Pregenerated sensors for LY6G6E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000013766Ensembl transcript IDs: ENSMUST00000013910.5, ENSMUST00000172494.8, ENSMUST00000172678.8, ENSMUST00000172959.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGAACTCTATTTCTCACCAGCCCCAGTGACACTTCTGTCCCTTTaGCTGGGACCCCACAGCTCATGCAGGGTAGCTGACCTGGGACAT | + |
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Preference number: 1 (lower is better) Translates to: AELYFSPAPVTLLSL*LGPHSSCRVADLGH Trigger: ATGTCCCAGGTCAGCTACCCTGCATGAGCTGTGGGGTCCCAGGCAAAGGGACAGAAGTGTCACTGGGGCTGGTGAGAAATAGAGTTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013910.5 |
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| 3UTR GCA 90 bp | TTAAATATGGGGGTCTCTTATGAGGTGAGGTTGCGGCCACTTGCATaGAGGGAACAGAACTCTGGCTGTAGGAACCGGGTCTGTAGAGGT | + |
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Preference number: 1 (lower is better) Translates to: LNMGVSYEVRLRPLA*REQNSGCRNRVCRG Trigger: ACCTCTACAGACCCGGTTCCTACAGCCAGAGTTCTGTTCCCTGCATGCAAGTGGCCGCAACCTCACCTCATAAGAGACCCCCATATTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| 3UTR TCA 72 bp | TCCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTaGCACTGGAATCCTGGGTTGACAGCCGTGGACGCA | + |
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Preference number: 3 (lower is better) Translates to: STASVQVFSCPR*HWNPGLTAVDA Trigger: TGCGTCCACGGCTGTCAACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| 3UTR TCA 72 bp | CCTTTGCCTGGGACCCCACAGCTCATGCAGGGTAGCTaGCCTGGGACATCTAGGTTTAAATATGGGGGTCTC | + |
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Preference number: 3 (lower is better) Translates to: PLPGTPQLMQGS*PGTSRFKYGGL Trigger: GAGACCCCCATATTTAAACCTAGATGTCCCAGGTCAGCTACCCTGCATGAGCTGTGGGGTCCCAGGCAAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000013910.5 |
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| 3UTR GCA 72 bp | ACACTTCTGTCCCTTTGCCTGGGACCCCACAGCTCATaGAGGGTAGCTGACCTGGGACATCTAGGTTTAAAT | + |
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Preference number: 3 (lower is better) Translates to: TLLSLCLGPHSS*RVADLGHLGLN Trigger: ATTTAAACCTAGATGTCCCAGGTCAGCTACCCTGCATGAGCTGTGGGGTCCCAGGCAAAGGGACAGAAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000013910.5 |
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| 3UTR-3UTR CAA 90 bp | CACTCTATCATTGAGCTATATCTCTACCCAATAGCCCTTTTATTAAATACACTCGACACTTCTGTCCCTTaGCCTGGGACCCCACAGCTC | + |
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Preference number: 3 (lower is better) Translates to: HSIIELYLYPIALLLNTLDTSVP*PGTPQL Trigger: GAGCTGTGGGGTCCCAGGCAAAGGGACAGAAGTGTC...GAGTGTATTTAATAAAAGGGCTATTGGGTAGAGATATAGCTCAATGATAGAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013910.5 |
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| CDS-3UTR CCA 90 bp | ACCAGCCCCAGTGACACTTCTGTCCCTTTGCCTGGGACCCCACAGCTCATGCAGGAGCCGTCCTCTGGCTaGGGAAGTGGTGAGACCCAG | + |
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Preference number: 4 (lower is better) Translates to: TSPSDTSVPLPGTPQLMQEPSSG*GSGETQ Trigger: CTGGGTCTCACCACTTCCCCAGCCAGAGGACGGCTC...CTGCATGAGCTGTGGGGTCCCAGGCAAAGGGACAGAAGTGTCACTGGGGCTGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000013910.5 |
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| CDS-3UTR CCA 90 bp | CATGCAGGGAACAGAACTCTGGCTGTAGGAACCGGGTCTGTAGAGGTACTGGGACCCAGCAGAGGGCACTaGGCTCTGGGGAGGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: HAGNRTLAVGTGSVEVLGPSRGH*ALGRQP Trigger: AGGCTGCCTCCCCAGAGCCCAGTGCCCTCTGCTGGG...TCCCAGTACCTCTACAGACCCGGTTCCTACAGCCAGAGTTCTGTTCCCTGCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | CATGCAGGGAACAGAACTCTGGCTGTAGGAACCGGGTCTGTAGAGGTACTGGGATGGCTGGGGAAGTGGTaGGACCCAGTGTCCCCGAGA | + |
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Preference number: 4 (lower is better) Translates to: HAGNRTLAVGTGSVEVLGWLGKW*DPVSPR Trigger: TCTCGGGGACACTGGGTCTCACCACTTCCCCAGCCA...TCCCAGTACCTCTACAGACCCGGTTCCTACAGCCAGAGTTCTGTTCCCTGCATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | CCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTTGGCTGGGGAAGTGGTaGGACCCAGTGTCCCCGAGA | + |
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Preference number: 4 (lower is better) Translates to: PQHLCRCFHVHGDTGILGWLGKW*DPVSPR Trigger: TCTCGGGGACACTGGGTCTCACCACTTCCCCAGCCA...ACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR CCA 90 bp | CCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTGAGCCGTCCTCTGGCTaGGGAAGTGGTGAGACCCAG | + |
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Preference number: 4 (lower is better) Translates to: PQHLCRCFHVHGDTGILGEPSSG*GSGETQ Trigger: CTGGGTCTCACCACTTCCCCAGCCAGAGGACGGCTC...ACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR CCA 90 bp | ATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTTGACAGCGAGGGCACTGGGCTCTaGGGAGGCAGCCTTTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: ICAGVFMSTVTLESWVDSEGTGL*GGSLSA Trigger: AGCGGAAAGGCTGCCTCCCCAGAGCCCAGTGCCCTC...GCTGTCAACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR CCA 90 bp | GTGTCTCCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCGAGGGCACTGGGCTCTaGGGAGGCAGCCTTTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: VSPQHLCRCFHVHGDTGIEGTGL*GGSLSA Trigger: AGCGGAAAGGCTGCCTCCCCAGAGCCCAGTGCCCTC...GATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGGAGACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | CATGCAGGGAACAGAACTCTGGCTGTAGGAACCGGGTCTGTAGAGGTACTGGGACTGAGGTGCCAACACTaGCACCACACACCTCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: HAGNRTLAVGTGSVEVLGLRCQH*HHTPRP Trigger: AGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAG...TCCCAGTACCTCTACAGACCCGGTTCCTACAGCCAGAGTTCTGTTCCCTGCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | CCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTGAGAGAGTAGGACCGTaGCCAGTAGGTCGCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: PQHLCRCFHVHGDTGILGERVGP*PVGRMA Trigger: GGCCATGCGACCTACTGGTCACGGTCCTACTCTCTC...ACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | GTGTCTCCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCGAGAGAGTAGGACCGTaGCCAGTAGGTCGCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: VSPQHLCRCFHVHGDTGIERVGP*PVGRMA Trigger: GGCCATGCGACCTACTGGTCACGGTCCTACTCTCTC...GATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGGAGACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | CACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTTCTGAGGTGCCAACACTaGCACCACACACCTCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: HSICAGVFMSTVTLESWVLRCQH*HHTPRP Trigger: AGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAG...AACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR TCA 90 bp | GTGTCTCCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCAGCCTTTCCGCTCAATaGCTTCCTCCTCCTTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: VSPQHLCRCFHVHGDTGISLSAQ*LPPPFA Trigger: AGCAAAAGGAGGAGGAAGTCATTGAGCGGAAAGGCT...GATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGGAGACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS TCA 90 bp | AGCTGCAGGTGTAACAGCGGAGCCGTCCTCTGGCTGGGGAAGTGGTaGGACCCAGTGTCCCCGAGAGGAACAGGACGCCAAGGAAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: SCRCNSGAVLWLGKW*DPVSPRGTGRQGRR Trigger: GCGCCTTCCTTGGCGTCCTGTTCCTCTCGGGGACACTGGGTCTCACCACTTCCCCAGCCAGAGGACGGCTCCGCTGTTACACCTGCAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS CCA 90 bp | GGGCTTGGCAAAGCTGCAGGTGTAACAGCGGAGCCGTCCTCTGGCTaGGGAAGTGGTGAGACCCAGTGTCCCCGAGAGGAACAGGACGCC | + |
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Preference number: 5 (lower is better) Translates to: GLGKAAGVTAEPSSG*GSGETQCPREEQDA Trigger: GGCGTCCTGTTCCTCTCGGGGACACTGGGTCTCACCACTTCCCCAGCCAGAGGACGGCTCCGCTGTTACACCTGCAGCTTTGCCAAGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS CCA 90 bp | ACACCTCGTCCTCTCGACACTCCCTGGGAACAGGGTCGCAGGGCTTaGCAAAGCTGCAGGTGTAACAGCGGAGCCGTCCTCTGGCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: TPRPLDTPWEQGRRA*QSCRCNSGAVLWLG Trigger: CCCCAGCCAGAGGACGGCTCCGCTGTTACACCTGCAGCTTTGCCAAGCCCTGCGACCCTGTTCCCAGGGAGTGTCGAGAGGACGAGGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS CCA 90 bp | TGCTCTCGTCCTCTCGACACTCCCTGGGAACAGGGTCGCAGGGCTTaGCAAAGCTGCAGGTGTAACAGCGGAGCCGTCCTCTGGCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: CSRPLDTPWEQGRRA*QSCRCNSGAVLWLG Trigger: CCCCAGCCAGAGGACGGCTCCGCTGTTACACCTGCAGCTTTGCCAAGCCCTGCGACCCTGTTCCCAGGGAGTGTCGAGAGGACGAGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172494.8 |
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| CDS GCA 90 bp | GCTCTGGGGAGGCAGCCTTTCCGCTCAATGACTTCCTCCTCCTTTTaGTCTCGTCCTCTCGACACTCCCTGGGAACAGGGTCGCAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: ALGRQPFRSMTSSSF*SRPLDTPWEQGRRA Trigger: AGCCCTGCGACCCTGTTCCCAGGGAGTGTCGAGAGGACGAGAGCAAAAGGAGGAGGAAGTCATTGAGCGGAAAGGCTGCCTCCCCAGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172494.8 |
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| CDS CCA 90 bp | GCTCTGTGGGACAAAAGAGGAATGCTGAGGTTGCGGCGGCAGCCATaGGCAGGAAAGAGAGGAGCCACCTCGAGAAGGGCCATCGCACCA | + |
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Preference number: 5 (lower is better) Translates to: ALWDKRGMLRLRRQP*AGKRGATSRRAIAP Trigger: TGGTGCGATGGCCCTTCTCGAGGTGGCTCCTCTCTTTCCTGCCCATGGCTGCCGCCGCAACCTCAGCATTCCTCTTTTGTCCCACAGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS TCA 90 bp | TCGAGAAGGGCCATCGCACCAGAGTCCTACCTGAGGTGCCAACACTaGCACCACACACCTCGTCCTCTCGACACTCCCTGGGAACAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SRRAIAPESYLRCQH*HHTPRPLDTPWEQG Trigger: ACCCTGTTCCCAGGGAGTGTCGAGAGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAGGTAGGACTCTGGTGCGATGGCCCTTCTCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS TCA 90 bp | AGAGAGGAGCCACCTCGAGAAGGGCCATCGCACCAGAGTCCTACCTaGGGTGCCAACACTGACACCACACACCTCGTCCTCTCGACACTC | + |
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Preference number: 5 (lower is better) Translates to: REEPPREGPSHQSPT*GANTDTTHLVLSTL Trigger: GAGTGTCGAGAGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAGGTAGGACTCTGGTGCGATGGCCCTTCTCGAGGTGGCTCCTCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS TCA 90 bp | AATGACTTCCTCCTCCTTTTGCTCTGTGGGACAAAAGAGGAATGCTaGGGTTGCGGCGGCAGCCATGGGCAGGAAAGAGAGGAGCCACCT | + |
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Preference number: 5 (lower is better) Translates to: NDFLLLLLCGTKEEC*GCGGSHGQEREEPP Trigger: AGGTGGCTCCTCTCTTTCCTGCCCATGGCTGCCGCCGCAACCTCAGCATTCCTCTTTTGTCCCACAGAGCAAAAGGAGGAGGAAGTCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS-3UTR CAA 90 bp | CCACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTTGTGAGGCGGCAGCATaGCATAGGTCCTGCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: PQHLCRCFHVHGDTGILGCEAAA*HRSCSQ Trigger: CTGTGAGCAGGACCTATGCAATGCTGCCGCCTCACA...ACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS-3UTR CAA 90 bp | CACAGCATCTGTGCAGGTGTTTTCATGTCCACGGTGACACTGGAATCCTGGGTTTGTGAGGCGGCAGCATaGCATAGGTCCTGCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: HSICAGVFMSTVTLESWVCEAAA*HRSCSQ Trigger: CTGTGAGCAGGACCTATGCAATGCTGCCGCCTCACA...AACCCAGGATTCCAGTGTCACCGTGGACATGAAAACACCTGCACAGATGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS GCA 72 bp | ACTCCCTGGGAACAGGGTCGCAGGGCTTGGCAAAGCTaGAGGTGTAACAGCGGAGCCGTCCTCTGGCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: TPWEQGRRAWQS*RCNSGAVLWLG Trigger: CCCCAGCCAGAGGACGGCTCCGCTGTTACACCTGCAGCTTTGCCAAGCCCTGCGACCCTGTTCCCAGGGAGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS TCA 72 bp | CTGCTCACAGCACTGGTGCCGGAGAGAGTAGGACCGTaGCCAGTAGGTCGCATGGCCCAGCAGAGGGCACTG | + |
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Preference number: 6 (lower is better) Translates to: LLTALVPERVGP*PVGRMAQQRAL Trigger: CAGTGCCCTCTGCTGGGCCATGCGACCTACTGGTCACGGTCCTACTCTCTCCGGCACCAGTGCTGTGAGCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS CCA 72 bp | CCTCTCGACACTCCCTGGGAACAGGGTCGCAGGGCTTaGCAAAGCTGCAGGTGTAACAGCGGAGCCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: PLDTPWEQGRRA*QSCRCNSGAVL Trigger: GAGGACGGCTCCGCTGTTACACCTGCAGCTTTGCCAAGCCCTGCGACCCTGTTCCCAGGGAGTGTCGAGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS TCA 72 bp | TGTAACAGCGGAGCCGTCCTCTGGCTGGGGAAGTGGTaGGACCCAGTGTCCCCGAGAGGAACAGGACGCCAA | + |
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Preference number: 6 (lower is better) Translates to: CNSGAVLWLGKW*DPVSPRGTGRQ Trigger: TTGGCGTCCTGTTCCTCTCGGGGACACTGGGTCTCACCACTTCCCCAGCCAGAGGACGGCTCCGCTGTTACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS TCA 72 bp | GCCATCGCACCAGAGTCCTACCTGAGGTGCCAACACTaGCACCACACACCTCGTCCTCTCGACACTCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: AIAPESYLRCQH*HHTPRPLDTPW Trigger: CCAGGGAGTGTCGAGAGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAGGTAGGACTCTGGTGCGATGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS TCA 72 bp | CCACCTCGAGAAGGGCCATCGCACCAGAGTCCTACCTaGGGTGCCAACACTGACACCACACACCTCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: PPREGPSHQSPT*GANTDTTHLVL Trigger: GAGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAGGTAGGACTCTGGTGCGATGGCCCTTCTCGAGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS CCA 72 bp | AAAGCTGCAGGTGTAACAGCGGAGCCGTCCTCTGGCTaGGGAAGTGGTGAGACCCAGTGTCCCCGAGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: KAAGVTAEPSSG*GSGETQCPREE Trigger: TTCCTCTCGGGGACACTGGGTCTCACCACTTCCCCAGCCAGAGGACGGCTCCGCTGTTACACCTGCAGCTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000013910.5 ENSMUST00000172494.8 ENSMUST00000172678.8 ENSMUST00000172959.2 |
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| CDS CAA 90 bp | CTTCCTCCTCCTTTTGCTCTGTGGGACAAAAGAGGAATGCTGAGGTaGCGGCGGCAGCCATGGGCAGGAAAGAGAGGAGCCACCTCGAGA | + |
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Preference number: 6 (lower is better) Translates to: LPPPFALWDKRGMLR*RRQPWAGKRGATSR Trigger: TCTCGAGGTGGCTCCTCTCTTTCCTGCCCATGGCTGCCGCCGCAACCTCAGCATTCCTCTTTTGTCCCACAGAGCAAAAGGAGGAGGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS CAA 72 bp | CCTTTTGCTCTGTGGGACAAAAGAGGAATGCTGAGGTaGCGGCGGCAGCCATGGGCAGGAAAGAGAGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: PFALWDKRGMLR*RRQPWAGKRGA Trigger: GGCTCCTCTCTTTCCTGCCCATGGCTGCCGCCGCAACCTCAGCATTCCTCTTTTGTCCCACAGAGCAAAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS TCA 72 bp | CTCCTCCTTTTGCTCTGTGGGACAAAAGAGGAATGCTaGGGTTGCGGCGGCAGCCATGGGCAGGAAAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: LLLLLCGTKEEC*GCGGSHGQERE Trigger: CTCTCTTTCCTGCCCATGGCTGCCGCCGCAACCTCAGCATTCCTCTTTTGTCCCACAGAGCAAAAGGAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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| CDS GCA 72 bp | AGGCAGCCTTTCCGCTCAATGACTTCCTCCTCCTTTTaGTCTCGTCCTCTCGACACTCCCTGGGAACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: RQPFRSMTSSSF*SRPLDTPWEQG Trigger: ACCCTGTTCCCAGGGAGTGTCGAGAGGACGAGAGCAAAAGGAGGAGGAAGTCATTGAGCGGAAAGGCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172494.8 |
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| CDS TCA 72 bp | GCCTTTCCGCTCAATGACTTCCTCCTCCTTTTGCTCTaGGGTGCCAACACTGACACCACACACCTCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: AFPLNDFLLLLL*GANTDTTHLVL Trigger: GAGGACGAGGTGTGTGGTGTCAGTGTTGGCACCTCAGAGCAAAAGGAGGAGGAAGTCATTGAGCGGAAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS GCA 72 bp | AGGCAGCCTTTCCGCTCAATGACTTCCTCCTCCTTTTaGTCTGAGGTGCCAACACTGACACCACACACCTCG | + |
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Preference number: 6 (lower is better) Translates to: RQPFRSMTSSSF*SEVPTLTPHTS Trigger: CGAGGTGTGTGGTGTCAGTGTTGGCACCTCAGAGCAAAAGGAGGAGGAAGTCATTGAGCGGAAAGGCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013910.5 ENSMUST00000172678.8 |
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| CDS GCA 72 bp | AGGCAGCCTTTCCGCTCAATGACTTCCTCCTCCTTTTaGTCTGTGGGACAAAAGAGGAATGCTGAGGTTGCG | + |
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Preference number: 6 (lower is better) Translates to: RQPFRSMTSSSF*SVGQKRNAEVA Trigger: CGCAACCTCAGCATTCCTCTTTTGTCCCACAGAGCAAAAGGAGGAGGAAGTCATTGAGCGGAAAGGCTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172959.2 |
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