Trigger: TGATGGATTCTGTGTTGCTCAGGAGGAAGAATTTAT...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS GCA 90 bp | AAGCACCCCTGCCGTGGTCCAGGAGCTGCCTCCAGTGGGAACTGCTaGATTGCAGAGGTCTTCCTGGCAACAGGAAATATTCATCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: KHPCRGPGAASSGNC*IAEVFLATGNIHLG Trigger: ACCAAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCACGGCAGGGGTGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS GCA 90 bp | CAGAAGCACCCCTGCCGTGGTCCAGGAGCTGCCTCCAGTGGGAACTaGTGCATTGCAGAGGTCTTCCTGGCAACAGGAAATATTCATCTT | + |
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Preference number: 5 (lower is better) Translates to: QKHPCRGPGAASSGN*CIAEVFLATGNIHL Trigger: AAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCACGGCAGGGGTGCTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CCA 90 bp | CAGGAGCTGCCTCCAGTGGGAACTGCTGCATTGCAGAGGTCTTCCTaGCAACAGGAAATATTCATCTTGGTGTTAGGATCCAGGATAAAC | + |
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Preference number: 5 (lower is better) Translates to: QELPPVGTAALQRSS*QQEIFILVLGSRIN Trigger: GTTTATCCTGGATCCTAACACCAAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS-3UTR CAA 90 bp | GCAGAGGGACATCGAGAGGAACACATGGGAACCCTGCAGGACCCCAGATACTTACAGGAAATATTCATCTaGGTGTTAGGATCCAGGATA | + |
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Preference number: 5 (lower is better) Translates to: AEGHREEHMGTLQDPRYLQEIFI*VLGSRI Trigger: TATCCTGGATCCTAACACCAAGATGAATATTTCCTG...TAAGTATCTGGGGTCCTGCAGGGTTCCCATGTGTTCCTCTCGATGTCCCTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023250.11 |
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| CDS-3UTR CAA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGACTCCAGGAAAGAGCAGGAAATATTCATCTaGGTGTTAGGATCCAGGATA | + |
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Preference number: 5 (lower is better) Translates to: HLGASITHNSSLEDSRKEQEIFI*VLGSRI Trigger: TATCCTGGATCCTAACACCAAGATGAATATTTCCTG...CTCTTTCCTGGAGTCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS GCA 72 bp | CCCTGCCGTGGTCCAGGAGCTGCCTCCAGTGGGAACTaGTGCATTGCAGAGGTCTTCCTGGCAACAGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: PCRGPGAASSGN*CIAEVFLATGN Trigger: ATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCACGGCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS GCA 72 bp | TGCCGTGGTCCAGGAGCTGCCTCCAGTGGGAACTGCTaGATTGCAGAGGTCTTCCTGGCAACAGGAAATATT | + |
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Preference number: 6 (lower is better) Translates to: CRGPGAASSGNC*IAEVFLATGNI Trigger: AATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCACGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CAA 90 bp | ACCCCTGCCGTGGTCCAGGAGCTGCCTCCAGTGGGAACTGCTGCATaGCAGAGGTCTTCCTGGCAACAGGAAATATTCATCTTGGTGTTA | + |
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Preference number: 6 (lower is better) Translates to: TPAVVQELPPVGTAA*QRSSWQQEIFILVL Trigger: TAACACCAAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCACGGCAGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CAA 72 bp | GTGGTCCAGGAGCTGCCTCCAGTGGGAACTGCTGCATaGCAGAGGTCTTCCTGGCAACAGGAAATATTCATC | + |
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Preference number: 6 (lower is better) Translates to: VVQELPPVGTAA*QRSSWQQEIFI Trigger: GATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS GCA 72 bp | TGGTCCAGGAGCTGCCTCCAGTGGGAACTGCTGCATTaGAGAGGTCTTCCTGGCAACAGGAAATATTCATCT | + |
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Preference number: 6 (lower is better) Translates to: WSRSCLQWELLH*RGLPGNRKYSS Trigger: AGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGGCAGCTCCTGGACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CCA 72 bp | CCTCCAGTGGGAACTGCTGCATTGCAGAGGTCTTCCTaGCAACAGGAAATATTCATCTTGGTGTTAGGATCC | + |
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Preference number: 6 (lower is better) Translates to: PPVGTAALQRSS*QQEIFILVLGS Trigger: GGATCCTAACACCAAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGTTCCCACTGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS TCA 72 bp | AGCAACACAGAATCCATCAGGGTAGGGGCAGGTAAATaGTGGGCAAGAAGTCTCAAATGGGACTCCATAGCA | + |
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Preference number: 6 (lower is better) Translates to: SNTESIRVGAGK*WARSLKWDSIA Trigger: TGCTATGGAGTCCCATTTGAGACTTCTTGCCCATCATTTACCTGCCCCTACCCTGATGGATTCTGTGTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CAA 90 bp | ATCAGGGCAGAAAGGATGGCAAGAACGGCTCTTTACTTTCTTTCTTaGAGAGTTTGCAATAAATTCTTCCTCCTGAGCAACACAGAATCC | + |
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Preference number: 6 (lower is better) Translates to: IRAERMARTALYFLS*RVCNKFFLLSNTES Trigger: GGATTCTGTGTTGCTCAGGAGGAAGAATTTATTGCAAACTCTCAAAGAAAGAAAGTAAAGAGCCGTTCTTGCCATCCTTTCTGCCCTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CAA 90 bp | ACTGCTGCATTGCAGAGGTCTTCCTGGCAACAGGAAATATTCATCTaGGTGTTAGGATCCAGGATAAACTTCTTTTCAATTTCATCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TAALQRSSWQQEIFI*VLGSRINFFSISSG Trigger: CCCTGATGAAATTGAAAAGAAGTTTATCCTGGATCCTAACACCAAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAATGCAGCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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| CDS CAA 72 bp | TTGCAGAGGTCTTCCTGGCAACAGGAAATATTCATCTaGGTGTTAGGATCCAGGATAAACTTCTTTTCAATT | + |
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Preference number: 6 (lower is better) Translates to: LQRSSWQQEIFI*VLGSRINFFSI Trigger: AATTGAAAAGAAGTTTATCCTGGATCCTAACACCAAGATGAATATTTCCTGTTGCCAGGAAGACCTCTGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023250.11 ENSMUST00000166694.2 |
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