RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LY6G6C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092586

Ensembl transcript IDs: ENSMUST00000173207.8, ENSMUST00000173478.2, ENSMUST00000174876.2

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCCTAGAGGCAGGAGCCAATGGAGAAAGGATCAGCAGTGGGCACTaGCTTGCCTGTGTCCATTGGCTACTCTCCCTTCCCCAAACTGCT +
Preference number: 1 (lower is better)
Translates to: SLEAGANGERISSGH*LACVHWLLSLPQTA
Trigger: AGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATTGGCTCCTGCCTCTAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 90 bp TCCCAGAGGCACAGCAGTGTGCGTCCAAGGAGGGGAGCCTTTCAGTaGCCAGTGGAGGAGGTAGAGTGTTCTAGAAGGAAATGGGAAAGG +
Preference number: 1 (lower is better)
Translates to: SQRHSSVRPRRGAFQ*PVEEVECSRRKWER
Trigger: CCTTTCCCATTTCCTTCTAGAACACTCTACCTCCTCCACTGGCCACTGAAAGGCTCCCCTCCTTGGACGCACACTGCTGTGCCTCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR GCA 90 bp AGAGGCAGGAGCCAATGGAGAAAGGATCAGCAGTGGGCACTGGCTTaGCTGTGTCCATTGGCTACTCTCCCTTCCCCAAACTGCTTGGTT +
Preference number: 1 (lower is better)
Translates to: RGRSQWRKDQQWALA*LCPLATLPSPNCLV
Trigger: AACCAAGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATTGGCTCCTGCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 90 bp AGCCAGGCCCATGCAATGAGGCCAGCGCCTTTTGGAATCACTCCCTaGAGACAAGACAGGAGTTCTTCCAGACTTAGATCCCAGAGGCAC +
Preference number: 1 (lower is better)
Translates to: SQAHAMRPAPFGITP*RQDRSSSRLRSQRH
Trigger: GTGCCTCTGGGATCTAAGTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTCATTGCATGGGCCTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR CCA 90 bp CTTTGTGTCTGTGTGTCTGTGTGTCTGTGTGTGGGTGGAATGGAGTaGAAGGTGACAAGTGAGGGAGAGGAGCGGTGGCTAGAAAGGCCA +
Preference number: 1 (lower is better)
Translates to: LCVCVSVCLCVGGME*KVTSEGEERWLERP
Trigger: TGGCCTTTCTAGCCACCGCTCCTCTCCCTCACTTGTCACCTTCCACTCCATTCCACCCACACACAGACACACAGACACACAGACACAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR CCA 90 bp AATGGAGAAAGGATCAGCAGTGGGCACTGGCTTGCCTGTGTCCATTaGCTACTCTCCCTTCCCCAAACTGCTTGGTTTCTCCCTTCTCTC +
Preference number: 1 (lower is better)
Translates to: NGERISSGHWLACVH*LLSLPQTAWFLPSL
Trigger: GAGAGAAGGGAGAAACCAAGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR TCA 90 bp GGGAGAGGAGCGGTGGCTAGAAAGGCCACTCCAGGTACAGTCCCATaGAATAAATGGTATAGGACTAGGGACATGATCTTCAGAAGAAGG +
Preference number: 1 (lower is better)
Translates to: GRGAVARKATPGTVP*NKWYRTRDMIFRRR
Trigger: CCTTCTTCTGAAGATCATGTCCCTAGTCCTATACCATTTATTTCATGGGACTGTACCTGGAGTGGCCTTTCTAGCCACCGCTCCTCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR CCA 90 bp AAGGAGGTGAGGGAGATGAGGGCCAGTGCGGGTGTGGGCCGTGGAGCCGGGCTGCTTCCCCAAACTGCTTaGTTTCTCCCTTCTCTCCTC +
Preference number: 2 (lower is better)
Translates to: KEVREMRASAGVGRGAGLLPQTA*FLPSLL
Trigger: GAGGAGAGAAGGGAGAAACCAAGCAGTTTGGGGAAG...CAGCCCGGCTCCACGGCCCACACCCGCACTGGCCCTCATCTCCCTCACCTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR TCA 90 bp TGCGGGTGTGGGCCGTGGAGCCGGGCTGTTACAGTTATCCTTGTCACAGCAGGTCATCCTTCCCGAGCATaGGCCATGCCCCTTCTCCTA +
Preference number: 2 (lower is better)
Translates to: CGCGPWSRAVTVILVTAGHPSRA*AMPLLL
Trigger: TAGGAGAAGGGGCATGGCTCATGCTCGGGAAGGATG...ACCTGCTGTGACAAGGATAACTGTAACAGCCCGGCTCCACGGCCCACACCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR GCA 90 bp GGCCAGCGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGACAGAGGCACAGCAGTGTaGGTCCAAGGAGGGGAGCCT +
Preference number: 2 (lower is better)
Translates to: GQRLLESLPGDKTGVLPDRGTAV*VQGGEP
Trigger: AGGCTCCCCTCCTTGGACGCACACTGCTGTGCCTCT...GTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR TCA 90 bp GAGGCCAGCGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGGGAAAGCTGGAGCTCTaGGGACACAGGGAGAAAGGC +
Preference number: 2 (lower is better)
Translates to: EASAFWNHSLETRQEFFQGKLEL*GHREKG
Trigger: GCCTTTCTCCCTGTGTCCTCAGAGCTCCAGCTTTCC...CTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR CCA 90 bp TGGTTGGTTTCGTTGAAGACCTCCCGACAAGGCTCTTCTGGTGTGCCGCAGCGCAGAAAGGATCAGCAGTaGGCACTGGCTTGCCTGTGT +
Preference number: 2 (lower is better)
Translates to: WLVSLKTSRQGSSGVPQRRKDQQ*ALACLC
Trigger: ACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCT...GCGCTGCGGCACACCAGAAGAGCCTTGTCGGGAGGTCTTCAACGAAACCAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR CCA 90 bp TGCGGGTGTGGGCCGTGGAGCCGGGCTGTTACAGTTATCCTTGTCACAGCAGGTTTCAGGCCCAGCTTATaGTTGGTTTCGTTGAAGACC +
Preference number: 2 (lower is better)
Translates to: CGCGPWSRAVTVILVTAGFRPSL*LVSLKT
Trigger: GGTCTTCAACGAAACCAACCATAAGCTGGGCCTGAA...ACCTGCTGTGACAAGGATAACTGTAACAGCCCGGCTCCACGGCCCACACCCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR GCA 90 bp ATGGTTGGTTTCGTTGAAGACCTCCCGACAAGGCTCTTCTGGTGTGCCGCAGCGCTCCCTTCCCCAAACTaGTTGGTTTCTCCCTTCTCT +
Preference number: 2 (lower is better)
Translates to: MVGFVEDLPTRLFWCAAALPSPN*LVSPFS
Trigger: AGAGAAGGGAGAAACCAAGCAGTTTGGGGAAGGGAG...CGCTGCGGCACACCAGAAGAGCCTTGTCGGGAGGTCTTCAACGAAACCAACCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CAA 90 bp CAATGGAGAAAGGATCAGCAGTGGGCACTGGCTTGCCTGTGTCCATaGGCTACTCTCCCTTCCCCAAACTGCTTGGTTTCTCCCTTCTCT +
Preference number: 2 (lower is better)
Translates to: QWRKDQQWALACLCP*ATLPSPNCLVSPFS
Trigger: AGAGAAGGGAGAAACCAAGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR CCA 90 bp GTTGTAGTTCAGGCCCAGCTTATGGTTGGTTTCGTTGAAGACCTCCCGACAAGGATCAGCAGTGGGCACTaGCTTGCCTGTGTCCATTGG +
Preference number: 2 (lower is better)
Translates to: VVVQAQLMVGFVEDLPTRISSGH*LACVHW
Trigger: CCAATGGACACAGGCAAGCCAGTGCCCACTGCTGAT...CCTTGTCGGGAGGTCTTCAACGAAACCAACCATAAGCTGGGCCTGAACTACAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR CCA 90 bp GGCCAGCGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGACAAGATTCTGGAAAGCTaGAGCTCTGAGGACACAGGG +
Preference number: 2 (lower is better)
Translates to: GQRLLESLPGDKTGVLPDKILES*SSEDTG
Trigger: CCCTGTGTCCTCAGAGCTCCAGCTTTCCAGAATCTT...GTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR CCA 90 bp ATGAGGCCAGCGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCCTGTGTGTCTGTGTGTaGGTGGAATGGAGTGGAAGG +
Preference number: 2 (lower is better)
Translates to: MRPAPFGITPWRQDRSSSLCVCV*VEWSGR
Trigger: CCTTCCACTCCATTCCACCCACACACAGACACACAG...GGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR CCA 90 bp GTTGTAGTTCAGGCCCAGCTTATGGTTGGTTTCGTTGAAGACCTCCCGACAAGGAGAGGCAGGAGCCAATaGAGAAAGGATCAGCAGTGG +
Preference number: 2 (lower is better)
Translates to: VVVQAQLMVGFVEDLPTRRGRSQ*RKDQQW
Trigger: CCACTGCTGATCCTTTCTCCATTGGCTCCTGCCTCT...CCTTGTCGGGAGGTCTTCAACGAAACCAACCATAAGCTGGGCCTGAACTACAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR-3UTR CCA 90 bp CGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGACTTAGATAGGGGAGCCTTTCAGTaGCCAGTGGAGGAGGTAGAG +
Preference number: 2 (lower is better)
Translates to: RLLESLPGDKTGVLPDLDRGAFQ*PVEEVE
Trigger: CTCTACCTCCTCCACTGGCCACTGAAAGGCTCCCCT...ATCTAAGTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR CCA 90 bp GAGGCCAGCGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGTGTTCTAGAAGGAAATaGGAAAGGACTGGGTGTGTG +
Preference number: 2 (lower is better)
Translates to: EASAFWNHSLETRQEFFQCSRRK*ERTGCV
Trigger: CACACACCCAGTCCTTTCCCATTTCCTTCTAGAACA...CTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR-3UTR CCA 90 bp GAGGTAGAGTGTTCTAGAAGGAAATGGGAAAGGACTGGGTGTGTGTGTGTGTGTGTGTCTGTGTGTGGGTaGAATGGAGTGGAAGGTGAC +
Preference number: 2 (lower is better)
Translates to: EVECSRRKWERTGCVCVCVSVCG*NGVEGD
Trigger: GTCACCTTCCACTCCATTCCACCCACACACAGACAC...ACACACACACACACACCCAGTCCTTTCCCATTTCCTTCTAGAACACTCTACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR CCA 72 bp GGTGAGGGAGATGAGGGCCAGTGCGGGTGTGGGCCGTaGAGCCGGGCTGTTACAGTTATCCTTGTCACAGCA +
Preference number: 3 (lower is better)
Translates to: GEGDEGQCGCGP*SRAVTVILVTA
Trigger: TGCTGTGACAAGGATAACTGTAACAGCCCGGCTCCACGGCCCACACCCGCACTGGCCCTCATCTCCCTCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 72 bp GCAGGAGCCAATGGAGAAAGGATCAGCAGTGGGCACTaGCTTGCCTGTGTCCATTGGCTACTCTCCCTTCCC +
Preference number: 3 (lower is better)
Translates to: AGANGERISSGH*LACVHWLLSLP
Trigger: GGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATTGGCTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 72 bp CCTAGAGGCAGGAGCCAATGGAGAAAGGATCAGCAGTaGGCACTGGCTTGCCTGTGTCCATTGGCTACTCTC +
Preference number: 3 (lower is better)
Translates to: PRGRSQWRKDQQ*ALACLCPLATL
Trigger: GAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATTGGCTCCTGCCTCTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR GCA 72 bp AGCCAATGGAGAAAGGATCAGCAGTGGGCACTGGCTTaGCTGTGTCCATTGGCTACTCTCCCTTCCCCAAAC +
Preference number: 3 (lower is better)
Translates to: SQWRKDQQWALA*LCPLATLPSPN
Trigger: GTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTTTCTCCATTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 72 bp AGGATCAGCAGTGGGCACTGGCTTGCCTGTGTCCATTaGCTACTCTCCCTTCCCCAAACTGCTTGGTTTCTC +
Preference number: 3 (lower is better)
Translates to: RISSGHWLACVH*LLSLPQTAWFL
Trigger: GAGAAACCAAGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 72 bp CACAGCAGTGTGCGTCCAAGGAGGGGAGCCTTTCAGTaGCCAGTGGAGGAGGTAGAGTGTTCTAGAAGGAAA +
Preference number: 3 (lower is better)
Translates to: HSSVRPRRGAFQ*PVEEVECSRRK
Trigger: TTTCCTTCTAGAACACTCTACCTCCTCCACTGGCCACTGAAAGGCTCCCCTCCTTGGACGCACACTGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR CCA 72 bp GGTAAGCCAGGCCCATGCAATGAGGCCAGCGCCTTTTaGAATCACTCCCTGGAGACAAGACAGGAGTTCTTC +
Preference number: 3 (lower is better)
Translates to: GKPGPCNEASAF*NHSLETRQEFF
Trigger: GAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTCATTGCATGGGCCTGGCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR CCA 72 bp GTTGGTTTCGTTGAAGACCTCCCGACAAGGCTCTTCTaGTGTGCCGCAGCGCAGGTTAGAGAAAACCCACAT +
Preference number: 3 (lower is better)
Translates to: VGFVEDLPTRLF*CAAAQVRENPH
Trigger: ATGTGGGTTTTCTCTAACCTGCGCTGCGGCACACCAGAAGAGCCTTGTCGGGAGGTCTTCAACGAAACCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR TCA 72 bp CTTCTCTCCTCAAAGTCTCATCATCCTTCCCGAGCATaGGCCATGCCCCTTCTCCTAAGACCAATTCCTGGG +
Preference number: 3 (lower is better)
Translates to: LLSSKSHHPSRA*AMPLLLRPIPG
Trigger: CCCAGGAATTGGTCTTAGGAGAAGGGGCATGGCTCATGCTCGGGAAGGATGATGAGACTTTGAGGAGAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 72 bp GAGCCGGGCTGTTACAGTTATCCTTGTCACAGCAGGTaGTGTTGTAGTTCAGGCCCAGCTTATGGTTGGTTT +
Preference number: 3 (lower is better)
Translates to: EPGCYSYPCHSR*CCSSGPAYGWF
Trigger: AAACCAACCATAAGCTGGGCCTGAACTACAACACCACCTGCTGTGACAAGGATAACTGTAACAGCCCGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
3UTR CCA 72 bp TGGCCAGTGGAGGAGGTAGAGTGTTCTAGAAGGAAATaGGAAAGGACTGGGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: WPVEEVECSRRK*ERTGCVCVCVC
Trigger: ACACACACACACACACACACACCCAGTCCTTTCCCATTTCCTTCTAGAACACTCTACCTCCTCCACTGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR CCA 72 bp CATGCAATGAGGCCAGCGCCTTTTGGAATCACTCCCTaGAGACAAGACAGGAGTTCTTCCAGACTTAGATCC +
Preference number: 3 (lower is better)
Translates to: HAMRPAPFGITP*RQDRSSSRLRS
Trigger: GGATCTAAGTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTCATTGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
3UTR TCA 72 bp GCGGTGGCTAGAAAGGCCACTCCAGGTACAGTCCCATaGAATAAATGGTATAGGACTAGGGACATGATCTTC +
Preference number: 3 (lower is better)
Translates to: AVARKATPGTVP*NKWYRTRDMIF
Trigger: GAAGATCATGTCCCTAGTCCTATACCATTTATTTCATGGGACTGTACCTGGAGTGGCCTTTCTAGCCACCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
CDS-3UTR CCA 90 bp CTGGCTTGCCTGTGTCCATTGGCTACTCTCCCTTCCCCAAACTGCTTGGTTTCTTCCAGGCGGCAGGACTaGCGATCCACACAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: LACLCPLATLPSPNCLVSSRRQD*RSTQPS
Trigger: GCTGGGCTGTGTGGATCGCCAGTCCTGCCGCCTGGA...AGAAACCAAGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS-3UTR CCA 90 bp GAGGCCAGCGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGGTTGTCAGGCATTTGTaGCCCGGCTCCAGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: EASAFWNHSLETRQEFFQVVRHL*PGSRRQ
Trigger: CTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAAC...CTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCGCTGGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
CDS-3UTR CCA 90 bp ACAGGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTATCCAGGCGGCAGGACTaGCGATCCACACAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: TGRKAQAIAGGKIVAMELSRRQD*RSTQPS
Trigger: GCTGGGCTGTGTGGATCGCCAGTCCTGCCGCCTGGA...TAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR CCA 90 bp GGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTAGTCGTTGTCAGGCATTTGTaGCCCGGCTCCAGGCGGCAG +
Preference number: 4 (lower is better)
Translates to: GRKAQAIAGGKIVAMELVVVRHL*PGSRRQ
Trigger: CTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAAC...GACTAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR CCA 90 bp CGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGACTTAGATTCCAGGCGGCAGGACTaGCGATCCACACAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: RLLESLPGDKTGVLPDLDSRRQD*RSTQPS
Trigger: GCTGGGCTGTGTGGATCGCCAGTCCTGCCGCCTGGA...ATCTAAGTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
CDS-3UTR TCA 90 bp GGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTAGTCCACAGCCCCAGCAGTTaGCAGCAGATTCCCAGGTCT +
Preference number: 4 (lower is better)
Translates to: GRKAQAIAGGKIVAMELVHSPSS*QQIPRS
Trigger: AGACCTGGGAATCTGCTGTCAACTGCTGGGGCTGTG...GACTAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173207.8
3UTR CAA 72 bp AAGGATCAGCAGTGGGCACTGGCTTGCCTGTGTCCATaGGCTACTCTCCCTTCCCCAAACTGCTTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: KDQQWALACLCP*ATLPSPNCLVS
Trigger: AGAAACCAAGCAGTTTGGGGAAGGGAGAGTAGCCAATGGACACAGGCAAGCCAGTGCCCACTGCTGATCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS-3UTR TCA 90 bp GGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTAGTCGTAGGGCAGACAGGGTaGGCAACAGGAGGTGTTTCA +
Preference number: 4 (lower is better)
Translates to: GRKAQAIAGGKIVAMELVVGQTG*ATGGVS
Trigger: TGAAACACCTCCTGTTGCTCACCCTGTCTGCCCTAC...GACTAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR TCA 90 bp GCTGTTACAGTTATCCTTGTCACAGCAGGTGGTGTTGTAGTTCAGGCCCAGCTTGTAGGGCAGACAGGGTaGGCAACAGGAGGTGTTTCA +
Preference number: 4 (lower is better)
Translates to: AVTVILVTAGGVVVQAQLVGQTG*ATGGVS
Trigger: TGAAACACCTCCTGTTGCTCACCCTGTCTGCCCTAC...AAGCTGGGCCTGAACTACAACACCACCTGCTGTGACAAGGATAACTGTAACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS-3UTR TCA 90 bp GAGGTAGAGTGTTCTAGAAGGAAATGGGAAAGGACTGGGTGTGTGTGTGTGTGTGTAGGGCAGACAGGGTaGGCAACAGGAGGTGTTTCA +
Preference number: 4 (lower is better)
Translates to: EVECSRRKWERTGCVCVCVGQTG*ATGGVS
Trigger: TGAAACACCTCCTGTTGCTCACCCTGTCTGCCCTAC...ACACACACACACACACCCAGTCCTTTCCCATTTCCTTCTAGAACACTCTACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
CDS-3UTR CCA 90 bp ACAGGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTATTCAGGCCCAGCTTATaGTTGGTTTCGTTGAAGACC +
Preference number: 4 (lower is better)
Translates to: TGRKAQAIAGGKIVAMELFRPSL*LVSLKT
Trigger: GGTCTTCAACGAAACCAACCATAAGCTGGGCCTGAA...TAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR CCA 90 bp CGCCTTTTGGAATCACTCCCTGGAGACAAGACAGGAGTTCTTCCAGACTTAGATTTCAGGCCCAGCTTATaGTTGGTTTCGTTGAAGACC +
Preference number: 4 (lower is better)
Translates to: RLLESLPGDKTGVLPDLDFRPSL*LVSLKT
Trigger: GGTCTTCAACGAAACCAACCATAAGCTGGGCCTGAA...ATCTAAGTCTGGAAGAACTCCTGTCTTGTCTCCAGGGAGTGATTCCAAAAGGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
CDS CCA 90 bp GAAGAGGGGGTGTTACCAAGGTACACGTTTGTTGTCAGGCATTTGTaGCCCGGCTCCAGGCGGCAGGACTGGCGATCCACACAGCCCAGC +
Preference number: 5 (lower is better)
Translates to: EEGVLPRYTFVVRHL*PGSRRQDWRSTQPS
Trigger: GCTGGGCTGTGTGGATCGCCAGTCCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGTAACACCCCCTCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS-3UTR CAA 90 bp TGGTTGGTTTCGTTGAAGACCTCCCGACAAGGCTCTTCTGGTGTGCCGCAGCGCTTTGTTGTCAGGCATTaGTGGCCCGGCTCCAGGCGG +
Preference number: 5 (lower is better)
Translates to: WLVSLKTSRQGSSGVPQRFVVRH*WPGSRR
Trigger: CCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAA...GCGCTGCGGCACACCAGAAGAGCCTTGTCGGGAGGTCTTCAACGAAACCAACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS CCA 90 bp AAAACCCACATCTTCCCAAGGTACACGTTTGTTGTCAGGCATTTGTaGCCCGGCTCCAGGCGGCAGGACTGGCGATCCACACAGCCCAGC +
Preference number: 5 (lower is better)
Translates to: KTHIFPRYTFVVRHL*PGSRRQDWRSTQPS
Trigger: GCTGGGCTGTGTGGATCGCCAGTCCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGGAAGATGTGGGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR CAA 90 bp GTTCTTCCAGACTTAGATCCCAGAGGCACAGCAGTGTGCGTCCAAGGAGGGGAGTTTGTTGTCAGGCATTaGTGGCCCGGCTCCAGGCGG +
Preference number: 5 (lower is better)
Translates to: VLPDLDPRGTAVCVQGGEFVVRH*WPGSRR
Trigger: CCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAA...CTCCCCTCCTTGGACGCACACTGCTGTGCCTCTGGGATCTAAGTCTGGAAGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173478.2
CDS-3UTR CAA 90 bp GGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTAGTCTTTGTTGTCAGGCATTaGTGGCCCGGCTCCAGGCGG +
Preference number: 5 (lower is better)
Translates to: GRKAQAIAGGKIVAMELVFVVRH*WPGSRR
Trigger: CCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAA...GACTAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR CAA 90 bp GGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTAGTCCAAGGTACACGTTTGTaGTCAGGCATTTGTGGCCCG +
Preference number: 5 (lower is better)
Translates to: GRKAQAIAGGKIVAMELVQGTRL*SGICGP
Trigger: CGGGCCACAAATGCCTGACAACAAACGTGTACCTTG...GACTAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS-3UTR CAA 90 bp CGCAGGTTAGAGAAAACCCACATCTTCCCTAGAGGCAGGAGCCAATGGAGAAAGCAAGGTACACGTTTGTaGTCAGGCATTTGTGGCCCG +
Preference number: 5 (lower is better)
Translates to: RRLEKTHIFPRGRSQWRKQGTRL*SGICGP
Trigger: CGGGCCACAAATGCCTGACAACAAACGTGTACCTTG...CTTTCTCCATTGGCTCCTGCCTCTAGGGAAGATGTGGGTTTTCTCTAACCTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS-3UTR CAA 90 bp ACAGGGAGAAAGGCTCAGGCTATAGCAGGTGGTAAGATTGTAGCCATGGAGCTACTGTTACAGTTATCCTaGTCACAGCAGGTGGTGTTG +
Preference number: 5 (lower is better)
Translates to: TGRKAQAIAGGKIVAMELLLQLS*SQQVVL
Trigger: CAACACCACCTGCTGTGACAAGGATAACTGTAACAG...TAGCTCCATGGCTACAATCTTACCACCTGCTATAGCCTGAGCCTTTCTCCCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS CAA 90 bp GGCCTTCCCTTCCCAGAGAAGAGGGGGTGTTACCAAGGTACACGTTaGTTGTCAGGCATTTGTGGCCCGGCTCCAGGCGGCAGGACTGGC +
Preference number: 6 (lower is better)
Translates to: GLPFPEKRGCYQGTR*LSGICGPAPGGRTG
Trigger: GCCAGTCCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGTAACACCCCCTCTTCTCTGGGAAGGGAAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS CAA 72 bp CCAGAGAAGAGGGGGTGTTACCAAGGTACACGTTTGTaGTCAGGCATTTGTGGCCCGGCTCCAGGCGGCAGG +
Preference number: 6 (lower is better)
Translates to: PEKRGCYQGTRL*SGICGPAPGGR
Trigger: CCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGTAACACCCCCTCTTCTCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS CAA 90 bp CTTCCCTTCCCAGAGAAGAGGGGGTGTTACCAAGGTACACGTTTGTaGTCAGGCATTTGTGGCCCGGCTCCAGGCGGCAGGACTGGCGAT +
Preference number: 6 (lower is better)
Translates to: LPFPEKRGCYQGTRL*SGICGPAPGGRTGD
Trigger: ATCGCCAGTCCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGTAACACCCCCTCTTCTCTGGGAAGGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS CCA 72 bp ATCTTCCCAAGGTACACGTTTGTTGTCAGGCATTTGTaGCCCGGCTCCAGGCGGCAGGACTGGCGATCCACA +
Preference number: 6 (lower is better)
Translates to: IFPRYTFVVRHL*PGSRRQDWRST
Trigger: TGTGGATCGCCAGTCCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGGAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000173207.8
ENSMUST00000173478.2
CDS CCA 72 bp GTGTTACCAAGGTACACGTTTGTTGTCAGGCATTTGTaGCCCGGCTCCAGGCGGCAGGACTGGCGATCCACA +
Preference number: 6 (lower is better)
Translates to: VLPRYTFVVRHL*PGSRRQDWRST
Trigger: TGTGGATCGCCAGTCCTGCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGTAACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2
CDS CAA 72 bp TTCCCAGAGAAGAGGGGGTGTTACCAAGGTACACGTTaGTTGTCAGGCATTTGTGGCCCGGCTCCAGGCGGC +
Preference number: 6 (lower is better)
Translates to: FPEKRGCYQGTR*LSGICGPAPGG
Trigger: GCCGCCTGGAGCCGGGCCACAAATGCCTGACAACAAACGTGTACCTTGGTAACACCCCCTCTTCTCTGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174876.2